The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	735384	743205	2869819		Hokovirus(16.67%)	10	NA	NA
SQE80282.1|735384_736440_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
SQE80283.1|736439_737126_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQE80284.1|737100_737574_-	DoxX family protein	NA	NA	NA	NA	NA
SQE80285.1|737916_738357_-	lipoprotein	NA	NA	NA	NA	NA
SQE80286.1|738636_739221_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE80287.1|739319_740033_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQE80288.1|740036_740456_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQE80289.1|740457_741126_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQE80290.1|741476_742070_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
SQE80291.1|742053_743205_+	Para-aminobenzoate synthetase component I	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	755177	770020	2869819		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
SQE80300.1|755177_756236_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
SQE80301.1|756586_757129_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE80302.1|757864_758782_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
SQE80303.1|759051_760557_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQE80304.1|760897_761398_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQE80305.1|761417_762284_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE80306.1|763084_763483_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQE80307.1|763445_765551_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQE80308.1|765668_766640_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQE80309.1|767305_768319_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
SQE80310.1|768305_769262_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
SQE80311.1|769258_770020_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	1020207	1033910	2869819		Prochlorococcus_phage(33.33%)	14	NA	NA
SQE80546.1|1020207_1020690_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
SQE80547.1|1020676_1021801_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SQE80548.1|1021804_1022509_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
SQE80549.1|1022508_1022772_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQE80550.1|1022773_1023445_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQE80551.1|1023437_1025627_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
SQE80552.1|1025605_1027090_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
SQE80553.1|1027082_1028111_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
SQE80554.1|1028113_1028680_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
SQE80555.1|1028694_1029336_+	IMP cyclohydrolase	NA	Q58MG3	Prochlorococcus_phage	51.1	6.7e-48
SQE80556.1|1029283_1030174_+	IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.4	9.2e-72
SQE80557.1|1030195_1031443_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
SQE80558.1|1031707_1032517_-	hydroxymethylpyrimidine transport system permease protein	NA	NA	NA	NA	NA
SQE80559.1|1032509_1033910_-	Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
>prophage 4
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	1660654	1669697	2869819	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQE81134.1|1660654_1661173_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
SQE81135.1|1661194_1663468_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
SQE81136.1|1663670_1665950_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQE81137.1|1666224_1666485_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQE81138.1|1666503_1667643_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
SQE81139.1|1667665_1668691_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE81140.1|1668692_1669697_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	1678327	1740529	2869819	tRNA,transposase,protease	Streptococcus_phage(44.44%)	57	NA	NA
SQE81153.1|1678327_1678600_-	Antitoxin epsilon	NA	A0A1X9I6E5	Streptococcus_phage	96.7	5.4e-07
SQE81154.1|1678617_1678827_-	Omega Transcriptional Repressor	NA	A0A1X9I6D5	Streptococcus_phage	98.6	1.4e-31
SQE81155.1|1678925_1679822_-	putative plasmid replication-associated protein	NA	A0A1X9I765	Streptococcus_phage	96.8	1.2e-151
SQE81156.1|1680054_1681659_+|transposase	transposase IS4 family protein	transposase	A0ZS58	Staphylococcus_virus	44.4	1.5e-128
SQE81157.1|1682379_1683039_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
SQE81158.1|1683149_1683506_-	Uncharacterised protein	NA	A0A1B0RXM3	Streptococcus_phage	99.2	4.2e-60
SQE81159.1|1683529_1684102_-	deoR-like helix-turn-helix domain protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
SQE81160.1|1684377_1685172_-	aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	99.6	1.5e-153
