The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	162827	194255	2472120	protease,holin,transposase	Streptococcus_phage(33.33%)	32	NA	NA
SQE46440.1|162827_163658_+|protease	putative membrane bound protease	protease	NA	NA	NA	NA
SQE46441.1|163713_164580_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
SQE46442.1|164795_165251_+	immunodominant antigen B	NA	NA	NA	NA	NA
SQE46443.1|165426_165894_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE46444.1|165904_166111_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE46445.1|166296_167739_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
SQE46446.1|167896_168601_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE46447.1|168656_169133_+	acetyltransferase	NA	NA	NA	NA	NA
SQE46448.1|169666_170737_+	membrane protein	NA	NA	NA	NA	NA
SQE46449.1|170763_171504_+|protease	caax amino protease family	protease	NA	NA	NA	NA
SQE46450.1|171582_172839_-	immunoglobulin G binding protein A spa1	NA	NA	NA	NA	NA
SQE46451.1|173496_174249_+|protease	caax amino protease family	protease	NA	NA	NA	NA
SQE46452.1|174547_175291_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE46453.1|175516_176224_+	Purine nucleoside phosphorylase	NA	NA	NA	NA	NA
SQE46454.1|176237_177596_+	Permease	NA	NA	NA	NA	NA
SQE46455.1|177608_178271_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
SQE46456.1|178300_179476_+	phosphopentomutase	NA	NA	NA	NA	NA
SQE46457.1|179631_180498_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
SQE46458.1|180747_181947_+|transposase	transposase for ISSps2	transposase	A0A1X9I619	Streptococcus_phage	37.9	7.8e-66
SQE46459.1|182285_183014_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
SQE46460.1|183173_183671_+	integral membrane protein	NA	NA	NA	NA	NA
SQE46461.1|183854_184358_+	integral membrane protein	NA	NA	NA	NA	NA
SQE46462.1|184510_185980_+	NAD-dependent epimerase/dehydratase, putative	NA	NA	NA	NA	NA
SQE46463.1|186027_186510_+	Tryptophan-rich transmembrane signalling protein	NA	NA	NA	NA	NA
SQE46464.1|186530_187922_+	deoxyribodipyrimidine photo-lyase	NA	F2Y1K1	Organic_Lake_phycodnavirus	29.1	5.0e-40
SQE46465.1|187933_188542_-	tellurite resistance protein TehB	NA	NA	NA	NA	NA
SQE46466.1|188662_189859_+	FAD-dependent pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
SQE46467.1|190032_190236_+	Cro/CI family transcriptional regulator	NA	NA	NA	NA	NA
SQE46468.1|190232_190955_+	membrane protein	NA	NA	NA	NA	NA
SQE46469.1|191482_192664_+|holin	glycine betaine/carnitine/choline ABC transporter	holin	Q6GZ03	Mycoplasma_phage	41.0	8.3e-20
SQE46470.1|192660_193296_+	opuCB protein	NA	NA	NA	NA	NA
SQE46471.1|193313_194255_+|holin	glycine betaine/carnitine/choline ABC transporter opuCC	holin	NA	NA	NA	NA
>prophage 2
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	944041	1049367	2472120	integrase,protease,holin,transposase,tail,tRNA	Staphylococcus_phage(86.49%)	77	962657:962672	1042439:1042454
SQE47177.1|944041_944560_+|protease	intracellular protease amidase	protease	NA	NA	NA	NA
SQE47178.1|944757_945957_-|transposase	transposase for ISSps2	transposase	A0A1X9I619	Streptococcus_phage	37.9	7.8e-66
SQE47179.1|946290_948036_-	pyruvate oxidase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	27.7	3.4e-38
SQE47180.1|948203_949010_+	putative transglycosylase	NA	NA	NA	NA	NA
