The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	724164	760029	4648794	transposase,protease	Shigella_phage(66.67%)	35	NA	NA
SQE42716.1|724164_724659_+|protease	hydrogenase 2 maturation protease	protease	NA	NA	NA	NA
SQE42717.1|724651_725140_+	hydrogenase-2 component protein	NA	NA	NA	NA	NA
SQE42718.1|725132_725474_+	hydrogenase nickel incorporation protein HybF	NA	NA	NA	NA	NA
SQE42719.1|725486_725735_+	hydrogenase-2 component protein	NA	NA	NA	NA	NA
SQE42720.1|725857_726724_-	glutathione S-transferase	NA	NA	NA	NA	NA
SQE42721.1|726928_728788_+	bifunctional glutathionylspermidine synthetase/amidase [includes glutathionylspermidine synthase;glutathionylspermidine amidase]	NA	NA	NA	NA	NA
SQE42722.1|729079_730579_+	low-affinity inorganic phosphate transporter 2	NA	NA	NA	NA	NA
SQE42723.1|730627_731320_-	ATP-binding protein YghT	NA	NA	NA	NA	NA
SQE42724.1|731508_732207_+	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA	NA
SQE42725.1|732238_732997_+	ATP-binding protein yghR	NA	NA	NA	NA	NA
SQE42726.1|733042_734392_+	membrane protein, conserved protein	NA	NA	NA	NA	NA
SQE42727.1|734391_735216_+	ybl138	NA	NA	NA	NA	NA
SQE42728.1|735227_735788_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE42729.1|735818_736889_+	putative permease	NA	NA	NA	NA	NA
SQE42730.1|736885_737965_+	putative permease	NA	NA	NA	NA	NA
SQE42731.1|738000_739173_-	putative aminotransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	31.0	7.2e-40
SQE42732.1|739172_739421_-	putative acyl carrier protein	NA	NA	NA	NA	NA
SQE42733.1|739452_740367_-	putative epimerase	NA	NA	NA	NA	NA
SQE42734.1|740363_742085_-	AMP-binding protein	NA	NA	NA	NA	NA
SQE42735.1|742460_743603_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
SQE42736.1|743609_744374_-	DNA-binding transcriptional regulator GlcC	NA	NA	NA	NA	NA
SQE42737.1|744624_746124_+	glycolate oxidase subunit	NA	NA	NA	NA	NA
SQE42738.1|746123_747176_+	glycolate oxidase subunit	NA	NA	NA	NA	NA
SQE42739.1|747186_748410_+	glycolate oxidase iron-sulfur subunit	NA	NA	NA	NA	NA
SQE42740.1|748414_748819_+	protein GlcG	NA	NA	NA	NA	NA
SQE42741.1|748840_751012_+	malate synthase G	NA	NA	NA	NA	NA
SQE42742.1|751366_753049_+	glycolate permease	NA	NA	NA	NA	NA
SQE42743.1|753534_754704_+	inner membrane lipoprotein	NA	NA	NA	NA	NA
SQE42744.1|754707_755556_-|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	58.3	4.6e-89
SQE42745.1|755895_756633_+	Putative peptide transport periplasmic protein	NA	NA	NA	NA	NA
SQE42746.1|757052_757523_+	Putative regulatory protein	NA	NA	NA	NA	NA
SQE42747.1|757560_758139_-|transposase	IS5 transposase and trans-activator	transposase	Q38213	Escherichia_phage	98.4	1.3e-103
SQE42748.1|758239_758872_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE42749.1|759084_759387_-|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
SQE42750.1|759486_760029_+|transposase	IS2, transposase orfB, truncation	transposase	Q9ZXG3	Shigella_phage	95.0	9.8e-101
>prophage 2
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	985332	998514	4648794	tRNA	Escherichia_phage(50.0%)	13	NA	NA
SQE42958.1|985332_986094_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
SQE42959.1|986087_986714_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
SQE42960.1|986853_987993_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
SQE42961.1|988055_988268_+	RNA polymerase sigma factor RpoS	NA	NA	NA	NA	NA
SQE42962.1|988213_989047_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	5.1e-32
SQE42963.1|989140_990505_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
SQE42964.1|990593_991370_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
SQE42965.1|991374_992013_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
SQE42966.1|992009_993272_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
SQE42967.1|993268_994177_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
SQE42968.1|994372_995140_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
SQE42969.1|995190_995847_-	serine/threonine-specific protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
SQE42970.1|995952_998514_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.3e-30
>prophage 3
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	1049594	1055666	4648794		Bacillus_virus(16.67%)	7	NA	NA
SQE43021.1|1049594_1050797_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
SQE43022.1|1051169_1051385_-	Insertion element protein	NA	NA	NA	NA	NA
SQE43023.1|1051540_1051834_+	IS1 protein InsB	NA	U5P0U6	Shigella_phage	92.8	8.3e-46
SQE43024.1|1051927_1052887_-	ribonucleoside-diphosphate reductase 2 beta chain	NA	R4TBI6	Mycobacterium_phage	71.8	3.5e-133
SQE43025.1|1052896_1055041_-	ribonucleoside-diphosphate reductase 2 alpha chain	NA	A8E2R1	Enterococcus_phage	48.4	2.2e-196