SQE81161.1|1685264_1685807_-	streptothricin acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
SQE81162.1|1685803_1686712_-	aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
SQE81163.1|1686744_1687479_-	putative methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
SQE81164.1|1687459_1688329_-	putative nucleotidyltransferase	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
SQE81165.1|1688431_1688677_-	Domain of uncharacterised function (DUF1413)	NA	NA	NA	NA	NA
SQE81166.1|1688803_1690408_-|transposase	transposase IS4 family protein	transposase	A0ZS58	Staphylococcus_virus	44.4	1.5e-128
SQE81167.1|1690903_1691635_+	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
SQE81168.1|1691760_1692153_-	Spectinomycin 9-O-adenylyltransferase	NA	NA	NA	NA	NA
SQE81169.1|1692137_1692542_-	Spectinomycin 9-O-adenylyltransferase	NA	NA	NA	NA	NA
SQE81170.1|1692692_1693070_-	Transposase for transposon Tn554	NA	NA	NA	NA	NA
SQE81171.1|1693076_1694969_-	Transposase B from transposon Tn554	NA	NA	NA	NA	NA
SQE81172.1|1694965_1696051_-	Transposase A from transposon Tn554	NA	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
SQE81173.1|1696169_1696724_-	Putative DNA repair protein, RadC	NA	NA	NA	NA	NA
SQE81174.1|1696720_1697428_-|protease	Late competence protein ComC, processing protease	protease	NA	NA	NA	NA
SQE81175.1|1697697_1698969_-	Dihydrofolate synthase / Folylpolyglutamate synthase	NA	NA	NA	NA	NA
SQE81176.1|1698981_1701612_-|tRNA	Valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
SQE81177.1|1702014_1702575_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
SQE81178.1|1702797_1703865_-	Abrb	NA	NA	NA	NA	NA
SQE81179.1|1704066_1705353_-	Glutamate-1-semialdehyde aminotransferase	NA	NA	NA	NA	NA
SQE81180.1|1705400_1706375_-	Porphobilinogen synthase	NA	NA	NA	NA	NA
SQE81181.1|1706377_1707046_-	uroporphyrinogen III synthase	NA	NA	NA	NA	NA
SQE81182.1|1707067_1707994_-	porphobilinogen deaminase	NA	NA	NA	NA	NA
SQE81183.1|1708035_1708851_-|tRNA	HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase hemA	tRNA	NA	NA	NA	NA
SQE81184.1|1708872_1710219_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
SQE81185.1|1710435_1711026_-	GTP-binding protein EngB	NA	NA	NA	NA	NA
SQE81186.1|1711179_1712442_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
SQE81187.1|1712647_1713133_-|transposase	IS605/IS200-like transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
SQE81188.1|1713334_1714636_-	trigger factor (prolyl isomerase)	NA	NA	NA	NA	NA
SQE81189.1|1714798_1715728_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE81190.1|1715746_1716355_-	NUDIX hydrolase	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
SQE81191.1|1716496_1716853_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
SQE81192.1|1716899_1717100_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
SQE81193.1|1717884_1719378_-	Lysine-specific permease	NA	NA	NA	NA	NA
SQE81194.1|1719803_1721741_-|tRNA	Threonyl-tRNA synthetase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
SQE81195.1|1722153_1723074_-	DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
SQE81196.1|1723073_1724474_-	Helicase loader DnaB	NA	NA	NA	NA	NA
SQE81197.1|1724474_1724945_-	NrdR family transcriptional regulator	NA	NA	NA	NA	NA
SQE81198.1|1725154_1726180_-	glyceraldehyde 3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE81199.1|1726349_1726973_-	Dephospho-CoA kinase	NA	NA	NA	NA	NA
SQE81200.1|1726988_1727861_-	Formamidopyrimidine-DNA glycosylase	NA	G3MA33	Bacillus_virus	39.1	2.0e-42
SQE81201.1|1727876_1730045_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	5.0e-47
SQE81202.1|1729986_1730508_-	DNA polymerase I	NA	A0A218MKA5	uncultured_virus	32.5	2.4e-11
SQE81203.1|1730801_1732289_-	glucosyltransferase	NA	NA	NA	NA	NA
SQE81204.1|1732787_1734452_-	Phosphate regulon sensor protein PhoR	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
SQE81205.1|1734448_1735153_-	Alkaline phosphatase synthesis transcriptional regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
SQE81206.1|1735542_1736811_-	isocitrate dehydrogenase	NA	NA	NA	NA	NA
SQE81207.1|1736859_1737981_-	Citrate synthase (si)	NA	NA	NA	NA	NA
SQE81208.1|1738328_1739690_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA	NA
SQE81209.1|1739722_1740529_-|transposase	putative transposase	transposase	A0ZS58	Staphylococcus_virus	95.5	3.2e-148
>prophage 6
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	1817312	1934403	2869819	protease,tRNA,transposase,bacteriocin	Staphylococcus_phage(86.96%)	106	NA	NA
SQE81269.1|1817312_1823873_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
SQE81270.1|1824198_1824510_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
SQE81271.1|1824531_1826949_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
SQE81272.1|1827244_1828417_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	3.1e-216