SQE47181.1|949098_949905_+	regulatory protein RecX	NA	NA	NA	NA	NA
SQE47182.1|949894_950206_+	transcription regulator	NA	NA	NA	NA	NA
SQE47183.1|950220_951747_+	teichoic acid export ATP-binding protein TagH	NA	NA	NA	NA	NA
SQE47184.1|951755_952526_+	membrane protein	NA	NA	NA	NA	NA
SQE47185.1|952672_953650_-	membrane bound metal dependent hydrolase	NA	NA	NA	NA	NA
SQE47186.1|953738_954788_+	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	31.9	4.9e-24
SQE47187.1|954834_955389_+|tRNA	cysteinyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQE47188.1|955509_957246_+	ABC-type multidrug protein lipid transport system ATPase component	NA	W8CYL7	Bacillus_phage	30.6	3.2e-60
SQE47189.1|957410_958991_+	glutamate synthase	NA	NA	NA	NA	NA
SQE47190.1|959050_960148_-	membrane protein	NA	NA	NA	NA	NA
SQE47191.1|960489_961791_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
SQE47192.1|961871_962330_+	putative peroxiredoxin	NA	NA	NA	NA	NA
SQE47193.1|962335_963286_+	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
962657:962672	attL	TTAGATGATTATAAAG	NA	NA	NA	NA
SQE47194.1|963370_963832_+	peroxide-responsive repressor	NA	NA	NA	NA	NA
SQE47195.1|972107_973166_+	Membrane protein	NA	NA	NA	NA	NA
SQE47196.1|973306_974764_+	glutamine-binding periplasmic protein	NA	NA	NA	NA	NA
SQE47197.1|974756_975479_+	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.5	6.8e-33
SQE47198.1|975644_976772_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
SQE47199.1|976774_977245_+	TrmH family RNA methyltransferase	NA	NA	NA	NA	NA
SQE47200.1|977260_978430_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
SQE47201.1|978447_979047_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
SQE47202.1|979065_979221_+	putative uncharcterised protein	NA	NA	NA	NA	NA
SQE47203.1|979376_979781_+	membrane protein	NA	NA	NA	NA	NA
SQE47204.1|979938_981324_+	class II fumarate hydratase	NA	NA	NA	NA	NA
SQE47205.1|981345_982872_+	putative exopolyphosphatase	NA	NA	NA	NA	NA
SQE47206.1|982966_985129_+	polyphosphate kinase	NA	NA	NA	NA	NA
SQE47207.1|985169_986000_-	RluD subfamily ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SQE47208.1|986178_987300_+	signal transduction histidine kinase	NA	NA	NA	NA	NA
SQE47209.1|987300_987927_+	two-component response regulator	NA	NA	NA	NA	NA
SQE47210.1|988339_991813_+	fibronectin-binding protein A	NA	NA	NA	NA	NA
SQE47211.1|991891_992761_-	cation efflux family protein	NA	NA	NA	NA	NA
SQE47212.1|993060_995040_+	fibronectin-binding protein FnbB	NA	NA	NA	NA	NA
SQE47213.1|995447_996005_+	type-I signal peptidase SipB	NA	NA	NA	NA	NA
SQE47214.1|996198_997197_+	proton/sodium-glutamate symport protein	NA	NA	NA	NA	NA
SQE47215.1|997297_997993_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47216.1|998248_998425_+	phage protein	NA	A0A0N9SK66	Staphylococcus_phage	37.9	6.5e-06
SQE47217.1|998706_998937_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47218.1|999171_1000458_+	proton/sodium-glutamate symport protein	NA	NA	NA	NA	NA
SQE47219.1|1000502_1000922_-	Uncharacterised protein	NA	A0A1Q1PVU5	Staphylococcus_phage	37.7	2.3e-17
SQE47220.1|1000924_1001434_-	Uncharacterised protein	NA	A0A1Q1PVV5	Staphylococcus_phage	50.0	1.3e-38
SQE47221.1|1001655_1003179_-	phage amidase	NA	A0A0N9SGX6	Staphylococcus_phage	42.5	1.1e-104
