assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	1	459596-459696	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|129aa|up_6|LS483309.1_452202_452589_-,NA|86aa|up_4|LS483309.1_453539_453797_-,NA|221aa|down_1|LS483309.1_460786_461449_-	NA|88aa|up_9|LS483309.1_450315_450579_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|LS483309.1_450878_451130_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|LS483309.1_451555_452137_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_6|LS483309.1_452202_452589_-	NA	NA|209aa|up_5|LS483309.1_452840_453467_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|LS483309.1_453539_453797_-	NA	NA|508aa|up_3|LS483309.1_453911_455435_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|LS483309.1_455450_456020_-	TIGR03137, AhpC, peroxiredoxin	NA|269aa|up_1|LS483309.1_456460_457267_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|LS483309.1_457347_458736_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|LS483309.1_459712_460669_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|LS483309.1_460786_461449_-	NA	NA|136aa|down_2|LS483309.1_461591_461999_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|LS483309.1_462511_463090_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|LS483309.1_463089_464358_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|LS483309.1_464395_465862_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|LS483309.1_465886_467428_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|LS483309.1_467495_468689_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|LS483309.1_468715_468916_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|LS483309.1_469413_469644_-	pfam12645, HTH_16, Helix-turn-helix domain
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	2	732605-732697	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|LS483309.1_729088_729196_+,NA|169aa|down_4|LS483309.1_736444_736951_+,NA|239aa|down_5|LS483309.1_737112_737829_+	NA|313aa|up_9|LS483309.1_723290_724229_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|LS483309.1_724439_724976_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|LS483309.1_725144_725621_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|LS483309.1_725660_726956_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|LS483309.1_726998_727505_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|LS483309.1_728003_729014_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|LS483309.1_729088_729196_+	NA	NA|139aa|up_2|LS483309.1_729288_729705_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|LS483309.1_729701_731363_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|LS483309.1_731751_732387_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|LS483309.1_732765_733653_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|LS483309.1_733764_734751_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|LS483309.1_734805_735525_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|LS483309.1_735508_736309_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|LS483309.1_736444_736951_+	NA	NA|239aa|down_5|LS483309.1_737112_737829_+	NA	NA|263aa|down_6|LS483309.1_737997_738786_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|LS483309.1_739036_739411_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|LS483309.1_740358_741288_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|LS483309.1_741482_741707_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	3	848349-848431	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|203aa|up_9|LS483309.1_834275_834884_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|237aa|up_8|LS483309.1_835243_835954_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|LS483309.1_835937_836942_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|LS483309.1_837415_839356_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_5|LS483309.1_839632_841510_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|LS483309.1_841521_843303_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|LS483309.1_843524_844502_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|LS483309.1_844494_846009_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|LS483309.1_846248_847307_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|LS483309.1_847657_848200_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|LS483309.1_848879_849797_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|LS483309.1_850066_851572_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|LS483309.1_851912_852413_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|LS483309.1_852432_853299_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|LS483309.1_854099_854498_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|LS483309.1_854460_856566_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|LS483309.1_856683_857655_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_7|LS483309.1_858320_859334_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|LS483309.1_859320_860277_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|LS483309.1_860273_861035_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	4	894853-894938	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	894883-894908|894883-894908|894883-894908|894883-894908	LS483309.1_857846-857821|LS483309.1_327840-327815|LS483309.1_857902-857877|LS483309.1_986896-986871	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|200aa|up_1|LS483309.1_892889_893489_+,NA	NA|217aa|up_9|LS483309.1_883119_883770_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_8|LS483309.1_883766_884003_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_7|LS483309.1_884271_886257_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_6|LS483309.1_886264_889111_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_5|LS483309.1_889772_890705_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_4|LS483309.1_890710_891550_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_3|LS483309.1_891557_892043_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|285aa|up_2|LS483309.1_892050_892905_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|200aa|up_1|LS483309.1_892889_893489_+	NA	