The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	30562	42924	1864452		Synechococcus_phage(28.57%)	8	NA	NA
SQF08214.1|30562_34336_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.7	8.8e-39
SQF08220.1|34496_35951_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
SQF08222.1|35978_37001_+	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.7	1.4e-63
SQF08224.1|37168_37723_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
SQF08225.1|37906_39454_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	5.7e-45
SQF08226.1|39512_40637_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQF08228.1|40889_42155_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQF08231.1|42432_42924_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	1.9e-18
>prophage 2
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	331963	390453	1864452	terminase,tail,transposase,portal	Streptococcus_phage(80.39%)	68	NA	NA
SQF08794.1|331963_332455_+	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.8	1.7e-59
SQF08796.1|332619_332859_+	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA	NA
SQF08797.1|332989_333643_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF08799.1|333775_334720_-	magnesium and cobalt transport protein	NA	NA	NA	NA	NA
SQF08801.1|334963_336061_-	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	94.8	1.7e-197
SQF08811.1|336236_336788_-	phage protein	NA	A7J267	Streptococcus_phage	92.3	9.0e-86
SQF08813.1|336798_337182_-	phage protein	NA	A7J268	Streptococcus_phage	98.4	1.5e-68
SQF08814.1|337195_337546_-	repressor - phage associated	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
SQF08816.1|338186_338378_+	phage protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
SQF08818.1|338428_338629_+	phage protein	NA	A7J271	Streptococcus_phage	92.3	4.9e-26
SQF08819.1|338716_338974_+	phage protein	NA	NA	NA	NA	NA
SQF08821.1|339002_339173_+	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
SQF08823.1|339165_339369_+	phage protein	NA	NA	NA	NA	NA
SQF08825.1|339365_339752_+	phage protein	NA	A7J274	Streptococcus_phage	86.6	4.0e-56
SQF08827.1|339748_339901_+	phage protein	NA	A7J275	Streptococcus_phage	88.0	6.0e-16
SQF08829.1|339897_340101_+	phage protein	NA	A7J276	Streptococcus_phage	89.6	3.7e-29
SQF08831.1|340188_340488_+	phage protein	NA	A7J277	Streptococcus_phage	96.0	3.7e-41
SQF08832.1|340487_341645_+	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQF08838.1|341659_342217_+	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQF08840.1|342259_344182_+	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
SQF08842.1|344186_346571_+	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.4	3.1e-276
SQF08844.1|346956_347232_+	phage protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
SQF08847.1|347228_348551_+	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	96.8	1.1e-249
SQF08849.1|348551_348722_+	phage protein	NA	A7J285	Streptococcus_phage	94.2	3.1e-21
SQF08851.1|348714_348987_+	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQF08853.1|348989_349136_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF08856.1|349119_349536_+	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQF08857.1|349625_350078_+|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQF08859.1|350067_351345_+|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
SQF08861.1|351360_352893_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQF08863.1|352852_354301_+	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQF08865.1|354400_354517_+	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQF08867.1|354521_354788_+	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQF08870.1|354949_355519_+	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQF08872.1|355531_356419_+	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQF08874.1|356430_356787_+	phage protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
SQF08876.1|356797_357076_+	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQF08877.1|357072_357417_+	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQF08882.1|357420_357780_+	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQF08883.1|357791_358391_+|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQF08885.1|358444_358900_+	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
SQF08887.1|358974_359208_+	phage protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
SQF08889.1|359222_363605_+|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.2	1.2e-225
SQF08891.1|363616_364459_+	phage protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
SQF08892.1|364468_366448_+	phage protein	NA	A7J2A7	Streptococcus_phage	92.8	0.0e+00
SQF08894.1|366444_367560_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	74.9	1.6e-142
SQF08896.1|367574_369479_+	Phage infection protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
SQF08899.1|369490_369919_+	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
SQF08900.1|369921_370560_+	phage protein	NA	A3F662	Streptococcus_phage	52.7	2.0e-44
