The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	682297	690117	2718283		Hokovirus(16.67%)	10	NA	NA
SQE65879.1|682297_683353_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
SQE65880.1|683352_684039_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQE65881.1|684013_684487_-	DoxX family protein	NA	NA	NA	NA	NA
SQE65882.1|684828_685269_-	lipoprotein	NA	NA	NA	NA	NA
SQE65883.1|685548_686133_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE65884.1|686231_686945_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQE65885.1|686948_687368_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQE65886.1|687369_688038_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQE65887.1|688388_688982_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
SQE65888.1|688965_690117_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	702088	716818	2718283		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
SQE65897.1|702088_703147_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
SQE65898.1|703020_703302_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA	NA
SQE65899.1|703441_703984_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE65900.1|704663_705581_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
SQE65901.1|705849_707355_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQE65902.1|707695_708196_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQE65903.1|708215_709082_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE65904.1|709882_710281_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQE65905.1|710243_712349_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQE65906.1|712466_713438_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQE65907.1|714103_715117_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
SQE65908.1|715103_716060_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
SQE65909.1|716056_716818_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	962453	970926	2718283		Synechococcus_phage(33.33%)	9	NA	NA
SQE66136.1|962453_962936_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
SQE66137.1|962922_964047_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQE66138.1|964050_964755_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
SQE66139.1|964754_965018_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQE66140.1|965019_965691_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQE66141.1|965683_967873_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
SQE66142.1|967851_969336_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
SQE66143.1|969328_970357_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
SQE66144.1|970359_970926_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	1227268	1245217	2718283	head,terminase,portal,integrase	Staphylococcus_phage(54.17%)	34	1220992:1221009	1247208:1247225
1220992:1221009	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
SQE66375.1|1227268_1228396_-|integrase	integrase family protein	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
SQE66376.1|1228448_1229144_-	host cell surface-exposed lipofamily protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
SQE66377.1|1229155_1229539_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66378.1|1229685_1230078_-	helix-turn-helix family protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
SQE66379.1|1230245_1230464_+	regulatory protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
SQE66380.1|1230490_1230766_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66381.1|1230770_1230905_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66382.1|1230935_1231055_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66383.1|1231030_1231201_+	Uncharacterised protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
SQE66384.1|1231189_1231396_-	Uncharacterised protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
SQE66385.1|1231456_1232140_+	prophage, antirepressor, putative	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
SQE66386.1|1232238_1232400_+	phage protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
SQE66387.1|1232486_1232804_+	phage protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
SQE66388.1|1232793_1233060_+	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
SQE66389.1|1233064_1233601_+	glycosyl hydrolases 17 family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
SQE66390.1|1233601_1234381_+	bacterial dnaA family protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
SQE66391.1|1234407_1234956_+	Single stranded DNA-binding protein,phage-associated	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
SQE66392.1|1234968_1235871_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
SQE66393.1|1235871_1236162_+	PVL orf 51-like protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
SQE66394.1|1236176_1236341_+	phage protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
SQE66395.1|1236340_1236652_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66396.1|1236644_1237175_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
SQE66397.1|1237420_1237885_+	Uncharacterised protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
SQE66398.1|1237885_1238119_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66399.1|1238161_1238650_+	sigma-70, region 4 family protein	NA	R9TMH4	Paenibacillus_phage	27.7	4.3e-07
SQE66400.1|1238802_1239231_+	homeo-like domain protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
SQE66401.1|1239217_1240492_+|terminase	phage terminase, large subunit, PBSX family	terminase	Q4ZE37	Staphylococcus_virus	76.2	2.7e-194
SQE66402.1|1240504_1241953_+|portal	phage portal protein, SPP1 family	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
SQE66403.1|1241942_1243475_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	Q4ZE35	Staphylococcus_virus	61.6	1.9e-109
SQE66404.1|1243480_1243603_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66405.1|1243762_1243975_+	Phage protein	NA	NA	NA	NA	NA
SQE66406.1|1244094_1244364_+	Phage protein	NA	NA	NA	NA	NA
SQE66407.1|1244376_1244499_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66408.1|1244755_1245217_+	Uncharacterised protein	NA	A0A1J0MF61	Staphylococcus_phage	46.0	3.8e-29
1247208:1247225	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 5
