The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	36268	48629	1808384		Synechococcus_phage(28.57%)	8	NA	NA
SQE76932.1|36268_40042_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.7	7.4e-38
SQE76939.1|40202_41657_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.3	1.7e-54
SQE76943.1|41684_42707_+	phosphoribosylaminoimidazole synthetase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
SQE76945.1|42874_43429_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
SQE76947.1|43612_45160_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
SQE76950.1|45216_46341_-	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
SQE76951.1|46593_47859_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQE76952.1|48137_48629_+	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	1.1e-18
>prophage 2
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	627851	667855	1808384	tail,terminase,integrase	Streptococcus_phage(71.15%)	61	630448:630467	665622:665641
SQE78067.1|627851_628691_+	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
SQE78068.1|628665_629526_+	GDSL family lipase	NA	NA	NA	NA	NA
SQE78070.1|629503_630091_+	membrane protein	NA	NA	NA	NA	NA
SQE78071.1|630189_630465_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
630448:630467	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
SQE78072.1|630553_631696_-|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
SQE78073.1|631819_632338_-	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
SQE78074.1|632349_633105_-	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
SQE78075.1|633306_633519_+	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
SQE78076.1|633559_633691_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78077.1|633788_634100_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
SQE78078.1|634101_634287_+	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
SQE78079.1|634790_635177_+	phage DNA replication protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
SQE78080.1|635157_635391_+	phage protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
SQE78081.1|635387_635528_+	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
SQE78082.1|635536_635743_+	phage protein	NA	NA	NA	NA	NA
SQE78083.1|635798_636128_+	phage protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
SQE78084.1|636130_637057_+	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
SQE78085.1|637053_637254_+	phage protein	NA	NA	NA	NA	NA
SQE78086.1|637246_638044_+	phage protein	NA	J7KGZ1	Streptococcus_phage	83.4	3.9e-130
SQE78087.1|638165_638258_+	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
SQE78088.1|638408_638804_+	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
SQE78089.1|638800_640147_+	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
SQE78114.1|640157_640490_+	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
SQE78116.1|640486_640999_+	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
SQE78118.1|641034_641352_+	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
SQE78120.1|641348_641504_+	phage protein	NA	NA	NA	NA	NA
SQE78122.1|641500_641752_+	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
SQE78125.1|641827_642247_+	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
SQE78127.1|642846_643203_+	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
SQE78129.1|643199_644468_+	structural phage protein	NA	A0A1X9I693	Streptococcus_phage	76.2	2.4e-190
SQE78132.1|644460_645954_+	phage protein	NA	M1Q184	Streptococcus_phage	55.6	3.7e-89
SQE78135.1|645959_646184_+	phage protein	NA	NA	NA	NA	NA
SQE78137.1|646233_646413_+	phage protein	NA	NA	NA	NA	NA
SQE78139.1|646405_646672_+	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
SQE78141.1|646673_646910_+	phage protein	NA	M1IRA5	Streptococcus_phage	80.3	1.2e-31
SQE78144.1|646991_648407_+|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	73.8	2.1e-211
SQE78146.1|648487_648952_+	phage protein	NA	A0A141E167	Streptococcus_phage	57.8	6.3e-40
SQE78149.1|648955_649849_+	phage structural protein	NA	A0A126GGI3	Streptococcus_phage	77.4	6.3e-129
SQE78152.1|649850_649979_+	Uncharacterised protein	NA	A0A0B5A554	Streptococcus_phage	61.9	5.2e-05
SQE78153.1|649999_650422_+	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.9	4.8e-47
SQE78155.1|650381_650720_+	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
SQE78156.1|650712_650952_+	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	65.8	6.3e-20
SQE78157.1|650952_651288_+	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
SQE78158.1|651303_651894_+|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	1.1e-60
SQE78159.1|651904_652168_+	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
SQE78160.1|652182_652554_+	phage protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
SQE78161.1|652553_654917_+|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	50.1	1.1e-132
SQE78163.1|654913_655609_+	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