SQE81273.1|1828526_1829480_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
SQE81274.1|1829476_1830040_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
SQE81275.1|1830159_1830561_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQE81276.1|1831080_1831305_-	Mobile element protein	NA	Q9MBP7	Staphylococcus_prophage	81.8	4.5e-20
SQE81277.1|1831301_1831793_-	Transposase	NA	A0A146ICT8	Staphylococcus_phage	91.6	2.4e-74
SQE81278.1|1832139_1832967_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQE81279.1|1833200_1834202_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
SQE81280.1|1834323_1834788_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
SQE81281.1|1834800_1835982_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
SQE81282.1|1835992_1836625_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
SQE81283.1|1836631_1837675_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
SQE81284.1|1838155_1839658_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
SQE81285.1|1840180_1840495_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
SQE81286.1|1840494_1841787_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
SQE81287.1|1841804_1842200_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
SQE81288.1|1842494_1843349_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQE81289.1|1843624_1843849_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE81290.1|1844047_1844518_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
SQE81291.1|1844630_1845074_+	comK family protein	NA	NA	NA	NA	NA
SQE81292.1|1845060_1845504_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
SQE81293.1|1845799_1846435_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQE81294.1|1846874_1847588_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQE81295.1|1847847_1848150_+	membrane protein	NA	NA	NA	NA	NA
SQE81296.1|1848405_1848771_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
SQE81297.1|1848767_1849121_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
SQE81298.1|1849675_1850500_+|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	98.2	1.7e-125
SQE81299.1|1850532_1851141_+|transposase	putative transposase	transposase	A0ZS58	Staphylococcus_virus	96.0	1.3e-109
SQE81300.1|1851203_1852037_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
SQE81301.1|1852248_1853157_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
SQE81302.1|1853281_1854475_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.2	1.1e-216
SQE81303.1|1854845_1856438_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
SQE81304.1|1856573_1857059_-|transposase	IS605/IS200-like transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
SQE81305.1|1857433_1858204_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.3e-142
SQE81306.1|1858184_1858664_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
SQE81307.1|1858723_1858981_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
SQE81308.1|1858977_1859979_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
SQE81309.1|1859983_1861462_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
SQE81310.1|1861620_1862103_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.5e-79
SQE81311.1|1862414_1863029_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
SQE81312.1|1863109_1864105_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
SQE81313.1|1864180_1864807_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
SQE81314.1|1864847_1865192_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
SQE81315.1|1865289_1865841_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
SQE81316.1|1866058_1866700_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
SQE81317.1|1866813_1866999_-	[Genomic island nu Sa beta2]	NA	NA	NA	NA	NA
SQE81318.1|1867000_1867177_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE81319.1|1867187_1867571_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE81320.1|1868174_1868318_-|transposase	transposase family protein, putative	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
SQE81321.1|1869187_1869565_-	exported protein	NA	NA	NA	NA	NA
SQE81322.1|1870085_1874198_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
SQE81323.1|1875047_1876247_-	type I restriction-modification enzyme, S subunit, EcoA family protein	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
SQE81324.1|1876239_1877796_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
SQE81325.1|1878158_1878878_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
SQE81326.1|1879028_1879745_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
SQE81327.1|1879902_1880622_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	1.7e-129
SQE81328.1|1880742_1881462_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