SQE43026.1|1055013_1055424_-	ribonucleotide reductase stimulatory protein	NA	A0A142F1R4	Bacillus_phage	44.4	4.6e-18
SQE43027.1|1055420_1055666_-	glutaredoxin-like protein	NA	Q5K5J3	Oenococcus_phage	35.3	1.8e-06
>prophage 4
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	1381146	1387110	4648794	transposase,integrase	Shigella_phage(50.0%)	8	1381058:1381073	1386027:1386042
1381058:1381073	attL	ATGGTGTCCCCTGCAG	NA	NA	NA	NA
SQE43322.1|1381146_1381347_-	response regulator inhibitor for tor operon	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
SQE43323.1|1381471_1381816_-	prophage protein	NA	K7PJY7	Enterobacterial_phage	100.0	5.3e-60
SQE43324.1|1381916_1382096_-	prophage protein	NA	K7PL40	Enterobacteria_phage	98.3	5.6e-29
SQE43325.1|1382202_1382505_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
SQE43326.1|1382717_1383350_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE43327.1|1383551_1384553_-	Acyltransferase family	NA	Q716G0	Shigella_phage	100.0	6.3e-186
SQE43328.1|1384708_1385866_-|integrase	integrase	integrase	Q716F9	Shigella_phage	99.2	3.7e-222
SQE43329.1|1386177_1387110_-	transporter protein	NA	E7DYY8	Enterobacteria_phage	99.0	1.5e-165
1386027:1386042	attR	ATGGTGTCCCCTGCAG	NA	NA	NA	NA
>prophage 5
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	1632917	1642358	4648794		Enterobacteria_phage(85.71%)	10	NA	NA
SQE43545.1|1632917_1633844_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
SQE43546.1|1633848_1634580_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE43547.1|1634560_1634668_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQE43548.1|1634727_1635459_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
SQE43549.1|1635680_1637366_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
SQE43550.1|1637362_1638082_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
SQE43551.1|1638128_1638599_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
SQE43552.1|1638638_1639100_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
SQE43553.1|1639224_1641225_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	95.7	0.0e+00
SQE43554.1|1641221_1642358_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
>prophage 6
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	1727891	1783572	4648794	integrase,coat,transposase	Enterobacteria_phage(18.75%)	54	1781725:1781784	1792286:1792374
SQE43624.1|1727891_1729286_+	colanic acid biosynthesis protein	NA	A0A291LBB9	Klebsiella_phage	31.8	6.3e-19
SQE43625.1|1729460_1730354_+	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	NA	A0A127AW70	Bacillus_phage	42.0	2.3e-46
SQE43626.1|1730726_1731812_+	dTDP-D-glucose 4,6-dehydratase rmlB	NA	I7HTA3	Enterobacteria_phage	53.6	5.7e-100
SQE43627.1|1731811_1732711_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.2	1.3e-28
SQE43628.1|1732769_1733648_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	64.1	6.6e-107
SQE43629.1|1733652_1734198_+	dTDP-4-dehydrorhamnose 3,5-epimerase RfbC	NA	I7HJC4	Enterobacteria_phage	57.3	3.5e-50
SQE43630.1|1734213_1735470_+	putative O-antigen transporter	NA	NA	NA	NA	NA
SQE43631.1|1735499_1736390_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
SQE43632.1|1736418_1737288_+|coat	Spore coat polysaccharide biosynthesis protein spsA	coat	NA	NA	NA	NA
SQE43633.1|1737308_1738457_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43634.1|1739310_1739469_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43635.1|1739559_1740966_+	6-phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	1.1e-37
SQE43636.1|1741214_1742381_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	52.4	1.7e-110
SQE43637.1|1742527_1743505_+	regulator of length of O-antigen component of lipopolysaccharide chains	NA	NA	NA	NA	NA
SQE43638.1|1743601_1744213_-	histidine biosynthesis bifunctional protein [includes phosphoribosyl-AMP cyclohydrolase;phosphoribosyl-ATP pyrophosphatase]	NA	NA	NA	NA	NA
SQE43639.1|1744206_1744983_-	imidazole glycerol phosphate synthase subunit	NA	NA	NA	NA	NA
SQE43640.1|1744964_1745702_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	NA	NA	NA	NA	NA
SQE43641.1|1745701_1746292_-	imidazole glycerol phosphate synthase subunit	NA	NA	NA	NA	NA
SQE43642.1|1746291_1747359_-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase	NA	NA	NA	NA	NA
SQE43643.1|1747358_1748429_-	histidinol-phosphate aminotransferase	NA	NA	NA	NA	NA
SQE43644.1|1748425_1749730_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
SQE43645.1|1749735_1750635_-	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	1.8e-11
SQE43646.1|1751255_1752080_+	protein YeeZ	NA	NA	NA	NA	NA
SQE43647.1|1752104_1753055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE43648.1|1753321_1754680_+	putative amino acid permease	NA	NA	NA	NA	NA