SQE47222.1|1003234_1003630_-	phage protein	NA	A0A0H4IPB8	Staphylococcus_phage	52.3	9.5e-37
SQE47223.1|1003634_1006085_-	phage protein	NA	A0A0H3U4S3	Staphylococcus_phage	40.1	2.7e-20
SQE47224.1|1006109_1006430_-|holin	holin	holin	A0A1D6Z272	Staphylococcus_phage	39.3	5.7e-08
SQE47225.1|1006607_1007009_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47226.1|1007066_1009802_-	phage protein	NA	A0A0N9SHX2	Staphylococcus_phage	58.5	7.5e-274
SQE47227.1|1009842_1010019_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47228.1|1010034_1010385_-	phage protein	NA	A0A0N9SK58	Staphylococcus_phage	46.5	1.8e-15
SQE47229.1|1010398_1017397_-	phage protein	NA	A0A0N9RTX0	Staphylococcus_phage	38.5	0.0e+00
SQE47230.1|1017447_1019526_-	phage protein	NA	A0A0N9SGW2	Staphylococcus_phage	55.7	8.1e-220
SQE47231.1|1019546_1028093_-|tail	phage tail tape measure protein	tail	A0A0N9S894	Staphylococcus_phage	49.0	0.0e+00
SQE47232.1|1028189_1029209_-|integrase	phage integrase	integrase	A0A0N9SIX3	Staphylococcus_phage	75.3	1.6e-152
SQE47233.1|1029229_1029709_-	phage protein	NA	A0A0N9RRK6	Staphylococcus_phage	39.6	4.1e-26
SQE47234.1|1029721_1030264_-	phage protein	NA	A0A0N9SK55	Staphylococcus_phage	59.8	4.3e-56
SQE47235.1|1030332_1030737_-|tail	phage major tail, phi13 family protein	tail	NA	NA	NA	NA
SQE47236.1|1030745_1031477_-	phage protein	NA	A0A0N7GFG4	Staphylococcus_phage	54.0	2.9e-63
SQE47237.1|1031511_1032321_-	phage protein	NA	A0A0N9RZR7	Staphylococcus_phage	38.8	3.4e-49
SQE47238.1|1032325_1032847_-	phage protein	NA	A0A0N9ST98	Staphylococcus_phage	70.2	1.3e-65
SQE47239.1|1032830_1033505_-	phage protein	NA	A0A0N9SHW2	Staphylococcus_phage	67.7	6.3e-81
SQE47240.1|1033506_1033923_-	phage protein	NA	A0A0N9RTW0	Staphylococcus_phage	70.7	2.4e-43
SQE47241.1|1033944_1034508_-	phage protein	NA	A0A0N9SGV3	Staphylococcus_phage	62.8	2.4e-49
SQE47242.1|1034589_1035591_-	phage protein	NA	A0A0N9S885	Staphylococcus_phage	80.0	6.4e-90
SQE47243.1|1035617_1036049_-	phage protein	NA	A0A0N9SIW4	Staphylococcus_phage	65.8	1.3e-42
SQE47244.1|1036077_1037583_-	phage protein	NA	A0A0N9RRJ7	Staphylococcus_phage	42.7	1.9e-93
SQE47245.1|1037575_1039126_-	phage protein	NA	A0A0N9SK48	Staphylococcus_phage	69.0	1.4e-208
SQE47246.1|1039145_1040951_-	phage protein	NA	A0A0N9RZP6	Staphylococcus_phage	78.2	3.9e-162
SQE47247.1|1040950_1041841_-	phage protein	NA	A0A0N9SHV5	Staphylococcus_phage	56.9	6.8e-91
SQE47248.1|1042631_1043840_-	phage protein	NA	A0A0N9SK37	Staphylococcus_phage	38.1	1.2e-69
1042439:1042454	attR	CTTTATAATCATCTAA	NA	NA	NA	NA
SQE47249.1|1043840_1044026_-	phage protein	NA	A0A0N7GFG2	Staphylococcus_phage	59.6	3.2e-11
SQE47250.1|1044042_1044375_-	phage DNA-binding protein	NA	NA	NA	NA	NA
SQE47251.1|1044576_1046058_-	phage protein	NA	A0A0N9SGU3	Staphylococcus_phage	43.6	5.0e-107
SQE47252.1|1046172_1048452_+	phage protein	NA	A0A0N9S864	Staphylococcus_phage	58.2	6.1e-253
SQE47253.1|1048473_1049367_+	phage protein	NA	A0A0N9SIV7	Staphylococcus_phage	34.9	9.6e-37
>prophage 3
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1060602	1079555	2472120		Staphylococcus_phage(79.17%)	30	NA	NA
SQE47266.1|1060602_1061886_+	phage protein	NA	A0A0N9RZM2	Staphylococcus_phage	52.3	3.0e-124
SQE47267.1|1061895_1062915_+	phage protein	NA	A0A0N9ST56	Staphylococcus_phage	40.3	1.1e-63
