The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	294904	342917	2421598	capsid,portal,tail,tRNA,head,transposase,terminase	Streptococcus_phage(54.84%)	49	NA	NA
SQE54049.1|294904_296047_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	89.2	3.8e-195
SQE54050.1|296698_297004_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54051.1|297146_299189_+	efflux ABC transporter permease	NA	NA	NA	NA	NA
SQE54052.1|299397_300870_+	Protein of uncharacterised function (DUF2397)	NA	NA	NA	NA	NA
SQE54053.1|300850_301972_+	Protein of uncharacterised function (DUF2398)	NA	NA	NA	NA	NA
SQE54054.1|301961_306020_+	ATPase involved in DNA repair	NA	NA	NA	NA	NA
SQE54055.1|306012_307254_+	Protein of uncharacterised function C-terminus (DUF2399)	NA	NA	NA	NA	NA
SQE54056.1|307303_309103_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.9	1.4e-71
SQE54057.1|309415_312142_+	phage infection protein	NA	NA	NA	NA	NA
SQE54058.1|312293_313325_+|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE54059.1|313499_314666_-	Site-specific recombinase XerD	NA	C5J953	Streptococcus_phage	42.4	8.6e-78
SQE54060.1|314864_315011_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54061.1|314992_315667_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54062.1|316075_316771_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54063.1|316796_317222_-	putative Zn peptidase	NA	A0A1P8VVK5	Streptococcus_phage	33.3	1.1e-06
SQE54064.1|317233_317566_-	Helix-turn-helix.	NA	A0A141DZM2	Streptococcus_phage	45.1	2.7e-21
SQE54065.1|317859_318051_+	phage DNA-binding protein	NA	Q9AZF4	Lactococcus_phage	41.3	2.4e-06
SQE54066.1|318200_318365_-	Uncharacterised protein	NA	A0A0A7RTS6	Clostridium_phage	71.7	2.1e-14
SQE54067.1|318492_318708_+	conjugal transfer protein TrbA	NA	D2IZX1	Enterococcus_phage	55.6	3.7e-11
SQE54068.1|318688_319456_+	toxin-antitoxin system, toxin component, Bro family	NA	A0A0A7DN31	Lactobacillus_phage	70.2	3.4e-83
SQE54069.1|319468_319747_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54070.1|319794_320028_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54071.1|320029_320233_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54072.1|320216_320351_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54073.1|320403_320781_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54074.1|320777_321704_+	Uncharacterised protein	NA	A0A2P1JTZ5	Anoxybacillus_phage	60.7	1.0e-89
SQE54075.1|321675_322422_+	prophage Lp1 protein 19	NA	E9LUM4	Lactobacillus_phage	49.8	1.7e-55
SQE54076.1|322360_322606_+	phage protein	NA	A0A0S2MWM9	Cellulophaga_phage	50.0	2.2e-12
SQE54077.1|322608_322884_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54078.1|322977_323448_+	phage transcriptional regulator, ArpU family	NA	D7RWH7	Brochothrix_phage	28.8	1.9e-07
SQE54079.1|324286_324433_-	Ribbon-helix-helix domain	NA	A0A286QP89	Streptococcus_phage	68.2	7.5e-08
SQE54080.1|324530_325325_+	HNH endonuclease	NA	A0A0B5A095	Streptococcus_phage	41.7	5.9e-54
SQE54081.1|325470_326703_+|portal	Phage portal protein, SPP1 Gp6-like	portal	A0A126GGJ2	Streptococcus_phage	75.8	4.0e-182
SQE54082.1|326695_328048_+|head	minor head protein	head	M1Q184	Streptococcus_phage	40.4	2.4e-55
SQE54083.1|328053_328218_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54084.1|328485_329892_+|terminase	Phage terminase-like protein, large subunit	terminase	A0A1P8BMS5	Lactococcus_phage	76.1	2.5e-220
SQE54085.1|329958_330435_+	Uncharacterised protein	NA	M1NS07	Streptococcus_phage	41.3	6.3e-19
SQE54086.1|330450_331356_+|capsid	phage major capsid protein, HK97 family	capsid	A0A126GGI3	Streptococcus_phage	83.6	2.1e-140
SQE54087.1|331368_331644_+	HeH/LEM domain	NA	A0A1S5SG46	Streptococcus_phage	39.3	6.0e-06
SQE54088.1|331655_332051_+	Phage protein Gp19/Gp15/Gp42	NA	A0A1X9I730	Streptococcus_phage	73.3	5.9e-47
SQE54089.1|332037_332376_+	Uncharacterised protein	NA	A0A1B1IMZ5	Lactococcus_phage	72.1	2.9e-42
SQE54090.1|332368_332605_+	Uncharacterised protein	NA	M1NRG9	Streptococcus_phage	74.4	1.3e-22
SQE54091.1|332605_332941_+	Uncharacterised protein	NA	A0A1P8BMR5	Lactococcus_phage	74.8	7.7e-40
SQE54092.1|332953_333508_+	Uncharacterised protein	NA	A0A1P8BMS0	Lactococcus_phage	73.9	2.2e-71
SQE54093.1|333533_333794_+	Uncharacterised protein	NA	A0A0B5A2F3	Streptococcus_phage	57.6	4.0e-20
SQE54094.1|333808_334186_+	Uncharacterised protein	NA	A0A1S5SGD4	Streptococcus_phage	55.4	2.2e-30
SQE54095.1|334175_336533_+|tail	minor tail domain protein	tail	A0A1B1IMY1	Lactococcus_phage	54.7	1.3e-125
SQE54096.1|336516_338022_+	Phage-related protein	NA	A0A0B5A078	Streptococcus_phage	31.9	5.7e-58
SQE54097.1|338021_342917_+	Uncharacterised protein	NA	Q2I7P5	Streptococcus_phage	45.1	3.4e-107
>prophage 2
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	666657	701622	2421598	transposase,protease,tRNA	Enterococcus_phage(27.27%)	35	NA	NA
SQE54410.1|666657_669297_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.5	5.9e-159
SQE54411.1|669368_670673_+	folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
SQE54412.1|670682_671339_+	HAD-superfamily hydrolase	NA	NA	NA	NA	NA
SQE54413.1|671448_672117_+	DNA repair protein RadC	NA	NA	NA	NA	NA
SQE54414.1|672190_672769_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE54415.1|672792_673611_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.8	7.7e-57
SQE54416.1|673694_675374_-	ribonuclease J 1	NA	NA	NA	NA	NA
SQE54417.1|675375_675588_-	Protein of uncharacterised function DUF1447	NA	NA	NA	NA	NA
SQE54418.1|675856_676450_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.8	8.0e-56
SQE54419.1|676647_677181_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54420.1|677192_678104_+|tRNA	tRNA dimethylallyltransferase	tRNA	NA	NA	NA	NA