SQE81329.1|1881519_1882242_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
SQE81330.1|1882366_1883074_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	1.0e-129
SQE81331.1|1884038_1884605_+	probable beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	1.2e-98
SQE81332.1|1885078_1885777_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
SQE81333.1|1885773_1886535_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
SQE81334.1|1886531_1887224_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
SQE81335.1|1887246_1888620_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
SQE81336.1|1888629_1889148_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
SQE81337.1|1889163_1890408_-	lanthionine synthetase C-like family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
SQE81338.1|1890400_1893394_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
SQE81339.1|1893458_1893602_-	lantibiotic gallidermin	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
SQE81340.1|1894722_1894884_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	96.2	7.5e-25
SQE81341.1|1894898_1895705_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.5	1.3e-146
SQE81342.1|1895706_1896642_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	2.3e-174
SQE81343.1|1897525_1897981_+	[Genomic island nu Sa beta2]	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
SQE81344.1|1897993_1898782_+	Domain of uncharacterised function DUF1828	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
SQE81345.1|1901238_1901793_-	Putative hydrolase ydeN	NA	NA	NA	NA	NA
SQE81346.1|1902115_1903516_-	Protoporphyrinogen IX oxidase, aerobic	NA	NA	NA	NA	NA
SQE81347.1|1903539_1904463_-	Ferrochelatase, protoheme ferro-lyase	NA	NA	NA	NA	NA
SQE81348.1|1904520_1905558_-	Uroporphyrinogen III decarboxylase	NA	NA	NA	NA	NA
SQE81349.1|1905820_1906324_+	signal transduction protein TRAP	NA	NA	NA	NA	NA
SQE81350.1|1906447_1907671_-	EcsB	NA	NA	NA	NA	NA
SQE81351.1|1907663_1908404_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
SQE81352.1|1908537_1908960_+	adenosine 5'-monophosphoramidase	NA	NA	NA	NA	NA
SQE81353.1|1909101_1909467_+	gas vesicle protein-protein	NA	NA	NA	NA	NA
SQE81354.1|1910199_1910757_+	membrane protein	NA	NA	NA	NA	NA
SQE81355.1|1910961_1911924_+	Foldase protein PrsA precursor	NA	NA	NA	NA	NA
SQE81356.1|1912044_1912986_-	CMP-binding-factor 1	NA	NA	NA	NA	NA
SQE81357.1|1912982_1915919_-	membrane associated protein	NA	NA	NA	NA	NA
SQE81358.1|1915908_1917105_-	DNA repair exonuclease family protein YhaO	NA	NA	NA	NA	NA
SQE81359.1|1917876_1918221_-	putative transcriptional regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
SQE81360.1|1918289_1919414_-	membrane protein	NA	NA	NA	NA	NA
SQE81361.1|1919592_1920057_-	HTH domain protein, binds to mecA promoter region	NA	NA	NA	NA	NA
SQE81362.1|1920412_1921036_-	Two-component response regulator-like protein	NA	NA	NA	NA	NA
SQE81363.1|1921057_1922170_-	Two-component sensor protein	NA	NA	NA	NA	NA
SQE81364.1|1922332_1923154_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQE81365.1|1923616_1925002_-	Fumarate hydratase class II	NA	NA	NA	NA	NA
SQE81366.1|1925197_1925593_-	membrane protein	NA	NA	NA	NA	NA
SQE81367.1|1926369_1926522_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE81368.1|1926546_1927146_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
SQE81369.1|1927304_1927775_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
SQE81370.1|1927779_1928907_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
SQE81371.1|1929057_1929786_-	Glutamine transport ATP-binding protein glnQ	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
SQE81372.1|1929772_1931230_-	extracellular glutamine-binding protein	NA	NA	NA	NA	NA
SQE81373.1|1931487_1932549_-	Regulatory protein	NA	NA	NA	NA	NA
SQE81374.1|1933041_1934403_+|transposase	IS1181 transposase	transposase	NA	NA	NA	NA
>prophage 7
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	1959766	2002522	2869819	integrase,head,holin,terminase,capsid,tail,portal	Staphylococcus_phage(78.57%)	70	1969991:1970008	2005986:2006003
SQE81391.1|1959766_1961212_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q4ZB16	Staphylococcus_virus	99.8	1.4e-295
SQE81392.1|1961192_1961630_-|holin	holin, phage phi LC3 family	holin	S4SVG2	Staphylococcus_phage	98.6	1.5e-72
SQE81393.1|1961684_1962080_-	phage protein	NA	A0A0H4IPB8	Staphylococcus_phage	97.7	8.8e-67
SQE81394.1|1962084_1963323_-	Tail fiber protein	NA	Q4ZB96	Staphylococcus_virus	99.0	2.9e-209
SQE81395.1|1963335_1965210_-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA	Q4ZBX1	Staphylococcus_virus	100.0	0.0e+00
SQE81396.1|1965346_1965646_-	phage protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
SQE81397.1|1965686_1965863_-	phage protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