SQE43649.1|1754912_1755917_+	inner membrane protein	NA	NA	NA	NA	NA
SQE43650.1|1755930_1756158_+	SirA family protein	NA	NA	NA	NA	NA
SQE43651.1|1756200_1757628_-	exodeoxyribonuclease I	NA	NA	NA	NA	NA
SQE43652.1|1757816_1758983_+	penicillin-binding protein 6B	NA	B6DZZ7	Stx2-converting_phage	99.5	5.9e-228
SQE43653.1|1759101_1759575_+	DNA gyrase inhibitory protein	NA	NA	NA	NA	NA
SQE43654.1|1759773_1760832_+	inner membrane protein	NA	NA	NA	NA	NA
SQE43655.1|1761003_1761333_+	putative alpha helix protein	NA	NA	NA	NA	NA
SQE43656.1|1762204_1762747_+	bifunctional adenosylcobalamin biosynthesis protein [includes adenosylcobinamide kinase; adenosylcobinamide-phosphate guanylyltransferase]	NA	NA	NA	NA	NA
SQE43657.1|1762743_1763487_+	cobalamin synthase	NA	NA	NA	NA	NA
SQE43658.1|1763498_1764578_+	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE43659.1|1764639_1765566_+	ErfK/YbiS/YcfS/YnhG family protein	NA	NA	NA	NA	NA
SQE43660.1|1765739_1766705_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
SQE43661.1|1766756_1767215_-	putative PTS IIA-like nitrogen-regulatory protein PtsN	NA	NA	NA	NA	NA
SQE43662.1|1767225_1767510_-	PTS system galactitol-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQE43663.1|1767533_1768013_-	PTS system galactitol-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQE43664.1|1768036_1768339_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
SQE43665.1|1768551_1769184_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE43666.1|1769282_1769798_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43667.1|1770705_1771590_+	DNA-binding prophage protein	NA	NA	NA	NA	NA
SQE43668.1|1772961_1773600_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.3	1.1e-29
SQE43669.1|1773693_1774224_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.7	1.4e-30
SQE43670.1|1774787_1775705_+	Nitrogen assimilation regulatory protein nac	NA	NA	NA	NA	NA
SQE43671.1|1775806_1776757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE43672.1|1777063_1778518_+	multidrug efflux system	NA	NA	NA	NA	NA
SQE43673.1|1779146_1779863_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE43674.1|1780205_1781033_-	AMP nucleosidase	NA	NA	NA	NA	NA
SQE43675.1|1781059_1781353_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	92.8	8.3e-46
SQE43676.1|1781508_1781724_+	Insertion element protein	NA	NA	NA	NA	NA
1781725:1781784	attL	ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATAC	NA	NA	NA	NA
SQE43677.1|1782933_1783572_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.3	1.1e-29
SQE43677.1|1782933_1783572_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.3	1.1e-29
1792286:1792374	attR	GTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG	NA	NA	NA	NA
>prophage 7
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	1792716	1804581	4648794	transposase	Shigella_phage(33.33%)	14	NA	NA
SQE43688.1|1792716_1793010_+	IS1 protein InsB	NA	U5P0U6	Shigella_phage	92.8	8.3e-46
SQE43689.1|1793074_1793926_-	chaperone protein	NA	NA	NA	NA	NA
SQE43690.1|1794517_1794844_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	46.3	1.1e-22
SQE43691.1|1795068_1795701_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE43692.1|1795913_1796216_-|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
SQE43693.1|1796184_1796829_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	54.5	1.8e-48
SQE43694.1|1797376_1797760_+	inner membrane protein YedR	NA	NA	NA	NA	NA
SQE43695.1|1797799_1798495_+	putative phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.0	2.8e-07
SQE43696.1|1798561_1799980_+	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	54.8	3.0e-101
SQE43697.1|1799960_1800431_+	patch repair protein	NA	E5E3X5	Burkholderia_phage	47.6	1.5e-33
SQE43698.1|1800419_1801340_-	putative DMT superfamily transporter inner membrane protein	NA	NA	NA	NA	NA
SQE43699.1|1801512_1802430_+	putative methyl-independent mismatch repair protein	NA	NA	NA	NA	NA
SQE43700.1|1802508_1802691_+	putative small protein	NA	NA	NA	NA	NA
SQE43701.1|1802886_1804581_+	cellulose synthesis regulatory protein (signal transduction protein)	NA	A0A127AWB9	Bacillus_phage	35.6	1.3e-18
>prophage 8
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	1840314	1867668	4648794	transposase,integrase	Shigella_phage(37.5%)	26	1840347:1840406	1876572:1877720
SQE43745.1|1840314_1840617_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
1840347:1840406	attL	ACGCGAATCCGCTCAACTGGTCGTTGACCAGAATTACACCGTGGCAGATGCAGCCAGCGC	NA	NA	NA	NA
SQE43746.1|1840829_1841462_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE43747.1|1841337_1841658_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43748.1|1841738_1842938_+|integrase	integrase	integrase	NA	NA	NA	NA