SQE54421.1|678127_679342_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
SQE54422.1|679634_680015_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SQE54423.1|680058_680865_+	glutamate--ammonia ligase	NA	NA	NA	NA	NA
SQE54424.1|681026_681398_+	glutamate--ammonia ligase	NA	NA	NA	NA	NA
SQE54425.1|681919_683524_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.3	3.0e-145
SQE54426.1|683739_684609_+	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
SQE54427.1|684833_685556_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE54428.1|685739_686999_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	NA	NA	NA	NA	NA
SQE54429.1|687006_688320_+	transcription termination factor Rho	NA	NA	NA	NA	NA
SQE54430.1|688427_688676_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQE54431.1|688945_689098_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54432.1|689673_690816_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	90.7	6.2e-198
SQE54433.1|691168_691471_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQE54434.1|691668_692013_+	Guanosine polyphosphate pyrophosphohydrolases/synthetases	NA	A0A141E1X8	Streptococcus_phage	61.4	2.2e-29
SQE54435.1|692066_692447_-	Protein of uncharacterised function (DUF1696).	NA	A6N235	Microbacterium_phage	35.6	1.2e-09
SQE54436.1|692575_693538_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	69.1	1.0e-124
SQE54437.1|693553_695713_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	62.3	9.8e-261
SQE54438.1|695828_696050_-	glutaredoxin	NA	A0A0M7REK7	Lactobacillus_phage	47.2	1.1e-10
SQE54439.1|696965_697109_-	integral membrane protein	NA	NA	NA	NA	NA
SQE54440.1|697326_697800_+	ferrous iron transport protein A	NA	NA	NA	NA	NA
SQE54441.1|697792_699943_+	ferrous iron transport protein B	NA	NA	NA	NA	NA
SQE54442.1|699939_700095_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54443.1|700201_700780_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE54444.1|700803_701622_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.1e-55
>prophage 3
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1011152	1024961	2421598	transposase,integrase	unidentified_phage(50.0%)	17	1011062:1011077	1012186:1012201
1011062:1011077	attL	CAAGTTGGACACTTTT	NA	NA	NA	NA
SQE54899.1|1011152_1012112_+|integrase	integrase	integrase	H7BUM7	unidentified_phage	37.2	8.5e-39
SQE54900.1|1012413_1013916_+	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
1012186:1012201	attR	AAAAGTGTCCAACTTG	NA	NA	NA	NA
SQE54901.1|1014593_1015982_+	group II intron reverse transcriptase maturase	NA	H7BWD2	unidentified_phage	28.1	7.7e-09
SQE54902.1|1016180_1016375_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54903.1|1016355_1016706_+	IS66 Orf2-like protein	NA	NA	NA	NA	NA
SQE54905.1|1016760_1016988_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
SQE54906.1|1016944_1017595_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
SQE54907.1|1017685_1018300_+|transposase	IS66 family transposase	transposase	S5VTP8	Leptospira_phage	33.3	1.0e-13
SQE54908.1|1018564_1018840_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
SQE54909.1|1018854_1019034_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SQE54910.1|1019065_1019422_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54911.1|1019463_1019613_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
SQE54912.1|1019636_1020620_+	cobalamin synthesis protein	NA	NA	NA	NA	NA
SQE54913.1|1020664_1020772_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE54914.1|1020789_1022313_+	periplasmic solute binding family protein	NA	NA	NA	NA	NA
SQE54916.1|1023540_1024359_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.8	6.5e-56
SQE54917.1|1024382_1024961_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
>prophage 4
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1061715	1070176	2421598		Synechococcus_phage(50.0%)	8	NA	NA
SQE54999.1|1061715_1063014_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.0	1.1e-17
SQE55000.1|1063225_1063936_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.9	6.0e-50
SQE55002.1|1063951_1064206_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
SQE55004.1|1064207_1064885_+	phosphoribosylformylglycinamidine synthetase I	NA	NA	NA	NA	NA
SQE55006.1|1064884_1067104_+	phosphoribosylformylglycinamidine synthase 2	NA	A6N228	Microbacterium_phage	41.4	2.4e-153
SQE55007.1|1067088_1068534_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.8	1.7e-54
SQE55009.1|1068545_1069589_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.0	3.0e-58
SQE55011.1|1069585_1070176_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.8	1.6e-24
>prophage 5
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1175458	1232403	2421598	transposase,tRNA	Streptococcus_phage(13.33%)	59	NA	NA
SQE55178.1|1175458_1176463_-|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQE55180.1|1176663_1177467_+	glutamate racemase	NA	NA	NA	NA	NA
SQE55182.1|1177480_1178824_+	Ribonuclease PH/Ham1 protein	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	35.3	2.6e-17
SQE55184.1|1178839_1179352_+	MJ0936 family phosphodiesterase	NA	NA	NA	NA	NA
SQE55186.1|1179363_1179849_+	CBS domain pair protein	NA	NA	NA	NA	NA
SQE55188.1|1179896_1180787_-	small conductance mechanosensitive ion channel protein	NA	NA	NA	NA	NA
SQE55190.1|1180873_1181629_-	enoyl-ACP reductase	NA	NA	NA	NA	NA
SQE55192.1|1182140_1182437_+|transposase	IS4 transposase	transposase	NA	NA	NA	NA
SQE55194.1|1182538_1182691_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55196.1|1182819_1183095_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