SQE81398.1|1965863_1966241_-	SLT orf 129-like protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
SQE81399.1|1966240_1968064_-	phiETA ORF57-like protein	NA	A0A0F6N3G2	Staphylococcus_phage	99.8	0.0e+00
SQE81400.1|1968063_1969962_-	phage protein	NA	Q4ZBQ2	Staphylococcus_phage	98.9	0.0e+00
SQE81401.1|1969974_1971861_-	GDSL-like Lipase/Acylhydrolase family protein	NA	A1KXA8	Staphylococcus_virus	98.1	0.0e+00
1969991:1970008	attL	TAATAATCCTTGATTAAC	NA	NA	NA	NA
SQE81402.1|1971871_1972813_-|tail	phage tail family protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	99.0	1.7e-180
SQE81403.1|1972827_1975713_-	phage tape measure protein	NA	A0A0E3T8J3	Staphylococcus_phage	94.8	0.0e+00
SQE81404.1|1975716_1976001_-	phage protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
SQE81405.1|1976045_1976552_-	phage family protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
SQE81406.1|1976618_1977176_-|tail	putative tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
SQE81407.1|1977176_1977602_-	phage protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
SQE81408.1|1977614_1978028_-	phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	99.3	4.1e-75
SQE81409.1|1978014_1978350_-|head,tail	putative head-tail adaptor	head,tail	A0A0E3TAH8	Staphylococcus_phage	99.1	2.6e-59
SQE81410.1|1978361_1978712_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
SQE81411.1|1978717_1978861_-	phage protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
SQE81412.1|1978872_1979787_-|capsid	phage major capsid protein, HK97 family	capsid	A0A0H3U2U7	Staphylococcus_phage	99.7	5.7e-170
SQE81413.1|1979803_1980388_-	phage protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	97.4	7.6e-75
SQE81414.1|1980483_1981434_-|head	phage minor head protein	head	A0A0H3U2Z4	Staphylococcus_phage	98.7	1.1e-174
SQE81415.1|1981402_1982827_-|portal	phage portal protein, SPP1 family	portal	A0A0E3T9I6	Staphylococcus_phage	99.8	1.8e-271
SQE81416.1|1982823_1984047_-|terminase	phage terminase, large subunit, PBSX family	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
SQE81417.1|1984039_1984534_-	phage protein	NA	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
SQE81418.1|1984861_1985284_-	phage transcriptional activator RinA	NA	Q4ZBJ7	Staphylococcus_phage	100.0	1.2e-74
SQE81419.1|1985307_1985454_-	phage protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
SQE81420.1|1985454_1985820_-	phage protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
SQE81421.1|1985820_1985997_-	phage transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
SQE81422.1|1985986_1986256_-	phage protein	NA	A0A2I6PEM4	Staphylococcus_phage	91.0	1.5e-38
SQE81423.1|1986215_1986419_-	Uncharacterised protein	NA	A0A2I6PEQ8	Staphylococcus_phage	97.0	8.3e-29
SQE81424.1|1986415_1986622_-	phage protein	NA	A0A0N9BAZ6	Staphylococcus_phage	100.0	1.7e-21
SQE81425.1|1986658_1987201_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
SQE81426.1|1987205_1987442_-	Phage protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
SQE81427.1|1987434_1987719_-	phage protein	NA	A0A2I6PDI3	Staphylococcus_phage	95.7	1.3e-43
SQE81428.1|1987715_1988165_-	YopX-family protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	3.5e-80
SQE81429.1|1988161_1988356_-	phage protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
SQE81430.1|1988352_1988757_-	putative phage PVL protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
SQE81431.1|1988759_1988969_-	Phage protein	NA	A0A2K9VBT9	Staphylococcus_phage	98.5	8.8e-34
SQE81432.1|1988979_1989222_-	phage family protein	NA	A0A2I6PDB4	Staphylococcus_phage	95.0	8.1e-39
SQE81433.1|1989227_1989482_-	phage protein	NA	Q6R831	Staphylococcus_virus	97.6	8.2e-42
SQE81434.1|1989539_1989854_-	PVL ORF-50-like family protein	NA	C5I648	Staphylococcus_phage	99.0	5.9e-42
SQE81435.1|1989854_1990040_-	Protein of uncharacterised function (DUF3113)	NA	A0A2H4JAM6	uncultured_Caudovirales_phage	100.0	5.4e-27
SQE81436.1|1990044_1990449_-	putative phi ETA-like protein	NA	Q4ZBD8	Staphylococcus_virus	97.8	1.5e-66
SQE81437.1|1990458_1990680_-	putative phi ETA-like protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
SQE81438.1|1990692_1990854_-	Uncharacterised protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
SQE81439.1|1990847_1991621_-	putative phage DnaC-like protein	NA	A0A2H4PQI3	Staphylococcus_phage	98.8	9.5e-142
SQE81440.1|1991630_1992401_-	putative phage replication protein	NA	W5R8N2	Staphylococcus_phage	99.2	2.6e-115
SQE81441.1|1992455_1993106_+	putative phage SAP-26 protein	NA	A0A2I6PCS6	Staphylococcus_phage	100.0	9.5e-119
SQE81442.1|1993099_1993219_-	Uncharacterised protein	NA	A0A2H4PQI4	Staphylococcus_phage	100.0	7.5e-14
SQE81443.1|1993215_1993890_-	phage protein	NA	R4IH15	Staphylococcus_phage	96.4	1.4e-125
SQE81444.1|1993890_1994442_-	ORF027	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