SQF08903.1|370571_370844_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF08905.1|370840_371068_+	phage protein	NA	A7J2B3	Streptococcus_phage	97.3	2.2e-30
SQF08907.1|371080_371203_+	phage membrane protein	NA	NA	NA	NA	NA
SQF08908.1|371190_372396_+	N-acetylmuramoyl-L-alanine amidase	NA	A7J2B5	Streptococcus_phage	82.8	1.5e-202
SQF08911.1|372674_372773_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF08913.1|373092_373275_+	Paratox	NA	A3F673	Streptococcus_phage	73.3	1.7e-17
SQF08916.1|373501_376330_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	1.0e-305
SQF08918.1|376445_377519_+	Xaa-Pro dipeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	32.2	1.3e-16
SQF08921.1|377553_378015_+	ComE operon protein 2	NA	F8WPT6	Bacillus_phage	55.1	1.1e-33
SQF08923.1|378110_378668_+	elongation factor P	NA	NA	NA	NA	NA
SQF08926.1|378713_379103_+	Gls24 family general stress protein	NA	NA	NA	NA	NA
SQF08927.1|379095_379548_+	transcription antitermination protein NusB	NA	NA	NA	NA	NA
SQF08929.1|379688_380654_-	sucrose operon repressor	NA	C6ZCU4	Enterobacteria_phage	27.7	8.0e-21
SQF08931.1|380658_382098_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
SQF08933.1|382339_384223_+	PTS system sucrose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
SQF08934.1|384453_386985_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
SQF08936.1|387225_388110_+	Fructokinase	NA	NA	NA	NA	NA
SQF08938.1|388204_389158_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQF08939.1|389319_390453_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	561915	599951	1864452	terminase,tail,integrase,portal	Streptococcus_pyogenes_phage(59.02%)	61	548178:548193	607459:607474
548178:548193	attL	TCAGTGGATTGAAGAA	NA	NA	NA	NA
SQF09244.1|561915_563082_-|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	42.2	7.0e-80
SQF09246.1|563255_563942_-	phage protein	NA	A0A1P8VVT3	Streptococcus_phage	99.1	4.8e-121
SQF09247.1|564112_564265_-	phage protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
SQF09250.1|564275_564653_-	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
SQF09252.1|564636_564996_-	Transcriptional regulator, MerR family	NA	A0A1P8VVN3	Streptococcus_phage	98.3	1.8e-58
SQF09254.1|565184_565403_+	Transcriptional regulator, Cro family	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
SQF09256.1|565497_565749_+	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	100.0	2.8e-42
SQF09258.1|565779_565914_+	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	100.0	6.7e-19
SQF09260.1|565929_566247_+	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	72.4	1.2e-34
SQF09261.1|566260_567163_+	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	87.5	3.0e-118
SQF09263.1|567172_568015_+	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
SQF09265.1|568014_568152_+	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
SQF09267.1|568164_568518_+	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	53.1	1.8e-15
SQF09269.1|568498_568753_+	phage protein	NA	Q938N0	Temperate_phage	97.6	4.1e-41
SQF09272.1|568774_569257_+	phage protein	NA	Q938M9	Temperate_phage	99.4	4.1e-50
SQF09274.1|569257_569932_+	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	94.6	2.8e-105
SQF09282.1|569924_570416_+	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.8	5.8e-60
SQF09284.1|570624_571065_+	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	1.3e-79
SQF09286.1|571061_571418_+	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
SQF09288.1|571414_571666_+	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	94.0	8.9e-41
SQF09290.1|571659_571848_+	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	98.3	4.5e-29
SQF09292.1|571878_572292_+	phage protein	NA	Q938M1	Temperate_phage	66.7	1.2e-37
SQF09294.1|572288_572573_+	phage protein	NA	A3F628	Streptococcus_phage	79.8	5.9e-33
SQF09296.1|572576_573062_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	1.4e-93
SQF09297.1|573065_573293_+	phage protein	NA	A3F630	Streptococcus_phage	76.0	1.9e-26
SQF09300.1|573317_573503_+	phage protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
SQF09302.1|573499_573793_+	phage protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	100.0	4.2e-50
SQF09305.1|573789_574293_+	phage protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	99.4	1.5e-92
SQF09307.1|574289_574460_+	phage protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
SQF09309.1|574733_575168_+	autolysin regulatory protein	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
SQF09310.1|575516_575897_+	phage protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
SQF09312.1|575886_577161_+|terminase	terminase large subunit	terminase	A0A097PAV9	Streptococcus_pyogenes_phage	100.0	1.1e-251
SQF09314.1|577160_578486_+|portal	portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	100.0	7.4e-243
SQF09316.1|578454_579363_+	phage protein	NA	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
SQF09318.1|579369_579636_+	phage protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