SQE78164.1|655605_657564_+	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	48.7	3.4e-95
SQE78165.1|657563_658673_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	67.8	1.3e-115
SQE78166.1|658687_660469_+	gp58-like family protein	NA	Q938J9	Temperate_phage	40.1	5.7e-65
SQE78167.1|660477_660906_+	phage protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
SQE78169.1|660908_661541_+	phage protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
SQE78170.1|661552_661825_+	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
SQE78171.1|661821_662049_+	phage protein	NA	A7J2B3	Streptococcus_phage	100.0	2.0e-31
SQE78172.1|662057_662174_+	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	7.0e-09
SQE78173.1|662167_663385_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8VVM5	Streptococcus_phage	60.1	1.1e-163
SQE78174.1|663453_664161_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
SQE78175.1|664271_665030_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQE78177.1|665269_665452_+	paratox	NA	A3F673	Streptococcus_phage	80.0	1.7e-20
SQE78178.1|665992_667855_+	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
665622:665641	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
>prophage 3
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	692378	749817	1808384	protease,transposase,tRNA,integrase	Enterococcus_phage(20.0%)	53	706737:706782	708063:708108
SQE78207.1|692378_693407_-|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE78209.1|693608_694313_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQE78210.1|694431_695148_+	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
SQE78212.1|695442_696405_+	competence CoiA-like family protein	NA	NA	NA	NA	NA
SQE78213.1|696417_698223_+	oligoendopeptidase F	NA	NA	NA	NA	NA
SQE78224.1|698598_699795_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE78225.1|699860_700568_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.0e-08
SQE78226.1|700630_701686_+	foldase protein prsA 1	NA	NA	NA	NA	NA
SQE78227.1|702072_704691_+|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.1e-61
SQE78228.1|704876_705011_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78229.1|705051_705267_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
SQE78231.1|705263_706025_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
SQE78232.1|706043_706739_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
706737:706782	attL	TAATAAAAAGCTTCGGATGGATGAACTGCACCCCAAAAGTTGGACA	NA	NA	NA	NA
SQE78233.1|706837_707053_-	Transposase	NA	A4JX31	Burkholderia_virus	38.0	6.5e-08
SQE78234.1|707092_707263_-|integrase	integrase	integrase	U5P429	Shigella_phage	46.3	1.1e-07
SQE78235.1|707694_707988_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE78237.1|708125_709439_-	chloride channel protein	NA	NA	NA	NA	NA
708063:708108	attR	TGTCCAACTTTTGGGGTGCAGTTCATCCATCCGAAGCTTTTTATTA	NA	NA	NA	NA
SQE78238.1|709413_710373_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.5	3.7e-127
SQE78239.1|710705_712865_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.4	2.3e-262
SQE78241.1|712884_713103_-	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
SQE78243.1|713495_713759_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA	NA
SQE78245.1|713763_715497_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA	NA
SQE78247.1|715681_717109_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE78249.1|717204_717744_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
SQE78250.1|717824_718478_+	polysaccharide deacetylase family protein	NA	M1HV39	Acanthocystis_turfacea_Chlorella_virus	30.2	9.3e-05
SQE78252.1|718588_719674_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.2e-33
SQE78254.1|719771_720398_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
SQE78257.1|720477_720741_+	membrane protein	NA	NA	NA	NA	NA
SQE78259.1|720793_721603_-	membrane protein	NA	NA	NA	NA	NA
SQE78260.1|721747_722245_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQE78263.1|722244_723930_+	DNA polymerase III subunits gamma and tau	NA	E7DN81	Pneumococcus_phage	40.6	6.7e-47
SQE78265.1|724199_725333_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE78267.1|725652_726594_-	biotin-protein ligase	NA	NA	NA	NA	NA
SQE78274.1|726797_729176_+	leucine Rich Repeat family protein	NA	NA	NA	NA	NA
SQE78279.1|729711_730908_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
SQE78281.1|731081_732341_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE78284.1|732697_733603_+	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA	NA
SQE78286.1|733840_734383_+	acetyltransferase family protein	NA	NA	NA	NA	NA
SQE78288.1|734391_735675_+	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA	NA
SQE78290.1|735690_736551_+	methionine aminopeptidase Map	NA	NA	NA	NA	NA
SQE78292.1|736552_737518_+	ribonuclease BN-like family protein	NA	NA	NA	NA	NA
SQE78295.1|737628_738912_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE78297.1|738904_739396_+	shikimate kinase	NA	NA	NA	NA	NA
