assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	1	156502-156669	1	CRISPRCasFinder	no	cas9,cas1,cas2	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Type II-B, Type II-B,Type II-C,Type II-A, or Type II-C?	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC	36	0	0	NA	NA	NA	2	2	TypeII-B,TypeII-B,TypeII-C,TypeII-A,orTypeII-C?	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA|53aa|up_4|LS483312.1_149994_150153_-,NA|334aa|down_3|LS483312.1_161374_162376_+,NA|235aa|down_4|LS483312.1_162389_163094_+,NA|74aa|down_5|LS483312.1_163308_163530_+	NA|189aa|up_9|LS483312.1_143019_143586_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|138aa|up_8|LS483312.1_143578_143992_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|639aa|up_7|LS483312.1_144561_146478_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|501aa|up_6|LS483312.1_146676_148179_-	PRK06184, PRK06184, hypothetical protein; Provisional	NA|453aa|up_5|LS483312.1_148491_149850_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|53aa|up_4|LS483312.1_149994_150153_-	NA	NA|243aa|up_3|LS483312.1_150466_151195_+	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|871aa|up_2|LS483312.1_151208_153821_+	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|267aa|up_1|LS483312.1_153897_154698_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|453aa|up_0|LS483312.1_154827_156186_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	cas9|1055aa|down_0|LS483312.1_156979_160144_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|301aa|down_1|LS483312.1_160146_161049_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|down_2|LS483312.1_161053_161362_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|334aa|down_3|LS483312.1_161374_162376_+	NA	NA|235aa|down_4|LS483312.1_162389_163094_+	NA	NA|74aa|down_5|LS483312.1_163308_163530_+	NA	NA|534aa|down_6|LS483312.1_164043_165645_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|314aa|down_7|LS483312.1_165657_166599_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_8|LS483312.1_166589_167459_+	TIGR02790, Nickel_transport_system_permease_protein_nikC	NA|272aa|down_9|LS483312.1_167455_168271_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2	227587-227733	1,2	PILER-CR,CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	CCCATCGGTGGGGCCCCACCCCAACTTGCTTTGCTTGACGAAATGCTTTT,TGTTGGGGCCCACCCCAACTTGC	50,23	2	11	227637-227659|227637-227659|227637-227659|227637-227659|227637-227659|227637-227659|227637-227659|227637-227659|227637-227659|227637-227659|227656-227688	LS483312.1_1200494-1200472|LS483312.1_1503228-1503250|LS483312.1_2472517-2472495|LS483312.1_258135-258113|LS483312.1_448227-448205|LS483312.1_448284-448262|LS483312.1_1386520-1386542|LS483312.1_1773359-1773337|LS483312.1_1788430-1788408|LS483312.1_595055-595033|LS483312.1_2125136-2125104	NA:NA	2,1	2	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA|174aa|up_3|LS483312.1_224146_224668_-,NA|174aa|down_1|LS483312.1_229583_230105_+,NA|107aa|down_3|LS483312.1_231582_231903_+,NA|90aa|down_4|LS483312.1_231966_232236_+,NA|193aa|down_7|LS483312.1_234403_234982_-	NA|317aa|up_9|LS483312.1_218443_219394_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|257aa|up_8|LS483312.1_219390_220161_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|239aa|up_7|LS483312.1_220184_220901_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|208aa|up_6|LS483312.1_220887_221511_+	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters	NA|547aa|up_5|LS483312.1_221700_223341_-	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]	NA|160aa|up_4|LS483312.1_223469_223949_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|174aa|up_3|LS483312.1_224146_224668_-	NA	NA|232aa|up_2|LS483312.1_224946_225642_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|256aa|up_1|LS483312.1_225643_226411_+	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|172aa|up_0|LS483312.1_226599_227115_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|469aa|down_0|LS483312.1_228134_229541_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|174aa|down_1|LS483312.1_229583_230105_+	NA	NA|448aa|down_2|LS483312.1_230220_231564_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|107aa|down_3|LS483312.1_231582_231903_+	NA	NA|90aa|down_4|LS483312.1_231966_232236_+	NA	NA|266aa|down_5|LS483312.1_232609_233407_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|252aa|down_6|LS483312.1_233544_234300_-	PRK12826, PRK12826, SDR