SQE55198.1|1183109_1183289_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SQE55200.1|1183320_1183698_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55201.1|1183849_1184125_-|transposase	IS116/IS110/IS902 family transposase	transposase	M1NSC9	Streptococcus_phage	75.6	5.0e-29
SQE55203.1|1184155_1184467_-|transposase	IS116/IS110/IS902 family transposase	transposase	M1NSC9	Streptococcus_phage	52.0	3.7e-20
SQE55205.1|1184559_1185174_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	30.5	1.7e-16
SQE55207.1|1185412_1186132_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	32.7	1.2e-18
SQE55209.1|1186133_1186976_+	cation ABC transporter permease	NA	NA	NA	NA	NA
SQE55211.1|1186972_1187914_+	adhesion lipoprotein	NA	NA	NA	NA	NA
SQE55213.1|1188133_1188397_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55215.1|1188591_1189032_+	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase 1	NA	NA	NA	NA	NA
SQE55216.1|1189058_1189802_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	34.8	4.6e-16
SQE55218.1|1189994_1191308_+	GTPase obg	NA	NA	NA	NA	NA
SQE55220.1|1191403_1192378_+	Ribonuclease Z	NA	NA	NA	NA	NA
SQE55222.1|1192394_1193186_+	short chain dehydrogenase/reductase family oxidoreductase	NA	NA	NA	NA	NA
SQE55223.1|1193259_1195569_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	32.1	3.3e-81
SQE55225.1|1195570_1196083_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.3	2.0e-31
SQE55227.1|1196389_1197511_+	tyrosine recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	30.1	5.9e-07
SQE55229.1|1197555_1199253_-	Arylsulfotransferase (ASST)	NA	NA	NA	NA	NA
SQE55231.1|1199493_1200519_-	Low specificity L-threonine aldolase	NA	NA	NA	NA	NA
SQE55233.1|1200746_1201607_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE55235.1|1201620_1201956_+	Nitrous oxide-stimulated promoter	NA	NA	NA	NA	NA
SQE55236.1|1201981_1202830_-	DegV family EDD domain-containing protein	NA	A0A0N9SI50	Staphylococcus_phage	36.2	7.5e-15
SQE55237.1|1202913_1204053_-	transcriptional regulator, PSR protein	NA	NA	NA	NA	NA
SQE55239.1|1204157_1205486_-	prephenate dehydratase	NA	NA	NA	NA	NA
SQE55241.1|1205499_1206771_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQE55242.1|1206790_1207897_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
SQE55244.1|1207874_1209041_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.7	2.5e-37
SQE55246.1|1209044_1210112_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
SQE55248.1|1210123_1211149_-	phospho-2-dehydro-3-deoxyheptonate aldolase	NA	NA	NA	NA	NA
SQE55250.1|1211178_1212045_-	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
SQE55252.1|1212406_1213174_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	30.0	1.3e-10
SQE55255.1|1213170_1214055_-	amino acid or sugar ABC transport system, permease protein	NA	NA	NA	NA	NA
SQE55256.1|1214138_1215152_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE55257.1|1215595_1217299_+	fibronectin-binding protein	NA	NA	NA	NA	NA
SQE55259.1|1217342_1218041_-	carbonic anhydrase	NA	NA	NA	NA	NA
SQE55261.1|1218136_1218772_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE55263.1|1218768_1219482_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQE55265.1|1219468_1220407_-	dihydroorotate oxidase B, catalytic subunit	NA	NA	NA	NA	NA
SQE55267.1|1220406_1221198_-	dihydroorotate dehydrogenase, electron transfer subunit	NA	NA	NA	NA	NA
SQE55269.1|1221266_1224449_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
SQE55271.1|1224441_1225530_-	carbamoyl-phosphate synthase small chain	NA	R4TGJ8	Halovirus	35.8	3.4e-60
SQE55272.1|1225529_1226816_-	Dihydroorotase	NA	NA	NA	NA	NA
SQE55274.1|1226827_1227754_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	33.9	3.0e-25
SQE55276.1|1227773_1228298_-	pyrimidine operon attenuation protein	NA	NA	NA	NA	NA
SQE55278.1|1228659_1229577_-	23S rRNA pseudouridine synthase D	NA	NA	NA	NA	NA
SQE55279.1|1229573_1230032_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SQE55281.1|1230031_1230736_-	CBS domain-containing protein	NA	NA	NA	NA	NA
SQE55283.1|1231000_1231804_-|transposase	transposase putative	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.3	5.2e-34
SQE55285.1|1232034_1232403_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
>prophage 6
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1280368	1320968	2421598	transposase,protease,tRNA	Bacillus_phage(22.22%)	38	NA	NA
SQE55368.1|1280368_1281187_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.8	1.7e-56
SQE55370.1|1281210_1281789_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE55371.1|1281863_1282133_-	membrane protein	NA	NA	NA	NA	NA
SQE55373.1|1282194_1283538_-	MATE efflux family protein	NA	NA	NA	NA	NA
SQE55375.1|1283581_1283902_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55377.1|1283947_1284265_-	thioredoxin	NA	NA	NA	NA	NA
SQE55379.1|1284266_1285229_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SQE55381.1|1285313_1285628_-	Predicted flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
SQE55383.1|1285655_1285787_-	Predicted flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
SQE55384.1|1285799_1286210_-	peptide deformylase	NA	A0A067XQZ3	Caulobacter_phage	44.6	2.9e-12
SQE55385.1|1286206_1286836_-	Phosphatase yihX	NA	NA	NA	NA	NA
SQE55387.1|1286877_1287309_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55389.1|1287398_1288028_-	FMN reductase	NA	NA	NA	NA	NA
SQE55390.1|1288232_1288451_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55392.1|1288701_1289142_-	transcriptional regulator, BadM/Rrf2 family	NA	NA	NA	NA	NA
SQE55393.1|1289251_1291063_-	neopullulanase	NA	NA	NA	NA	NA
SQE55395.1|1291067_1293497_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	47.4	1.2e-09
SQE55397.1|1293606_1295037_-	glycogen/starch synthase, ADP-glucose type	NA	NA	NA	NA	NA