NA|312aa|up_0|LS483309.1_893555_894491_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|LS483309.1_895370_896282_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|283aa|down_1|LS483309.1_896278_897127_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|LS483309.1_897382_898327_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|LS483309.1_898899_899487_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|LS483309.1_899729_900632_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|LS483309.1_901334_901964_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|LS483309.1_902606_903620_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|LS483309.1_903672_904683_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|LS483309.1_904821_906012_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|LS483309.1_906133_906895_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	5	938042-938123	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	938066-938099|938066-938099	LS483309.1_1418259-1418226|LS483309.1_1509641-1509674	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_1|LS483309.1_936944_937058_+,NA	NA|165aa|up_9|LS483309.1_932572_933067_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_8|LS483309.1_933465_933888_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|31aa|up_7|LS483309.1_934035_934128_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|188aa|up_6|LS483309.1_934187_934751_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|LS483309.1_934833_935373_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|LS483309.1_935522_935843_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|LS483309.1_935986_936343_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|LS483309.1_936500_936881_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|LS483309.1_936944_937058_+	NA	NA|293aa|up_0|LS483309.1_937059_937938_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LS483309.1_938676_939066_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LS483309.1_939058_939355_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LS483309.1_939604_940630_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LS483309.1_940622_941318_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LS483309.1_941335_942157_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LS483309.1_942510_942705_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LS483309.1_942937_943789_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LS483309.1_944116_944878_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LS483309.1_944975_946283_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LS483309.1_946397_947639_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6	986897-987179	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	3	7	986927-986952|986927-986952|987041-987066|987041-987066|987041-987066|987097-987149|987097-987149	LS483309.1_986871-986896|LS483309.1_857821-857846|LS483309.1_894964-894939|LS483309.1_2076873-2076848|LS483309.1_406080-406105|LS483309.1_292277-292329|LS483309.1_2756291-2756239	NA	4	4	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|LS483309.1_975785_977282_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|LS483309.1_977274_977616_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|LS483309.1_977615_978044_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|LS483309.1_978036_980442_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|LS483309.1_980572_980956_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|LS483309.1_981019_981613_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|LS483309.1_982028_982406_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|LS483309.1_982767_983895_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|LS483309.1_984202_985393_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|LS483309.1_985501_986746_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|LS483309.1_987248_988178_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|LS483309.1_988419_989799_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|LS483309.1_989788_990994_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|LS483309.1_991344_992676_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|LS483309.1_993000_993576_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|LS483309.1_993580_994105_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|LS483309.1_994120_994696_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|LS483309.1_994855_998332_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|LS483309.1_998332_1001986_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|391aa|down_9|LS483309.1_1002141_1003314_+	pfam00872, Transposase_mut, Transposase, Mutator family
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	7	1210063-1210148	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	1210093-1210118|1210093-1210118|1210093-1210118|1210093-1210118	LS483309.1_327815-327840|LS483309.1_857877-857902|LS483309.1_857821-857846|LS483309.1_857933-857958	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_7|LS483309.1_1204039_1204546_+,NA|62aa|up_4|LS483309.1_1206346_1206532_-,NA|78aa|up_3|LS483309.1_1207153_1207387_-,NA|49aa|up_1|LS483309.1_1209495_1209642_+,NA|66aa|up_0|LS483309.1_1209625_1209823_+,NA|76aa|down_7|LS483309.1_1217123_1217351_+	NA|110aa|up_9|LS483309.1_1202268_1202598_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|LS483309.1_1202966_1203368_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|LS483309.1_1204039_1204546_+	NA	NA|162aa|up_6|LS483309.1_1204817_1205303_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|LS483309.1_1205456_1205807_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|LS483309.1_1206346_1206532_-	NA	NA|78aa|up_3|LS483309.1_1207153_1207387_-	NA	NA|320aa|up_2|LS483309.1_1207863_1208823_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|LS483309.1_1209495_1209642_+	NA	NA|66aa|up_0|LS483309.1_1209625_1209823_+	NA	NA|239aa|down_0|LS483309.1_1210323_1211040_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|LS483309.1_1211147_1211873_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|LS483309.1_1211967_1212693_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|LS483309.1_1213130_1214132_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_4|LS483309.1_1214151_1215087_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|150aa|down_5|LS483309.1_1215258_1215708_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|354aa|down_6|LS483309.1_1215754_1216816_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_7|LS483309.1_1217123_1217351_+	