family oxidoreductase	NA|193aa|down_7|LS483312.1_234403_234982_-	NA	NA|512aa|down_8|LS483312.1_235229_236765_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|256aa|down_9|LS483312.1_236970_237738_-	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	3	241652-241736	3	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	TTTTAGAAATTCTCTTTGTTGGGGCCC	27	1	1	241679-241709	LS483312.1_386289-386319	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA|107aa|up_9|LS483312.1_231582_231903_+,NA|90aa|up_8|LS483312.1_231966_232236_+,NA|193aa|up_5|LS483312.1_234403_234982_-,NA|94aa|down_5|LS483312.1_250217_250499_+	NA|107aa|up_9|LS483312.1_231582_231903_+	NA	NA|90aa|up_8|LS483312.1_231966_232236_+	NA	NA|266aa|up_7|LS483312.1_232609_233407_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|252aa|up_6|LS483312.1_233544_234300_-	PRK12826, PRK12826, SDR family oxidoreductase	NA|193aa|up_5|LS483312.1_234403_234982_-	NA	NA|512aa|up_4|LS483312.1_235229_236765_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|256aa|up_3|LS483312.1_236970_237738_-	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR	NA|478aa|up_2|LS483312.1_237761_239195_-	cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC	NA|356aa|up_1|LS483312.1_239207_240275_-	pfam04443, LuxE, Acyl-protein synthetase, LuxE	NA|191aa|up_0|LS483312.1_240776_241349_+	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|461aa|down_0|LS483312.1_241780_243163_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|1011aa|down_1|LS483312.1_243169_246202_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|307aa|down_2|LS483312.1_246279_247200_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|171aa|down_3|LS483312.1_247495_248008_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|398aa|down_4|LS483312.1_248520_249714_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|94aa|down_5|LS483312.1_250217_250499_+	NA	NA|451aa|down_6|LS483312.1_251024_252377_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|316aa|down_7|LS483312.1_252465_253413_+	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|347aa|down_8|LS483312.1_253428_254469_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|431aa|down_9|LS483312.1_254486_255779_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	4	680913-681000	4	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	CTGTGCTTGTGGAATTTCTTATCGAAATTCT	31	1	13	680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969|680944-680969	LS483312.1_448258-448233|LS483312.1_1773448-1773423|LS483312.1_1773505-1773480|LS483312.1_1792455-1792480|LS483312.1_116038-116013|LS483312.1_258109-258084|LS483312.1_764410-764385|LS483312.1_764467-764442|LS483312.1_764524-764499|LS483312.1_2061185-2061210|LS483312.1_2125106-2125081|LS483312.1_2514485-2514510|LS483312.1_2448388-2448413	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA|126aa|down_5|LS483312.1_686144_686522_-,NA|71aa|down_6|LS483312.1_686539_686752_-	NA|205aa|up_9|LS483312.1_670185_670800_-	cd05540, UreG, urease accessory protein UreG	NA|230aa|up_8|LS483312.1_670813_671503_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|151aa|up_7|LS483312.1_671495_671948_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|572aa|up_6|LS483312.1_671960_673676_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|136aa|up_5|LS483312.1_673675_674083_-	PRK13201, ureB, urease subunit beta; Reviewed	NA|101aa|up_4|LS483312.1_674095_674398_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|299aa|up_3|LS483312.1_674606_675503_+	TIGR03441, urea_trans_yut, urea transporter, Yersinia type	NA|196aa|up_2|LS483312.1_675717_676305_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|592aa|up_1|LS483312.1_676508_678284_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|579aa|up_0|LS483312.1_679003_680740_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|302aa|down_0|LS483312.1_681240_682146_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|98aa|down_1|LS483312.1_682376_682670_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|106aa|down_2|LS483312.1_682702_683020_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|211aa|down_3|LS483312.1_683370_684003_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|538aa|down_4|LS483312.1_684330_685944_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|126aa|down_5|LS483312.1_686144_686522_-	NA	NA|71aa|down_6|LS483312.1_686539_686752_-	NA	