The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	313857	358468	2849927	portal,protease,capsid,terminase,tail,head,integrase	Staphylococcus_phage(92.06%)	64	313747:313764	359207:359224
313747:313764	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
SQE68021.1|313857_315063_-|integrase	phage integrase family protein	integrase	A7YGM7	Staphylococcus_virus	99.5	6.5e-222
SQE68022.1|315188_315803_+	phi PVL ORF 30-like protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
SQE68023.1|315799_315925_-	ORF136	NA	A0A2I6PF02	Staphylococcus_phage	95.1	1.9e-12
SQE68024.1|316175_316760_-	putative lipoprotein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
SQE68025.1|316777_317239_-	pathogenicity island protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
SQE68026.1|317251_317566_-	helix-turn-helix domain-containing protein	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
SQE68027.1|317717_317954_+	Uncharacterised protein	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
SQE68028.1|317967_318744_+	Rha family phage regulatory protein	NA	A0A2I6PD87	Staphylococcus_phage	99.6	9.0e-140
SQE68029.1|318772_318916_+	phage protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
SQE68030.1|318905_319115_-	Uncharacterised protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
SQE68031.1|319170_319416_+	phage protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
SQE68032.1|319384_319750_-	phage protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
SQE68033.1|319804_320020_+	phage protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
SQE68034.1|320044_320308_+	DNA-binding protein	NA	A0A2I6PDM6	Staphylococcus_phage	98.9	1.4e-44
SQE68035.1|320320_320482_+	phage protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
SQE68036.1|320560_320884_+	phage protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
SQE68037.1|320898_321261_+	phage protein	NA	A0A2I6PF03	Staphylococcus_phage	99.2	1.9e-55
SQE68038.1|321257_322424_+	PD-(D/E)XK nuclease superfamily protein	NA	A0A2D1G5B8	Staphylococcus_phage	99.7	1.2e-220
SQE68039.1|322449_323007_+	phage protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
SQE68040.1|323066_325028_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.2	0.0e+00
SQE68041.1|325039_325195_+	Uncharacterised protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
SQE68042.1|325194_325380_+	PV83 orf 23-like protein	NA	A0A0N9BBI1	Staphylococcus_phage	95.1	6.0e-26
SQE68043.1|325380_325740_+	PVL ORF-50-like family	NA	A0A0E3T8L4	Staphylococcus_phage	95.8	2.7e-59
SQE68044.1|325740_325989_+	phage family protein	NA	Q4ZBT7	Staphylococcus_virus	93.6	3.8e-36
SQE68045.1|326003_326396_+	phage protein	NA	A0A2I6PE39	Staphylococcus_phage	100.0	1.6e-68
SQE68046.1|326392_326584_+	phage protein	NA	Q4ZBT5	Staphylococcus_virus	100.0	1.5e-27
SQE68047.1|326583_327015_+	phage protein	NA	Q4ZBT4	Staphylococcus_virus	99.3	1.6e-74
SQE68048.1|327007_327256_+	Phage protein	NA	A0A0E3T8I2	Staphylococcus_phage	93.9	1.0e-36
SQE68049.1|327248_327785_+	dUTPase family protein	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
SQE68050.1|327821_328064_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68051.1|328060_328297_+	phage protein	NA	C8CH06	Staphylococcus_phage	92.3	1.9e-32
SQE68052.1|328321_328558_+	phage protein	NA	A7TWB3	Staphylococcus_phage	93.6	7.6e-34
SQE68053.1|328547_328937_+	phage membrane protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
SQE68054.1|328933_329086_+	transcriptional activator rinB-like protein	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
SQE68055.1|329153_329354_+	putative exported phage protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
SQE68056.1|329405_331853_+	E family protein	NA	R4WAL1	Staphylococcus_phage	99.0	0.0e+00
SQE68057.1|332193_332484_+	VRR-NUC domain-containing protein	NA	A0A2I6PDQ7	Staphylococcus_phage	100.0	4.9e-51
SQE68058.1|332473_333832_+	putative DNA helicase	NA	A0A2I6PDQ0	Staphylococcus_phage	99.8	9.5e-262
SQE68059.1|333844_334282_+	phage regulatory protein	NA	A0A2I6PDN2	Staphylococcus_phage	100.0	6.1e-77
SQE68060.1|334443_334758_+	HNH endonuclease family protein	NA	A0A2I6PDR3	Staphylococcus_phage	100.0	8.5e-57
SQE68061.1|334884_335190_+|terminase	Phage terminase small subunit	terminase	A0A2I6PDN6	Staphylococcus_phage	100.0	3.7e-49
SQE68062.1|335179_336871_+|terminase	terminase large subunit	terminase	A0A2I6PDP8	Staphylococcus_phage	99.8	0.0e+00
SQE68063.1|336875_338114_+|portal	portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	1.5e-234
SQE68064.1|338097_338871_+|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	3.2e-137
SQE68065.1|338882_340046_+|capsid	putative phage capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
SQE68066.1|340114_340393_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
SQE68067.1|340404_340737_+	phage protein	NA	A0A2I6PEH8	Staphylococcus_phage	100.0	3.1e-57
SQE68068.1|340733_341135_+	putative phiSLT protein	NA	R4WAN5	Staphylococcus_phage	100.0	8.1e-68
SQE68069.1|341135_341531_+	phage protein	NA	R4WAV1	Staphylococcus_phage	99.2	4.4e-66
SQE68070.1|341565_342207_+|tail	major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	98.1	5.5e-119