SQE55398.1|1295044_1296190_-	glucose-1-phosphate adenylyltransferase, GlgD subunit	NA	NA	NA	NA	NA
SQE55400.1|1296179_1297322_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
SQE55402.1|1297373_1299260_-	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
SQE55403.1|1299734_1300541_-	DUF1803 domain protein	NA	NA	NA	NA	NA
SQE55405.1|1300617_1301547_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQE55406.1|1301635_1302403_-	pyruvate formate-lyase 1-activating enzyme	NA	NA	NA	NA	NA
SQE55408.1|1302556_1304839_-	formate acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.2	5.6e-166
SQE55410.1|1305122_1307570_-	DNA topoisomerase IV, A subunit	NA	G3M9Z5	Bacillus_virus	31.5	9.9e-92
SQE55412.1|1307587_1309630_-	DNA topoisomerase IV, B subunit	NA	G3M9Z3	Bacillus_virus	42.5	3.9e-118
SQE55413.1|1309729_1310146_-	CoA-binding protein	NA	NA	NA	NA	NA
SQE55414.1|1310299_1310944_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQE55415.1|1310972_1311848_-	aldose 1-epimerase	NA	NA	NA	NA	NA
SQE55416.1|1311861_1312647_-	GTP-sensing transcriptional pleiotropic repressor CodY	NA	NA	NA	NA	NA
SQE55417.1|1312663_1314055_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	30.3	1.1e-44
SQE55418.1|1314068_1314617_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
SQE55419.1|1314965_1316270_-|tRNA	tRNA:m(5)U-54 methyltransferase	tRNA	NA	NA	NA	NA
SQE55420.1|1316284_1318363_-	DNA topoisomerase 1	NA	A0A1V0SCS0	Indivirus	36.6	1.7e-100
SQE55421.1|1318552_1319440_-	DNA protecting protein DprA	NA	NA	NA	NA	NA
SQE55422.1|1319547_1320366_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.8	1.7e-56
SQE55423.1|1320389_1320968_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
>prophage 7
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1385648	1437548	2421598	transposase,tRNA	Streptococcus_phage(22.22%)	57	NA	NA
SQE55493.1|1385648_1386182_-|tRNA	Cysteinyl-tRNA synthetase related protein	tRNA	NA	NA	NA	NA
SQE55495.1|1386272_1387502_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
SQE55497.1|1387494_1388286_-	recX family protein	NA	NA	NA	NA	NA
SQE55500.1|1388415_1389786_+	23S rRNA (uracil-5-)-methyltransferase RumA	NA	A0A2K5B251	Erysipelothrix_phage	35.6	6.1e-75
SQE55502.1|1389870_1390689_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.1e-55
SQE55504.1|1390712_1391291_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE55506.1|1391373_1392006_-	chloramphenicol O-acetyltransferase	NA	NA	NA	NA	NA
SQE55508.1|1392017_1396358_-	DNA polymerase III, alpha subunit, Gram-positive type	NA	A0A0A8WJ41	Clostridium_phage	39.0	1.4e-19
SQE55510.1|1396454_1398050_-|tRNA	prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQE55512.1|1398066_1399335_-	M50 family peptidase	NA	NA	NA	NA	NA
SQE55514.1|1399495_1399939_-	Archaea bacterial proteins of uncharacterised function	NA	NA	NA	NA	NA
SQE55516.1|1400054_1400861_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SQE55518.1|1400861_1401659_-	undecaprenyl diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	44.5	3.7e-24
SQE55520.1|1401798_1403613_-	sulfatase family protein	NA	NA	NA	NA	NA
SQE55521.1|1403627_1404560_-	Glycosyltransferases involved in cell wall biogenesis	NA	V5USA4	Oenococcus_phage	48.4	3.6e-79
SQE55524.1|1404719_1405889_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE55528.1|1405955_1406639_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55530.1|1407069_1409994_-	GBS Bsp-like repeat	NA	NA	NA	NA	NA
SQE55532.1|1410142_1410700_-	ribosome recycling factor	NA	NA	NA	NA	NA
SQE55534.1|1410863_1411586_-	UMP kinase	NA	NA	NA	NA	NA
SQE55536.1|1411720_1412602_-	elongation factor EF1B	NA	NA	NA	NA	NA
SQE55538.1|1412722_1413514_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
SQE55540.1|1414035_1415421_-	Uncharacterised protein family (UPF0236)	NA	NA	NA	NA	NA
SQE55542.1|1415471_1415657_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55544.1|1415646_1415946_-	DNA ligase	NA	NA	NA	NA	NA
SQE55547.1|1415958_1416213_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55549.1|1416349_1416922_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55551.1|1417001_1417625_-	CO dehydrogenase maturation factor	NA	NA	NA	NA	NA
SQE55553.1|1417631_1417796_-	chromosome segregation ATPase	NA	NA	NA	NA	NA
SQE55555.1|1417814_1418480_-	Protein of uncharacterised function (DUF2786)	NA	NA	NA	NA	NA
SQE55557.1|1418469_1418715_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55559.1|1418711_1418882_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55561.1|1418874_1418964_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55563.1|1418960_1419491_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55565.1|1419768_1420059_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55567.1|1420196_1420547_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55569.1|1421138_1422413_+|transposase	IS204/IS1001/IS1096/IS1165 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	8.6e-55
SQE55571.1|1422649_1423795_-	LPXTG cell wall anchor domain	NA	NA	NA	NA	NA
SQE55573.1|1423995_1424748_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55575.1|1424716_1425277_-	LPXTG-domain-containing protein cell wall anchor domain protein	NA	NA	NA	NA	NA
SQE55577.1|1425624_1425954_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55579.1|1426501_1427452_+	biotin synthetase	NA	NA	NA	NA	NA
SQE55582.1|1427451_1428117_+	dethiobiotin synthetase	NA	NA	NA	NA	NA
SQE55584.1|1428109_1428673_+	biotin transporter bioY	NA	NA	NA	NA	NA
SQE55586.1|1428976_1430251_+|transposase	IS204/IS1001/IS1096/IS1165 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.6	2.0e-56