SQE43749.1|1842974_1843211_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43750.1|1843306_1843678_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43751.1|1843703_1844237_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43752.1|1844309_1844744_+	Protein of uncharacterised function (DUF2787)	NA	NA	NA	NA	NA
SQE43753.1|1845354_1846173_-	Protein of uncharacterised function (DUF726)	NA	NA	NA	NA	NA
SQE43754.1|1846234_1847137_-	putative transcriptional regulator, HTH	NA	A0A0R6PH67	Moraxella_phage	31.9	4.4e-37
SQE43755.1|1847515_1847842_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43756.1|1847890_1850491_-	putative DNA-directed DNA polymerase	NA	NA	NA	NA	NA
SQE43757.1|1850537_1851176_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43758.1|1851516_1852647_-|integrase	phage integrase	integrase	A0A221SAN4	Ralstonia_phage	27.6	2.0e-15
SQE43759.1|1852795_1853938_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43760.1|1854246_1855770_+	putative type I methylase	NA	A0A2H4PQP4	Staphylococcus_phage	38.5	4.1e-88
SQE43761.1|1855759_1857004_+	putative restriction-modification DNA specificity domain protein	NA	A0A2H4PQP5	Staphylococcus_phage	22.0	2.6e-08
SQE43762.1|1857000_1857684_+	metal-binding protein	NA	NA	NA	NA	NA
SQE43763.1|1857736_1861021_+	putative type I restriction enzyme HsdR protein	NA	A0A220A398	Liberibacter_phage	27.4	6.9e-64
SQE43764.1|1861017_1861773_+	putative hydrolase	NA	NA	NA	NA	NA
SQE43765.1|1861824_1862334_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43766.1|1862391_1864263_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQE43767.1|1864995_1865736_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43768.1|1865816_1867019_+|integrase	integrase	integrase	NA	NA	NA	NA
SQE43769.1|1867050_1867302_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE43770.1|1867461_1867668_-|transposase	transposase (partial)	transposase	Q716C2	Shigella_phage	92.6	1.3e-32
1876572:1877720	attR	GCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTATGGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAGCCCCAGAAAGATAAAGCCGTCATTAACATGGGTGATTTTAGTCTTATCCATGTTCAGCCTGAGTTTCAGACTGCCTTCGAGCACACCCCGACACTCCTCCCTGATGGCTTCCGCCTGTGCTTTGGTGCCTTTGACGATGAGGACAAAATCATCGGCATAGCGGCAGTACGCCACCGCGGGTTTCCACTGCCAGTTTTCTCTGACCGCCGTACTTCGGCCCCGTTGGATACTGTTATTCCAGTACCACCGATCTTTTCTGGCTTTCCCGCTCAGGTAGCGCTCATGCAGGTATTGATCGAACTCATTCAGCATGATGTTCGATAATAGCGGCGATATAACACCGCCCTGTGGCACACCTTCACTGGCCGCCCGAAAGAGACCGACATCGATATGTCCCGCCTTGATGGTTTTCCACAGCAGAGTCATGAAACGTGCGTCACTGATCCTGCGGCGTACAGCCTTCATCAGCAGTCGATGATGTACGGTGTCGAAGTAACTGGACAGGTCGCCTTCAATCACCCAGCGTTCCCGGGTTTCACCACAGTCTGTGAGCTGTAATTTCACCGTGCGGATCGCGTGGTGGACACTGCGCTCAGGCCGGAAGCCATATGAGAGCGTATGAAAATCACTCTCCCATATCGGCTCCATCGCCATCAGCATGGCCCGCTGAACAATACGATCCCGCAACGCGGGGATACCCAGTGGTCGCAGTTTGCCGTTGCTTTTAGGGATGTAAACCCGTCTGGCGGGCAAGGGCTGGTAGTGGCCTGAGAGTAATTCATCCCTGAGGATTTGCAGCTCAACAGCCAGTCTGGCCTGTAGCATTGTTTTGTTCACGCCATCAACGCCGGGGGTATGGGCCCCCTTTGATGAAAGCGTGATCCGCGCCGCTTCAGCCAGCCATTCTGGTTGTGTTATCAGACGCAGCAGCCGTTGAATCCGTAGGGACGGATCGGTGACTGCCCATGTGGCAAGCTTGCGTTG	NA	NA	NA	NA
>prophage 9
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	2197880	2294215	4648794	tail,terminase,protease,portal,lysis,transposase,head	Enterobacteria_phage(41.46%)	93	NA	NA
SQE44090.1|2197880_2198702_-|protease	putative protease	protease	NA	NA	NA	NA
SQE44091.1|2198977_2199286_-	acid shock protein	NA	NA	NA	NA	NA
SQE44092.1|2199709_2200963_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE44093.1|2201069_2201963_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE44094.1|2202097_2203318_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
SQE44095.1|2203442_2204138_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
SQE44096.1|2204090_2205347_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
SQE44097.1|2205541_2206156_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
SQE44098.1|2206198_2207053_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
SQE44099.1|2207054_2207672_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
SQE44100.1|2207682_2210079_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	4.8e-208
SQE44101.1|2210166_2212593_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	4.5e-214
SQE44102.1|2212791_2213097_-	protein	NA	NA	NA	NA	NA
SQE44103.1|2213168_2213915_+	lipoprotein	NA	NA	NA	NA	NA
SQE44104.1|2213917_2214478_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
SQE44105.1|2214512_2214854_-	protein	NA	NA	NA	NA	NA
SQE44106.1|2214988_2215315_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
SQE44107.1|2215520_2216138_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	35.9	1.9e-20
SQE44108.1|2216207_2216510_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
