The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	571308	594426	2547699	protease,holin,tRNA	Bacillus_phage(40.0%)	22	NA	NA
SQE70918.1|571308_572832_+|tRNA	putative nucleic acid binding OB-fold tRNA /helicase-type	tRNA	NA	NA	NA	NA
SQE70919.1|572848_574387_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA	NA
SQE70920.1|574638_576216_-	ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
SQE70921.1|576509_577274_+	abortive infection family protein	NA	NA	NA	NA	NA
SQE70922.1|577296_578076_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
SQE70923.1|578202_578865_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.7	1.5e-18
SQE70924.1|578857_579634_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQE70925.1|580125_581589_-	sensor kinase	NA	W8CYF6	Bacillus_phage	21.8	4.8e-09
SQE70926.1|581581_582259_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQE70927.1|582416_582644_+	membrane protein	NA	NA	NA	NA	NA
SQE70928.1|582770_583946_+	Chloramphenicol resistance protein	NA	NA	NA	NA	NA
SQE70929.1|584102_585452_-	carboxylesterase type B	NA	NA	NA	NA	NA
SQE70930.1|585572_586169_+	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQE70931.1|586332_587385_-	zinc dependent dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.2	1.2e-09
SQE70932.1|587771_589022_+|holin	Osmotically activated L-carnitine/choline ABC transporter ATP-binding protein OpuCA	holin	Q6GZ03	Mycoplasma_phage	51.6	1.4e-20
SQE70933.1|589021_589657_+|holin	Osmotically activated L-carnitine/choline ABC transporter permease OpuCB	holin	NA	NA	NA	NA
SQE70934.1|589679_590621_+|holin	Osmotically activated L-carnitine/choline ABC transporter substrate-binding protein OpuCC	holin	NA	NA	NA	NA
SQE70935.1|590620_591301_+|holin	Osmotically activated L-carnitine/choline ABC transporter permease OpuCD	holin	NA	NA	NA	NA
SQE70936.1|591735_592347_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQE70937.1|592366_592678_+	EsaC protein analog	NA	A0A1X9I6T6	Streptococcus_phage	43.0	2.7e-15
SQE70938.1|592795_593452_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQE70939.1|593724_594426_-|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
>prophage 2
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	1138604	1168858	2547699	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
SQE71462.1|1138604_1139999_+	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
SQE71463.1|1140005_1141010_+	O-succinylbenzoate-CoA synthase	NA	A0A2H4PQM0	Staphylococcus_phage	47.7	1.1e-84
SQE71464.1|1141006_1141264_-	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
SQE71465.1|1141330_1141804_+	low G+C gram positive nudix hydrolase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
SQE71466.1|1141784_1142558_+	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	1.7e-98
SQE71467.1|1142621_1144214_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	1.1e-274
SQE71468.1|1144585_1145782_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	87.2	5.0e-198
SQE71469.1|1145880_1146789_+	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
SQE71470.1|1146903_1147737_+	oxidoreductase of aldo/keto reductase family, subgroup 1	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	5.5e-119
SQE71471.1|1147921_1148275_-	CrcB-like protein	NA	NA	NA	NA	NA
SQE71472.1|1148271_1148637_-	protein crcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	1.5e-33
SQE71473.1|1148705_1149011_-	membrane protein	NA	NA	NA	NA	NA
SQE71474.1|1149267_1149981_+	Transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
SQE71475.1|1150111_1150564_+	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
SQE71476.1|1150544_1150991_-	comK family protein	NA	NA	NA	NA	NA
SQE71477.1|1151006_1151477_-	putative DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	5.6e-28
SQE71478.1|1151674_1151899_+	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE71479.1|1152100_1152955_+	Autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
SQE71480.1|1153338_1154838_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	73.7	1.4e-16
SQE71481.1|1155149_1156256_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.4e-124
SQE71482.1|1156263_1156896_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
SQE71483.1|1156908_1158090_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.1	2.5e-173
SQE71484.1|1158102_1158561_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
SQE71485.1|1158638_1159625_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	5.5e-134
SQE71486.1|1159841_1160675_+	Lysophospholipase/Monoglyceride lipase	NA	NA	NA	NA	NA
SQE71487.1|1161169_1161571_+	Repressor of toxins Rot	NA	NA	NA	NA	NA
SQE71488.1|1161621_1162185_-	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
SQE71489.1|1162181_1163135_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
SQE71490.1|1163238_1164414_+	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	78.5	5.8e-175
SQE71491.1|1164735_1167150_+|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.0	0.0e+00
SQE71492.1|1167168_1167480_+	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
SQE71493.1|1167598_1168858_-	NAD(FAD)-utilizing dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	3.7e-42
>prophage 3
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	1420100	1428797	2547699		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
SQE71733.1|1420100_1420832_+	Segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
SQE71734.1|1420824_1421358_+	Segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
SQE71735.1|1421360_1422098_+	ribosomal large subunit pseudouridine synthaseB	NA	NA	NA	NA	NA
SQE71736.1|1422248_1422974_+	transcriptional regulator srrA	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
SQE71737.1|1422957_1424706_+	Staphylococcal respiratory response protein SrrB	NA	A0A1V0SGX0	Hokovirus	31.2	1.6e-19
SQE71738.1|1425428_1425971_+	substrate-specific component RibU of riboflavin ECF transporter	NA	NA	NA	NA	NA
SQE71739.1|1426112_1426361_-	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
SQE71740.1|1426471_1427431_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE71741.1|1427417_1428797_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 4