SQE78299.1|739603_741055_+	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA	NA
SQE78301.1|741136_742495_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	F5CA72	Streptococcus_phi-m46.1-like_phage	99.3	2.7e-256
SQE78302.1|742914_743427_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	97.1	2.1e-92
SQE78304.1|743511_743913_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
SQE78306.1|744017_745502_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
SQE78307.1|745875_747096_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
SQE78310.1|747215_747581_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQE78312.1|747694_748426_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
SQE78314.1|748474_749281_-|transposase	transposase, IS861	transposase	A0A1B1P773	Bacillus_phage	50.7	4.0e-66
SQE78317.1|749301_749817_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	1015750	1070514	1808384	protease,portal,terminase,integrase,tail	Streptococcus_phage(72.22%)	69	1027070:1027118	1067742:1067790
SQE78886.1|1015750_1016077_-|protease	protease	protease	NA	NA	NA	NA
SQE78887.1|1016106_1016892_-	acetyl esterase	NA	NA	NA	NA	NA
SQE78888.1|1017025_1018687_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQE78889.1|1018890_1019649_-	spermidine/putrescine import ATP-binding protein potA	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
SQE78890.1|1019645_1020515_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SQE78891.1|1020690_1020855_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78892.1|1020859_1021858_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE78893.1|1022211_1023864_+	fibronectin-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
SQE78894.1|1023922_1025170_-	Tetratricopeptide repeat family protein	NA	NA	NA	NA	NA
SQE78895.1|1025159_1026341_-	permease	NA	NA	NA	NA	NA
SQE78896.1|1026398_1026875_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
1027070:1027118	attL	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQE78897.1|1027478_1028189_-	exotoxin H precursor	NA	NA	NA	NA	NA
SQE78898.1|1028214_1028994_-	exotoxin I precursor	NA	A0A075M4C7	Staphylococcus_phage	32.7	9.3e-28
SQE78899.1|1029165_1030500_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
SQE78900.1|1030500_1030608_-	phage membrane protein	NA	A7J2B4	Streptococcus_phage	97.1	5.5e-08
SQE78901.1|1030611_1030797_-	phage protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
SQE78902.1|1030793_1031090_-	phage protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
SQE78903.1|1031099_1031717_-	phage protein	NA	Q938J7	Temperate_phage	88.3	2.7e-78
SQE78904.1|1031719_1032148_-	phage protein	NA	Q938J8	Temperate_phage	78.6	1.9e-54
SQE78905.1|1032159_1034049_-	gp58-like family protein	NA	Q938J9	Temperate_phage	75.1	2.6e-180
SQE78906.1|1034058_1035081_-	phage hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	85.2	5.8e-155
SQE78907.1|1035308_1037057_-	phage protein	NA	A7J2A7	Streptococcus_phage	98.5	0.0e+00
SQE78908.1|1037347_1037908_-	phage protein	NA	A7J2A6	Streptococcus_phage	97.1	5.0e-92
SQE78909.1|1037919_1042302_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	75.9	4.6e-225
SQE78910.1|1042316_1042550_-	phage protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
SQE78911.1|1042624_1043080_-	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
SQE78912.1|1043133_1043733_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
SQE78913.1|1043744_1044104_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
SQE78914.1|1044107_1044452_-	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
SQE78915.1|1044448_1044727_-	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
SQE78916.1|1044737_1045094_-	phage protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
SQE78917.1|1045105_1045993_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
SQE78918.1|1046005_1046575_-	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
SQE78919.1|1046736_1047003_-	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
SQE78920.1|1047007_1047124_-	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
SQE78921.1|1047223_1048672_-	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
SQE78922.1|1048631_1050164_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
SQE78923.1|1050179_1051457_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	1.8e-246
SQE78924.1|1051446_1051899_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
SQE78925.1|1051988_1052405_-	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
SQE78926.1|1052397_1052535_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78927.1|1052537_1052810_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
SQE78928.1|1052802_1052973_-	phage protein	NA	A7J285	Streptococcus_phage	92.3	9.0e-21
SQE78929.1|1052973_1054296_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	97.7	5.1e-252
SQE78930.1|1054292_1054568_-	phage protein	NA	A7J283	Streptococcus_phage	96.7	8.6e-45