SQE44109.1|2216722_2217355_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE44110.1|2217495_2218455_+	putative pathogenicity island protein	NA	NA	NA	NA	NA
SQE44111.1|2218861_2219575_+	putative AraC-type regulatory protein encoded in prophage	NA	NA	NA	NA	NA
SQE44112.1|2219765_2219981_+|lysis	lysis protein S from lambdoid prophage	lysis	A5LH82	Enterobacteria_phage	94.4	2.9e-32
SQE44113.1|2219985_2220204_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	63.8	1.6e-17
SQE44114.1|2220228_2220525_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44115.1|2220652_2221186_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	94.9	2.6e-98
SQE44116.1|2221182_2221680_+	Qin prophage protein	NA	NA	NA	NA	NA
SQE44117.1|2222930_2223104_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
SQE44118.1|2223399_2223606_+	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	79.4	3.4e-22
SQE44119.1|2224158_2224653_+	prophage protein	NA	A0A291AWV8	Escherichia_phage	99.4	2.2e-83
SQE44120.1|2224652_2226755_+|terminase	DNA packaging protein of prophage (terminase large subunit)	terminase	A0A291AWY5	Escherichia_phage	96.4	0.0e+00
SQE44121.1|2226751_2226964_+	prophage protein	NA	A5LH28	Enterobacteria_phage	100.0	1.1e-31
SQE44122.1|2226963_2228472_+|head,tail,portal	portal protein (head-tail preconnector protein) from prophage	head,tail,portal	K7PJP3	Enterobacteria_phage	99.4	2.3e-288
SQE44123.1|2228416_2230444_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	K7PGT6	Enterobacteria_phage	99.2	0.0e+00
SQE44124.1|2230530_2230854_+	prophage protein	NA	K7PLV6	Enterobacteria_phage	98.1	2.5e-51
SQE44125.1|2230846_2231122_+	prophage protein	NA	K7PH43	Enterobacteria_phage	100.0	2.3e-45
SQE44126.1|2231133_2231712_+|tail	Minor tail protein Z (GPZ) of prophage	tail	A5LH33	Enterobacteria_phage	97.9	1.8e-100
SQE44127.1|2231708_2232110_+|tail	Minor tail protein U	tail	A0A291AWY2	Escherichia_phage	100.0	8.3e-73
SQE44128.1|2232121_2232865_+|tail	Major tail protein V	tail	A0A291AWU6	Escherichia_phage	99.6	6.6e-132
SQE44129.1|2232925_2233312_+|tail	minor tail component of prophage	tail	A0A291AWW5	Escherichia_phage	100.0	1.6e-65
SQE44130.1|2233320_2233650_+|tail	minor tail protein T of prophage	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
SQE44131.1|2233621_2236687_+|tail	putative tail length tape measure protein from putative prophage	tail	A0A291AWX1	Escherichia_phage	99.2	0.0e+00
SQE44132.1|2236686_2237016_+|tail	Minor tail protein M	tail	A5LH39	Enterobacteria_phage	99.1	1.1e-59
SQE44133.1|2237025_2237724_+|tail	phage minor tail protein	tail	A5LH40	Enterobacteria_phage	99.1	4.3e-133
SQE44134.1|2237729_2238473_+|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	98.4	3.1e-150
SQE44135.1|2238469_2239018_+	Tail assembly protein I from prophage	NA	A0A291AWV5	Escherichia_phage	98.9	2.6e-93
SQE44136.1|2239078_2242576_+	Host specificity protein J of prophage	NA	A0A291AWT4	Escherichia_phage	97.4	0.0e+00
SQE44137.1|2242646_2243246_+	outer membrane precursor Lom	NA	A5LH44	Enterobacteria_phage	97.5	8.2e-109
SQE44138.1|2243807_2244545_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44139.1|2244675_2246709_+|tail	phage tail domain-containing protein	tail	X2KTY7	Enterobacteria_phage	56.5	9.7e-194
SQE44140.1|2247381_2247972_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.2e-24
SQE44141.1|2248288_2248522_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
SQE44142.1|2249308_2250592_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
SQE44143.1|2250680_2252141_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
SQE44144.1|2252176_2252380_-	selenium carrying protein	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
SQE44145.1|2252556_2253243_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE44146.1|2253331_2254078_-	NADP-dependent L-serine/L-allo-threonine dehydrogenase	NA	NA	NA	NA	NA
SQE44147.1|2254214_2256260_+	dipeptidyl carboxypeptidase II	NA	NA	NA	NA	NA
SQE44148.1|2256303_2256822_-	competence damage-inducible protein A	NA	NA	NA	NA	NA
SQE44149.1|2257097_2257490_+	stress response protein	NA	NA	NA	NA	NA
SQE44150.1|2257744_2258635_+	putative signal transduction protein	NA	A0A127AWB9	Bacillus_phage	37.7	1.1e-19
SQE44151.1|2259075_2260263_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE44152.1|2260457_2261357_+	amino acid metabolite efflux	NA	NA	NA	NA	NA
SQE44153.1|2261387_2261606_-	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
SQE44154.1|2261637_2262021_-	DNA-binding transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
SQE44155.1|2262040_2262475_-	multiple antibiotic resistance regulatory protein	NA	NA	NA	NA	NA
SQE44156.1|2262686_2263352_+	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
SQE44157.1|2263376_2264567_-	sugar efflux transporter	NA	NA	NA	NA	NA