SQE68071.1|342298_342754_+|tail	major tail protein	tail	Q9B0D4	Staphylococcus_phage	96.7	4.5e-75
SQE68072.1|342811_343162_+	putative gp48	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
SQE68073.1|343203_343362_+	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
SQE68074.1|343375_349576_+	TP901 family prophage L54a	NA	U5U762	Staphylococcus_phage	98.6	0.0e+00
SQE68075.1|349575_350400_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
SQE68076.1|350408_351992_+|tail	prophage endopeptidase tail family protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
SQE68077.1|351991_352282_+	putative gp53	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
SQE68078.1|352297_354208_+	putative minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
SQE68079.1|354207_355674_+|tail	putative phage tail protein	tail	A0A2I6PE72	Staphylococcus_phage	100.0	1.5e-273
SQE68080.1|355673_356063_+	phage protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
SQE68081.1|356055_356220_+	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
SQE68082.1|356265_356565_+	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
SQE68083.1|356700_357003_+	SPP1 family prophage L54a	NA	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
SQE68084.1|357013_358468_+	amidase	NA	A0A2I6PF47	Staphylococcus_phage	99.2	1.1e-287
359207:359224	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	403188	418719	2849927	terminase,transposase	Staphylococcus_phage(100.0%)	27	NA	NA
SQE68127.1|403188_403380_-	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
SQE68128.1|403623_403920_+	30S ribosomalprotein S6p	NA	NA	NA	NA	NA
SQE68129.1|403940_404444_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
SQE68130.1|404495_404738_+	30S ribosomalprotein S18p	NA	NA	NA	NA	NA
SQE68131.1|404976_405876_-	Abortive infection bacteriophage resistance protein	NA	NA	NA	NA	NA
SQE68132.1|405877_407092_-	Integrase	NA	Q4ZE80	Staphylococcus_phage	96.5	3.6e-220
SQE68133.1|407040_407259_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68134.1|407370_408066_-	Xre family transcriptional regulator	NA	NA	NA	NA	NA
SQE68135.1|408210_408423_+	Ps3 protein 14 family transcriptional regulator	NA	NA	NA	NA	NA
SQE68136.1|408455_408728_+	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	88.4	3.8e-37
SQE68137.1|408739_408886_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
SQE68138.1|408878_409088_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
SQE68139.1|409090_409390_+	mobile element-associated DUF1474-containing protein, putative	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	5.1e-19
SQE68140.1|409464_411081_+	bacteriophage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.2	8.1e-244
SQE68141.1|411256_412060_+	pathogenicity island replication protein	NA	Q4ZE69	Staphylococcus_phage	94.8	1.4e-148
SQE68142.1|412046_412319_+	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	92.2	1.7e-40
SQE68143.1|412320_412962_+	mobile element-associated protein, putative	NA	Q4ZE67	Staphylococcus_phage	95.3	9.1e-114
SQE68144.1|413405_413750_+	mobile element-associated protein, putative	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
SQE68145.1|413784_414363_+	mobile element-associated protein, putative	NA	A0A1W6JQG0	Staphylococcus_phage	100.0	9.2e-81
SQE68146.1|414362_414539_+	mobile-element associated protein, putative	NA	A0A1W6JQJ5	Staphylococcus_phage	100.0	7.7e-23
SQE68147.1|414591_415119_+	pathogenicity island protein	NA	A0A1W6JQH7	Staphylococcus_phage	95.4	4.3e-85
SQE68148.1|415121_415463_+|transposase	transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	96.5	9.3e-57
SQE68149.1|415459_415975_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	88.4	1.1e-74
SQE68150.1|416192_416525_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68151.1|416563_417280_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68152.1|417315_417909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68153.1|418164_418719_-	secreted protein Ear	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	3.7e-71
>prophage 3
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	772551	780370	2849927		Hokovirus(16.67%)	10	NA	NA
SQE68469.1|772551_773607_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
SQE68470.1|773606_774293_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQE68471.1|774267_774741_-	DoxX family protein	NA	NA	NA	NA	NA
SQE68472.1|775081_775522_-	lipoprotein	NA	NA	NA	NA	NA
SQE68473.1|775801_776386_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68474.1|776484_777198_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQE68475.1|777201_777621_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQE68476.1|777622_778291_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQE68477.1|778641_779235_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
SQE68478.1|779218_780370_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 4
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	792342	806959	2849927		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
SQE68487.1|792342_793401_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
SQE68488.1|793695_794238_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE68489.1|794917_795835_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