NA|211aa|down_7|LS483312.1_687731_688364_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|382aa|down_8|LS483312.1_688571_689717_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|284aa|down_9|LS483312.1_689859_690711_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	5	1017204-1017290	5	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	AACAACGCAAGTTGGGGTGGGGCCCCAACA	30	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA|60aa|down_4|LS483312.1_1022769_1022949_+,NA|243aa|down_9|LS483312.1_1025991_1026720_+	NA|317aa|up_9|LS483312.1_1006763_1007714_+	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|495aa|up_8|LS483312.1_1007813_1009298_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|325aa|up_7|LS483312.1_1009298_1010273_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|239aa|up_6|LS483312.1_1010364_1011081_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|430aa|up_5|LS483312.1_1011093_1012383_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|48aa|up_4|LS483312.1_1012403_1012547_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|189aa|up_3|LS483312.1_1012549_1013116_-	smart00793, AgrB, Accessory gene regulator B	NA|262aa|up_2|LS483312.1_1013743_1014529_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|208aa|up_1|LS483312.1_1014663_1015287_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|519aa|up_0|LS483312.1_1015480_1017037_+	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)	NA|247aa|down_0|LS483312.1_1017579_1018320_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|LS483312.1_1018500_1018785_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|LS483312.1_1018844_1020467_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|429aa|down_3|LS483312.1_1021009_1022296_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|60aa|down_4|LS483312.1_1022769_1022949_+	NA	NA|127aa|down_5|LS483312.1_1023174_1023555_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|296aa|down_6|LS483312.1_1023551_1024439_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|222aa|down_7|LS483312.1_1024435_1025101_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|291aa|down_8|LS483312.1_1025119_1025992_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|243aa|down_9|LS483312.1_1025991_1026720_+	NA
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	6	1244150-1244240	6	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	AAACTCGCCATGCTCGTTAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|410aa|up_9|LS483312.1_1230618_1231848_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|up_8|LS483312.1_1231936_1232794_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|up_7|LS483312.1_1232795_1233740_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|up_6|LS483312.1_1233902_1234871_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|587aa|up_5|LS483312.1_1234888_1236649_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|453aa|up_4|LS483312.1_1237199_1238558_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|373aa|up_3|LS483312.1_1238904_1240023_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|up_2|LS483312.1_1240070_1241339_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|237aa|up_1|LS483312.1_1241542_1242253_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|570aa|up_0|LS483312.1_1242252_1243962_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|878aa|down_0|LS483312.1_1244287_1246921_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|291aa|down_1|LS483312.1_1246937_1247810_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|202aa|down_2|LS483312.1_1247825_1248431_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|334aa|down_3|LS483312.1_1248577_1249579_+	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|336aa|down_4|LS483312.1_1249751_1250759_+	PRK06256, PRK06256, biotin synthase; Validated	NA|157aa|down_5|LS483312.1_1251075_1251546_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|459aa|down_6|LS483312.1_1251546_1252923_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|307aa|down_7|LS483312.1_1252922_1253843_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|646aa|down_8|LS483312.1_1254202_1256140_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|498aa|down_9|LS483312.1_1256603_1258097_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	8	1673458-1673545	8	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	AAGAAATTCGACAAACAAAGCAGGTTGGGGT	31	1	1	1673489-1673514	LS483312.1_458017-458042	