SQE78931.1|1054953_1057338_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.4	5.3e-276
SQE78932.1|1057342_1059265_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	98.9	0.0e+00
SQE78933.1|1059307_1059865_-	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
SQE78934.1|1059879_1061037_-	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
SQE78935.1|1061036_1061336_-	phage protein	NA	A7J277	Streptococcus_phage	96.0	3.7e-41
SQE78936.1|1061423_1061627_-	phage protein	NA	A7J276	Streptococcus_phage	89.6	3.7e-29
SQE78937.1|1061636_1061777_-	phage protein	NA	A7J275	Streptococcus_phage	60.5	9.8e-05
SQE78938.1|1061773_1062160_-	phage protein	NA	A7J274	Streptococcus_phage	88.2	2.3e-56
SQE78939.1|1062156_1062360_-	phage protein	NA	NA	NA	NA	NA
SQE78940.1|1062352_1062523_-	phage protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
SQE78941.1|1062524_1062836_-	phage protein	NA	A1EAC3	Streptococcus_phage	85.3	1.4e-48
SQE78942.1|1062942_1063155_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78943.1|1063081_1063249_-	phage protein	NA	NA	NA	NA	NA
SQE78944.1|1063252_1063963_-	phage antirepressor KilAC domain-containing protein	NA	M1Q1T4	Streptococcus_phage	78.2	1.5e-101
SQE78945.1|1063974_1064166_-	phage protein	NA	A7J270	Streptococcus_phage	88.9	2.2e-23
SQE78946.1|1064186_1064546_-	Uncharacterised protein	NA	Q9AZZ9	Lactococcus_phage	50.0	2.2e-08
SQE78947.1|1064948_1065224_+	Cro/CI family phage transcriptional regulator	NA	A7J269	Streptococcus_phage	78.3	5.8e-33
SQE78948.1|1065237_1065621_+	phage protein	NA	A7J268	Streptococcus_phage	99.2	9.1e-69
SQE78949.1|1065631_1066054_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78950.1|1066059_1066425_+	orf73	NA	M1PF81	Streptococcus_phage	44.0	6.5e-08
SQE78951.1|1066545_1067685_+|integrase	phage integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
SQE78952.1|1067767_1068808_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.6	4.2e-68
1067742:1067790	attR	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
SQE78953.1|1069051_1069645_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
SQE78954.1|1069644_1070514_-	glucose-1-phosphate thymidyl transferase	NA	K7QKA7	Escherichia_phage	64.2	3.2e-101
>prophage 5
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	1081192	1135372	1808384	protease,transposase,tRNA,head	Bacillus_virus(23.08%)	52	NA	NA
SQE78966.1|1081192_1082092_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE78967.1|1082225_1082402_+	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
SQE78968.1|1082519_1083428_-	exfoliative toxin	NA	NA	NA	NA	NA
SQE78969.1|1083486_1083873_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQE78970.1|1084183_1085170_-	Rhodanese domain protein UPF0176, Firmicutes subgroup	NA	NA	NA	NA	NA
SQE78971.1|1085374_1085677_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78972.1|1086223_1087429_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQE78973.1|1087819_1088050_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQE78974.1|1088113_1089136_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SQE78975.1|1089258_1091682_-	topoisomerase IV subunit	NA	G3M9Z5	Bacillus_virus	33.3	2.0e-97
SQE78976.1|1091808_1093758_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	4.3e-122
SQE78977.1|1093892_1094534_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQE78978.1|1094591_1095860_-	dihydroorotase	NA	NA	NA	NA	NA
SQE78979.1|1095991_1096645_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	39.2	1.7e-38
SQE78980.1|1096777_1097428_-	amino-acid ABC transporter permease yckA	NA	NA	NA	NA	NA
SQE78981.1|1097456_1098320_-	cystine-binding protein	NA	NA	NA	NA	NA
SQE78982.1|1098437_1099892_-	amidase	NA	NA	NA	NA	NA
SQE78983.1|1100088_1100718_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE78984.1|1100775_1101468_-	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQE78985.1|1101744_1102281_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE78986.1|1102502_1103408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE78987.1|1103486_1104275_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
SQE78988.1|1104267_1104981_-	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQE78989.1|1105643_1106453_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.9	4.3e-52
SQE78990.1|1106436_1106877_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	1.3e-34
SQE78991.1|1106895_1108107_-	phosphopentomutase	NA	NA	NA	NA	NA
SQE78992.1|1108183_1108867_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
SQE78993.1|1109244_1111344_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.4	5.1e-121
SQE78994.1|1111401_1112145_-	virulence factor relevant regulator	NA	NA	NA	NA	NA
SQE78995.1|1112292_1112892_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
SQE78996.1|1112901_1114131_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	6.0e-138
SQE78997.1|1114260_1114431_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE78998.1|1114450_1114948_-	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	8.6e-11