SQE68490.1|796104_797610_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQE68491.1|797950_798451_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQE68492.1|798470_799337_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE68493.1|800137_800536_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQE68494.1|800498_802604_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQE68495.1|802721_803693_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQE68496.1|804244_805258_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
SQE68497.1|805244_806201_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
SQE68498.1|806197_806959_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 5
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	891001	937013	2849927	portal,capsid,terminase,tail,head	Staphylococcus_phage(85.29%)	71	NA	NA
SQE68580.1|891001_892243_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	44.8	6.3e-111
SQE68581.1|892232_892697_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA	NA
SQE68582.1|892850_894248_+	Scaffold protein sufB	NA	NA	NA	NA	NA
SQE68583.1|894315_895365_-	Integrase	NA	A1KWY3	Staphylococcus_virus	99.7	7.7e-203
SQE68584.1|895477_895678_+	excisionase-like protein	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
SQE68585.1|895614_896520_-	phage protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
SQE68586.1|896551_897277_-	phage protein	NA	A0A0F6N4L7	Staphylococcus_phage	99.6	2.9e-124
SQE68587.1|897304_897979_-	phage protein	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
SQE68588.1|897995_898328_-	Transcriptional regulator, Cro/CI family helix-turn-helix domain protein	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
SQE68589.1|898590_898785_+	helix-turn-helix domain protein	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
SQE68590.1|898784_899552_+	Antirepressor	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
SQE68591.1|899552_899777_+	phage protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
SQE68592.1|899816_900266_+	phi PV83 orf 10-like protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
SQE68593.1|900279_900501_+	phage protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
SQE68594.1|900493_900655_+	phage protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
SQE68595.1|900746_901007_+	phage protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
SQE68596.1|901016_901238_+	phage protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
SQE68597.1|901230_901854_+	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
SQE68598.1|901853_902282_+	Single-stranded DNA-binding protein, phage associated	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
SQE68599.1|902295_902970_+	phage protein	NA	C8CGZ0	Staphylococcus_phage	98.7	2.0e-127
SQE68600.1|902966_903116_+	Uncharacterised protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
SQE68601.1|903108_903390_-	Uncharacterised protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
SQE68602.1|903455_904226_+	phi ETA orf 22-like protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
SQE68603.1|904235_905015_+	phage like DNA replication protein dnaC	NA	A0A1X9H042	Staphylococcus_phage	98.8	1.6e-144
SQE68604.1|905008_905167_+	Uncharacterised protein	NA	A0A2I6PDX0	Staphylococcus_phage	94.2	2.2e-21
SQE68605.1|905179_905401_+	putative phi ETA-like protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
SQE68606.1|905410_905818_+	phage protein	NA	A9CR74	Staphylococcus_phage	97.8	4.2e-72
SQE68607.1|905817_906003_+	Protein of uncharacterised function (DUF3113)	NA	M9NSS9	Staphylococcus_phage	96.7	1.6e-26
SQE68608.1|906003_906366_+	phage-like protein	NA	B7T0B4	Staphylococcus_virus	75.8	2.1e-46
SQE68609.1|906365_906620_+	phage protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
SQE68610.1|906625_906868_+	phage conserved Open Reading Frame 51	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.1e-40
SQE68611.1|906881_907088_+	Phage protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
SQE68612.1|907090_907495_+	putative phage PVL protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	1.6e-71
SQE68613.1|907491_907686_+	phage protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
SQE68614.1|907682_908135_+	YopX-family protein	NA	A0A0E3XBJ3	Staphylococcus_phage	100.0	1.4e-81
SQE68615.1|908131_908635_+	Uncharacterised protein	NA	A0A2H4JGK2	uncultured_Caudovirales_phage	95.8	1.5e-87
SQE68616.1|908637_908835_+	Phage protein	NA	A0A0E3TAH1	Staphylococcus_phage	98.5	6.1e-29
SQE68617.1|908827_909076_+	Phage protein	NA	Q4ZBT3	Staphylococcus_virus	97.6	3.5e-37
SQE68618.1|909068_909602_+	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	98.3	6.0e-95
SQE68619.1|909638_909923_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE68620.1|909971_910496_+	Uncharacterised protein	NA	A0A0K1LKF9	Staphylococcus_phage	96.6	2.9e-86
SQE68621.1|910542_910716_+	transcriptional activator RinB family protein	NA	A0A0E3TAH3	Staphylococcus_phage	100.0	1.7e-22
SQE68622.1|910716_911118_+	putative phi PVL-like protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
SQE68623.1|911470_911965_+	phage protein	NA	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