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	1518452	1526782	2718283	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQE66642.1|1518452_1519220_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	7.8e-19
SQE66643.1|1519363_1520254_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
SQE66644.1|1520263_1521610_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
SQE66645.1|1521723_1522824_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
SQE66646.1|1522826_1523504_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQE66647.1|1523634_1524741_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQE66648.1|1524964_1526782_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 6
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	1594355	1603398	2718283	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQE66718.1|1594355_1594874_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
SQE66719.1|1594895_1597169_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	28.8	5.2e-63
SQE66720.1|1597371_1599651_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQE66721.1|1599925_1600186_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQE66722.1|1600204_1601344_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	2.1e-84
SQE66723.1|1601366_1602392_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE66724.1|1602393_1603398_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	1728661	1797095	2718283	tRNA,protease	Staphylococcus_phage(95.83%)	67	NA	NA
SQE66828.1|1728661_1735222_-	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	99.0	1.6e-309
SQE66829.1|1735547_1735859_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
SQE66830.1|1735880_1738298_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
SQE66831.1|1738585_1739767_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
SQE66832.1|1739876_1740830_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
SQE66833.1|1740826_1741390_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
SQE66834.1|1741509_1741911_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQE66835.1|1742482_1743310_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQE66836.1|1743543_1744545_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
SQE66837.1|1744666_1745131_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
SQE66838.1|1745143_1746325_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
SQE66839.1|1746335_1746968_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
SQE66840.1|1746974_1748018_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	1.6e-195
SQE66841.1|1748498_1750001_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
SQE66842.1|1750523_1750838_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
SQE66843.1|1750837_1752130_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
SQE66844.1|1752216_1753071_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQE66845.1|1753346_1753571_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE66846.1|1754351_1754795_+	comK family protein	NA	NA	NA	NA	NA
SQE66847.1|1754781_1755225_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
SQE66848.1|1755520_1756156_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQE66849.1|1756595_1757309_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQE66850.1|1757568_1757871_+	membrane protein	NA	NA	NA	NA	NA
SQE66851.1|1758126_1758492_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
SQE66852.1|1758488_1758842_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
SQE66853.1|1759224_1760058_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
SQE66854.1|1760269_1761178_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
SQE66855.1|1761302_1762496_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
SQE66856.1|1762867_1764460_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
SQE66857.1|1764837_1765608_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.1e-142
SQE66858.1|1765588_1766068_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
SQE66859.1|1766127_1766385_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
SQE66860.1|1766381_1767383_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
SQE66861.1|1767387_1768866_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	8.1e-283
SQE66862.1|1769024_1769507_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.6e-78
SQE66863.1|1769818_1770433_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
SQE66864.1|1770513_1771509_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
SQE66865.1|1771584_1772211_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
SQE66866.1|1772251_1772593_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
SQE66867.1|1772693_1773266_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
SQE66868.1|1773462_1774020_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
SQE66869.1|1774392_1774569_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66870.1|1774579_1774768_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66871.1|1775677_1775932_-	exported protein	NA	NA	NA	NA	NA
SQE66872.1|1776000_1776120_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE66873.1|1776119_1776563_-	exported protein	NA	NA	NA	NA	NA
SQE66874.1|1776562_1777006_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE66875.1|1777430_1779968_+	hyaluronate lyase	NA	NA	NA	NA	NA
SQE66876.1|1780091_1780469_-	exported protein	NA	NA	NA	NA	NA
SQE66877.1|1780674_1781115_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE66878.1|1781159_1782773_+	pathogenicity island protein	NA	NA	NA	NA	NA
SQE66879.1|1782787_1783087_+	ESAT-6 family protein	NA	NA	NA	NA	NA
SQE66880.1|1783213_1784458_-	restriction-modification system, S subunit	NA	A0A2H4PQP5	Staphylococcus_phage	62.1	1.2e-125
SQE66881.1|1784450_1786007_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	2.6e-287
SQE66882.1|1786369_1787089_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
SQE66883.1|1787239_1787956_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
SQE66884.1|1788113_1788833_-|protease	Serine protease splD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
SQE66885.1|1788953_1789673_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
SQE66886.1|1789730_1790453_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	4.2e-131