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	1832411	1840881	2547699		Synechococcus_phage(33.33%)	9	NA	NA
SQE72107.1|1832411_1832978_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	2.6e-27
SQE72108.1|1832977_1834009_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	5.1e-66
SQE72109.1|1834001_1835486_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
SQE72110.1|1835464_1837654_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
SQE72111.1|1837646_1838318_-	phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA	NA
SQE72112.1|1838319_1838580_-	phosphoribosylformylglycinamidine synthase, PurS protein	NA	NA	NA	NA	NA
SQE72113.1|1838579_1839284_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
SQE72114.1|1839284_1840412_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQE72115.1|1840398_1840881_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
>prophage 5
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	2039655	2052661	2547699	transposase,terminase,integrase	Staphylococcus_phage(86.67%)	21	2035197:2035212	2050110:2050125
2035197:2035212	attL	GCTATTATTTGGCTGG	NA	NA	NA	NA
SQE72301.1|2039655_2040228_-|terminase	terminase, superantigen-encoding pathogenicity islands SaPI	terminase	Q4ZE85	Staphylococcus_phage	75.9	7.4e-75
SQE72302.1|2040290_2040812_-	pathogenicity island protein	NA	NA	NA	NA	NA
SQE72303.1|2040823_2041057_-	pathogenicity island protein	NA	NA	NA	NA	NA
SQE72304.1|2041070_2041415_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	86.8	2.7e-48
SQE72305.1|2041703_2042345_-|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	89.7	2.0e-108
SQE72306.1|2042341_2042626_-	pathogenicity island protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	4.2e-47
SQE72307.1|2042627_2042990_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	86.7	2.3e-58
SQE72308.1|2043282_2044749_-	pathogenicity island protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.5	2.1e-275
SQE72309.1|2044761_2045631_-	pathogenicity island protein	NA	A0A1W6JQL5	Staphylococcus_phage	85.8	3.0e-144
SQE72310.1|2045717_2046017_-	mobile element-associated DUF1474-containing protein, putative	NA	A0A1W6JQH0	Staphylococcus_phage	55.7	4.4e-18
SQE72311.1|2046017_2046401_-	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
SQE72312.1|2046402_2046606_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
SQE72313.1|2046572_2046746_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
SQE72314.1|2046757_2047030_-	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	88.9	1.1e-39
SQE72315.1|2047030_2047252_-	putative transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	1.5e-07
SQE72316.1|2047423_2047996_+	Lambda repressor-like protein	NA	NA	NA	NA	NA
SQE72317.1|2048022_2048715_+	exported protein	NA	A0A1J0MG42	Staphylococcus_phage	38.6	5.7e-29
SQE72318.1|2048751_2049972_+|integrase	prophage L54a integrase	integrase	Q4ZE80	Staphylococcus_phage	46.3	2.3e-97
SQE72319.1|2050113_2050926_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
2050110:2050125	attR	GCTATTATTTGGCTGG	NA	NA	NA	NA
SQE72320.1|2050947_2051643_-	methionine ABC transporter permease	NA	NA	NA	NA	NA
SQE72321.1|2051635_2052661_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	3.6e-27
>prophage 6
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	2132437	2150231	2547699		uncultured_Caudovirales_phage(58.33%)	17	NA	NA
SQE72402.1|2132437_2133391_-	FecCD family protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.5	2.5e-06
SQE72403.1|2133377_2134361_-	FecCD family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
SQE72404.1|2134915_2135950_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE72405.1|2136064_2136829_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.2	1.2e-14
SQE72406.1|2136843_2137803_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
SQE72407.1|2137783_2138761_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
SQE72408.1|2139129_2140098_-	ribonucleotide reductase of class Ib (aerobic), beta subunit	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
SQE72409.1|2140337_2142443_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQE72410.1|2142405_2142804_-	ribonucleotide reduction protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	75.8	6.1e-52
SQE72411.1|2143677_2144547_+	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE72412.1|2144559_2145060_+	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
SQE72413.1|2145317_2146430_+	putative proton-dependent oligopeptide transport protein	NA	A0A0P0IY73	Acinetobacter_phage	33.6	1.3e-46
SQE72414.1|2146436_2146850_+	putative proton-dependent oligopeptide transport protein	NA	NA	NA	NA	NA
SQE72415.1|2147176_2148091_+	Diacylglycerol kinase catalytic domain-containing transcription regulator	NA	NA	NA	NA	NA
SQE72416.1|2148136_2148334_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE72417.1|2148407_2148938_-	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	38.4	4.4e-29
SQE72418.1|2149175_2150231_-	aromatic amino acid aminotransferase subunit beta	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 7
LS483312	Staphylococcus lugdunensis strain NCTC7990 genome assembly, chromosome: 1	2547699	2164755	2171376	2547699		Pandoravirus(16.67%)	8	NA	NA
SQE72429.1|2164755_2165907_-	para-aminobenzoate synthase	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
SQE72430.1|2165890_2166487_-	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
SQE72431.1|2166822_2167494_+	queuosine biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
SQE72432.1|2167495_2167915_+	queuosine biosynthesis QueD, PTPS-I	NA	NA	NA	NA	NA
SQE72433.1|2167914_2168631_+	queuosine biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
SQE72434.1|2168729_2169320_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE72435.1|2169360_2170383_-	CsbB stress response protein	NA	A0A192Y8W7	Salmonella_phage	41.9	3.2e-60
SQE72436.1|2170539_2171376_-	oxidoreductase of aldo/keto reductase family, subgroup 1	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	9.6e-63