SQE68624.1|911957_913181_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0A0E3XCW6	Staphylococcus_phage	100.0	1.5e-242
SQE68625.1|913177_914602_+|portal	phage portal protein, SPP1 family	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
SQE68626.1|914570_915521_+|head	phage minor head protein	head	A0A0E3TAH5	Staphylococcus_phage	99.7	1.2e-175
SQE68627.1|915616_916201_+	phage protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
SQE68628.1|916217_917132_+|capsid	phage major capsid protein, HK97 family	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
SQE68629.1|917143_917287_+	phage protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
SQE68630.1|917292_917643_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0E3T9I9	Staphylococcus_phage	100.0	1.9e-60
SQE68631.1|917654_917990_+|head,tail	putative head-tail adaptor	head,tail	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
SQE68632.1|917976_918384_+	phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
SQE68633.1|918396_918822_+	phage protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
SQE68634.1|918822_919380_+|tail	putative tail protein	tail	A0A0E3XD60	Staphylococcus_phage	100.0	1.8e-102
SQE68635.1|919446_919953_+	phage family protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
SQE68636.1|920132_920282_+	phage protein	NA	A0A0E3TAI0	Staphylococcus_phage	100.0	2.8e-18
SQE68637.1|920285_923171_+	phage tape measure protein	NA	A0A0E3T8J3	Staphylococcus_phage	100.0	0.0e+00
SQE68638.1|923185_924127_+|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
SQE68639.1|924137_926024_+	GDSL-like Lipase/Acylhydrolase family protein	NA	A0A0E3XBK1	Staphylococcus_phage	100.0	0.0e+00
SQE68640.1|926036_927935_+	phage protein	NA	A0A0E3T9J5	Staphylococcus_phage	100.0	0.0e+00
SQE68641.1|927934_929758_+	phiETA ORF57-like protein	NA	A0A0E3TAI3	Staphylococcus_phage	100.0	0.0e+00
SQE68642.1|929757_930135_+	SLT orf 129-like protein	NA	A0A0E3T8J6	Staphylococcus_phage	100.0	9.6e-55
SQE68643.1|930135_930312_+	phage protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
SQE68644.1|930352_930652_+	phage protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
SQE68645.1|930788_932663_+	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA	A0A0E3T9J6	Staphylococcus_phage	100.0	0.0e+00
SQE68646.1|932675_933914_+	Tail fiber protein	NA	A0A0E3TAI6	Staphylococcus_phage	100.0	1.2e-210
SQE68647.1|933919_934315_+	phi ETA orf 63-like protein	NA	A0A0E3T8J8	Staphylococcus_phage	100.0	1.2e-68
SQE68648.1|934370_934646_+	Holin	NA	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
SQE68649.1|934632_936045_+	Lytic enzyme, amidase	NA	A0A0E3TAN9	Staphylococcus_phage	99.8	9.8e-286
SQE68650.1|936170_937013_+	exfoliative toxin B	NA	A0A0E3T8P7	Staphylococcus_phage	100.0	2.3e-157
>prophage 6
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	1092528	1101001	2849927		Synechococcus_phage(33.33%)	9	NA	NA
SQE68793.1|1092528_1093011_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
SQE68794.1|1092997_1094122_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQE68795.1|1094125_1094830_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
SQE68796.1|1094829_1095093_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQE68797.1|1095094_1095766_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQE68798.1|1095758_1097948_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
SQE68799.1|1097926_1099411_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
SQE68800.1|1099403_1100432_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
SQE68801.1|1100434_1101001_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	1330606	1393410	2849927	portal,capsid,terminase,transposase,tail,tRNA,head,integrase,holin	Staphylococcus_phage(47.92%)	75	1357258:1357295	1392004:1392041
SQE69009.1|1330606_1332253_-|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
SQE69010.1|1332627_1332843_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69011.1|1333016_1333814_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
SQE69012.1|1333953_1335714_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQE69013.1|1335714_1336581_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
SQE69014.1|1336674_1336968_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQE69015.1|1337101_1338646_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
SQE69016.1|1338646_1339012_+	membrane protein	NA	NA	NA	NA	NA
SQE69017.1|1339038_1339530_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
SQE69018.1|1339832_1342451_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
SQE69019.1|1342463_1344473_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
SQE69020.1|1344487_1345021_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
SQE69021.1|1345495_1346314_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
SQE69022.1|1346442_1347939_+	glycerol kinase	NA	NA	NA	NA	NA
SQE69023.1|1348096_1349770_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE69024.1|1349916_1350834_+	hydrolase	NA	NA	NA	NA	NA
SQE69025.1|1350851_1351787_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE69026.1|1351801_1352035_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