SQE55588.1|1430830_1431196_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55590.1|1431213_1431444_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55592.1|1431591_1431960_+	Predicted transcriptional regulators	NA	NA	NA	NA	NA
SQE55594.1|1431997_1432429_-	response regulator	NA	NA	NA	NA	NA
SQE55596.1|1432465_1433125_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55598.1|1433140_1433986_-	ABC transporter	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	5.4e-21
SQE55600.1|1433975_1434362_-	transcriptional repressor of the arabinose operon	NA	NA	NA	NA	NA
SQE55603.1|1434844_1435318_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55605.1|1435428_1435623_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55607.1|1435603_1435954_+	IS66 Orf2-like protein	NA	NA	NA	NA	NA
SQE55609.1|1436008_1436236_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
SQE55611.1|1436192_1437548_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	26.5	3.6e-35
>prophage 8
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1445096	1458219	2421598	protease	Escherichia_phage(42.86%)	12	NA	NA
SQE55619.1|1445096_1446302_-	ABC-type polysaccharide/polyol phosphate transport system, ATPase component	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	6.5e-12
SQE55621.1|1446313_1447120_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE55623.1|1447313_1448249_-	family 2 glycosyl transferase	NA	NA	NA	NA	NA
SQE55625.1|1448274_1451274_-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA	A0A223LFZ0	Bacillus_phage	28.6	1.6e-11
SQE55627.1|1451319_1452168_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	4.5e-36
SQE55629.1|1452292_1453321_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.7	1.2e-70
SQE55631.1|1453331_1453904_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.8	3.4e-43
SQE55633.1|1453915_1454785_-	Glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.7	6.2e-105
SQE55635.1|1454888_1455596_-	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase	NA	NA	NA	NA	NA
SQE55637.1|1455598_1456426_-	glycosyl transferase	NA	NA	NA	NA	NA
SQE55639.1|1456416_1457190_-	Predicted glycosyltransferases	NA	NA	NA	NA	NA
SQE55641.1|1457199_1458219_-|protease	glycoprotease/Kae1 family metallohydrolase	protease	A0A0R6PI74	Moraxella_phage	39.6	2.1e-59
>prophage 9
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1545636	1555159	2421598		Streptococcus_phage(50.0%)	9	NA	NA
SQE55883.1|1545636_1546899_+	flavoprotein	NA	A0A2H4PQX1	Staphylococcus_phage	57.3	5.6e-22
SQE55885.1|1546938_1547430_-	YbaK/ebsC protein	NA	NA	NA	NA	NA
SQE55887.1|1547422_1548181_-	3-dehydroquinate dehydratase, type I	NA	W6LP76	Streptococcus_phage	30.5	8.2e-21
SQE55889.1|1548199_1549366_-	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	52.1	5.0e-102
SQE55891.1|1549663_1551715_+	sulfatase	NA	W6LM83	Streptococcus_phage	58.1	2.7e-220
SQE55892.1|1551845_1552565_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55893.1|1552554_1552959_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE55895.1|1552997_1554443_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.4	3.6e-33
SQE55897.1|1554439_1555159_-	two-component system response regulator receiver protein	NA	W8CYM9	Bacillus_phage	35.6	1.2e-34
>prophage 10
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1794058	1839322	2421598	transposase,integrase,tRNA	Bacillus_phage(15.38%)	39	1790576:1790590	1829735:1829749
1790576:1790590	attL	AGAAGCCATCATCAA	NA	NA	NA	NA
SQE56390.1|1794058_1795201_+|integrase	bacteriophage integrase	integrase	A0A1S5S7K9	Streptococcus_phage	36.9	9.4e-61
SQE56391.1|1795299_1796691_-	FeS assembly protein SufB	NA	NA	NA	NA	NA
SQE56392.1|1796696_1797170_-	SUF system FeS assembly protein, NifU family	NA	A0A2H4N7M4	Lake_Baikal_phage	31.1	4.1e-10
SQE56393.1|1797156_1798398_-	class V aminotransferase	NA	Q2XUY6	environmental_halophage	46.3	1.0e-108
SQE56394.1|1798397_1799690_-	FeS assembly protein SufD	NA	NA	NA	NA	NA
SQE56396.1|1799704_1800478_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.5	1.6e-08
SQE56397.1|1803074_1803344_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQE56398.1|1803723_1804014_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
SQE56399.1|1804100_1804679_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE56400.1|1804702_1805521_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.9e-55
SQE56402.1|1805596_1806757_-	permease	NA	NA	NA	NA	NA
SQE56404.1|1806769_1807123_-	PTS family glucitol/sorbitol porter component IIA	NA	NA	NA	NA	NA
SQE56406.1|1807238_1808258_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQE56408.1|1808273_1808624_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56410.1|1808637_1808799_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56413.1|1809013_1810246_+	transporter, dicarboxylate/amino acid:cation symporter family protein	NA	NA	NA	NA	NA
SQE56416.1|1810728_1812579_+	Transposase	NA	NA	NA	NA	NA
SQE56419.1|1812740_1813169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56421.1|1813271_1815980_-	potassium/sodium efflux P-type ATPase, fungal-type	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.8	2.3e-73
SQE56423.1|1816890_1818900_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	37.5	3.0e-94
SQE56425.1|1819342_1819603_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56426.1|1819620_1820448_+	MutT/NUDIX family protein	NA	A0A0E3JJF3	Streptomyces_phage	36.5	1.9e-15
SQE56428.1|1820546_1821488_-|transposase	IS200/IS605 family transposase	transposase	A0A288TXV8	Enterococcus_phage	38.8	1.7e-52
SQE56429.1|1821893_1822832_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.5	3.5e-21
SQE56431.1|1822847_1823900_-	oligopeptide/dipeptide ABC transporter, ATP-binding protein domain protein	NA	G9BWD6	Planktothrix_phage	28.8	2.1e-19
