assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474875.1_41851_B01	LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 genome assembly, chromosome: 1	1	574658-576477	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Type I-U,Type I-C, Type I-U?	GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,GTCTCGCCNNNNANGGGCGAGTGGATTGAAAT,GGGCGAGTGGATTGAAAT	32,32,18	1	1	575685-575718	LS483328.1_1000307-1000340	I-C:NA:NA	27,27,26	27	TypeI-U,TypeI-C,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA|86aa|up_8|LS483328.1_564269_564527_+,NA	NA|130aa|up_9|LS483328.1_563870_564260_+	CHL00206, ycf2, Ycf2; Provisional	NA|86aa|up_8|LS483328.1_564269_564527_+	NA	NA|108aa|up_7|LS483328.1_564909_565233_+	pfam15597, Imm59, Immunity protein 59	cas3|818aa|up_6|LS483328.1_565850_568304_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|LS483328.1_569034_569778_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|LS483328.1_569777_571661_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|LS483328.1_571661_572510_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|LS483328.1_572511_573183_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|LS483328.1_573179_574205_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|LS483328.1_574215_574509_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|237aa|down_0|LS483328.1_576880_577591_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|217aa|down_1|LS483328.1_577604_578255_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_2|LS483328.1_578272_579385_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|LS483328.1_579652_580393_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_4|LS483328.1_580389_582108_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_5|LS483328.1_582147_583236_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_6|LS483328.1_583250_583955_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_7|LS483328.1_584214_584703_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|158aa|down_8|LS483328.1_585213_585687_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_9|LS483328.1_585827_586508_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCA_900474875.1_41851_B01	LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 genome assembly, chromosome: 1	2	905554-905663	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA|183aa|up_4|LS483328.1_899301_899850_-,NA|152aa|up_2|LS483328.1_900129_900585_-,NA|126aa|up_1|LS483328.1_900836_901214_-,NA|714aa|down_5|LS483328.1_909827_911969_+,NA|41aa|down_6|LS483328.1_911969_912092_+	NA|657aa|up_9|LS483328.1_891571_893542_+	pfam05738, Cna_B, Cna protein B-type domain	NA|479aa|up_8|LS483328.1_893556_894993_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_7|LS483328.1_895071_895881_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|537aa|up_6|LS483328.1_896195_897806_+	pfam09028, Mac-1, Mac 1	NA|411aa|up_5|LS483328.1_897890_899123_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|183aa|up_4|LS483328.1_899301_899850_-	NA	NA|96aa|up_3|LS483328.1_899842_900130_-	cd18253, BTB_POZ_KLHL24_KRIP6, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 24 (KLHL24)	NA|152aa|up_2|LS483328.1_900129_900585_-	NA	NA|126aa|up_1|LS483328.1_900836_901214_-	NA	NA|1240aa|up_0|LS483328.1_901695_905415_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|LS483328.1_905703_906243_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|LS483328.1_906232_906868_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|LS483328.1_906995_907691_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|LS483328.1_907704_908382_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|LS483328.1_908387_909821_+	pfam08757, CotH, CotH kinase protein	NA|714aa|down_5|LS483328.1_909827_911969_+	NA	NA|41aa|down_6|LS483328.1_911969_912092_+	NA	NA|465aa|down_7|LS483328.1_912115_913510_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1098aa|down_8|LS483328.1_913648_916942_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|down_9|LS483328.1_916931_920576_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type
GCA_900474875.1_41851_B01	LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 genome assembly, chromosome: 1	3	1475101-1475400	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	Type II-A,Type II-B,Type II-C	GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	4,4,3	4	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	NA,NA|196aa|down_4|LS483328.1_1482556_1483144_-,NA|59aa|down_5|LS483328.1_1483183_1483360_-,NA|153aa|down_6|LS483328.1_1483507_1483966_-,NA|151aa|down_7|LS483328.1_1483974_1484427_-,NA|123aa|down_8|LS483328.1_1484568_1484937_-,NA|141aa|down_9|LS483328.1_1485127_1485550_-	NA|129aa|up_9|LS483328.1_1460534_1460921_-	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|434aa|up_8|LS483328.1_1461001_1462303_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|270aa|up_7|LS483328.1_1462527_1463337_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|405aa|up_6|LS483328.1_1463336_1464551_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|412aa|up_5|LS483328.1_1464550_1465786_+	pfam02388, FemAB, FemAB family	NA|253aa|up_4|LS483328.1_1466024_1466783_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|399aa|up_3|LS483328.1_1467048_1468245_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|1049aa|up_2|LS483328.1_1469193_1472340_+	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module	NA|363aa|up_1|LS483328.1_1472629_1473718_-	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|157aa|up_0|LS483328.1_1473701_1474172_-	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family	csn2|225aa|down_0|LS483328.1_1475675_1476350_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|LS483328.1_1476342_1476687_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|LS483328.1_1476683_1477553_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1349aa|down_3|LS483328.1_1477552_1481599_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|196aa|down_4|LS483328.1_1482556_1483144_-	NA	NA|59aa|down_5|LS483328.1_1483183_1483360_-	NA	NA|153aa|down_6|LS483328.1_1483507_1483966_-	NA	NA|151aa|down_7|LS483328.1_1483974_1484427_-	NA	NA|123aa|down_8|LS483328.1_1484568_1484937_-	NA	NA|141aa|down_9|LS483328.1_1485127_1485550_-	NA