SQE47268.1|1063046_1063289_+	phage protein	NA	NA	NA	NA	NA
SQE47269.1|1063305_1063803_+	phage protein	NA	NA	NA	NA	NA
SQE47270.1|1063814_1064465_+	phage protein	NA	NA	NA	NA	NA
SQE47271.1|1064506_1065457_+	phage protein	NA	A0A0N7GFF9	Staphylococcus_phage	60.3	6.1e-98
SQE47272.1|1065559_1066528_+	phage protein	NA	A0A0N9SGS5	Staphylococcus_phage	75.2	1.6e-141
SQE47273.1|1066712_1067234_+	phage protein	NA	A0A0N9S850	Staphylococcus_phage	52.6	2.3e-43
SQE47274.1|1067251_1068817_+	phage protein	NA	A0A0N9SIU7	Staphylococcus_phage	72.6	2.3e-219
SQE47275.1|1068832_1069945_+	phage protein	NA	A0A0N9RRG7	Staphylococcus_phage	62.6	6.0e-137
SQE47276.1|1069944_1071699_+	phage putative phosphoesterase	NA	A0A0N9SK20	Staphylococcus_phage	57.5	4.5e-195
SQE47277.1|1072096_1072519_+	phage protein	NA	A0A0N9RRH5	Staphylococcus_phage	46.6	1.3e-23
SQE47278.1|1072536_1072941_+	phage protein	NA	I7DJR5	Staphylococcus_virus	32.9	5.5e-08
SQE47279.1|1072930_1073329_+	PVL orf 52-like protein	NA	A0A1J0MFF1	Staphylococcus_phage	52.3	1.5e-29
SQE47280.1|1073325_1073682_+	yopX family protein	NA	Q4Z921	Staphylococcus_phage	47.9	6.6e-21
SQE47281.1|1073683_1073887_+	Uncharacterised protein	NA	Q4ZC08	Staphylococcus_virus	61.3	7.5e-14
SQE47282.1|1073876_1074104_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47283.1|1074096_1074324_+	Uncharacterised protein	NA	A1BUA9	Staphylococcus_virus	34.6	5.5e-05
SQE47284.1|1074324_1074612_+	Uncharacterised protein	NA	A0A2I6PCT3	Staphylococcus_phage	91.6	9.2e-42
SQE47285.1|1074612_1074786_+	Uncharacterised protein	NA	A0A2H4PQJ2	Staphylococcus_phage	93.0	4.9e-22
SQE47286.1|1074786_1074984_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47287.1|1074997_1075177_+	Uncharacterised protein	NA	Q4ZD38	Staphylococcus_phage	83.1	2.8e-20
SQE47288.1|1075177_1075663_+	phage protein	NA	A0A1J0MFQ4	Staphylococcus_phage	79.0	1.9e-63
SQE47289.1|1075659_1075824_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47290.1|1075825_1076044_+	Uncharacterised protein	NA	V5XV41	Staphylococcus_phage	56.8	2.1e-17
SQE47291.1|1076054_1076543_+	Dimeric dUTPase	NA	A0A2H4J513	uncultured_Caudovirales_phage	42.3	1.2e-25
SQE47292.1|1076729_1076864_+	Uncharacterised protein	NA	A0A0U1WEY6	Staphylococcus_phage	71.9	1.4e-05
SQE47293.1|1076854_1077163_+	Uncharacterised protein	NA	I6P9N2	Staphylococcus_phage	51.6	2.7e-15
SQE47294.1|1077764_1078076_-	Uncharacterised protein	NA	A0A2H4JG55	uncultured_Caudovirales_phage	42.7	2.0e-13
SQE47295.1|1078733_1079555_-	exfoliative toxin B	NA	A0A0E3T8P7	Staphylococcus_phage	35.6	2.5e-39
>prophage 4
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1087999	1116457	2472120		Staphylococcus_phage(81.82%)	39	NA	NA
SQE47305.1|1087999_1089103_+	Staphylokinase	NA	Q4ZCZ1	Staphylococcus_virus	40.7	1.9e-74
SQE47306.1|1089269_1089905_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47307.1|1090110_1090341_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47308.1|1090368_1090854_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47309.1|1091197_1091959_+	phage putative phosphoesterase	NA	A0A0N9SKA2	Staphylococcus_phage	48.2	2.2e-58
SQE47310.1|1091982_1095930_+	DNA polymerase III, alpha subunit	NA	A0A0N7GFH1	Staphylococcus_phage	71.5	0.0e+00