SQE56432.1|1823906_1824947_-	oligopeptide ABC transporter, permease protein OppC family protein	NA	NA	NA	NA	NA
SQE56434.1|1824947_1825889_-	oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein	NA	NA	NA	NA	NA
SQE56435.1|1825984_1826323_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56436.1|1826388_1828056_-	oligopeptide ABC transporter, binding protein	NA	NA	NA	NA	NA
SQE56438.1|1828539_1830189_-	oligopeptide ABC transporter, binding protein	NA	NA	NA	NA	NA
1829735:1829749	attR	TTGATGATGGCTTCT	NA	NA	NA	NA
SQE56440.1|1830632_1831691_-	radical SAM superfamily protein	NA	NA	NA	NA	NA
SQE56441.1|1831759_1833019_-	MATE efflux family protein	NA	NA	NA	NA	NA
SQE56442.1|1833133_1835551_-	cell division protein FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.4	6.8e-85
SQE56444.1|1835702_1835933_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56446.1|1836130_1836391_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56447.1|1836793_1836982_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56449.1|1836978_1837581_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56450.1|1837901_1838720_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.1e-55
SQE56452.1|1838743_1839322_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
>prophage 11
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1923396	1982529	2421598	capsid,holin,portal,tail,tRNA,terminase,transposase,protease	Streptococcus_phage(36.0%)	61	NA	NA
SQE56573.1|1923396_1924044_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQE56574.1|1924125_1924905_-	phosphotransferase	NA	NA	NA	NA	NA
SQE56576.1|1925008_1925587_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
SQE56578.1|1925786_1926914_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQE56579.1|1927123_1928335_-	Predicted ABC-type exoprotein transport system, permease component	NA	NA	NA	NA	NA
SQE56581.1|1928331_1929066_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.2	2.5e-27
SQE56583.1|1929188_1931075_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	32.8	1.5e-63
SQE56584.1|1931071_1932631_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	29.1	2.3e-49
SQE56586.1|1932630_1932798_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA	NA
SQE56588.1|1932801_1933452_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQE56590.1|1933643_1933919_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56592.1|1933971_1934184_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56594.1|1934253_1935906_-	phosphoenolpyruvate carboxykinase	NA	NA	NA	NA	NA
SQE56595.1|1936224_1936755_+	Predicted integral membrane protein	NA	NA	NA	NA	NA
SQE56597.1|1936978_1937425_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
SQE56599.1|1937429_1937678_-	RelA/SpoT family protein	NA	NA	NA	NA	NA
SQE56601.1|1937674_1939645_-	RelA/SpoT family protein	NA	U5J9N6	Bacillus_phage	39.1	4.8e-12
SQE56603.1|1939813_1940314_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56605.1|1940323_1941085_-	16S ribosomal RNA methyltransferase RsmE	NA	NA	NA	NA	NA
SQE56607.1|1941084_1942035_-	[LSU ribosomal protein L11P]-lysine N-methyltransferase	NA	NA	NA	NA	NA
SQE56609.1|1942047_1942503_-	Protein of uncharacterised function (DUF3013).	NA	NA	NA	NA	NA
SQE56611.1|1942675_1943950_+	recombination factor protein RarA	NA	A0A127AWE7	Bacillus_phage	49.5	1.5e-107
SQE56613.1|1944353_1944632_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56614.1|1944702_1945179_+	universal stress protein UspA	NA	NA	NA	NA	NA
SQE56616.1|1945258_1946605_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
SQE56618.1|1946709_1948089_-	rRNA (cytosine-C(5)-)-methyltransferase	NA	NA	NA	NA	NA
SQE56620.1|1948299_1948863_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.2	3.6e-13
SQE56622.1|1948914_1949439_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE56623.1|1949431_1950283_-	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQE56625.1|1950375_1951194_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.1e-55
SQE56626.1|1951217_1951796_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE56628.1|1951817_1952540_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
SQE56630.1|1953058_1954630_+	His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region	NA	NA	NA	NA	NA
SQE56632.1|1954644_1955385_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.1	6.5e-31
SQE56634.1|1955644_1956988_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
SQE56636.1|1957379_1957832_-	low molecular weight protein tyrosine phosphatase	NA	NA	NA	NA	NA
SQE56638.1|1957841_1958396_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQE56640.1|1958407_1959397_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.6	2.0e-06
SQE56642.1|1959427_1960027_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
SQE56644.1|1960142_1960622_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SQE56646.1|1960997_1961804_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A0YV41	Streptococcus_phage	59.5	6.2e-67
SQE56648.1|1961800_1962190_-|holin	holin	holin	A0A097BY69	Enterococcus_phage	62.0	4.9e-38
SQE56650.1|1962248_1962407_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56652.1|1962406_1962628_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56653.1|1962624_1964022_-	Uncharacterised protein	NA	A0A0A0YV37	Streptococcus_phage	39.1	4.1e-10
SQE56655.1|1964030_1967525_-	Uncharacterised protein	NA	Q2I7P5	Streptococcus_phage	38.0	1.3e-76
SQE56657.1|1967528_1968959_-	Phage-related protein	NA	Q2I7P7	Streptococcus_phage	52.1	2.2e-30
SQE56659.1|1968967_1973299_-|tail	phage tail tape measure protein, TP901 family, core region	tail	J7KDT4	Streptococcus_phage	38.2	1.4e-112