SQF09320.1|579785_580355_+	phage scaffold protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	98.4	8.5e-71
SQF09321.1|580372_581263_+	phage protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
SQF09323.1|581274_581568_+	phage protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
SQF09330.1|581581_581926_+	phage protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
SQF09332.1|581922_582234_+	phage protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
SQF09334.1|582242_582626_+	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.7e-59
SQF09336.1|582627_583038_+	antigen B	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
SQF09338.1|583049_583556_+	antigen A	NA	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
SQF09339.1|583568_583886_+	phage protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
SQF09341.1|583858_584317_+	phage protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	100.0	2.3e-82
SQF09343.1|584309_586115_+	phage, tape measure protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	99.7	8.8e-263
SQF09345.1|586115_587600_+|tail	siphovirus tail component family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
SQF09347.1|587600_591041_+	phage protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
SQF09348.1|591045_592908_+	phage structural protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.7	0.0e+00
SQF09350.1|592918_593266_+	phage protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
SQF09351.1|593279_593402_+	phage protein	NA	A0A097PAU6	Streptococcus_pyogenes_phage	100.0	4.8e-16
SQF09353.1|593415_593739_+	phage protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
SQF09355.1|593738_594071_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
SQF09357.1|594072_594837_+	phage-associated cell wall hydrolase	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
SQF09359.1|594848_595451_+	phage protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
SQF09361.1|595461_596235_+	phage protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
SQF09362.1|596244_596466_+	phage protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
SQF09364.1|596465_597125_+	phage protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
SQF09366.1|597246_598002_-	exotoxin type A	NA	A0A097PAT7	Streptococcus_pyogenes_phage	100.0	2.2e-143
SQF09368.1|598222_598405_+	paratox	NA	J7KIW4	Streptococcus_phage	81.4	1.2e-18
SQF09369.1|598847_599951_+	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	34.7	6.1e-65
607459:607474	attR	TCAGTGGATTGAAGAA	NA	NA	NA	NA
>prophage 4
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	699466	780952	1864452	transposase,tRNA,integrase,protease,head,terminase,tail	Streptococcus_phage(62.3%)	102	702270:702285	786590:786605
SQF09554.1|699466_700306_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQF09555.1|700280_701141_+	GDSL family lipase	NA	NA	NA	NA	NA
SQF09557.1|701118_701706_+	membrane protein	NA	NA	NA	NA	NA
SQF09559.1|701804_702080_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
SQF09561.1|702168_703311_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
702270:702285	attL	CCATGATTGATTTTAG	NA	NA	NA	NA
SQF09562.1|703434_703953_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
SQF09564.1|703964_704720_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQF09566.1|704921_705134_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQF09570.1|705174_705306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF09579.1|705403_705715_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQF09582.1|705716_705902_+	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQF09584.1|706390_706777_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQF09586.1|706757_706991_+	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQF09588.1|706987_707128_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQF09590.1|707136_707343_+	phage protein	NA	NA	NA	NA	NA
SQF09592.1|707398_707728_+	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
SQF09594.1|707730_708657_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQF09597.1|708653_708854_+	phage protein	NA	NA	NA	NA	NA
SQF09604.1|708846_709644_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
SQF09605.1|709765_709858_+	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQF09608.1|710008_710404_+	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQF09609.1|710400_711747_+	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQF09611.1|711757_712090_+	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQF09613.1|712086_712599_+	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQF09615.1|712634_712952_+	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQF09617.1|712948_713104_+	phage protein	NA	NA	NA	NA	NA
SQF09619.1|713100_713352_+	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQF09621.1|713427_713847_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