SQE69027.1|1352256_1352733_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
SQE69028.1|1352844_1354083_+	GTP-binding protein	NA	NA	NA	NA	NA
SQE69029.1|1354101_1355340_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
SQE69030.1|1355582_1355951_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
SQE69031.1|1355969_1357310_+	glutamine synthetase	NA	NA	NA	NA	NA
1357258:1357295	attL	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
SQE69032.1|1357449_1358577_-|integrase	integrase family protein	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
SQE69033.1|1358629_1359325_-	host cell surface-exposed lipofamily protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
SQE69034.1|1359336_1359720_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69035.1|1359866_1360259_-	helix-turn-helix family protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
SQE69036.1|1360426_1360645_+	regulatory protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
SQE69037.1|1360671_1360947_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69038.1|1360951_1361086_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69039.1|1361116_1361236_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69040.1|1361211_1361382_+	Uncharacterised protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
SQE69041.1|1361370_1361577_-	Uncharacterised protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
SQE69042.1|1361637_1362321_+	prophage, antirepressor, putative	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
SQE69043.1|1362419_1362596_+	phage protein	NA	E9LT78	Staphylococcus_phage	70.4	1.9e-13
SQE69044.1|1362666_1362984_+	phage protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
SQE69045.1|1362973_1363240_+	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
SQE69046.1|1363244_1363781_+	glycosyl hydrolases 17 family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
SQE69047.1|1363781_1364561_+	bacterial dnaA family protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
SQE69048.1|1364587_1365136_+	Single stranded DNA-binding protein,phage-associated	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
SQE69049.1|1365148_1366051_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
SQE69050.1|1366051_1366342_+	PVL orf 51-like protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
SQE69051.1|1366356_1366515_+	phage protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
SQE69052.1|1366520_1366832_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69053.1|1366824_1367355_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	A0A1P8VVP1	Streptococcus_phage	39.1	1.2e-21
SQE69054.1|1367589_1368054_+	Uncharacterised protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
SQE69055.1|1368054_1368288_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69056.1|1368330_1368819_+	sigma-70, region 4 family protein	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
SQE69057.1|1368971_1369400_+	homeo-like domain protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
SQE69058.1|1369386_1370661_+|terminase	phage terminase, large subunit, PBSX family	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
SQE69059.1|1370673_1372122_+|portal	phage portal protein, SPP1 family	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
SQE69060.1|1372111_1373641_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	Q4ZE35	Staphylococcus_virus	61.3	2.8e-108
SQE69061.1|1373653_1373776_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69062.1|1373935_1374514_+	Phage protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
SQE69063.1|1374532_1375444_+|capsid	phage major capsid protein Fam0118	capsid	Q4ZE33	Staphylococcus_virus	59.7	6.5e-97
SQE69064.1|1375521_1375995_+|tail	phage phiSLT minor tail protein	tail	A0A2H4J9T3	uncultured_Caudovirales_phage	31.6	9.7e-12
SQE69065.1|1376010_1376337_+	phi 11 orf36	NA	Q4ZE31	Staphylococcus_virus	56.4	2.1e-26
SQE69066.1|1376336_1376642_+	phage protein	NA	Q4ZE30	Staphylococcus_virus	40.6	6.4e-17
SQE69067.1|1376642_1376993_+	phage protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
SQE69068.1|1377002_1377398_+	phi 11 orf38	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
SQE69069.1|1377409_1378009_+|tail	phage tail protein	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
SQE69070.1|1378070_1378415_+	phage protein	NA	A0A1J0MFH0	Staphylococcus_phage	58.9	7.7e-35
SQE69071.1|1378435_1378819_+	phi 11 orf41	NA	Q4ZE25	Staphylococcus_virus	72.3	2.4e-37
SQE69072.1|1378830_1382001_+|tail	phage tail length tape-measure protein	tail	Q4ZE24	Staphylococcus_virus	54.5	1.6e-94
SQE69073.1|1382015_1382951_+	phi 11 orf43	NA	A0A1J0MF79	Staphylococcus_phage	55.9	2.1e-98
SQE69074.1|1382959_1384645_+	phage minor structural protein	NA	Q4ZE19	Staphylococcus_virus	46.5	1.4e-108
SQE69075.1|1384662_1385676_+	phage minor structural protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.6	6.5e-98
SQE69076.1|1385694_1387092_+	Uncharacterised protein	NA	A0A1J0MFK8	Staphylococcus_phage	44.7	2.6e-105
SQE69077.1|1387104_1387494_+|holin	holin	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	5.3e-16
SQE69078.1|1387558_1388479_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.8	1.0e-65
