The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	631997	697409	2762956	holin,protease	Bacillus_phage(33.33%)	58	NA	NA
SQE73312.1|631997_632384_+|holin	holin-like protein	holin	NA	NA	NA	NA
SQE73313.1|632380_633067_+|holin	holin-like protein	holin	NA	NA	NA	NA
SQE73314.1|633174_634917_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.6	3.5e-35
SQE73315.1|635073_635634_+	acetyltransferase	NA	NA	NA	NA	NA
SQE73316.1|635706_636105_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
SQE73317.1|636176_636881_+	AzlC	NA	NA	NA	NA	NA
SQE73318.1|636882_637209_+	putative branched-chain amino acid transport protein	NA	NA	NA	NA	NA
SQE73319.1|637285_638326_-	putative nickel transport protein	NA	NA	NA	NA	NA
SQE73320.1|638525_639293_+	putative lysophospholipase	NA	NA	NA	NA	NA
SQE73321.1|639344_640379_+	putative catabolite control protein A	NA	NA	NA	NA	NA
SQE73322.1|640485_641064_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE73323.1|641810_642854_+	transcriptional regulator pfoR	NA	NA	NA	NA	NA
SQE73324.1|642897_643575_+	putative L-serine dehydratase beta chain	NA	NA	NA	NA	NA
SQE73325.1|643588_644479_+	putative L-serine dehydratase	NA	NA	NA	NA	NA
SQE73326.1|644655_644832_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE73327.1|644907_645441_+	putative NADPH oxidoreductase	NA	NA	NA	NA	NA
SQE73328.1|645521_646193_+	putative NAD(P)H-flavin oxidoreductase	NA	NA	NA	NA	NA
SQE73329.1|646342_647338_+	D-specific D-2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	31.2	2.7e-40
SQE73330.1|647385_649173_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	31.2	4.7e-51
SQE73331.1|649165_650947_+	putative ABC transporter ATP-binding/permease	NA	W8CYL7	Bacillus_phage	28.9	1.6e-51
SQE73332.1|651020_651302_-	acetyltransferase	NA	NA	NA	NA	NA
SQE73333.1|651645_652713_+	zinc ABC transporter periplasmic-binding protein ZnuA	NA	NA	NA	NA	NA
SQE73334.1|652870_653401_+	putative glyoxylase family protein	NA	NA	NA	NA	NA
SQE73335.1|653433_653763_+	putative glyoxylase family protein	NA	NA	NA	NA	NA
SQE73336.1|654041_655445_+	melibiose:sodium symporter	NA	NA	NA	NA	NA
SQE73337.1|655538_656390_-	lactose operon transcription regulator	NA	NA	NA	NA	NA
SQE73338.1|656486_659435_+	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	30.8	3.0e-127
SQE73339.1|659540_661493_-	putative fructose-bisphosphatase	NA	NA	NA	NA	NA
SQE73340.1|661691_662549_+	putative ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	4.2e-13
SQE73341.1|662545_663208_+	membrane protein	NA	NA	NA	NA	NA
SQE73342.1|663282_663897_-	putative alkaline phosphatase	NA	NA	NA	NA	NA
SQE73343.1|664247_665522_+	putative glucarate transporter	NA	NA	NA	NA	NA
SQE73344.1|665683_665986_+	monooxygenase family protein	NA	NA	NA	NA	NA
SQE73345.1|666089_666788_+	putative alpha-acetolactate decarboxylase	NA	NA	NA	NA	NA
SQE73346.1|666919_668845_+	Integral membrane protein	NA	NA	NA	NA	NA
SQE73347.1|668888_669293_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE73348.1|669484_670684_-	putative GTPases (G3E family) protein	NA	NA	NA	NA	NA
SQE73349.1|670945_671656_+	GTP-pyrophosphokinase	NA	NA	NA	NA	NA
SQE73350.1|672256_674356_+	putative ATP-dependent Clp proteinase chain clpL	NA	H6X3M6	Enterobacteria_phage	37.2	1.0e-113
SQE73351.1|674518_675205_+	putative gluconate operon transcriptional repressor	NA	NA	NA	NA	NA
SQE73352.1|675217_676753_+	putative gluconokinase	NA	NA	NA	NA	NA
SQE73353.1|676889_678251_+	putative gluconate permease	NA	NA	NA	NA	NA
SQE73354.1|678321_679101_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE73355.1|679145_680399_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
SQE73356.1|680495_682664_-	polyphosphate kinase	NA	NA	NA	NA	NA