SQE81445.1|1994452_1994878_-	Single-stranded DNA-binding protein, phage associated	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
SQE81446.1|1994877_1995501_-	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
SQE81447.1|1995493_1995715_-	phage protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
SQE81448.1|1995724_1995985_-	phage protein	NA	Q4ZBM7	Staphylococcus_phage	98.8	9.9e-43
SQE81449.1|1996078_1996240_-	phage protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
SQE81450.1|1996223_1996451_-	phage protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	3.4e-31
SQE81451.1|1996467_1996917_-	phi PV83 orf 10-like protein	NA	A1KWZ2	Staphylococcus_virus	99.3	3.3e-78
SQE81452.1|1996932_1997685_-	antirepressor	NA	A0A0E3T9K5	Staphylococcus_phage	98.4	9.0e-137
SQE81453.1|1997686_1997872_-	Helix-turn-helix	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
SQE81454.1|1998322_1998559_+	Uncharacterised protein	NA	Q4ZBN3	Staphylococcus_phage	98.7	2.3e-38
SQE81455.1|1998551_1998713_-	Uncharacterised protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
SQE81456.1|1998740_1999517_-	Rha family phage regulatory protein	NA	A0A2I6PD87	Staphylococcus_phage	89.1	1.5e-123
SQE81457.1|1999539_1999767_-	Helix-turn-helix domain	NA	Q4ZB05	Staphylococcus_virus	100.0	1.6e-36
SQE81458.1|1999920_2000550_+	peptidase S24-like protein	NA	Q4ZB06	Staphylococcus_virus	100.0	2.6e-113
SQE81459.1|2000585_2001266_+	pemK-like family protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
SQE81460.1|2001475_2002522_+|integrase	phage integrase family protein	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
2005986:2006003	attR	TAATAATCCTTGATTAAC	NA	NA	NA	NA
>prophage 8
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	2039187	2120356	2869819	integrase,head,protease,holin,terminase,capsid,tail	Staphylococcus_phage(87.34%)	106	2040295:2040313	2096597:2096615
SQE81494.1|2039187_2039514_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQE81495.1|2039805_2039979_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE81496.1|2039959_2040562_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
2040295:2040313	attL	GTTTTTCTTCTATTTTCAT	NA	NA	NA	NA
SQE81497.1|2040832_2041654_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
SQE81498.1|2041646_2043116_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
SQE81499.1|2043299_2044376_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQE81500.1|2044395_2044953_+	ACT domain protein	NA	NA	NA	NA	NA
SQE81501.1|2044952_2045189_+	ACT domain protein	NA	NA	NA	NA	NA
SQE81502.1|2045378_2046677_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQE81503.1|2046940_2047756_-	putative ATP-binding protein	NA	NA	NA	NA	NA
SQE81504.1|2047748_2049191_-|integrase	integrase core domain-containing protein	integrase	NA	NA	NA	NA
SQE81505.1|2049162_2049756_-	DNA-invertase hin	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.0e-42
SQE81506.1|2050019_2050400_-	penicillinase repressor	NA	NA	NA	NA	NA
SQE81507.1|2050389_2052147_-	regulatory protein BlaR1	NA	NA	NA	NA	NA
SQE81508.1|2052253_2053099_+	beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
SQE81509.1|2053696_2054794_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
SQE81510.1|2055165_2055726_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQE81511.1|2055778_2056708_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQE81512.1|2057127_2058507_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQE81513.1|2058626_2059655_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQE81514.1|2059924_2060326_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
SQE81515.1|2060898_2061072_-	exported protein	NA	NA	NA	NA	NA
SQE81516.1|2061450_2062563_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQE81517.1|2062619_2063462_-	exported protein	NA	NA	NA	NA	NA
SQE81518.1|2063458_2064016_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQE81519.1|2064075_2064600_-	membrane protein	NA	NA	NA	NA	NA
SQE81520.1|2064720_2065284_+	Thioredoxin	NA	NA	NA	NA	NA
SQE81521.1|2065349_2066090_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQE81522.1|2066089_2066962_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	4.7e-28
SQE81523.1|2066958_2067639_-	membrane protein	NA	NA	NA	NA	NA
SQE81524.1|2067639_2068536_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQE81525.1|2068532_2068913_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE81526.1|2069176_2069353_-	membrane protein	NA	NA	NA	NA	NA
SQE81527.1|2069893_2071180_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQE81528.1|2071503_2071794_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
SQE81529.1|2071804_2073559_-	MHC class II analog (pseudogene)	NA	NA	NA	NA	NA
SQE81530.1|2073944_2074145_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