SQE69079.1|1389364_1390300_+	Abortive infection bacteriophage resistance protein	NA	A0A059NT88	Lactococcus_phage	44.0	5.3e-70
SQE69080.1|1390747_1391164_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69081.1|1391327_1391435_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE69082.1|1391602_1391815_+	Uncharacterised protein	NA	A0A1W6JNK0	Staphylococcus_phage	75.4	1.1e-20
SQE69083.1|1392069_1393410_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MF61	Staphylococcus_phage	58.9	1.1e-140
1392004:1392041	attR	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
>prophage 8
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	1669968	1678298	2849927	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQE69319.1|1669968_1670754_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.0e-18
SQE69320.1|1670879_1671770_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
SQE69321.1|1671779_1673126_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
SQE69322.1|1673239_1674340_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
SQE69323.1|1674342_1675020_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQE69324.1|1675150_1676257_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQE69325.1|1676480_1678298_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 9
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	1746131	1755174	2849927	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQE69395.1|1746131_1746650_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
SQE69396.1|1746671_1748945_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
SQE69397.1|1749147_1751427_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQE69398.1|1751701_1751962_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQE69399.1|1751980_1753120_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
SQE69400.1|1753142_1754168_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE69401.1|1754169_1755174_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	1881070	1927473	2849927	protease,tRNA	Staphylococcus_phage(92.11%)	44	NA	NA
SQE69505.1|1881070_1887631_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	96.5	5.0e-300
SQE69506.1|1887956_1888268_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
SQE69507.1|1888289_1890707_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
SQE69508.1|1890994_1892176_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
SQE69509.1|1892285_1893239_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
SQE69510.1|1893235_1893799_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
SQE69511.1|1893918_1894320_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQE69512.1|1894890_1895718_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQE69513.1|1895951_1896953_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
SQE69514.1|1897074_1897539_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
SQE69515.1|1897551_1898733_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
SQE69516.1|1898743_1899376_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
SQE69517.1|1899382_1900426_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
SQE69518.1|1900906_1902409_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
SQE69519.1|1902931_1903246_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
SQE69520.1|1903245_1904538_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
SQE69521.1|1904555_1904951_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
SQE69522.1|1905245_1906100_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQE69523.1|1906375_1906600_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE69524.1|1906798_1907269_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
SQE69525.1|1907381_1907825_+	comK family protein	NA	NA	NA	NA	NA
SQE69526.1|1907811_1908255_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
SQE69527.1|1908550_1909186_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQE69528.1|1909625_1910339_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQE69529.1|1910598_1910901_+	membrane protein	NA	NA	NA	NA	NA
SQE69530.1|1911156_1911522_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
SQE69531.1|1911518_1911872_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
SQE69532.1|1912254_1913088_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
SQE69533.1|1913299_1914208_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
SQE69534.1|1914332_1915526_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
SQE69535.1|1915895_1917488_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
SQE69536.1|1917865_1918636_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.3e-143
SQE69537.1|1918616_1919096_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
SQE69538.1|1919155_1919413_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
SQE69539.1|1919409_1920411_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
SQE69540.1|1920415_1921894_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
SQE69541.1|1922052_1922535_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	3.5e-78
SQE69542.1|1922846_1923461_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	98.5	1.1e-47
SQE69543.1|1923541_1924537_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