SQE66887.1|1790577_1790754_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	6.7e-27
SQE66888.1|1790800_1791286_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.5	1.8e-82
SQE66889.1|1792249_1792819_+	beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
SQE66890.1|1793292_1793565_-	truncated BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	78.8	2.9e-29
SQE66891.1|1793766_1794240_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66892.1|1794244_1795036_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
SQE66893.1|1795405_1796389_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	5.2e-185
SQE66894.1|1796390_1797095_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	3.9e-134
>prophage 8
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	1883385	1973547	2718283	tRNA,protease,portal,holin,tail,capsid,head,terminase	Staphylococcus_phage(90.91%)	106	NA	NA
SQE66969.1|1883385_1884813_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SQE66970.1|1884825_1886283_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SQE66971.1|1886284_1886587_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQE66972.1|1886953_1888492_+	Sodium/proline symporter	NA	NA	NA	NA	NA
SQE66973.1|1888580_1889780_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
SQE66974.1|1889792_1891796_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
SQE66975.1|1891799_1893992_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
SQE66976.1|1893988_1894681_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
SQE66977.1|1894852_1895155_-	His repressor	NA	NA	NA	NA	NA
SQE66978.1|1895263_1896559_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
SQE66979.1|1897418_1898585_+	Staphopain A precursor	NA	NA	NA	NA	NA
SQE66980.1|1898615_1898942_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQE66981.1|1899233_1899407_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE66982.1|1899387_1899990_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
SQE66983.1|1900260_1901082_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.3	8.8e-69
SQE66984.1|1901074_1902544_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
SQE66985.1|1902727_1903804_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQE66986.1|1903823_1904618_+	ACT domain protein	NA	NA	NA	NA	NA
SQE66987.1|1904807_1906370_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQE66988.1|1906574_1907672_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
SQE66989.1|1908043_1908604_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQE66990.1|1908656_1909586_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQE66991.1|1910005_1911385_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQE66992.1|1911504_1912533_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQE66993.1|1912802_1913204_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
SQE66994.1|1913776_1913950_-	exported protein	NA	NA	NA	NA	NA
SQE66995.1|1914328_1915441_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQE66996.1|1915497_1916340_-	exported protein	NA	NA	NA	NA	NA
SQE66997.1|1916336_1916894_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQE66998.1|1916953_1917478_-	membrane protein	NA	NA	NA	NA	NA
SQE66999.1|1917598_1918162_+	Thioredoxin	NA	NA	NA	NA	NA
SQE67000.1|1918227_1918968_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQE67001.1|1918967_1919840_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
SQE67002.1|1919836_1920517_-	membrane protein	NA	NA	NA	NA	NA
SQE67003.1|1920517_1921414_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQE67004.1|1921410_1921791_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE67005.1|1922049_1922226_-	membrane protein	NA	NA	NA	NA	NA
SQE67006.1|1922766_1924053_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQE67007.1|1924331_1926380_-	MHC class II analog (pseudogene)	NA	NA	NA	NA	NA
SQE67008.1|1926765_1926966_+	beta-hemolysin	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
SQE67009.1|1928140_1928491_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
SQE67010.1|1929000_1929297_-	amidase	NA	R9QTN8	Staphylococcus_phage	99.0	3.0e-51
SQE67011.1|1929987_1930479_-	Staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
SQE67012.1|1930669_1931425_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQE67013.1|1931436_1931691_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQE67014.1|1932221_1932596_-	phage protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
SQE67015.1|1932651_1932939_-	phi PVL ORF 22-like protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
SQE67016.1|1932984_1933137_-	phage protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
SQE67017.1|1933129_1936912_-	phage minor structural, N-terminal region domain protein	NA	A0A1V0E5H3	Staphylococcus_phage	100.0	0.0e+00
SQE67018.1|1936927_1938418_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
SQE67019.1|1938417_1943067_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1V0E5H1	Staphylococcus_phage	100.0	0.0e+00
SQE67020.1|1943304_1943751_-	Bacteriophage	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
SQE67021.1|1943815_1944769_-|tail	phage major tail, phi13 family protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
SQE67022.1|1944769_1945150_-	phi PVL orf 12-like protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
SQE67023.1|1945146_1945524_-	gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
SQE67024.1|1945523_1945859_-|head,tail	phage head-tail adaptor	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
SQE67025.1|1945845_1946178_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
SQE67026.1|1946186_1946345_-	Bacteriophage	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
SQE67027.1|1946380_1947628_-|capsid	phage major capsid protein, HK97 family	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
SQE67028.1|1947715_1948300_-|head,protease	prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
SQE67029.1|1948292_1949543_-|portal	portal protein	portal	R9QSV8	Staphylococcus_phage	100.0	1.7e-236
SQE67030.1|1949548_1949788_-	phi PVL orf 3-like protein	NA	R9QT78	Staphylococcus_phage	100.0	5.3e-35
SQE67031.1|1949762_1951457_-	phage Terminase family protein	NA	A0A1V0E5G5	Staphylococcus_phage	99.8	0.0e+00