SQE44158.1|2264716_2265832_-	protein	NA	NA	NA	NA	NA
SQE44159.1|2265909_2266791_-	transcriptional regulator YneJ	NA	NA	NA	NA	NA
SQE44160.1|2266891_2268280_+	succinate semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQE44161.1|2268343_2269270_+	glutaminase 2	NA	NA	NA	NA	NA
SQE44162.1|2269269_2269629_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE44163.1|2269767_2271186_+	putative signal transduction protein	NA	G3MA91	Bacillus_virus	29.6	1.9e-18
SQE44164.1|2271412_2272864_+	altronate oxidoreductase	NA	NA	NA	NA	NA
SQE44165.1|2273070_2273985_+	inner membrane protein	NA	NA	NA	NA	NA
SQE44166.1|2273988_2274747_-	trans-aconitate methyltransferase	NA	NA	NA	NA	NA
SQE44167.1|2274803_2275094_-	autoinducer-2 (AI-2) modifying protein LsrG	NA	NA	NA	NA	NA
SQE44168.1|2275117_2275993_-	putative aldolase	NA	NA	NA	NA	NA
SQE44169.1|2276019_2277042_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE44170.1|2277053_2278046_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE44171.1|2278045_2279074_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE44172.1|2279067_2280603_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	4.4e-21
SQE44173.1|2280851_2281805_+	putative sugar-binding regulatory protein	NA	NA	NA	NA	NA
SQE44174.1|2281883_2283476_+	putative carbohydrate kinase	NA	NA	NA	NA	NA
SQE44175.1|2284006_2288029_+	lipoprotein/autotransporter domain-containing protein	NA	NA	NA	NA	NA
SQE44176.1|2288025_2289426_+	lipoprotein/autotransporter domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	49.2	4.0e-106
SQE44177.1|2289648_2289915_+	DNA-binding transcriptional regulator HipB	NA	NA	NA	NA	NA
SQE44178.1|2289914_2291237_+	protein hipA	NA	NA	NA	NA	NA
SQE44179.1|2291435_2291807_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44180.1|2291849_2292317_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44181.1|2292316_2292586_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44182.1|2292817_2294215_-|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 10
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	2453237	2460508	4648794	tRNA	Enterobacteria_phage(33.33%)	8	NA	NA
SQE44312.1|2453237_2453465_+	putative outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	65.7	7.9e-20
SQE44313.1|2453591_2454371_+	outer membrane protein N (porin)	NA	Q1MVN1	Enterobacteria_phage	56.4	9.5e-73
SQE44314.1|2454511_2454946_+	putative universal stress protein	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
SQE44315.1|2455122_2456058_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	97.7	1.1e-144
SQE44316.1|2456186_2457560_-	ATP-independent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
SQE44317.1|2457589_2457763_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44318.1|2458037_2459021_-	zinc transport protein	NA	NA	NA	NA	NA
SQE44319.1|2459275_2460508_+	putative signaling protein	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
>prophage 11
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	2658078	2672101	4648794	transposase,tail,integrase	Enterobacteria_phage(50.0%)	14	2665238:2665251	2672928:2672941
SQE44510.1|2658078_2659677_-|tail	putative tail fiber protein	tail	K7PHC9	Enterobacteria_phage	71.8	3.4e-40
SQE44511.1|2659807_2660545_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE44512.1|2661106_2661706_-	outer membrane precursor Lom	NA	A5LH44	Enterobacteria_phage	97.5	8.2e-109
SQE44513.1|2661775_2665189_-|tail	tail component of prophage CP-933K	tail	K7PKJ2	Enterobacteria_phage	97.1	0.0e+00
2665238:2665251	attL	AAACATTTTGCATC	NA	NA	NA	NA
SQE44514.1|2665249_2665921_-|tail	phage tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	98.7	1.5e-103
SQE44515.1|2666074_2666377_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	97.0	6.1e-44
SQE44516.1|2666589_2667222_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE44517.1|2667350_2667509_+	phage protein	NA	M1FJ61	Enterobacteria_phage	88.5	6.4e-21
SQE44518.1|2667505_2668570_+	DNA thiolation protein; phage protein	NA	T1SBJ4	Salmonella_phage	65.1	2.0e-134
SQE44519.1|2668723_2668942_+	ybl16	NA	M1FQT7	Enterobacteria_phage	98.6	1.7e-35
SQE44520.1|2668989_2669229_+	bacteriophage protein	NA	M1FPC8	Enterobacteria_phage	94.9	3.9e-38
SQE44521.1|2669368_2669605_+	excisionase	NA	NA	NA	NA	NA
SQE44522.1|2669594_2670737_+|integrase	prophage lambda integrase	integrase	Q77Z02	Phage_21	100.0	3.6e-206
SQE44523.1|2670850_2672101_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
2672928:2672941	attR	GATGCAAAATGTTT	NA	NA	NA	NA
>prophage 12
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	3524899	3584646	4648794	holin,transposase	Shigella_phage(53.85%)	59	NA	NA
SQE45303.1|3524899_3526570_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	3.6e-61