SQE47311.1|1096003_1096384_+	phage protein	NA	A0A0N9STI1	Staphylococcus_phage	43.2	2.8e-22
SQE47312.1|1096471_1096804_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47313.1|1096781_1098077_+	phage ATP-dependent DNA ligase protein	NA	A0A0N9SK95	Staphylococcus_phage	59.3	1.3e-143
SQE47314.1|1098167_1098653_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47315.1|1098701_1099118_+	phage protein	NA	A0A1W6JQ32	Staphylococcus_phage	63.5	3.4e-37
SQE47316.1|1099071_1099245_+	phage protein	NA	A0A0N9SH07	Staphylococcus_phage	63.8	3.0e-11
SQE47317.1|1099254_1099500_+	phage protein	NA	NA	NA	NA	NA
SQE47318.1|1099515_1099812_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47319.1|1099828_1100128_+	phage protein	NA	NA	NA	NA	NA
SQE47320.1|1100169_1100433_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47321.1|1100482_1101247_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47322.1|1101312_1101921_+	phage protein	NA	A0A0N9RZV9	Staphylococcus_phage	69.7	1.3e-77
SQE47323.1|1101954_1102155_-	Uncharacterised protein	NA	Q77YW9	Bacillus_phage	58.3	1.6e-08
SQE47324.1|1102243_1103077_+	DNA-cytosine methyltransferase	NA	A0A0N9SK84	Staphylococcus_phage	35.1	6.2e-30
SQE47325.1|1103110_1103392_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47326.1|1103415_1103727_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47327.1|1103726_1104497_+	SPFH domain / Band 7 family	NA	W5RV94	Staphylococcus_phage	62.3	4.5e-67
SQE47328.1|1104496_1105102_+	phage protein	NA	W5R8R7	Staphylococcus_phage	33.2	1.6e-14
SQE47329.1|1105188_1105698_+	phage protein	NA	A0A0N9SIY9	Staphylococcus_phage	49.1	1.4e-37
SQE47330.1|1105709_1106408_+	phage protein	NA	A0A0N9RRN5	Staphylococcus_phage	45.3	1.7e-52
SQE47331.1|1106452_1106614_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47332.1|1106594_1106999_+	phage protein NrdI	NA	A0A0N9RZU5	Staphylococcus_phage	49.6	3.2e-24
SQE47333.1|1107010_1110256_+	ribonucleoside-diphosphate reductase	NA	A0A1P8CX40	Bacillus_phage	56.7	0.0e+00
SQE47334.1|1110243_1111269_+	ribonucleoside-diphosphate reductase subunit beta	NA	R4JMU8	Bacillus_phage	56.6	5.0e-98
SQE47335.1|1111298_1111943_+	phage protein	NA	A0A0N9RTZ3	Staphylococcus_phage	51.2	2.8e-54
SQE47336.1|1111945_1112188_+	phage glutaredoxin protein	NA	A0A0N9SGY3	Staphylococcus_phage	68.4	7.8e-26
SQE47337.1|1112205_1112439_+	phage protein	NA	NA	NA	NA	NA
SQE47338.1|1112452_1113166_+	phage protein	NA	A0A0N9SIY2	Staphylococcus_phage	63.8	3.2e-83
SQE47339.1|1113171_1113519_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47340.1|1113463_1114099_+	phage protein	NA	A0A0N7GFG7	Staphylococcus_phage	77.1	5.9e-81
SQE47341.1|1114102_1114219_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47342.1|1114341_1114914_+	DNA-binding protein	NA	NA	NA	NA	NA
SQE47343.1|1114906_1116457_+	site-specific recombinase	NA	A0A0N9RZT8	Staphylococcus_phage	38.8	7.6e-90
>prophage 5
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1152237	1173652	2472120		Staphylococcus_phage(89.47%)	24	NA	NA
SQE47379.1|1152237_1153647_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	52.1	2.4e-135
SQE47380.1|1153643_1154633_+	O-succinylbenzoic acid (OSB) synthetase	NA	A0A2H4PQM0	Staphylococcus_phage	47.6	5.2e-84
SQE47381.1|1154629_1154860_-	protein YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	6.5e-30