SQF09623.1|714446_714803_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQF09625.1|714799_716068_+	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.4	1.4e-187
SQF09627.1|716060_717554_+	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
SQF09629.1|717559_717784_+	phage protein	NA	NA	NA	NA	NA
SQF09631.1|717860_718013_+	phage protein	NA	NA	NA	NA	NA
SQF09633.1|718005_718272_+	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQF09635.1|718273_718489_+	phage protein	NA	M1IRA5	Streptococcus_phage	72.4	4.1e-26
SQF09637.1|718570_719986_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.0	1.5e-212
SQF09638.1|720066_720528_+	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
SQF09641.1|720552_721464_+|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.9e-113
SQF09643.1|721463_721664_+	phage protein	NA	NA	NA	NA	NA
SQF09645.1|721673_722096_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
SQF09647.1|722055_722394_+	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQF09648.1|722386_722623_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
SQF09650.1|722623_722959_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQF09652.1|722974_723565_+|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	1.1e-60
SQF09654.1|723575_723839_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SQF09655.1|723853_724225_+	phage protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
SQF09657.1|724224_726588_+|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	49.9	2.5e-132
SQF09658.1|726584_727280_+	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
SQF09660.1|727276_729235_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	48.7	3.4e-95
SQF09662.1|729234_730344_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	67.8	1.3e-115
SQF09663.1|730358_732140_+	gp58-like family protein	NA	Q938J9	Temperate_phage	40.1	3.7e-64
SQF09666.1|732148_732577_+	phage protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
SQF09667.1|732579_733212_+	phage protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
SQF09669.1|733223_733496_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQF09671.1|733492_733720_+	phage protein	NA	A7J2B3	Streptococcus_phage	98.7	7.6e-31
SQF09673.1|733728_733845_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQF09675.1|733838_735056_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	1.1e-163
SQF09677.1|735124_735832_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQF09679.1|735942_736701_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQF09681.1|736940_737123_+	paratox	NA	A3F673	Streptococcus_phage	80.0	1.7e-20
SQF09706.1|737653_739516_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	3.2e-90
SQF09707.1|739815_740751_-	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	45.5	3.6e-66
SQF09708.1|740989_741685_+	phosphoglyceromutase	NA	NA	NA	NA	NA
SQF09709.1|741792_742314_+	3H domain-containing protein	NA	NA	NA	NA	NA
SQF09710.1|742474_743017_+	membrane protein	NA	NA	NA	NA	NA
SQF09711.1|743158_744292_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF09712.1|744296_744410_+	exfoliative toxin	NA	NA	NA	NA	NA
SQF09713.1|744465_745245_+	formate transporter	NA	NA	NA	NA	NA
SQF09714.1|746033_746630_+	recombination protein	NA	NA	NA	NA	NA
SQF09715.1|746730_747777_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SQF09716.1|747967_749359_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
SQF09717.1|749438_750134_+	integral membrane family protein	NA	NA	NA	NA	NA
SQF09718.1|750381_751926_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.8	4.8e-36
SQF09719.1|752232_753852_+	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
SQF09720.1|753978_755979_+	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	7.6e-66
SQF09721.1|756002_756281_-	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
SQF09722.1|756270_757125_-	methyltransferase	NA	NA	NA	NA	NA
SQF09723.1|757164_757905_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF09724.1|758104_758767_+	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
SQF09725.1|758747_760991_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
SQF09727.1|761061_762102_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SQF09728.1|762198_762804_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.7	1.8e-58
SQF09729.1|762970_763198_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF09731.1|763182_763431_+	lipoprotein	NA	NA	NA	NA	NA
SQF09733.1|763427_763565_+	S11 family peptidase	NA	NA	NA	NA	NA
SQF09734.1|763582_764005_+	S11 family peptidase	NA	NA	NA	NA	NA
SQF09735.1|764118_765339_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF09737.1|765343_766372_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQF09739.1|766573_767278_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQF09740.1|767396_768113_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQF09741.1|768409_769372_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQF09743.1|769384_771190_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQF09744.1|771565_772762_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF09746.1|772863_773535_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