SQE73357.1|682870_684469_-	putative exopolyphosphatase	NA	NA	NA	NA	NA
SQE73358.1|684745_685207_+	lipoprotein	NA	NA	NA	NA	NA
SQE73359.1|685417_686026_+	membrane protein	NA	NA	NA	NA	NA
SQE73360.1|686218_687007_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
SQE73361.1|687194_687938_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
SQE73362.1|688106_688775_+	putative ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	34.2	8.8e-19
SQE73363.1|688771_689551_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQE73364.1|689722_690886_+	putative transport protein	NA	NA	NA	NA	NA
SQE73365.1|690924_692307_-	putative para-nitrobenzyl esterase chain A	NA	NA	NA	NA	NA
SQE73366.1|692386_694024_-	putative amino acid transporter	NA	NA	NA	NA	NA
SQE73367.1|694501_695098_+	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQE73368.1|695565_696780_+|holin	putative glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCA	holin	Q6GZ03	Mycoplasma_phage	50.5	3.8e-20
SQE73369.1|696779_697409_+|holin	putative glycine betaine/carnitine/choline transport system permease	holin	NA	NA	NA	NA
>prophage 2
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	1226468	1260837	2762956	tRNA	Staphylococcus_phage(92.59%)	35	NA	NA
SQE73894.1|1226468_1228511_-	cation exporting ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	4.1e-67
SQE73895.1|1228770_1229283_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE73896.1|1229462_1230155_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE73897.1|1230270_1231659_+	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	57.1	5.0e-157
SQE73898.1|1231661_1232672_+	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.4	6.7e-95
SQE73899.1|1232662_1232920_-	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
SQE73900.1|1232997_1233489_+	MutT/NUDIX hydrolase family protein	NA	A0A2H4PQM4	Staphylococcus_phage	50.3	1.0e-35
SQE73901.1|1233454_1234228_+	peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.3e-93
SQE73902.1|1234280_1235873_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.0e-259
SQE73903.1|1236260_1237457_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	81.4	8.8e-187
SQE73904.1|1237553_1238453_+	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
SQE73905.1|1238574_1239411_+	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	65.7	1.2e-102
SQE73906.1|1239462_1239816_-	CrcB-like protein	NA	NA	NA	NA	NA
SQE73907.1|1239808_1240180_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.5	8.0e-38
SQE73908.1|1240240_1240549_-	membrane protein	NA	NA	NA	NA	NA
SQE73909.1|1240736_1241453_+	putative translaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
SQE73910.1|1241594_1242056_+	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	41.6	1.8e-18
SQE73911.1|1242030_1242471_-	comK family protein	NA	NA	NA	NA	NA
SQE73912.1|1242470_1242968_-	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	2.4e-21
SQE73913.1|1243172_1243394_+	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE73914.1|1243795_1244641_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
SQE73915.1|1244782_1246264_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
SQE73916.1|1246657_1247707_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	59.4	1.0e-117
SQE73917.1|1247711_1248344_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	2.8e-67
SQE73918.1|1248359_1249541_+	riboflavin biosynthesis protein	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.4e-168
SQE73919.1|1249573_1250035_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.2	3.9e-58
SQE73920.1|1250108_1251104_-	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	5.8e-115
SQE73921.1|1251365_1252196_+	putative lysophospholipase	NA	NA	NA	NA	NA