SQE69544.1|1924610_1925237_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
SQE69545.1|1925322_1926006_+	staphylococcal enterotoxin Q	NA	A0EX09	Staphylococcus_phage	33.5	3.8e-25
SQE69546.1|1926032_1926785_+	enterotoxin C-bovine	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
SQE69547.1|1926916_1927141_-	Uncharacterised protein	NA	A0A2H4PQN8	Staphylococcus_phage	97.3	1.5e-31
SQE69548.1|1927272_1927473_-	Uncharacterised protein	NA	A0A2H4PQN8	Staphylococcus_phage	97.1	1.3e-10
>prophage 11
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	2849927	2027264	2117790	2849927	protease,capsid,terminase,tail,head,tRNA,holin	Staphylococcus_phage(91.14%)	108	NA	NA
SQE69637.1|2027264_2028692_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SQE69638.1|2028704_2030162_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SQE69639.1|2030163_2030466_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQE69640.1|2030832_2032371_+	Sodium/proline symporter	NA	NA	NA	NA	NA
SQE69641.1|2032459_2033659_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
SQE69642.1|2033671_2035675_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
SQE69643.1|2035678_2037871_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
SQE69644.1|2037867_2038560_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
SQE69645.1|2038731_2039034_-	His repressor	NA	NA	NA	NA	NA
SQE69646.1|2039142_2040438_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
SQE69647.1|2041298_2042465_+	Staphopain A precursor	NA	NA	NA	NA	NA
SQE69648.1|2042495_2042822_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQE69649.1|2043265_2043868_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
SQE69650.1|2044138_2044960_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
SQE69651.1|2044952_2046422_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
SQE69652.1|2046605_2047682_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQE69653.1|2047701_2048496_+	ACT domain protein	NA	NA	NA	NA	NA
SQE69654.1|2048685_2050248_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQE69655.1|2050451_2051549_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
SQE69656.1|2051920_2052481_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQE69657.1|2052533_2053463_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQE69658.1|2053880_2055260_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQE69659.1|2055379_2056408_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQE69660.1|2056677_2057079_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
SQE69661.1|2057651_2057825_-	exported protein	NA	NA	NA	NA	NA
SQE69662.1|2058203_2059316_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQE69663.1|2059372_2060215_-	exported protein	NA	NA	NA	NA	NA
SQE69664.1|2060211_2060769_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQE69665.1|2060828_2061353_-	membrane protein	NA	NA	NA	NA	NA
SQE69666.1|2061473_2062037_+	Thioredoxin	NA	NA	NA	NA	NA
SQE69667.1|2062102_2062843_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQE69668.1|2062842_2063715_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
SQE69669.1|2063711_2064392_-	membrane protein	NA	NA	NA	NA	NA
SQE69670.1|2064392_2065289_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQE69671.1|2065285_2065666_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE69672.1|2065924_2066101_-	membrane protein	NA	NA	NA	NA	NA
SQE69673.1|2066642_2067929_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQE69674.1|2068252_2068543_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA	NA
SQE69675.1|2068553_2070302_-	MHC class II analog (pseudogene)	NA	NA	NA	NA	NA
SQE69676.1|2070687_2070888_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
SQE69677.1|2072062_2072413_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
SQE69678.1|2073097_2073547_+	Chemotaxis-inhibiting protein CHIPS, phage associated	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
SQE69679.1|2073641_2073938_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
SQE69680.1|2074626_2075118_-	Staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
SQE69681.1|2075308_2076064_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQE69682.1|2076075_2076330_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQE69683.1|2076867_2077098_-	phage protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
SQE69684.1|2077221_2077509_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
SQE69685.1|2077555_2077708_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
SQE69686.1|2077697_2081483_-	phage minor structural protein	NA	C8CH32	Staphylococcus_phage	99.7	0.0e+00
SQE69687.1|2081498_2082983_-	bacteriophage protein	NA	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
SQE69688.1|2082979_2087524_-|tail	bacteriophage tail tape measure protein, TP901 family	tail	A0A075M036	Staphylococcus_phage	99.1	0.0e+00
SQE69689.1|2087580_2087718_-	phage protein	NA	A0A068A227	Staphylococcus_phage	100.0	3.4e-18
SQE69690.1|2087768_2088119_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
SQE69691.1|2088434_2089079_-|tail	phage major tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
SQE69692.1|2089079_2089487_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