SQF09747.1|773597_774653_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQF09749.1|775039_777658_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.1	1.8e-62
SQF09751.1|777842_777977_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF09753.1|778011_778233_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQF09755.1|778229_778991_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF09757.1|779009_779705_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF09759.1|779801_780626_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	40.5	2.3e-48
SQF09761.1|780658_780952_-|transposase	transposase	transposase	NA	NA	NA	NA
786590:786605	attR	CTAAAATCAATCATGG	NA	NA	NA	NA
>prophage 5
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1117129	1172498	1864452	protease,transposase,tRNA,head	Bacillus_virus(23.08%)	53	NA	NA
SQF10434.1|1117129_1118029_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQF10436.1|1118162_1118339_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQF10437.1|1118456_1119548_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF10439.1|1119552_1120686_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF10440.1|1120739_1120883_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF10442.1|1120872_1121136_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQF10443.1|1121446_1122433_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQF10445.1|1122633_1122936_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF10447.1|1123437_1124643_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQF10448.1|1125033_1125264_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF10450.1|1125327_1126350_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQF10452.1|1126472_1128896_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	2.0e-97
SQF10453.1|1129022_1130972_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	7.3e-122
SQF10455.1|1131106_1131748_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQF10456.1|1131805_1133074_-	dihydroorotase	NA	NA	NA	NA	NA
SQF10458.1|1133205_1133859_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	40.5	8.0e-41
SQF10459.1|1133991_1134642_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQF10461.1|1134670_1135534_-	cystine-binding protein	NA	NA	NA	NA	NA
SQF10463.1|1135651_1137106_-	amidase	NA	NA	NA	NA	NA
SQF10464.1|1137302_1137932_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQF10466.1|1137989_1138682_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQF10467.1|1138958_1139495_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF10469.1|1139716_1140622_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQF10470.1|1140701_1141490_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQF10472.1|1141482_1142253_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQF10473.1|1142780_1143590_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.9	1.1e-52
SQF10475.1|1143573_1144014_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	55.3	5.8e-35
SQF10476.1|1144032_1145244_-	phosphopentomutase	NA	NA	NA	NA	NA
SQF10477.1|1145320_1146004_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQF10479.1|1146381_1148481_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.4	3.3e-120
SQF10480.1|1148538_1149282_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQF10482.1|1149429_1150029_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQF10484.1|1150038_1151268_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
SQF10485.1|1151397_1151568_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF10487.1|1151587_1152085_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	1.1e-10
SQF10489.1|1152164_1153028_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
SQF10490.1|1153212_1154388_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQF10492.1|1154374_1155652_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQF10494.1|1155880_1156870_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQF10495.1|1156856_1157870_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQF10497.1|1157862_1158807_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQF10499.1|1158788_1159667_-	mevalonate kinase	NA	NA	NA	NA	NA
SQF10500.1|1159959_1161192_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQF10501.1|1161200_1161869_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQF10502.1|1161871_1162522_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQF10503.1|1162741_1164754_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQF10504.1|1164834_1165245_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQF10505.1|1166137_1168015_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	1.5e-63
SQF10506.1|1168011_1169220_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.5	4.8e-39
SQF10507.1|1169344_1170193_-	degV family protein	NA	NA	NA	NA	NA