SQE73922.1|1252372_1253329_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SQE73923.1|1253394_1253952_-	putative rRNA methylase	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	3.0e-60
SQE73924.1|1253948_1254911_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	84.4	2.5e-67
SQE73925.1|1255183_1256362_+	major facilitator superfamily permease	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	3.0e-163
SQE73926.1|1256741_1259156_+|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	84.8	0.0e+00
SQE73927.1|1259176_1259494_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
SQE73928.1|1259580_1260837_-	flavoprotein	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 3
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	1381839	1391942	2762956	tRNA	Klosneuvirus(33.33%)	7	NA	NA
SQE74036.1|1381839_1384143_+	putative single-strand DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	30.9	2.7e-75
SQE74037.1|1384161_1384680_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	6.2e-28
SQE74038.1|1385030_1387220_+	GTP pyrophosphokinase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
SQE74039.1|1387235_1387688_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
SQE74040.1|1387684_1388560_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
SQE74041.1|1388885_1390160_+|tRNA	histidyl-tRNA synthetase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	3.9e-15
SQE74042.1|1390175_1391942_+|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 4
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	1967904	1976326	2762956		Prochlorococcus_phage(33.33%)	9	NA	NA
SQE74595.1|1967904_1968471_-	putative phosphoribosylglycinamide formyltransferase PurN	NA	M4QRX9	Synechococcus_phage	40.3	2.6e-32
SQE74596.1|1968467_1969508_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	44.1	9.1e-71
SQE74597.1|1969512_1970934_-	putative amidophosphoribosyltransferase PurF	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
SQE74598.1|1970912_1973102_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
SQE74599.1|1973094_1973766_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
SQE74600.1|1973765_1974026_-	putative phosphoribosylformylglycinamidine synthase, PurS component	NA	NA	NA	NA	NA
SQE74601.1|1974025_1974730_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.5	4.3e-48
SQE74602.1|1974729_1975857_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQE74603.1|1975843_1976326_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.3	1.2e-22
>prophage 5
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	1990416	2037344	2762956	head,protease,portal,terminase,capsid,tail	uncultured_Caudovirales_phage(38.33%)	70	NA	NA
SQE74620.1|1990416_1991706_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	71.3	2.2e-167
SQE74621.1|1991721_1992123_+	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	62.8	1.5e-42
SQE74622.1|1992199_1992886_-	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
SQE74623.1|1993458_1994016_-	Uncharacterised protein	NA	W5R8Q1	Staphylococcus_phage	42.5	9.2e-38
SQE74624.1|1994651_1996124_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q4ZD58	Staphylococcus_phage	76.5	3.5e-217
SQE74625.1|1996125_1996374_-	Uncharacterised protein	NA	Q4ZD59	Staphylococcus_phage	86.6	8.5e-36
SQE74626.1|1996421_1996820_-	hypothetical phage membrane protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	88.6	2.3e-59
SQE74627.1|1996806_1997229_-	hypothetical phage membrane protein	NA	A0A2H4JID2	uncultured_Caudovirales_phage	80.7	8.2e-63
SQE74628.1|1997266_1997419_-	phage protein	NA	A0A1W6JQ64	Staphylococcus_phage	88.0	1.1e-20
SQE74629.1|1997420_1997822_-	Uncharacterized conserved protein	NA	A0A1W6JQ86	Staphylococcus_phage	83.1	6.2e-36