SQE45304.1|3526782_3527451_+	inner membrane protein	NA	NA	NA	NA	NA
SQE45305.1|3527693_3528389_-	transporter	NA	NA	NA	NA	NA
SQE45306.1|3528381_3529809_-	putative electron transport protein YkgF	NA	NA	NA	NA	NA
SQE45307.1|3529819_3530539_-	hydroxyacid oxidoreductase (Fe-S centre)	NA	NA	NA	NA	NA
SQE45308.1|3531066_3531921_-	transcriptional regulator YkgD	NA	NA	NA	NA	NA
SQE45309.1|3532146_3533472_+	putative pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	8.5e-114
SQE45310.1|3533828_3534422_+	inner membrane protein	NA	NA	NA	NA	NA
SQE45311.1|3535011_3535863_+	Putatve transcriptional regulator ykgA	NA	NA	NA	NA	NA
SQE45312.1|3535819_3535978_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45313.1|3536002_3540259_-	Ig domain-containing protein	NA	NA	NA	NA	NA
SQE45314.1|3541373_3541475_+	small predicted membrane protein	NA	NA	NA	NA	NA
SQE45315.1|3541835_3542102_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQE45316.1|3542101_3542242_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
SQE45317.1|3543326_3543869_+	putative fimbrial transcriptional regulator	NA	NA	NA	NA	NA
SQE45318.1|3543943_3544531_+	fimbrillin	NA	NA	NA	NA	NA
SQE45319.1|3544588_3545257_+	putative fimbrial protein	NA	NA	NA	NA	NA
SQE45320.1|3545282_3547808_+	putative fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
SQE45321.1|3547797_3549441_+	putative fimbrial protein	NA	NA	NA	NA	NA
SQE45322.1|3549409_3550120_+	putative fimbrial protein	NA	NA	NA	NA	NA
SQE45323.1|3551009_3551624_-	integral membrane protein	NA	NA	NA	NA	NA
SQE45324.1|3552041_3552731_+	putative xanthine dehydrogenase, iron-sulfur binding subunit	NA	NA	NA	NA	NA
SQE45325.1|3552727_3553684_+	putative xanthine dehydrogenase, FAD-binding subunit	NA	NA	NA	NA	NA
SQE45326.1|3553680_3554565_+	putative xanthine dehydrogenase, molybdenum-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	29.0	1.3e-12
SQE45327.1|3554724_3555879_+	putative xanthine dehydrogenase, molybdenum-binding subunit	NA	NA	NA	NA	NA
SQE45328.1|3555888_3556845_+	xanthine dehydrogenase accessory factor	NA	NA	NA	NA	NA
SQE45329.1|3556823_3557234_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE45330.1|3557966_3558881_+	bactoprenol glucosyl transferase; CPS-53 (KpLE1) prophage	NA	U5P087	Shigella_phage	99.7	1.0e-171
SQE45331.1|3558882_3560196_+	CPS-53 (KpLE1) prophage; putative inner membrane protein	NA	U5P0I5	Shigella_phage	99.5	6.0e-237
SQE45332.1|3560232_3560844_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45333.1|3560870_3561068_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	98.4	3.0e-28
SQE45334.1|3561124_3561427_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
SQE45335.1|3561639_3562272_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	95.7	1.3e-120
SQE45336.1|3562672_3563926_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
SQE45337.1|3563937_3565041_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
SQE45338.1|3565328_3566384_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	60.6	1.7e-117
SQE45339.1|3566422_3566824_-	sigma factor-binding protein crl (curlin genes transcriptional activator)	NA	NA	NA	NA	NA
SQE45340.1|3566881_3568126_-	esterase	NA	NA	NA	NA	NA
SQE45341.1|3568217_3568676_-	xanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE45342.1|3568936_3570394_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
SQE45343.1|3570450_3570951_-	peptide chain release factor H	NA	NA	NA	NA	NA
SQE45344.1|3570919_3571186_-	ykfJ	NA	NA	NA	NA	NA
SQE45345.1|3571419_3571794_-	putative acetyltransferase	NA	NA	NA	NA	NA
SQE45346.1|3571881_3572280_-	toxin YafO	NA	NA	NA	NA	NA
SQE45347.1|3572282_3572576_-	antitoxin of the YafO-YafN toxin-antitoxin system	NA	NA	NA	NA	NA
SQE45348.1|3572627_3573683_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQE45349.1|3573753_3574677_-	lateral flagellar motor protein B (MotB-like)	NA	NA	NA	NA	NA
SQE45350.1|3574679_3575543_-	lateral flagellar motor protein A (MotA-like)	NA	NA	NA	NA	NA
SQE45351.1|3575555_3576272_-	flagellar biosynthesis sigma factor	NA	NA	NA	NA	NA
SQE45352.1|3576291_3576759_-	lateral flagellar associated protein (FliL-like)	NA	NA	NA	NA	NA
SQE45353.1|3576766_3577828_-	lateral flagellar hook length control protein (FliK-like)	NA	NA	NA	NA	NA
SQE45354.1|3577824_3578070_-	lateral flagellar chaperone protein (FliT-like)	NA	NA	NA	NA	NA
SQE45355.1|3578074_3578467_-	lateral flagellar chaperone protein (FliS-like)	NA	NA	NA	NA	NA
SQE45356.1|3578489_3579806_-	lateral flagellar hook associated protein 2 (FliD-like)	NA	NA	NA	NA	NA
SQE45357.1|3580057_3580972_-	lateral flagellin FliC-like protein	NA	NA	NA	NA	NA
SQE45358.1|3581457_3582300_+	lateral flagellar transcriptional regulator	NA	NA	NA	NA	NA