SQF10508.1|1170192_1170573_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF10509.1|1170800_1170977_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQF10510.1|1171478_1172498_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
>prophage 6
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1209664	1220267	1864452		Streptococcus_phage(57.14%)	9	NA	NA
SQF10545.1|1209664_1210807_-	aminotransferase class-V family protein	NA	H7BUW1	unidentified_phage	31.7	7.8e-15
SQF10546.1|1211041_1211482_+	membrane protein	NA	NA	NA	NA	NA
SQF10547.1|1211511_1212780_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQF10548.1|1212867_1214220_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	3.5e-30
SQF10549.1|1214440_1214782_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	39.3	1.3e-18
SQF10550.1|1214842_1216009_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQF10551.1|1216102_1216789_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQF10552.1|1216785_1217949_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
SQF10553.1|1218056_1220267_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 7
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1255678	1295543	1864452	protease,transposase,tRNA,bacteriocin	Streptococcus_phage(33.33%)	31	NA	NA
SQF10613.1|1255678_1258084_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQF10616.1|1258293_1259370_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.7e-30
SQF10618.1|1259619_1260486_-	DNA-entry nuclease	NA	NA	NA	NA	NA
SQF10620.1|1260521_1260710_-	epuA protein	NA	NA	NA	NA	NA
SQF10622.1|1260713_1261985_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQF10624.1|1262049_1262307_-	membrane protein	NA	NA	NA	NA	NA
SQF10626.1|1262572_1262989_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQF10628.1|1263001_1264408_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
SQF10630.1|1264569_1265445_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQF10631.1|1265460_1266969_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQF10633.1|1266984_1267521_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQF10635.1|1267520_1268015_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQF10637.1|1268032_1268749_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQF10639.1|1268783_1268981_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQF10641.1|1269372_1270395_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQF10643.1|1270408_1272367_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	35.1	3.4e-103
SQF10645.1|1273339_1276072_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQF10647.1|1276643_1277762_-	ABC transporter	NA	NA	NA	NA	NA
SQF10649.1|1277758_1278886_-	ABC transporter	NA	NA	NA	NA	NA
SQF10652.1|1278894_1279818_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQF10654.1|1279840_1280524_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQF10656.1|1280520_1281192_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQF10658.1|1281166_1282525_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQF10660.1|1282544_1283603_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQF10662.1|1283599_1284550_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQF10664.1|1284771_1284933_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQF10666.1|1285797_1292271_-	extracellular matrix binding protein	NA	NA	NA	NA	NA
SQF10668.1|1292271_1292433_-	putative extracellular matrix binding protein Epf	NA	NA	NA	NA	NA
SQF10670.1|1292904_1294446_+	MgaA-like transcriptional regulator	NA	NA	NA	NA	NA
SQF10672.1|1294755_1295016_+|transposase	transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	73.1	2.5e-17
SQF10674.1|1295150_1295543_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	83.6	2.9e-54
>prophage 8
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1420557	1500704	1864452	protease,transposase,tRNA,bacteriocin	Streptococcus_phage(13.64%)	90	NA	NA
SQF10994.1|1420557_1422501_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
SQF10996.1|1422922_1424257_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQF10998.1|1424258_1425257_-	glycosyltransferase	NA	NA	NA	NA	NA
SQF10999.1|1425386_1426388_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	8.0e-24
SQF11001.1|1426561_1427647_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQF11003.1|1427695_1428361_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQF11004.1|1428371_1428749_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQF11006.1|1428893_1429820_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.2	5.8e-77
SQF11008.1|1430030_1430714_+	membrane protein	NA	NA	NA	NA	NA
SQF11010.1|1430713_1431640_+	membrane protein	NA	NA	NA	NA	NA
SQF11011.1|1431689_1432337_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQF11013.1|1432452_1433172_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQF11015.1|1433177_1433645_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
SQF11017.1|1433647_1435981_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.0	1.4e-90
SQF11019.1|1436074_1436311_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQF11020.1|1436499_1437669_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQF11022.1|1437752_1437881_-	exfoliative toxin	NA	NA	NA	NA	NA