SQE74630.1|1997835_1999341_-	phage protein	NA	A0A1W6JQ87	Staphylococcus_phage	73.1	2.2e-150
SQE74631.1|1999352_2001968_-	Putative major teichoic acid biosynthesis protein C	NA	A0A2H4JF10	uncultured_Caudovirales_phage	76.3	0.0e+00
SQE74632.1|2001982_2002549_-	Uncharacterised protein	NA	A0A1W6JQ70	Staphylococcus_phage	74.8	3.0e-84
SQE74633.1|2002541_2004131_-|tail	prophage endopeptidase tail family protein	tail	A0A2H4JAF8	uncultured_Caudovirales_phage	90.9	4.5e-287
SQE74634.1|2004140_2004968_-|tail	phage tail family protein	tail	A0A2H4JAE4	uncultured_Caudovirales_phage	91.3	5.1e-149
SQE74635.1|2004969_2009412_-|tail	bacteriophage tail tape measure protein, TP901 family	tail	A0A2H4JDT7	uncultured_Caudovirales_phage	60.5	5.6e-295
SQE74636.1|2009624_2009987_-	phage protein	NA	A0A2H4J3M2	uncultured_Caudovirales_phage	96.7	3.1e-58
SQE74637.1|2010054_2010240_-	Rho termination factor domain-containing protein	NA	A0A0N9STM6	Staphylococcus_phage	91.8	1.7e-25
SQE74638.1|2010258_2010894_-|tail	phage major tail, phi13 family protein	tail	A0A2H4JH93	uncultured_Caudovirales_phage	90.0	1.4e-101
SQE74639.1|2010906_2011311_-	putative bacteriophage protein	NA	A0A2H4J9Z2	uncultured_Caudovirales_phage	88.8	4.9e-65
SQE74640.1|2011315_2011723_-	bacteriophage protein	NA	A0A1D6Z2A1	Staphylococcus_phage	43.7	8.6e-25
SQE74641.1|2011719_2012049_-	phage protein	NA	A0A2H4J9E0	uncultured_Caudovirales_phage	87.2	1.7e-52
SQE74642.1|2012038_2012380_-	uncharacterized phage protein (possible DNA packaging)	NA	A0A2H4JDD1	uncultured_Caudovirales_phage	85.8	7.6e-51
SQE74643.1|2012398_2013733_-|capsid	phage major capsid protein, HK97 family	capsid	A0A2H4J411	uncultured_Caudovirales_phage	91.2	5.3e-172
SQE74644.1|2013774_2014332_-|head,protease	prohead protease	head,protease	A0A2H4J792	uncultured_Caudovirales_phage	64.0	5.4e-62
SQE74645.1|2014321_2015554_-|portal	portal protein	portal	H9A113	Staphylococcus_phage	95.9	1.4e-227
SQE74646.1|2015553_2015748_-	Uncharacterised protein	NA	A0A2H4J9T6	uncultured_Caudovirales_phage	90.6	1.1e-22
SQE74647.1|2015759_2017454_-	phage Terminase family protein	NA	A0A2H4JC16	uncultured_Caudovirales_phage	91.5	9.6e-304
SQE74648.1|2017440_2017908_-|terminase	phage terminase small subunit	terminase	A0A2H4J4D1	uncultured_Caudovirales_phage	96.1	1.2e-78
SQE74649.1|2018985_2019432_-	phage transcriptional regulator	NA	A0A2H4JCR6	uncultured_Caudovirales_phage	73.8	3.8e-58
SQE74650.1|2019484_2019628_-	Uncharacterised protein	NA	Q4ZC78	Staphylococcus_virus	60.4	4.8e-07
SQE74651.1|2019627_2019804_-	transcriptional activator RinB family protein	NA	Q4ZC79	Staphylococcus_virus	91.4	9.4e-21
SQE74652.1|2019796_2019988_-	phage protein	NA	NA	NA	NA	NA
SQE74653.1|2020030_2020570_-	putative dUTP pyrophosphatase, phage associated	NA	I6SB33	Staphylococcus_virus	66.1	5.0e-57
SQE74654.1|2020569_2020806_-	Uncharacterised protein	NA	Q4ZC83	Staphylococcus_virus	75.6	2.5e-24
SQE74655.1|2020805_2021231_-	YopX protein	NA	Q4ZC86	Staphylococcus_virus	66.9	2.9e-39
SQE74656.1|2021247_2021712_-	YopX protein	NA	Q4ZC87	Staphylococcus_virus	100.0	2.6e-86
SQE74657.1|2021701_2021902_-	Uncharacterised protein	NA	Q4ZC88	Staphylococcus_virus	96.8	8.4e-26
SQE74658.1|2021901_2022078_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74659.1|2022078_2022501_-	Protein of unknwon function (DUF3310)	NA	A0A2R3ZXJ2	Staphylococcus_phage	53.8	1.7e-12
SQE74660.1|2022501_2023029_-	PVL ORF-50-like family	NA	Q4ZC91	Staphylococcus_virus	95.4	2.9e-89
SQE74661.1|2023031_2023217_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74662.1|2023217_2023625_-	putative holliday junction resolvase, phage associated	NA	Q4ZC94	Staphylococcus_virus	75.6	4.5e-58