SQE69693.1|2089483_2089888_-	bacteriophage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
SQE69694.1|2089884_2090247_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
SQE69695.1|2090230_2090515_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
SQE69696.1|2090504_2090789_-|terminase	phage terminase small subunit	terminase	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
SQE69697.1|2090808_2091954_-|capsid	Phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	3.6e-214
SQE69698.1|2091977_2092715_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
SQE69699.1|2092698_2093886_-	Portal protein, phage associated	NA	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
SQE69700.1|2093901_2095563_-|terminase	Phage terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
SQE69701.1|2095559_2095904_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
SQE69702.1|2096034_2096331_-	phage-associated homing endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	1.3e-51
SQE69703.1|2096565_2096982_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
SQE69704.1|2097009_2097213_-	phage protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.8e-28
SQE69705.1|2097209_2097464_-	Uncharacterised protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.5e-39
SQE69706.1|2097442_2097859_-	Uncharacterised protein	NA	D2JLD8	Staphylococcus_phage	100.0	7.8e-66
SQE69707.1|2097865_2098018_-	Uncharacterised protein	NA	A0A2I6PDV2	Staphylococcus_phage	100.0	5.4e-17
SQE69708.1|2098017_2098167_-	transcriptional activator RinB	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
SQE69709.1|2098163_2098370_-	phage protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
SQE69710.1|2098406_2098943_-	dUTPase family protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
SQE69711.1|2098935_2099184_-	Phage protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
SQE69712.1|2099176_2099461_-	phage protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
SQE69713.1|2099457_2099907_-	YopX-family protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
SQE69714.1|2099903_2100098_-	phage protein	NA	A0A2I6PE33	Staphylococcus_phage	100.0	2.5e-27
SQE69715.1|2100094_2100481_-	phage protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
SQE69716.1|2100494_2100737_-	phage family protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
SQE69717.1|2100740_2101109_-	Phage protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
SQE69718.1|2101121_2101526_-	phage protein	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
SQE69719.1|2101534_2101753_-	phage protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
SQE69720.1|2101759_2102653_-	Phage protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
SQE69721.1|2102682_2103153_-	Single-stranded DNA-binding protein, phage associated	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
SQE69722.1|2103153_2103639_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
SQE69723.1|2103851_2104772_-	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
SQE69724.1|2104773_2106717_-	Uncharacterized conserved protein	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
SQE69725.1|2106725_2106989_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
SQE69726.1|2106997_2107258_-	Putative cytosolic protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
SQE69727.1|2107262_2107565_-	Putative cytosolic protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
SQE69728.1|2107659_2107821_-	phage protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
SQE69729.1|2107817_2108141_-	Uncharacterized protein conserved in bacteria	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
SQE69730.1|2108195_2108576_+	Phage protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
SQE69731.1|2108562_2108760_-	Phage protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
SQE69732.1|2108775_2109528_-	antirepressor	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
SQE69733.1|2109578_2109908_+	Phage protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
SQE69734.1|2109896_2110112_-	phage protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
SQE69735.1|2110127_2110391_-	putative phage transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
SQE69736.1|2110523_2111237_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
SQE69737.1|2111252_2112185_+	DNA polymerase III subunit alpha	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
SQE69738.1|2112190_2112532_+	phage protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
SQE69739.1|2112735_2112918_+	Putative cytosolic protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
SQE69740.1|2113017_2113482_+	Uncharacterised protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
SQE69741.1|2113540_2114578_+	DNA integration/recombination/inversion protein	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
SQE69742.1|2114634_2115459_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
SQE69743.1|2115696_2116713_-	gamma-hemolysin component B	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	8.7e-26
SQE69744.1|2116734_2117790_-	Leukocidin S subunit	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