SQE47382.1|1154922_1155393_+	MutT/NUDIX hydrolase family protein	NA	A0A2H4PQM4	Staphylococcus_phage	52.2	6.4e-40
SQE47383.1|1155373_1156156_+	dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	61.6	4.4e-86
SQE47384.1|1156183_1157764_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	75.4	2.8e-241
SQE47385.1|1158193_1159393_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	79.6	2.1e-180
SQE47386.1|1159481_1160390_+	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	69.4	5.6e-93
SQE47387.1|1160570_1161407_+	oxidoreductase, aldo/keto reductase family	NA	A0A2H4PQR8	Staphylococcus_phage	67.9	1.5e-108
SQE47388.1|1161788_1162154_-	CrcB-like protein	NA	NA	NA	NA	NA
SQE47389.1|1162150_1162516_-	protein crcB	NA	A0A2H4PQR0	Staphylococcus_phage	52.9	4.8e-27
SQE47390.1|1162536_1162839_-	membrane protein	NA	NA	NA	NA	NA
SQE47391.1|1162993_1163704_+	putative transaldolase	NA	M1PR54	Cyanophage	37.0	1.7e-20
SQE47392.1|1163797_1164247_+	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE47393.1|1164229_1164664_-	comK family protein	NA	NA	NA	NA	NA
SQE47394.1|1164678_1165140_-	putative DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	41.0	3.6e-19
SQE47395.1|1165338_1165563_+	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE47396.1|1165725_1166592_+	glucosaminidase	NA	Q4ZE13	Staphylococcus_virus	39.7	1.4e-40
SQE47397.1|1166930_1168601_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	57.1	6.2e-13
SQE47398.1|1168986_1170033_+	riboflavin specific deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	51.7	5.7e-105
SQE47399.1|1170037_1170667_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	55.7	3.8e-56
SQE47400.1|1170680_1171862_+	3,4-dihydroxy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	65.4	3.8e-150
SQE47401.1|1171870_1172332_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	64.5	2.1e-51
SQE47402.1|1172611_1173652_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	67.0	5.1e-122
>prophage 6
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1177240	1185391	2472120	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
SQE47407.1|1177240_1177804_-	rRNA methylase	NA	A0A2H4PQV0	Staphylococcus_phage	55.1	2.1e-53
SQE47408.1|1177800_1178760_-	radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	79.2	1.2e-61
SQE47409.1|1178871_1180053_+	multidrug resistance transporter protein	NA	A0A2H4PQR6	Staphylococcus_phage	62.8	1.6e-132
SQE47410.1|1180400_1182812_+|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.9	0.0e+00
SQE47411.1|1182834_1183146_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	1.0e-33
SQE47412.1|1184128_1185391_-	NAD(FAD)-utilizing dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.7e-34
>prophage 7
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1295615	1307043	2472120	tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
SQE47512.1|1295615_1296611_+	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	28.2	1.7e-05
SQE47513.1|1296624_1297650_+|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE47514.1|1297663_1298803_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.5	2.4e-88
SQE47515.1|1298818_1299082_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	52.6	8.0e-08