SQE45359.1|3582354_3583332_-	lateral flagellar putative hook associated protein	NA	NA	NA	NA	NA
SQE45360.1|3583498_3584131_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.6	9.0e-122
SQE45361.1|3584343_3584646_-|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
>prophage 13
LS483303	Escherichia coli strain NCTC9967 genome assembly, chromosome: 1	4648794	4127895	4168800	4648794	transposase,integrase,tRNA	Escherichia_phage(38.46%)	49	4148913:4148962	4178010:4178059
SQE45857.1|4127895_4128873_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A2K9KZX5	Tupanvirus	28.2	6.8e-28
SQE45858.1|4129197_4131006_+	fumarate reductase flavoprotein subunit	NA	NA	NA	NA	NA
SQE45859.1|4130998_4131733_+	fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
SQE45860.1|4131743_4132139_+	fumarate reductase subunit C	NA	NA	NA	NA	NA
SQE45861.1|4132149_4132509_+	fumarate reductase subunit D	NA	NA	NA	NA	NA
SQE45862.1|4132571_4133705_+	beta-lactamase	NA	NA	NA	NA	NA
SQE45863.1|4133793_4134327_+	outer membrane lipoprotein	NA	A0A1W6JNX6	Morganella_phage	55.0	3.6e-47
SQE45864.1|4134323_4134641_-	quaternary ammonium compound-resistance protein	NA	NA	NA	NA	NA
SQE45865.1|4134822_4134969_-	entericidin B	NA	NA	NA	NA	NA
SQE45866.1|4135079_4135205_-	entericidin A	NA	NA	NA	NA	NA
SQE45867.1|4135256_4135823_-	elongation factor P (EF-P)	NA	NA	NA	NA	NA
SQE45868.1|4135864_4136893_+	radical SAM superfamily protein	NA	NA	NA	NA	NA
SQE45869.1|4137287_4138157_+	protein	NA	NA	NA	NA	NA
SQE45870.1|4138349_4138703_-	putative lipoprotein	NA	NA	NA	NA	NA
SQE45871.1|4138840_4140487_-	chaperonin Cpn60	NA	A0A2I7SAK5	Vibrio_phage	68.9	5.3e-190
SQE45872.1|4140530_4140824_-	10 kDa chaperonin (Protein Cpn10) (groES protein)	NA	K4F9I2	Cronobacter_phage	45.4	9.2e-13
SQE45873.1|4141099_4142356_+	inner membrane protein YjeH	NA	NA	NA	NA	NA
SQE45874.1|4142371_4142848_-	protein FxsA (suppressor of F exclusion of phage T7)	NA	NA	NA	NA	NA
SQE45875.1|4143184_4144621_+	aspartate ammonia-lyase	NA	NA	NA	NA	NA
SQE45876.1|4144738_4146040_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
SQE45877.1|4146155_4146494_+	divalent cation tolerance protein	NA	NA	NA	NA	NA
SQE45878.1|4146469_4148167_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SQE45879.1|4148203_4148779_+	putative transcriptional regulator	NA	NA	NA	NA	NA
4148913:4148962	attL	GGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCAA	NA	NA	NA	NA
SQE45880.1|4149675_4150263_+	Uncharacterised protein	NA	O21975	Escherichia_phage	57.5	3.4e-59
SQE45881.1|4150609_4151794_+|integrase	integrase	integrase	A0A221SAN4	Ralstonia_phage	32.6	3.3e-32
SQE45882.1|4151849_4152206_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45883.1|4152255_4154181_-	inner membrane protein from phage origin	NA	A0A1B0VP75	Pseudomonas_phage	26.5	4.8e-17
SQE45884.1|4154254_4155565_-|integrase	phage integrase	integrase	Q9T1P3	Pseudomonas_phage	29.5	8.9e-23
SQE45885.1|4156083_4156437_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45886.1|4156429_4156861_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45887.1|4156907_4157336_+	Protein of uncharacterised function (DUF2787)	NA	NA	NA	NA	NA
SQE45888.1|4157394_4157859_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45889.1|4157837_4158077_+	DeoR-like helix-turn-helix domain	NA	NA	NA	NA	NA
SQE45890.1|4158154_4158538_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45891.1|4158681_4159431_+	putative oxidoreductase	NA	NA	NA	NA	NA
SQE45892.1|4159533_4160247_+	putative DNA-binding protein	NA	NA	NA	NA	NA
SQE45893.1|4160305_4160617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE45894.1|4160690_4160996_+	Permease, cytosine/purine, uracil, thiamine, allantoin family	NA	A0A2L1IV26	Escherichia_phage	96.2	3.9e-06
SQE45895.1|4160930_4161308_-|transposase	IS1 transposase	transposase	Q71TF0	Escherichia_phage	98.4	2.4e-66
SQE45896.1|4161379_4161595_+	Insertion element protein	NA	NA	NA	NA	NA
SQE45897.1|4162126_4162321_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE45898.1|4162622_4163126_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	99.4	4.8e-94
SQE45899.1|4163444_4165127_+	outer membrane usher protein	NA	NA	NA	NA	NA
SQE45900.1|4165148_4165898_+	putative fimbrial chaperone	NA	NA	NA	NA	NA
SQE45901.1|4165899_4166964_+	protein involved in detoxification of methylglyoxal	NA	NA	NA	NA	NA
SQE45902.1|4167006_4167207_-	glycogen synthesis protein GlgS	NA	NA	NA	NA	NA
SQE45903.1|4167475_4168069_+	membrane protein YqiJ	NA	NA	NA	NA	NA
SQE45904.1|4168102_4168378_+|transposase	IS1 transposase	transposase	Q71TE9	Escherichia_phage	97.8	5.0e-45
SQE45905.1|4168422_4168800_+|transposase	IS1 transposase	transposase	Q71TF0	Escherichia_phage	100.0	1.3e-67
4178010:4178059	attR	GGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCAA	NA	NA	NA	NA