SQE67032.1|1951459_1951927_-|terminase	phage terminase small subunit	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
SQE67033.1|1952056_1952410_-	phage endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	1.3e-66
SQE67034.1|1952416_1952869_-	hypothetical phage-related protein	NA	R9QTP3	Staphylococcus_phage	100.0	1.8e-79
SQE67035.1|1952983_1953445_-	Phage protein	NA	R9QT84	Staphylococcus_phage	100.0	8.7e-74
SQE67036.1|1953467_1953671_-	phage protein	NA	R9QT57	Staphylococcus_phage	100.0	6.3e-29
SQE67037.1|1953667_1954318_-	Uncharacterised protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
SQE67038.1|1954324_1954477_-	Uncharacterised protein	NA	A0A2I6PDV2	Staphylococcus_phage	100.0	5.4e-17
SQE67039.1|1954476_1954626_-	transcriptional activator RinB	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
SQE67040.1|1954622_1954829_-	phage protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
SQE67041.1|1954865_1955402_-	dUTPase family protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
SQE67042.1|1955394_1955643_-	Phage protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
SQE67043.1|1955635_1955920_-	phage protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
SQE67044.1|1955916_1956366_-	YopX-family protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
SQE67045.1|1956362_1956557_-	phage protein	NA	A0A2I6PE33	Staphylococcus_phage	100.0	2.5e-27
SQE67046.1|1956553_1956940_-	phage protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
SQE67047.1|1956953_1957196_-	phage family protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
SQE67048.1|1957199_1957568_-	Phage protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
SQE67049.1|1957580_1957985_-	phage protein	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
SQE67050.1|1957993_1958212_-	phage protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
SQE67051.1|1958218_1959112_-	Phage protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
SQE67052.1|1959141_1959612_-	Single-stranded DNA-binding protein, phage associated	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
SQE67053.1|1959612_1960098_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
SQE67054.1|1960310_1961231_-	recombinase, phage RecT family protein	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
SQE67055.1|1961232_1963182_-	Uncharacterized conserved protein	NA	R9QT82	Staphylococcus_phage	100.0	0.0e+00
SQE67056.1|1963184_1963448_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
SQE67057.1|1963456_1963717_-	putative phi PVL-like protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
SQE67058.1|1963809_1963971_-	phage protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
SQE67059.1|1963967_1964288_-	Uncharacterized protein conserved in bacteria	NA	A0A1V0E5D0	Staphylococcus_phage	100.0	1.1e-56
SQE67060.1|1964346_1964574_+	Uncharacterised protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
SQE67061.1|1964575_1964767_-	Uncharacterised protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
SQE67062.1|1964816_1965173_+	Phage protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
SQE67063.1|1965167_1965362_-	phage protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
SQE67064.1|1965377_1966166_-	prophage L54a, antirepressor	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
SQE67065.1|1966181_1966424_-	phage DNA-binding protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
SQE67066.1|1966587_1967304_+	repressor-like protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
SQE67067.1|1967315_1968173_+	HIRAN domain-containing protein	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
SQE67068.1|1968217_1968400_+	Putative cytosolic protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
SQE67069.1|1968456_1968582_+	ORF136	NA	A0A2I6PF02	Staphylococcus_phage	100.0	5.1e-13
SQE67070.1|1968578_1969193_-	phi PVL ORF 30-like protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
SQE67071.1|1969300_1970338_+	DNA integration/recombination/inversion protein	NA	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
SQE67072.1|1970394_1971219_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
SQE67073.1|1971456_1972473_-	gamma-hemolysin component B	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
SQE67074.1|1972494_1973547_-	Leukocidin S subunit	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
>prophage 9
LS483310	Staphylococcus aureus strain NCTC9752 genome assembly, chromosome: 1	2718283	1984961	1996468	2718283	integrase	uncultured_Caudovirales_phage(41.67%)	16	1980769:1980788	1994490:1994509
1980769:1980788	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
SQE67083.1|1984961_1985453_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
SQE67084.1|1985618_1986677_-	pahtogenicity island protein	NA	NA	NA	NA	NA
SQE67085.1|1986663_1986870_-	pathogenicity island protein	NA	NA	NA	NA	NA
SQE67086.1|1987094_1987439_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
SQE67087.1|1988109_1990482_-	Putative DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	40.9	4.4e-145
SQE67088.1|1990573_1990873_-	bovine pathogenicity island protein Orf16	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
SQE67089.1|1990873_1991098_-	pathogenicity island protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	3.4e-15
SQE67090.1|1991087_1991237_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
SQE67091.1|1991233_1991551_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	95.2	2.5e-48
SQE67092.1|1991564_1991861_-	putative prophage antirepressor	NA	A0A2H4JB17	uncultured_Caudovirales_phage	84.7	2.3e-40
SQE67093.1|1991873_1992206_-	putative prophage antirepressor	NA	A0A2H4JB17	uncultured_Caudovirales_phage	82.6	9.4e-46
SQE67094.1|1992209_1992422_-	putative transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	45.5	7.9e-06
SQE67095.1|1992575_1993238_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SQE67096.1|1993250_1994423_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	4.6e-220
SQE67097.1|1994491_1996108_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
1994490:1994509	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
SQE67098.1|1996183_1996468_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