SQF11024.1|1437885_1439019_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF11025.1|1439140_1440643_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.1	1.3e-73
SQF11027.1|1440832_1441426_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQF11034.1|1441422_1442250_-	formamidopyrimidine-DNA glycosylase	NA	A0A1V0CNR6	Kaumoebavirus	28.2	1.6e-14
SQF11041.1|1442428_1443295_-	transcriptional regulator	NA	NA	NA	NA	NA
SQF11044.1|1444355_1444625_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11046.1|1444972_1445419_-	histidine kinase	NA	NA	NA	NA	NA
SQF11048.1|1445463_1445685_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11051.1|1445853_1446531_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11054.1|1446784_1447186_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11056.1|1447379_1447661_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11058.1|1447710_1447905_-|bacteriocin	bacteriocin-associated protein	bacteriocin	NA	NA	NA	NA
SQF11059.1|1448198_1448399_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11061.1|1448411_1448639_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQF11063.1|1448955_1449378_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQF11065.1|1449374_1449524_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQF11068.1|1449861_1450044_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF11070.1|1450156_1450291_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQF11072.1|1450688_1450943_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11073.1|1451248_1451725_-	phosphohydrolase	NA	NA	NA	NA	NA
SQF11075.1|1451745_1452642_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQF11077.1|1452761_1453169_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQF11078.1|1453149_1453647_-|protease	metalloprotease	protease	NA	NA	NA	NA
SQF11080.1|1453805_1454381_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
SQF11082.1|1454426_1455479_-	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
SQF11083.1|1455637_1457410_-	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
SQF11085.1|1457723_1458905_-	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
SQF11086.1|1459060_1459276_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQF11088.1|1459272_1459782_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SQF11090.1|1459854_1460712_-	s1 RNA binding domain	NA	NA	NA	NA	NA
SQF11092.1|1460820_1461378_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQF11094.1|1461407_1462136_-	uridylate kinase	NA	NA	NA	NA	NA
SQF11096.1|1462458_1463148_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SQF11098.1|1463253_1463679_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SQF11099.1|1463922_1464276_+	integral membrane protein	NA	NA	NA	NA	NA
SQF11101.1|1464345_1466751_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
SQF11102.1|1466967_1467774_+	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
SQF11104.1|1467921_1468776_-	ABC 3 transport family protein	NA	NA	NA	NA	NA
SQF11106.1|1468776_1469502_-	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
SQF11108.1|1469565_1470498_-	manganese-binding protein	NA	NA	NA	NA	NA
SQF11110.1|1470643_1471291_+	metalloregulator ScaR	NA	NA	NA	NA	NA
SQF11112.1|1471389_1471731_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11114.1|1471884_1472580_-	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQF11115.1|1472599_1472851_-	membrane protein	NA	NA	NA	NA	NA
SQF11117.1|1472850_1473405_-	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
SQF11118.1|1473438_1474821_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.4	3.8e-32
SQF11120.1|1474993_1476331_-	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
SQF11122.1|1476663_1477623_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SQF11124.1|1477698_1478397_-	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.6	3.2e-11
SQF11127.1|1478389_1478626_-	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
SQF11131.1|1479349_1480318_+	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	52.6	9.0e-89
SQF11132.1|1480829_1481534_+	phage protein	NA	NA	NA	NA	NA
SQF11134.1|1481527_1482400_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	92.9	4.5e-132
SQF11136.1|1482377_1483037_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	91.3	1.9e-114
SQF11138.1|1483354_1483564_+	exotoxin J	NA	NA	NA	NA	NA
SQF11140.1|1484119_1484518_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11142.1|1484955_1485114_-|transposase	ISSth1, transposase (orf2), IS3 family	transposase	NA	NA	NA	NA
SQF11144.1|1485950_1486244_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF11146.1|1486377_1486701_-|transposase	ISSth1, transposase (orf1), IS3 family	transposase	NA	NA	NA	NA
SQF11147.1|1487024_1487738_+	phage protein	NA	NA	NA	NA	NA