SQE81531.1|2075319_2075670_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
SQE81532.1|2076179_2076476_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
SQE81533.1|2077165_2077657_-	Staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
SQE81534.1|2077847_2078603_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQE81535.1|2078614_2078869_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQE81536.1|2079399_2079774_-	phage protein	NA	G4KNR3	Staphylococcus_phage	99.2	1.2e-38
SQE81537.1|2079829_2080117_-	phi PVL ORF 22-like protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
SQE81538.1|2080162_2080315_-	phage protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
SQE81539.1|2080307_2084090_-	phage minor structural, N-terminal region domain protein	NA	A0A1X9H096	Staphylococcus_phage	99.6	0.0e+00
SQE81540.1|2084105_2085590_-	bacteriophage protein	NA	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
SQE81541.1|2085586_2090116_-|tail	TP901 family phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
SQE81542.1|2090172_2090310_-	phage protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
SQE81543.1|2090360_2090711_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
SQE81544.1|2091026_2091671_-|tail	phage major tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
SQE81545.1|2091671_2092079_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
SQE81546.1|2092075_2092480_-	bacteriophage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
SQE81547.1|2092476_2092839_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	99.2	1.7e-64
SQE81548.1|2092822_2093107_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
SQE81549.1|2093096_2093381_-|terminase	phage terminase small subunit	terminase	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
SQE81550.1|2093400_2094546_-|capsid	Phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
SQE81551.1|2094569_2095307_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	C8CH20	Staphylococcus_phage	100.0	2.3e-129
SQE81552.1|2095290_2096478_-	Portal protein, phage associated	NA	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
SQE81553.1|2096493_2098155_-|terminase	Phage terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
2096597:2096615	attR	GTTTTTCTTCTATTTTCAT	NA	NA	NA	NA
SQE81554.1|2098151_2098496_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
SQE81555.1|2098625_2098925_-	phage-associated homing endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
SQE81556.1|2099156_2099573_-	phage transcriptional regulator	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
SQE81557.1|2099600_2099801_-	phage protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
SQE81558.1|2099800_2099950_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
SQE81559.1|2099946_2100153_-	phage protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
SQE81560.1|2100189_2100726_-	dUTPase family protein	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
SQE81561.1|2100718_2101129_-	putative phi PVL-like protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
SQE81562.1|2101125_2101635_-	Uncharacterised protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
SQE81563.1|2101631_2102081_-	YopX-family protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	3.5e-80
SQE81564.1|2102077_2102272_-	phage protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
SQE81565.1|2102268_2102673_-	putative phage PVL protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
SQE81566.1|2102675_2102885_-	Phage protein	NA	A0A2K9VBT9	Staphylococcus_phage	98.5	8.8e-34
SQE81567.1|2102895_2103138_-	phage family protein	NA	A0A2I6PDB4	Staphylococcus_phage	95.0	8.1e-39
SQE81568.1|2103143_2103398_-	phage protein	NA	Q6R831	Staphylococcus_virus	97.6	8.2e-42
SQE81569.1|2103455_2103770_-	PVL ORF-50-like family protein	NA	C5I648	Staphylococcus_phage	99.0	5.9e-42
SQE81570.1|2103770_2103956_-	Protein of uncharacterised function (DUF3113)	NA	D2JGK9	Staphylococcus_phage	98.4	1.6e-26
SQE81571.1|2103955_2104363_-	phage protein	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
SQE81572.1|2104372_2104594_-	putative phi ETA-like protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
SQE81573.1|2104596_2104812_-	hypothetical phage-related protein	NA	A9CR72	Staphylococcus_phage	100.0	2.8e-35
SQE81574.1|2104808_2106050_-	prophage L54a, replicative DNA helicase	NA	C8CGZ3	Staphylococcus_phage	99.8	3.3e-229
SQE81575.1|2106046_2106403_-	phage protein	NA	M9NS37	Staphylococcus_phage	98.3	5.9e-62
SQE81576.1|2106402_2107197_-	phi PV83 orf 20-like protein	NA	Q8SDW2	Staphylococcus_phage	98.5	3.9e-106
SQE81577.1|2107168_2107864_-	phage protein	NA	A0A2H4JAQ0	uncultured_Caudovirales_phage	96.5	8.3e-129
SQE81578.1|2107864_2108416_-	ORF027	NA	A0A2H4PQR4	Staphylococcus_phage	99.5	4.6e-106