SQE56661.1|1973498_1973882_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56663.1|1973916_1974105_-|tail	phage major tail protein, putative	tail	NA	NA	NA	NA
SQE56664.1|1974118_1974694_-|tail	major tail protein	tail	A3F651	Streptococcus_phage	42.4	5.4e-25
SQE56666.1|1974713_1975097_-	gp10 family protein	NA	A0A059T681	Listeria_phage	42.0	3.6e-17
SQE56668.1|1975093_1975513_-	phage protein, HK97 gp10 family	NA	A8ATA2	Listeria_phage	32.6	1.2e-13
SQE56670.1|1975512_1975875_-	gp8	NA	NA	NA	NA	NA
SQE56672.1|1975858_1976146_-	Uncharacterised protein	NA	A0A1S5SF81	Streptococcus_phage	50.0	3.9e-16
SQE56674.1|1976231_1977347_-|capsid	Phage capsid family.	capsid	A0A1W6JPL4	Staphylococcus_phage	61.9	4.5e-124
SQE56676.1|1977372_1978107_-|protease	Clp protease	protease	A0A290FZN4	Caldibacillus_phage	51.7	4.5e-48
SQE56677.1|1978090_1979245_-|portal	phage portal protein	portal	A0A1S5SFG8	Streptococcus_phage	42.6	5.7e-82
SQE56679.1|1979260_1980907_-|terminase	Phage terminase-like protein, large subunit	terminase	A0A1S5SF58	Streptococcus_phage	66.1	1.6e-218
SQE56681.1|1980903_1981266_-	Uncharacterised protein	NA	A0A2H4JAH7	uncultured_Caudovirales_phage	62.7	2.1e-27
SQE56683.1|1982052_1982529_-	phage protein	NA	A0A288WG73	Bacillus_phage	47.2	2.4e-26
>prophage 12
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	1986532	1996321	2421598		uncultured_Caudovirales_phage(37.5%)	15	NA	NA
SQE56707.1|1986532_1988392_-	DNA primase	NA	A0A2H4J1M0	uncultured_Caudovirales_phage	29.3	3.1e-61
SQE56708.1|1988430_1989993_-	Uncharacterised protein	NA	A0A2H4J041	uncultured_Caudovirales_phage	25.1	3.3e-40
SQE56724.1|1990009_1990525_-	Uncharacterised protein	NA	A0A2P0ZLB9	Lactobacillus_phage	35.7	5.9e-23
SQE56726.1|1990572_1991535_-	Uncharacterised protein	NA	A0A0A1ENB5	Lactobacillus_phage	56.6	9.0e-73
SQE56727.1|1991554_1991734_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56729.1|1991746_1992655_-	gp47	NA	A0A2H4JA52	uncultured_Caudovirales_phage	28.0	7.3e-16
SQE56730.1|1992654_1993902_-	DNA helicase	NA	A0A1B1P7L4	Bacillus_phage	28.3	3.5e-29
SQE56731.1|1993843_1994137_-	VRR-NUC domain	NA	M5A970	Nitratiruptor_phage	48.4	1.6e-12
SQE56732.1|1994203_1994467_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56734.1|1994484_1994817_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56735.1|1994806_1995016_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56737.1|1995031_1995154_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE56739.1|1995150_1995399_-	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
SQE56740.1|1995412_1995604_-	phage DNA-binding protein	NA	NA	NA	NA	NA
SQE56742.1|1995898_1996321_+	Cro/CI family phage transcriptional regulator	NA	A0A0M4QX29	Bacillus_phage	44.7	4.3e-27
>prophage 13
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	2272436	2307494	2421598	transposase,tRNA	Bacillus_phage(37.5%)	39	NA	NA
SQE57227.1|2272436_2272667_-|tRNA	bacterial seryl-tRNA synthetase related protein	tRNA	A0A223LEC3	Bacillus_phage	48.5	3.2e-13
SQE57229.1|2272712_2273546_-	ParB-like partition protein	NA	S5VSZ7	Leptospira_phage	30.2	1.7e-06
SQE57231.1|2273575_2274541_-	plasmid recombinase enzyme Pre	NA	NA	NA	NA	NA
SQE57233.1|2275065_2276091_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57235.1|2276396_2276852_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57237.1|2276803_2277229_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SQE57239.1|2277323_2277836_-	RNA polymerase sigma factor SigB	NA	NA	NA	NA	NA
SQE57241.1|2278548_2280468_-	tetracycline resistance protein TetP	NA	A0A1B0RXH7	Streptococcus_phage	98.9	0.0e+00
SQE57243.1|2281291_2283142_+	Transposase	NA	NA	NA	NA	NA
SQE57245.1|2283303_2283678_-	Uncharacterised protein	NA	D0R0F4	Streptococcus_phage	96.8	6.6e-64
SQE57247.1|2283658_2283919_-	Phosphotransferase system, galactitol-specific IIC component	NA	NA	NA	NA	NA
SQE57250.1|2283937_2284216_-	Phosphotransferase system, galactitol-specific IIB component	NA	NA	NA	NA	NA
SQE57253.1|2284290_2284692_-	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA	NA	NA	NA	NA
SQE57255.1|2284695_2285319_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
SQE57258.1|2285329_2287357_-	BglG family transcriptional antiterminator	NA	NA	NA	NA	NA
SQE57259.1|2288121_2288940_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.9e-55
SQE57261.1|2288963_2289542_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE57263.1|2289700_2290453_-	Class II Aldolase and Adducin N-terminal domain protein	NA	NA	NA	NA	NA
SQE57265.1|2290465_2290738_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57267.1|2290756_2292118_-	PTS system galactitol-specific transporter subunit IIC	NA	NA	NA	NA	NA
SQE57268.1|2292127_2292427_-	PTS system galactitol-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQE57269.1|2292442_2292904_-	PTS system galactitol transporter subunit IIA	NA	NA	NA	NA	NA
SQE57270.1|2293110_2293872_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
SQE57271.1|2293868_2294822_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
SQE57272.1|2295231_2295585_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57274.1|2295666_2296416_+	Transposase DDE domain	NA	NA	NA	NA	NA
SQE57276.1|2296784_2297456_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
SQE57279.1|2297546_2298365_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.8	1.7e-56
SQE57281.1|2298388_2298967_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE57282.1|2299042_2299672_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57284.1|2299680_2300334_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
SQE57286.1|2300361_2300640_-	cell wall biosynthesis protein ScdA	NA	NA	NA	NA	NA
SQE57287.1|2300655_2300886_-	Copper chaperone	NA	NA	NA	NA	NA
SQE57289.1|2300962_2302813_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.3	2.0e-100