SQE47516.1|1299389_1301669_+	preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	31.5	5.5e-28
SQE47517.1|1301762_1304045_+	ssDNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.6	3.5e-67
SQE47518.1|1304056_1304575_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	48.8	4.0e-27
SQE47519.1|1304853_1307043_+	GTP pyrophosphokinase	NA	A0A2I2L310	Orpheovirus	35.5	1.9e-09
>prophage 8
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1438702	1448250	2472120		Bacillus_phage(42.86%)	11	NA	NA
SQE47654.1|1438702_1439590_+	tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	32.1	2.1e-39
SQE47655.1|1439613_1440117_-	Putative cytosolic protein	NA	NA	NA	NA	NA
SQE47656.1|1440214_1440949_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	29.3	9.4e-06
SQE47657.1|1440932_1441478_+	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.3	3.0e-09
SQE47658.1|1441474_1442215_+	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
SQE47659.1|1442343_1443069_+	transcriptional regulatory protein SrrA	NA	W8CYM9	Bacillus_phage	40.5	3.0e-44
SQE47660.1|1443052_1444789_+	signal transduction histidine kinase SsrB	NA	W8CYF6	Bacillus_phage	30.1	1.0e-29
SQE47661.1|1444920_1445469_+	membrane protein	NA	NA	NA	NA	NA
SQE47662.1|1445573_1445822_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	52.0	3.4e-16
SQE47663.1|1445927_1446884_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE47664.1|1446873_1448250_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	32.9	4.6e-54
>prophage 9
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	1843016	1851444	2472120		Prochlorococcus_phage(33.33%)	9	NA	NA
SQE48229.1|1843016_1843583_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	38.4	5.7e-27
SQE48230.1|1843585_1844614_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.1e-63
SQE48231.1|1844618_1846040_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.2	1.6e-49
SQE48232.1|1846018_1848208_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.3	6.9e-137
SQE48233.1|1848200_1848872_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
SQE48234.1|1848871_1849144_-	phosphoribosylformylglycinamidine synthase PurS component	NA	NA	NA	NA	NA
SQE48235.1|1849143_1849851_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	8.1e-47
SQE48236.1|1849847_1850975_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQE48237.1|1850961_1851444_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.3	1.2e-22
>prophage 10
LS483304	Staphylococcus hyicus strain NCTC10350 genome assembly, chromosome: 1	2472120	2075192	2084805	2472120		uncultured_Caudovirales_phage(33.33%)	8	NA	NA
SQE48528.1|2075192_2077298_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	85.9	0.0e+00
SQE48529.1|2077269_2077659_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	62.8	1.5e-42
SQE48531.1|2078376_2079246_+	putative permease	NA	NA	NA	NA	NA
SQE48533.1|2079275_2079776_+	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
SQE48534.1|2080067_2081579_+	di-tripeptide ABC transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.8	9.8e-74
SQE48536.1|2081941_2082871_+	transcriptional regulator	NA	A0A1V0SBJ0	Catovirus	24.4	3.2e-11
SQE48538.1|2083157_2083685_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
SQE48539.1|2083755_2084805_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.0	7.4e-20