SQE81579.1|2108426_2108852_-	Single-stranded DNA-binding protein, phage associated	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
SQE81580.1|2108851_2109475_-	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
SQE81581.1|2109467_2109689_-	phage protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
SQE81582.1|2109698_2109959_-	phage protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
SQE81583.1|2110050_2110212_-	phage protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
SQE81584.1|2110208_2110529_-	Uncharacterized protein conserved in bacteria	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
SQE81585.1|2110587_2111220_+	phage protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
SQE81586.1|2111234_2111375_-	phage protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
SQE81587.1|2111405_2111600_-	Phage protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
SQE81588.1|2111616_2112372_-	anti repressor	NA	A0A0H4J326	Staphylococcus_phage	99.2	9.6e-139
SQE81589.1|2112428_2112968_+	putative phi PVL-like protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
SQE81590.1|2112991_2113252_-	putative phi PVL-like protein	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
SQE81591.1|2113265_2113508_-	phage DNA-binding protein	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
SQE81592.1|2113671_2114388_+	repressor-like protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
SQE81593.1|2114399_2115257_+	HIRAN domain-containing protein	NA	R9QTP0	Staphylococcus_phage	99.6	3.5e-161
SQE81594.1|2115301_2115484_+	Putative cytosolic protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
SQE81595.1|2115583_2116048_+	Uncharacterised protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
SQE81596.1|2116106_2117144_+	DNA integration/recombination/inversion protein	NA	Q38086	Staphylococcus_phage	99.7	1.7e-178
SQE81597.1|2117200_2118025_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
SQE81598.1|2118262_2119279_-	gamma-hemolysin component B	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
SQE81599.1|2119300_2120356_-	Leukocidin S subunit	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
>prophage 9
LS483316	Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1	2869819	2564839	2598126	2869819	transposase,holin	Bacillus_virus(25.0%)	30	NA	NA
SQE82015.1|2564839_2565535_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
SQE82016.1|2565534_2566476_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
SQE82017.1|2566492_2567128_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	G3M9Y4	Bacillus_virus	26.2	9.0e-05
SQE82018.1|2567124_2568351_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
SQE82019.1|2569020_2569620_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQE82020.1|2569799_2571437_+	Amino acid permease	NA	NA	NA	NA	NA
SQE82021.1|2572044_2573214_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	2.2e-12
SQE82022.1|2573364_2574969_+|transposase	transposase IS4 family protein	transposase	A0ZS58	Staphylococcus_virus	44.4	1.5e-128
SQE82023.1|2575305_2576493_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
SQE82024.1|2576888_2577665_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQE82025.1|2577657_2578320_-	Methionine ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.2	6.5e-22
SQE82026.1|2578568_2579645_-	endoglucanase M	NA	NA	NA	NA	NA
SQE82027.1|2579999_2580266_-	addiction module toxin	NA	NA	NA	NA	NA
SQE82028.1|2580265_2580523_-	prevent-host-death family protein	NA	NA	NA	NA	NA
SQE82029.1|2580881_2581337_+	lipoprotein	NA	NA	NA	NA	NA
SQE82030.1|2581504_2583082_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
SQE82031.1|2583276_2584026_+	membrane protein	NA	NA	NA	NA	NA
SQE82032.1|2584249_2585443_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
SQE82033.1|2585454_2586204_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	3.1e-20
SQE82034.1|2586196_2587012_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	30.3	1.8e-13
SQE82035.1|2587008_2587878_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
SQE82036.1|2587874_2588810_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
SQE82037.1|2588822_2590421_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
SQE82038.1|2590563_2591865_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE82039.1|2591857_2592676_-	nicotianamine synthase	NA	NA	NA	NA	NA
SQE82040.1|2592686_2593508_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
SQE82041.1|2594374_2594740_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE82042.1|2595002_2595722_-	Glutamate dehydrogenase	NA	A0A0G2Y8L6	Acanthamoeba_polyphaga_mimivirus	36.5	2.9e-07
SQE82043.1|2596053_2597592_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
SQE82044.1|2597703_2598126_-|transposase	transposase	transposase	NA	NA	NA	NA