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|241aa|up_9|LS483312.1_1661842_1662565_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|293aa|up_8|LS483312.1_1662701_1663580_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|263aa|up_7|LS483312.1_1663763_1664552_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|258aa|up_6|LS483312.1_1664770_1665544_-	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|468aa|up_5|LS483312.1_1665565_1666969_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|181aa|up_4|LS483312.1_1667015_1667558_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|298aa|up_3|LS483312.1_1667558_1668452_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|436aa|up_2|LS483312.1_1668583_1669891_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|690aa|up_1|LS483312.1_1669942_1672012_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|305aa|up_0|LS483312.1_1672183_1673098_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|412aa|down_0|LS483312.1_1673714_1674950_-	pfam02388, FemAB, FemAB family	NA|303aa|down_1|LS483312.1_1675104_1676013_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|down_2|LS483312.1_1676034_1677201_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|down_3|LS483312.1_1677311_1678079_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|down_4|LS483312.1_1678062_1678947_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|864aa|down_5|LS483312.1_1679203_1681795_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|869aa|down_6|LS483312.1_1681799_1684406_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_7|LS483312.1_1684652_1685003_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_8|LS483312.1_1685108_1685846_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|167aa|down_9|LS483312.1_1685845_1686346_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional
GCA_900474705.1_41236_B02	LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	9	1788317-1788401	9	CRISPRCasFinder	no		cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	Orphan	CAAAGCAAGTTGGGGTGGGGCCCCGACA	28	1	7	1788345-1788373|1788345-1788373|1788345-1788373|1788345-1788373|1788345-1788373|1788345-1788373|1788345-1788373	LS483312.1_1176766-1176794|LS483312.1_2148207-2148235|LS483312.1_1416137-1416165|LS483312.1_2125104-2125132|LS483312.1_227745-227717|LS483312.1_1039237-1039209|LS483312.1_1190395-1190367	NA	1	1	Orphan	cas9,cas1,cas2,csa3,WYL,DEDDh,cas3,DinG	NA|130aa|up_7|LS483312.1_1781765_1782155_+,NA|162aa|down_3|LS483312.1_1794670_1795156_+	NA|161aa|up_9|LS483312.1_1780670_1781153_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|184aa|up_8|LS483312.1_1781145_1781697_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|130aa|up_7|LS483312.1_1781765_1782155_+	NA	NA|84aa|up_6|LS483312.1_1782171_1782423_-	COG4471, COG4471, Uncharacterized protein conserved in bacteria [Function unknown]	NA|309aa|up_5|LS483312.1_1782581_1783508_+	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	NA|145aa|up_4|LS483312.1_1783595_1784030_-	COG3679, COG3679, Regulatory protein involved in competence development and sporulation [Replication, recombination and repair;    Signal transduction mechanisms]	NA|347aa|up_3|LS483312.1_1784046_1785087_-	pfam14504, CAP_assoc_N, CAP-associated N-terminal	NA|154aa|up_2|LS483312.1_1785288_1785750_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|304aa|up_1|LS483312.1_1785775_1786687_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|310aa|up_0|LS483312.1_1786904_1787834_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|1149aa|down_0|LS483312.1_1788598_1792045_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|413aa|down_1|LS483312.1_1792709_1793948_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|93aa|down_2|LS483312.1_1794248_1794527_-	PRK13666, PRK13666, hypothetical protein; Provisional	NA|162aa|down_3|LS483312.1_1794670_1795156_+	NA	NA|85aa|down_4|LS483312.1_1795157_1795412_+	pfam09963, DUF2197, Uncharacterized protein conserved in bacteria (DUF2197)	NA|616aa|down_5|LS483312.1_1795457_1797305_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|66aa|down_6|LS483312.1_1797403_1797601_+	pfam17259, DUF5325, Family of unknown function (DUF5325)	NA|272aa|down_7|LS483312.1_1797774_1798590_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|204aa|down_8|LS483312.1_1798772_1799384_+	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|451aa|down_9|LS483312.1_1799645_1800998_+	PRK00701, PRK00701, divalent metal cation transporter MntH