SQE74663.1|2023608_2023791_-	Uncharacterised protein	NA	Q4ZC95	Staphylococcus_virus	98.3	3.1e-27
SQE74664.1|2023790_2024576_-	putative IstB-like ATP-binding protein, phage associated	NA	A0A1W6JPS4	Staphylococcus_phage	63.6	3.6e-96
SQE74665.1|2024576_2025305_-	Conserved phage C-terminus (Phg_2220_C)	NA	Q6R839	Staphylococcus_virus	56.5	3.2e-70
SQE74666.1|2025367_2026018_+	phage protein	NA	A0A2H4J7C1	uncultured_Caudovirales_phage	39.3	3.6e-33
SQE74667.1|2026129_2026792_-	phage protein	NA	Q4ZC99	Staphylococcus_virus	95.9	1.0e-123
SQE74668.1|2026804_2027251_-	ssDNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	92.8	3.1e-52
SQE74669.1|2027250_2027910_-	ERF family protein	NA	A0A1J0MF78	Staphylococcus_phage	90.4	2.4e-109
SQE74670.1|2027921_2028407_-	phage protein	NA	W5R8N0	Staphylococcus_phage	61.3	4.1e-50
SQE74671.1|2028409_2028676_-	Putative cytosolic protein	NA	A0A223LGN1	Staphylococcus_phage	40.0	4.6e-11
SQE74672.1|2028779_2028995_-	Uncharacterised protein	NA	Q4ZCA4	Staphylococcus_virus	88.6	9.1e-26
SQE74673.1|2028937_2029105_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74674.1|2029118_2029373_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74675.1|2029543_2029777_-	Uncharacterised protein	NA	A0A2H4J7P2	uncultured_Caudovirales_phage	79.2	6.0e-23
SQE74676.1|2029847_2030183_+	Phage protein	NA	NA	NA	NA	NA
SQE74677.1|2030183_2030402_-	phage protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	49.3	5.8e-12
SQE74678.1|2030483_2030714_+	phage protein	NA	Q4ZCA7	Staphylococcus_virus	100.0	2.5e-37
SQE74679.1|2030673_2030814_-	Uncharacterised protein	NA	Q4ZCA8	Staphylococcus_virus	100.0	1.5e-18
SQE74680.1|2030895_2031210_+	Uncharacterised protein	NA	A0A2H4JBC2	uncultured_Caudovirales_phage	88.5	8.6e-49
SQE74681.1|2031130_2031289_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74682.1|2031561_2032335_-	anti-repressor	NA	Q4ZCB0	Staphylococcus_virus	98.4	9.5e-142
SQE74683.1|2032385_2032856_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74684.1|2032818_2033052_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74685.1|2033065_2033818_-	antirepressor	NA	S4SW96	Staphylococcus_phage	93.6	3.3e-131
SQE74686.1|2033832_2034072_-	helix-turn-helix family protein	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	86.1	4.7e-31
SQE74687.1|2034261_2034936_+	phage repressor protein	NA	A0A1W6JPS3	Staphylococcus_phage	89.3	3.6e-113
SQE74688.1|2034951_2035635_+	surface lipoprotein-related protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	52.4	7.4e-05
SQE74689.1|2035967_2037344_+	phage DNA invertase	NA	H9A0K0	Staphylococcus_phage	47.4	5.2e-98
>prophage 6
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	2226867	2271344	2762956	head,protease,integrase,portal,terminase,capsid,transposase,tail	Staphylococcus_phage(61.82%)	65	2251022:2251037	2275387:2275402
SQE74847.1|2226867_2227425_-|transposase	IS1272 transposase	transposase	A0A1X9I5T2	Streptococcus_phage	45.7	4.7e-42
SQE74848.1|2227595_2228201_-|transposase	transposase	transposase	A0A1X9I5T2	Streptococcus_phage	53.1	3.9e-50
SQE74849.1|2228840_2230175_+|transposase	IS1272 transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-112
SQE74850.1|2230954_2232427_-	N-acetylmuramoyl-L-alanine amidase	NA	Q4ZD58	Staphylococcus_phage	75.2	2.3e-213
SQE74851.1|2232428_2232677_-	Uncharacterised protein	NA	Q4ZD59	Staphylococcus_phage	86.6	8.5e-36
SQE74852.1|2232724_2233120_-	hypothetical phage membrane protein	NA	A0A1D6Z274	Staphylococcus_phage	75.6	2.0e-47
SQE74853.1|2233103_2233520_-	hypothetical phage membrane protein	NA	A0A1D6Z278	Staphylococcus_phage	59.4	1.0e-41
SQE74854.1|2233557_2233842_-	Uncharacterised protein	NA	A0A1J0MFP4	Staphylococcus_phage	66.3	1.3e-24