SQE57290.1|2302915_2303701_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
SQE57292.1|2304496_2305801_+	Inner membrane protein yhjX	NA	NA	NA	NA	NA
SQE57294.1|2305834_2306812_+	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	28.8	2.6e-27
SQE57295.1|2306953_2307139_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57297.1|2307140_2307494_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 14
LS483306	Enterococcus cecorum strain NCTC12421 genome assembly, chromosome: 1	2421598	2326920	2391413	2421598	transposase,tRNA	Bacillus_phage(26.67%)	57	NA	NA
SQE57342.1|2326920_2327739_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.8	7.7e-57
SQE57344.1|2327762_2328341_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE57346.1|2328422_2329058_+	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases	NA	NA	NA	NA	NA
SQE57347.1|2329102_2329990_-	glucokinase	NA	NA	NA	NA	NA
SQE57348.1|2330004_2330922_-	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
SQE57349.1|2330937_2331627_-	N-acylglucosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
SQE57350.1|2331658_2332762_-	oxidoreductase family, NAD-binding Rossmann fold protein	NA	NA	NA	NA	NA
SQE57351.1|2332788_2334879_-	Sialidase B precursor	NA	NA	NA	NA	NA
SQE57353.1|2334898_2335732_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE57354.1|2335731_2336616_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE57357.1|2336686_2338036_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
SQE57359.1|2338057_2338510_-	Toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA	NA
SQE57361.1|2338517_2339315_-	RpiR family phosphosugar-binding transcriptional regulator	NA	NA	NA	NA	NA
SQE57363.1|2339674_2340943_-	NlpC/P60 family lipoprotein	NA	B5LJD6	Mycobacterium_phage	51.0	3.7e-18
SQE57365.1|2341104_2341605_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SQE57368.1|2341604_2342465_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
SQE57370.1|2342637_2343216_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
SQE57372.1|2343239_2344058_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	45.4	1.1e-55
SQE57374.1|2344144_2344792_-	thiamin pyrophosphokinase family protein	NA	NA	NA	NA	NA
SQE57377.1|2344792_2345443_-	Ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SQE57379.1|2345470_2346352_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
SQE57382.1|2352861_2353551_+	response regulator	NA	W8CYM9	Bacillus_phage	38.5	4.6e-39
SQE57384.1|2353540_2354719_+	histidine kinase	NA	W8CYF6	Bacillus_phage	27.5	1.6e-26
SQE57386.1|2355111_2356380_+|tRNA	seryl-tRNA synthetase 2	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.5	1.5e-91
SQE57388.1|2356744_2357959_-	Predicted flavoprotein	NA	A0A2P0ZL82	Lactobacillus_phage	56.7	7.1e-59
SQE57391.1|2357977_2358583_-	Predicted flavoprotein	NA	A0A2P0ZL77	Lactobacillus_phage	54.7	6.1e-59
SQE57393.1|2358603_2359539_-	putative thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
SQE57394.1|2359827_2361279_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
SQE57395.1|2361507_2362992_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	43.1	1.1e-101
SQE57397.1|2363273_2364452_-	enterobactin exporter EntS	NA	NA	NA	NA	NA
SQE57400.1|2364989_2365586_-	ABC-type multidrug transport system, ATPase and permease components	NA	A0A1V0SJ29	Klosneuvirus	30.4	5.3e-15
SQE57402.1|2365601_2366558_-	ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components	NA	NA	NA	NA	NA
SQE57404.1|2366558_2367413_-	thiol reductant ABC exporter, CydC subunit	NA	F2Y1V5	Organic_Lake_phycodnavirus	24.2	6.6e-11
SQE57406.1|2367452_2368124_-	ABC-type siderophore export system, fused ATPase and permease components	NA	NA	NA	NA	NA
SQE57408.1|2368322_2368538_-	Bicarbonate transport ATP-binding protein CmpD	NA	NA	NA	NA	NA
SQE57409.1|2368619_2369483_-	transcriptional activator, Rgg/GadR/MutR family, C- domain-containing protein	NA	NA	NA	NA	NA
SQE57411.1|2369537_2370401_-	transcriptional activator, Rgg/GadR/MutR family domain-containing protein	NA	NA	NA	NA	NA
SQE57413.1|2370878_2371577_-	Integral membrane protein	NA	NA	NA	NA	NA
SQE57415.1|2371674_2372775_-	translation-associated GTPase	NA	NA	NA	NA	NA
SQE57417.1|2372777_2372966_-	translation-associated GTPase	NA	NA	NA	NA	NA
SQE57419.1|2373045_2373921_-	ParB-like partition protein	NA	S5VTK0	Leptospira_phage	34.6	1.3e-17
SQE57421.1|2373910_2374675_-	sporulation initiation inhibitor protein soj	NA	Q8JL10	Natrialba_phage	32.7	2.4e-28
SQE57424.1|2374693_2375410_-	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
SQE57426.1|2376151_2376460_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
SQE57429.1|2376487_2377009_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57431.1|2377198_2377855_-	Predicted HD superfamily hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.6	1.6e-12
SQE57433.1|2377937_2379440_-	glycerol kinase	NA	NA	NA	NA	NA
SQE57434.1|2379674_2380718_+	diguanylate cyclase (GGDEF) domain-containing protein	NA	NA	NA	NA	NA
SQE57436.1|2380772_2382971_+	glycosyltransferase	NA	NA	NA	NA	NA
SQE57438.1|2383029_2383917_-	Malolactic regulator	NA	NA	NA	NA	NA
SQE57439.1|2384032_2385670_+	malic enzyme, NAD binding domain protein	NA	NA	NA	NA	NA
SQE57441.1|2385679_2386984_+	CCS family citrate:sodium (Na+) symporter	NA	NA	NA	NA	NA
SQE57442.1|2387065_2388049_-	oxidoreductase	NA	NA	NA	NA	NA
SQE57443.1|2388518_2389070_-	Transcriptional regulator	NA	NA	NA	NA	NA
SQE57444.1|2389152_2389377_-	Protein of uncharacterised function (DUF2922)	NA	NA	NA	NA	NA
SQE57446.1|2389421_2389631_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE57447.1|2390138_2391413_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.1	3.7e-42