NA	NA|316aa|down_8|LS483309.1_1217655_1218603_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_9|LS483309.1_1218851_1219040_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	8	2316620-2316770	7	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|LS483309.1_2311491_2311722_-,NA|364aa|up_0|LS483309.1_2315510_2316602_+,NA	NA|237aa|up_9|LS483309.1_2307101_2307812_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LS483309.1_2307932_2308376_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LS483309.1_2308575_2308989_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LS483309.1_2309446_2310820_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LS483309.1_2311491_2311722_-	NA	NA|313aa|up_4|LS483309.1_2311752_2312691_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LS483309.1_2313125_2313791_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LS483309.1_2313942_2314263_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LS483309.1_2314264_2315245_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LS483309.1_2315510_2316602_+	NA	NA|68aa|down_0|LS483309.1_2317630_2317834_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_1|LS483309.1_2317892_2319029_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|LS483309.1_2320114_2320972_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LS483309.1_2321039_2321822_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|LS483309.1_2322053_2323859_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|LS483309.1_2324539_2326078_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|LS483309.1_2326112_2328245_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|LS483309.1_2328256_2328691_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|LS483309.1_2328690_2329797_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2499aa|down_9|LS483309.1_2330115_2337612_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9	2445460-2445653	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	16	2445483-2445515|2445483-2445515|2445483-2445515|2445483-2445515|2445483-2445515|2445483-2445515|2445539-2445574|2445539-2445574|2445539-2445574|2445539-2445574|2445539-2445574|2445598-2445630|2445598-2445630|2445598-2445630|2445598-2445630|2445598-2445630	LS483309.1_894919-894951|LS483309.1_1210082-1210050|LS483309.1_1418213-1418181|LS483309.1_1509687-1509719|LS483309.1_2076828-2076860|LS483309.1_2720704-2720736|LS483309.1_1210029-1209994|LS483309.1_1874969-1874934|LS483309.1_327975-327940|LS483309.1_1689697-1689732|LS483309.1_2087572-2087607|LS483309.1_894919-894951|LS483309.1_1210082-1210050|LS483309.1_1418213-1418181|LS483309.1_2076828-2076860|LS483309.1_2720704-2720736	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_8|LS483309.1_2435987_2436152_+,NA|106aa|up_7|LS483309.1_2436396_2436714_+,NA|84aa|up_4|LS483309.1_2441838_2442090_+,NA	NA|303aa|up_9|LS483309.1_2434946_2435855_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|LS483309.1_2435987_2436152_+	NA	NA|106aa|up_7|LS483309.1_2436396_2436714_+	NA	NA|1056aa|up_6|LS483309.1_2436900_2440068_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|LS483309.1_2440184_2441450_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|LS483309.1_2441838_2442090_+	NA	NA|255aa|up_3|LS483309.1_2442081_2442846_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|LS483309.1_2443007_2443448_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|LS483309.1_2443440_2444652_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|LS483309.1_2444753_2445104_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|LS483309.1_2445794_2446817_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|LS483309.1_2446836_2447436_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|LS483309.1_2447442_2447676_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|LS483309.1_2447681_2448128_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|LS483309.1_2448141_2448627_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|LS483309.1_2448623_2449883_-	cd00887, MoeA, MoeA family	NA|169aa|down_6|LS483309.1_2450441_2450948_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_7|LS483309.1_2450978_2451983_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_8|LS483309.1_2452152_2452758_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_9|LS483309.1_2452758_2453430_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
GCA_900474575.1_40415_F02	LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	10	2944794-2944877	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2944820-2944851|2944820-2944851|2944820-2944851|2944820-2944851	LS483309.1_895019-895050|LS483309.1_895077-895108|LS483309.1_1135783-1135814|LS483309.1_1509731-1509762	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|64aa|up_7|LS483309.1_2938745_2938937_+,NA|166aa|up_5|LS483309.1_2940023_2940521_-,NA	NA|253aa|up_9|LS483309.1_2936025_2936784_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|LS483309.1_2936773_2938654_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|LS483309.1_2938745_2938937_+	NA	NA|134aa|up_6|LS483309.1_2939554_2939956_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|166aa|up_5|LS483309.1_2940023_2940521_-	NA	NA|250aa|up_4|LS483309.1_2940522_2941272_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_3|LS483309.1_2941290_2942094_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|190aa|up_2|LS483309.1_2942904_2943474_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|LS483309.1_2943726_2944122_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|LS483309.1_2944189_2944543_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|LS483309.1_2945095_2945935_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|LS483309.1_2945977_2946697_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|LS483309.1_2946696_2948574_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|LS483309.1_2948640_2950020_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|116aa|down_4|LS483309.1_2950163_2950511_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|32aa|down_5|LS483309.1_2950677_2950773_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