SQE74855.1|2233885_2234053_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74856.1|2234039_2238689_-	phage minor structural, N-terminal region domain protein	NA	A0A2H4J300	uncultured_Caudovirales_phage	43.9	0.0e+00
SQE74857.1|2238704_2240198_-	bacteriophage protein	NA	A0A1J0MFV2	Staphylococcus_phage	69.3	1.9e-207
SQE74858.1|2240199_2245206_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1J0MFP9	Staphylococcus_phage	58.1	1.7e-268
SQE74859.1|2245405_2245852_-	Bacteriophage	NA	A0A1J0MFL9	Staphylococcus_phage	62.8	4.8e-45
SQE74860.1|2245920_2246634_-|tail	phage major tail, phi13 family protein	tail	A0A1J0MFV0	Staphylococcus_phage	81.3	3.4e-101
SQE74861.1|2246645_2247008_-	Bacteriophage	NA	A0A1J0MFP0	Staphylococcus_phage	70.0	7.3e-44
SQE74862.1|2247004_2247382_-	gp10 family phage protein	NA	A0A1J0MGE3	Staphylococcus_phage	60.8	1.4e-37
SQE74863.1|2247381_2247714_-|head,tail	phage head-tail adaptor	head,tail	A0A1J0MG09	Staphylococcus_phage	75.5	4.2e-46
SQE74864.1|2247694_2247985_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A1J0MFU4	Staphylococcus_phage	74.2	2.6e-36
SQE74865.1|2247994_2248150_-	Bacteriophage	NA	A0A1J0MFP2	Staphylococcus_phage	68.6	3.2e-09
SQE74866.1|2248163_2249402_-|capsid	phage major capsid protein, HK97 family	capsid	A0A1J0MFW8	Staphylococcus_phage	73.5	3.3e-160
SQE74867.1|2249495_2250071_-|head,protease	prohead protease	head,protease	A0A1J0MFL1	Staphylococcus_phage	78.0	2.7e-80
SQE74868.1|2250063_2251320_-|portal	portal protein	portal	A0A1J0MFU3	Staphylococcus_phage	83.0	3.1e-198
2251022:2251037	attL	AACACAACTAATTTAA	NA	NA	NA	NA
SQE74869.1|2251324_2251522_-	phi PVL orf 3-like protein-related protein	NA	A0A1J0MFN2	Staphylococcus_phage	48.4	2.1e-05
SQE74870.1|2251533_2253237_-	phage Terminase family protein	NA	A0A1J0MGD9	Staphylococcus_phage	84.5	5.5e-283
SQE74871.1|2253233_2253707_-|terminase	phage terminase small subunit	terminase	D2JLE3	Staphylococcus_phage	81.3	3.9e-69
SQE74872.1|2253799_2254174_-	phage endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	81.0	6.2e-54
SQE74873.1|2254170_2254554_-	hypothetical phage-related protein	NA	A0A1J0MFN7	Staphylococcus_phage	56.7	4.3e-34
SQE74874.1|2254732_2255131_-	Phage protein	NA	U3PBR8	Staphylococcus_phage	84.7	1.5e-58
SQE74875.1|2255211_2255397_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74876.1|2255527_2255704_-	transcriptional activator RinB family protein	NA	Q4ZC79	Staphylococcus_virus	91.4	8.5e-22
SQE74877.1|2255721_2255976_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74878.1|2255987_2256161_-	Uncharacterised protein	NA	A0A1W6JQ45	Staphylococcus_phage	71.9	8.6e-19
SQE74879.1|2256197_2256737_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A2H4J5Z8	uncultured_Caudovirales_phage	67.4	2.3e-57
SQE74880.1|2256729_2256963_-	Uncharacterised protein	NA	Q4ZC83	Staphylococcus_virus	93.5	1.1e-16
SQE74881.1|2256962_2257409_-	YopX protein	NA	Q4ZC87	Staphylococcus_virus	61.9	5.3e-44
SQE74882.1|2257398_2257593_-	Uncharacterised protein	NA	Q4ZC88	Staphylococcus_virus	85.9	3.2e-22
SQE74883.1|2257593_2258064_-	phage protein	NA	Q4ZC89	Staphylococcus_virus	95.5	2.7e-83
SQE74884.1|2258064_2258580_-	putative phage leukocidin protein	NA	Q4ZC91	Staphylococcus_virus	39.2	3.3e-21
SQE74885.1|2258592_2258784_-	Uncharacterised protein	NA	Q4ZC92	Staphylococcus_virus	95.2	7.3e-27
SQE74886.1|2258784_2259192_-	putative holliday junction resolvase, phage associated	NA	Q4ZC94	Staphylococcus_virus	92.6	3.1e-67
SQE74887.1|2259175_2259364_-	Uncharacterised protein	NA	Q4ZC95	Staphylococcus_virus	51.6	1.7e-07
SQE74888.1|2259357_2260131_-	DNA replication protein DnaC	NA	A0A1W6JP70	Staphylococcus_phage	81.4	5.8e-107