SQF11149.1|1487933_1489067_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF11151.1|1489146_1489410_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQF11153.1|1489666_1489963_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11155.1|1490098_1490617_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11157.1|1490950_1491145_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11159.1|1491145_1491592_+|transposase	transposase	transposase	NA	NA	NA	NA
SQF11161.1|1491602_1492025_+	Transposase	NA	A0A1S5SBP9	Streptococcus_phage	51.6	3.7e-31
SQF11163.1|1492746_1493187_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11165.1|1493645_1494398_+	ADP-ribosyltransferase	NA	NA	NA	NA	NA
SQF11170.1|1494559_1496740_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.1	3.1e-169
SQF11172.1|1496706_1497195_-	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
SQF11174.1|1497198_1498212_-	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.0	4.2e-97
SQF11176.1|1498706_1500704_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	34.9	5.1e-86
>prophage 9
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1509046	1514920	1864452		Streptococcus_phage(100.0%)	8	NA	NA
SQF11183.1|1509046_1509874_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	1.4e-127
SQF11184.1|1509947_1510304_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
SQF11186.1|1510603_1511233_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQF11188.1|1511279_1511672_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQF11190.1|1511698_1512562_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQF11192.1|1512566_1512890_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	62.3	1.0e-28
SQF11194.1|1513391_1514267_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
SQF11196.1|1514284_1514920_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
>prophage 10
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1663881	1671959	1864452	transposase	Staphylococcus_phage(33.33%)	9	NA	NA
SQF11460.1|1663881_1664172_-	Transposase	NA	A0A0N7GFG6	Staphylococcus_phage	56.0	3.7e-22
SQF11462.1|1664226_1665033_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.4	2.9e-64
SQF11464.1|1665053_1665578_-|transposase	transposase	transposase	NA	NA	NA	NA
SQF11467.1|1665695_1666010_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11469.1|1666398_1666635_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQF11470.1|1667026_1668784_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	NA	S4VT78	Pandoravirus	28.0	2.7e-35
SQF11474.1|1668816_1669383_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	1.3e-31
SQF11476.1|1669415_1670684_+	Chromosome segregation helicase	NA	A0A127AWE7	Bacillus_phage	47.1	4.5e-96
SQF11478.1|1671320_1671959_+	mitogenic exotoxin Z	NA	A0EX09	Staphylococcus_phage	35.4	7.4e-15
>prophage 11
LS483330	Streptococcus pyogenes strain NCTC8328 genome assembly, chromosome: 1	1864452	1781234	1801505	1864452		Streptococcus_phage(46.67%)	26	NA	NA
SQF11594.1|1781234_1782455_-	transporter	NA	A0A2H4PQR6	Staphylococcus_phage	24.3	7.8e-05
SQF11595.1|1782465_1784448_-	DNA mismatch repair protein	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	3.0e-62
SQF11596.1|1784542_1785688_-	DNA integration/recombination/inversion protein	NA	A0A1X9I5Y5	Streptococcus_phage	45.4	1.9e-85
SQF11597.1|1786946_1787714_-	repressor protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
SQF11598.1|1787867_1788074_+	Cro/CI family phage transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
SQF11599.1|1788107_1788875_+	BRO family, N-terminal domain protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
SQF11600.1|1788884_1789508_+	BRO family, N-terminal domain protein	NA	A0A1W6JPC3	Staphylococcus_phage	43.3	1.7e-40
SQF11601.1|1789507_1789777_+	Prophage antirepressor	NA	NA	NA	NA	NA
SQF11602.1|1790035_1790209_+	phage protein	NA	NA	NA	NA	NA
SQF11603.1|1790426_1790600_+	phage protein	NA	NA	NA	NA	NA
SQF11604.1|1790919_1791120_+	phage protein	NA	NA	NA	NA	NA
SQF11605.1|1791221_1791554_+	phage protein	NA	NA	NA	NA	NA
SQF11606.1|1791550_1791745_+	phage protein	NA	NA	NA	NA	NA
SQF11607.1|1791756_1792086_+	phage protein	NA	NA	NA	NA	NA
SQF11608.1|1792088_1792361_+	Uncharacterised protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
SQF11609.1|1792361_1793228_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
SQF11610.1|1793239_1794634_+	Predicted P-loop ATPase and inactivated derivatives	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
SQF11611.1|1794927_1795182_+	phage protein	NA	NA	NA	NA	NA
SQF11612.1|1795178_1795352_+	phage protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
SQF11613.1|1795357_1795531_+	phage protein	NA	NA	NA	NA	NA
SQF11614.1|1795532_1796042_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
SQF11615.1|1796116_1796605_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
SQF11616.1|1797008_1797371_+	phage protein	NA	NA	NA	NA	NA
SQF11617.1|1797345_1797729_+	phage protein	NA	Q938L8	Temperate_phage	40.2	6.4e-14
SQF11618.1|1797934_1798552_+	phage protein	NA	NA	NA	NA	NA
SQF11619.1|1798949_1801505_-	DNA mismatch repair protein mutS	NA	A0A1V0SGG8	Hokovirus	23.2	3.0e-43