SQE78999.1|1115027_1115867_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	52.9	1.9e-82
SQE79000.1|1116075_1117251_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
SQE79001.1|1117237_1118515_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
SQE79002.1|1118744_1119734_-	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
SQE79003.1|1119726_1120734_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
SQE79004.1|1120726_1121671_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
SQE79005.1|1121652_1122531_-	mevalonate kinase	NA	NA	NA	NA	NA
SQE79006.1|1122824_1124057_-	two component system histidine kinase	NA	NA	NA	NA	NA
SQE79007.1|1124065_1124734_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
SQE79008.1|1124736_1125387_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
SQE79009.1|1125607_1127620_+	5'-nucleotidase	NA	NA	NA	NA	NA
SQE79010.1|1127701_1128112_-	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
SQE79011.1|1129003_1130881_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	6.7e-64
SQE79012.1|1130877_1132086_-|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	5.3e-38
SQE79013.1|1132210_1133059_-	degV family protein	NA	NA	NA	NA	NA
SQE79014.1|1133058_1133439_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE79015.1|1133666_1133843_-	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
SQE79016.1|1134345_1134717_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
SQE79017.1|1134727_1135372_+|protease	igG-degrading protease	protease	NA	NA	NA	NA
>prophage 6
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	1172525	1183128	1808384		Streptococcus_phage(57.14%)	9	NA	NA
SQE79052.1|1172525_1173668_-	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
SQE79053.1|1173902_1174343_+	membrane protein	NA	NA	NA	NA	NA
SQE79054.1|1174372_1175641_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE79055.1|1175728_1177081_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.4	9.2e-31
SQE79056.1|1177301_1177643_-	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
SQE79057.1|1177703_1178870_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
SQE79058.1|1178963_1179650_-	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
SQE79059.1|1179646_1180810_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	1.0e-142
SQE79060.1|1180917_1183128_+	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	5.0e-268
>prophage 7
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	1206091	1259628	1808384	protease,transposase,tRNA,bacteriocin	Bacillus_virus(12.5%)	40	NA	NA
SQE79083.1|1206091_1207225_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE79084.1|1207395_1207758_+	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SQE79085.1|1207885_1208092_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
SQE79086.1|1208202_1209015_-	Arginine-binding protein	NA	NA	NA	NA	NA
SQE79087.1|1209154_1212787_-	recombination helicase AddA	NA	G3MA40	Bacillus_virus	25.1	2.1e-21
SQE79088.1|1212783_1215999_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA	NA
SQE79089.1|1216149_1217067_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	37.0	6.0e-34
SQE79090.1|1217170_1217839_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	2.2e-30
SQE79091.1|1217848_1218925_-	permease family protein	NA	NA	NA	NA	NA
SQE79092.1|1218997_1219384_-	Probable type II DNA modification enzyme	NA	NA	NA	NA	NA
SQE79093.1|1219376_1219754_-	salt-stress induced protein	NA	NA	NA	NA	NA
SQE79094.1|1219863_1222269_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQE79095.1|1222478_1223555_-|tRNA	phenylalanyl-tRNA synthetase alpha subunit	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.7e-30
SQE79096.1|1223804_1224344_-	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
SQE79097.1|1224379_1224568_-	epuA protein	NA	NA	NA	NA	NA
SQE79098.1|1224571_1225843_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE79099.1|1225907_1226165_-	membrane protein	NA	NA	NA	NA	NA
SQE79100.1|1226430_1226847_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SQE79101.1|1226859_1228266_-	ATP synthase F0F1 subunit beta	NA	NA	NA	NA	NA
SQE79102.1|1228427_1229303_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
SQE79103.1|1229318_1230827_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
SQE79104.1|1230842_1231379_-	ATP synthase delta chain	NA	NA	NA	NA	NA
SQE79105.1|1231378_1231873_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
SQE79106.1|1231890_1232607_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
SQE79107.1|1232641_1232839_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
SQE79108.1|1233230_1234253_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
SQE79109.1|1234266_1236225_-	NAD-dependent DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	34.9	7.6e-103
SQE79110.1|1237196_1239929_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQE79111.1|1240499_1241618_-	ABC transporter	NA	NA	NA	NA	NA