SQE74889.1|2260141_2260864_-	N-terminal phage replisome organizer	NA	A0A2H4JDN4	uncultured_Caudovirales_phage	86.2	1.6e-90
SQE74890.1|2260856_2261264_-	HNH endonuclease	NA	A0A2H4J7B0	uncultured_Caudovirales_phage	91.1	3.8e-65
SQE74891.1|2261256_2261934_-	phage protein	NA	Q4ZC99	Staphylococcus_virus	69.8	4.6e-92
SQE74892.1|2261948_2262470_-	Single stranded DNA-binding protein,phage-associated	NA	A9CR64	Staphylococcus_phage	77.5	7.8e-71
SQE74893.1|2262492_2263266_-	bacterial dnaA family protein	NA	A0A0H4ITW3	Staphylococcus_phage	83.7	3.9e-119
SQE74894.1|2263262_2263748_-	phage protein	NA	W5R8N0	Staphylococcus_phage	62.0	7.0e-50
SQE74895.1|2263750_2264017_-	Putative cytosolic protein	NA	A0A223LGN1	Staphylococcus_phage	40.0	1.3e-10
SQE74896.1|2264113_2264341_-	Uncharacterised protein	NA	Q4ZCA4	Staphylococcus_virus	71.2	1.6e-20
SQE74897.1|2264358_2264577_-	phage protein	NA	A0A1J0MG48	Staphylococcus_phage	67.7	4.9e-19
SQE74898.1|2264642_2264933_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74899.1|2264926_2265064_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74900.1|2265135_2265465_+	Phage protein	NA	M9NS98	Staphylococcus_phage	63.9	2.9e-31
SQE74901.1|2265453_2265669_-	phage protein	NA	A0A0H3U4C7	Staphylococcus_phage	75.7	1.5e-25
SQE74902.1|2265751_2266222_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74903.1|2266184_2266418_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74904.1|2266432_2267182_-	antirepressor	NA	A0A1X9H0A0	Staphylococcus_phage	87.1	1.2e-117
SQE74905.1|2267195_2267642_-	phage protein	NA	Q4ZCB1	Staphylococcus_virus	87.8	1.5e-70
SQE74906.1|2267654_2267894_-	putative plasmid copy control protein	NA	G4KNM9	Staphylococcus_phage	83.5	4.7e-31
SQE74907.1|2268063_2268765_+	phage transcriptional regulator	NA	Q9MBT4	Staphylococcus_prophage	52.7	4.4e-61
SQE74908.1|2268824_2269418_+	lipoprotein	NA	NA	NA	NA	NA
SQE74909.1|2269515_2269698_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74910.1|2269972_2270206_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74911.1|2270294_2271344_+|integrase	phage integrase	integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	88.5	3.4e-182
2275387:2275402	attR	TTAAATTAGTTGTGTT	NA	NA	NA	NA
>prophage 7
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	2288865	2324843	2762956	head,protease,integrase,portal,terminase,capsid,transposase,tail	Staphylococcus_phage(40.0%)	40	2297904:2297919	2332556:2332571
SQE74931.1|2288865_2290200_+|transposase	IS1272 transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-112
SQE74932.1|2290420_2291167_+	Uncharacterised protein	NA	A0A2H4J494	uncultured_Caudovirales_phage	79.4	7.6e-19
SQE74933.1|2291807_2292620_+	dehydrogenase	NA	NA	NA	NA	NA
SQE74934.1|2292701_2293316_-	putative flavoprotein oxygenase, DIM6/NTAB family protein	NA	NA	NA	NA	NA
SQE74935.1|2293753_2293915_+	surface lipoprotein-related protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	69.8	1.4e-10
SQE74936.1|2293889_2294444_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	38.1	1.4e-14
SQE74937.1|2295055_2295526_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	84.9	3.2e-68
SQE74938.1|2295589_2297953_-	putative ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.5	1.7e-93
2297904:2297919	attL	TCATAATCAGGTTGTT	NA	NA	NA	NA
SQE74939.1|2297996_2298737_-	carboxylesterase	NA	NA	NA	NA	NA
SQE74940.1|2298830_2299067_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
SQE74941.1|2299155_2299623_-	membrane spanning protein	NA	NA	NA	NA	NA
SQE74942.1|2299815_2301120_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	78.7	4.5e-192
SQE74943.1|2301213_2302731_-	phosphoglyceromutase	NA	NA	NA	NA	NA
SQE74944.1|2302732_2303494_-	triosephosphate isomerase	NA	NA	NA	NA	NA
SQE74945.1|2303533_2304724_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
SQE74946.1|2304990_2305998_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE74947.1|2306051_2307077_-	putative transcriptional regulator with sugar binding domain	NA	NA	NA	NA	NA
SQE74948.1|2307380_2307605_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74949.1|2307649_2308432_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74950.1|2309015_2309918_+	putative nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA	NA
SQE74951.1|2310268_2310853_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.8	4.8e-53
SQE74952.1|2311883_2312243_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74953.1|2312324_2312633_-|head,tail	Bacteriophage head-tail adaptor	head,tail	NA	NA	NA	NA
SQE74954.1|2312692_2314336_-|terminase	phage terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.3	6.5e-156
SQE74955.1|2314328_2314649_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74956.1|2314783_2315077_-	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	44.9	1.5e-18
SQE74957.1|2315069_2315351_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE74958.1|2315416_2316649_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	NA	NA	NA	NA
SQE74959.1|2316650_2317217_-|head	peptidase U35, phage prohead HK97	head	Q9AZY6	Lactococcus_phage	29.6	6.8e-12
SQE74960.1|2317203_2318406_-|portal	portal protein, phage associated	portal	A0A1L2BY94	Clostridium_phage	34.9	1.4e-59
SQE74961.1|2318528_2318870_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	69.6	1.4e-41
SQE74962.1|2319141_2320620_-	pathogenicity island protein	NA	A0A1W6JQD6	Staphylococcus_phage	74.7	7.0e-218
SQE74963.1|2320620_2321538_-	pathogenicity island protein	NA	A0A1W6JQL5	Staphylococcus_phage	43.8	1.5e-61
SQE74964.1|2321571_2321868_-	mobile element-associated protein	NA	Q4ZE75	Staphylococcus_phage	48.0	1.6e-20
SQE74965.1|2321868_2322279_-	pathogenicity island protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	88.8	3.7e-60
SQE74966.1|2322268_2322484_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	64.2	3.9e-21
SQE74967.1|2322500_2322746_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE74968.1|2322766_2322982_-	helix-turn-helix family protein	NA	A0A1B2APY7	Phage_Wrath	42.6	1.4e-05
SQE74969.1|2323040_2323763_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE74970.1|2323793_2324843_+|integrase	integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	41.2	5.8e-65
2332556:2332571	attR	TCATAATCAGGTTGTT	NA	NA	NA	NA
>prophage 8
LS483313	Staphylococcus simulans strain NCTC11046 genome assembly, chromosome: 1	2762956	2365643	2378124	2762956		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
SQE75006.1|2365643_2366615_-	FecCD transport family protein SstA	NA	A0A2H4IY97	uncultured_Caudovirales_phage	77.8	1.5e-131
SQE75007.1|2366917_2367892_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	2.1e-170
SQE75008.1|2368004_2370110_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.2	0.0e+00
SQE75009.1|2370072_2370474_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
SQE75010.1|2371358_2372246_+	putative permease	NA	NA	NA	NA	NA
SQE75011.1|2372248_2372752_+	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
SQE75012.1|2372934_2374458_+	putative di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
SQE75013.1|2374752_2376255_+	putative proton-dependent oligopeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
SQE75014.1|2376381_2376918_-	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE75015.1|2377059_2378124_-	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	24.9	6.3e-19