SQE79112.1|1241614_1242742_-	ABC transporter	NA	NA	NA	NA	NA
SQE79113.1|1242750_1243674_-	ABC transporter family protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
SQE79114.1|1243696_1244380_-	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA	NA
SQE79115.1|1244376_1245048_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQE79116.1|1245022_1246381_-|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	bacteriocin	NA	NA	NA	NA
SQE79117.1|1246400_1247459_-|bacteriocin	bacteriocin biosynthesis cyclodehydratase	bacteriocin	NA	NA	NA	NA
SQE79118.1|1247455_1248406_-	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA	NA
SQE79119.1|1248627_1248789_-|bacteriocin	bacteriocin protoxin, streptolysin S family protein	bacteriocin	NA	NA	NA	NA
SQE79120.1|1249653_1256319_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
SQE79121.1|1256790_1258332_+	MgaA-like transcriptional regulator	NA	NA	NA	NA	NA
SQE79122.1|1258938_1259628_+|transposase	transposase	transposase	A0A1X9I619	Streptococcus_phage	79.4	1.2e-95
>prophage 8
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	1382626	1414411	1808384	protease,transposase,tRNA,bacteriocin	Tupanvirus(14.29%)	37	NA	NA
SQE79238.1|1382626_1384570_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
SQE79239.1|1384991_1386326_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
SQE79240.1|1386327_1387326_-	glycosyltransferase	NA	NA	NA	NA	NA
SQE79241.1|1387456_1388458_-	Catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
SQE79242.1|1388631_1389717_+	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
SQE79243.1|1389765_1390431_+	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA	NA
SQE79244.1|1390441_1390819_+	bleomycin resistance protein	NA	NA	NA	NA	NA
SQE79245.1|1390963_1391890_+	glucosyl transferase family 2	NA	V5USA4	Oenococcus_phage	47.5	1.5e-77
SQE79246.1|1392100_1392784_+	membrane protein	NA	NA	NA	NA	NA
SQE79247.1|1392783_1393710_+	membrane protein	NA	NA	NA	NA	NA
SQE79248.1|1393759_1394407_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
SQE79249.1|1394523_1395243_-	glutamine cyclotransferase	NA	NA	NA	NA	NA
SQE79250.1|1395248_1395716_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	55.6	6.3e-40
SQE79251.1|1395718_1398052_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	2.3e-90
SQE79252.1|1398145_1398382_-	preprotein translocase subunit	NA	NA	NA	NA	NA
SQE79253.1|1398570_1399233_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE79254.1|1399286_1399763_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE79255.1|1399884_1401387_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	41.6	2.3e-75
SQE79256.1|1401576_1402170_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SQE79257.1|1402166_1402994_-	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
SQE79258.1|1403169_1404036_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE79259.1|1405106_1405376_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE79260.1|1405723_1406170_-	histidine kinase	NA	NA	NA	NA	NA
SQE79261.1|1406214_1407282_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE79262.1|1407502_1407937_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE79263.1|1408171_1408411_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE79264.1|1408949_1409150_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE79265.1|1409162_1409390_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
SQE79266.1|1409707_1410130_+|transposase	transposase, Mutator family protein	transposase	NA	NA	NA	NA
SQE79267.1|1410126_1410276_+|transposase	IS1191 transposase	transposase	NA	NA	NA	NA
SQE79268.1|1410613_1410796_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE79269.1|1410810_1411056_-|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
SQE79270.1|1411453_1411708_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE79271.1|1412013_1412490_-	phosphohydrolase	NA	NA	NA	NA	NA
SQE79272.1|1412509_1413406_-	GTP-binding protein Era	NA	NA	NA	NA	NA
SQE79273.1|1413525_1413933_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQE79274.1|1413913_1414411_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 9
LS483315	Streptococcus pyogenes strain NCTC12059 genome assembly, chromosome: 1	1808384	1468134	1474176	1808384		Streptococcus_phage(100.0%)	8	NA	NA
SQE79325.1|1468134_1468962_+	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	79.1	8.4e-128
SQE79326.1|1469035_1469392_-	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	9.1e-39
SQE79327.1|1469697_1470327_+	copper homeostasis protein	NA	NA	NA	NA	NA
SQE79328.1|1470373_1470766_-	hypothetical membrane associated protein	NA	NA	NA	NA	NA
SQE79329.1|1470792_1471656_-	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
SQE79330.1|1471660_1471984_-	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
SQE79331.1|1472647_1473523_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	7.7e-63
SQE79332.1|1473540_1474176_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
