bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	4.1|894883|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.15	26	1	0	1	26	857846	857821	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	857821-857846	CGGGGCCCCAACACAGAAGCAGGCGG	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	4.1|894883|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	327840	327815	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	327815-327840	CGGGCCCCCAACATAGAAGCTGGCGG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	4.1|894883|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	857902	857877	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	857877-857902	CGGGGCCCCAACATAGAAGCAGGCGG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	4.1|894883|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	986896	986871	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	986871-986896	CGGGGCCCCAACACAGAGGCTGGTGG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	5.1|938066|34|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	100.00	34	0	0	1	34	1418259	1418226	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1418226-1418259	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	5.1|938066|34|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	100.00	34	0	0	1	34	1509641	1509674	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1509641-1509674	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.1|986927|26|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.15	26	1	0	1	26	986871	986896	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	986871-986896	CGGGGCCCCAACACAGAGGCTGGTGG	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.1|986927|26|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	857821	857846	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	857821-857846	CGGGGCCCCAACACAGAAGCAGGCGG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.3|987041|26|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.15	26	1	0	1	26	894964	894939	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	894939-894964	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.3|987041|26|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.15	26	1	0	1	26	2076873	2076848	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	2076848-2076873	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.3|987041|26|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	406080	406105	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	406080-406105	CGGGGCCCCAACAAAGAAGCTGACGA	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.4|987097|53|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	98.11	53	1	0	1	53	292277	292329	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-17	82.4	1.0	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA	292277-292329	GGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCAA	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	6.4|987097|53|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	98.11	53	1	0	1	53	2756291	2756239	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-17	82.4	1.0	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA	2756239-2756291	TTGGGAGTGGGACAGAAATGATATTTTCGTAAAATTTATTTCGTCGTCCCACC	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	7.1|1210093|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.15	26	1	0	1	26	327815	327840	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	327815-327840	CGGGCCCCCAACATAGAAGCTGGCGG	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	7.1|1210093|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.15	26	1	0	1	26	857877	857902	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	857877-857902	CGGGGCCCCAACATAGAAGCAGGCGG	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	7.1|1210093|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	857821	857846	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	857821-857846	CGGGGCCCCAACACAGAAGCAGGCGG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	7.1|1210093|26|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	92.31	26	2	0	1	26	857933	857958	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	857933-857958	CGGGGCCCCAACATAAAAGCAGGCGG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.1|2445483|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	894919	894951	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	894919-894951	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.1|2445483|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1210082	1210050	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1210050-1210082	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.1|2445483|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1418213	1418181	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1418181-1418213	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.1|2445483|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1509687	1509719	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1509687-1509719	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.1|2445483|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2076828	2076860	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2076828-2076860	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.1|2445483|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2720704	2720736	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2720704-2720736	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.2|2445539|36|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	100.00	36	0	0	1	36	1210029	1209994	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1209994-1210029	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.2|2445539|36|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	97.22	36	1	0	1	36	1874969	1874934	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1874934-1874969	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.2|2445539|36|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	94.44	36	2	0	1	36	327975	327940	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	327940-327975	TAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.2|2445539|36|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	94.44	36	2	0	1	36	1689697	1689732	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1689697-1689732	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.2|2445539|36|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	94.44	36	2	0	1	36	2087572	2087607	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2087572-2087607	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.3|2445598|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	894919	894951	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	894919-894951	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.3|2445598|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1210082	1210050	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1210050-1210082	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.3|2445598|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1418213	1418181	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1418181-1418213	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.3|2445598|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2076828	2076860	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2076828-2076860	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	9.3|2445598|33|LS483309|CRT	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2720704	2720736	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2720704-2720736	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	10.1|2944820|32|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.88	32	1	0	1	32	895019	895050	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	895019-895050	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	10.1|2944820|32|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.88	32	1	0	1	32	895077	895108	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	895077-895108	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	10.1|2944820|32|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.88	32	1	0	1	32	1135783	1135814	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1135783-1135814	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
LS483309	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	10.1|2944820|32|LS483309|CRISPRCasFinder	LS483309.1	Staphylococcus aureus strain NCTC9944 genome assembly, chromosome: 1	96.88	32	1	0	1	32	1509731	1509762	459596-459696|732605-732697|848349-848431|894853-894938|938042-938123|986897-987179|1210063-1210148|2316620-2316770|2445460-2445653|2944794-2944877	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1509731-1509762	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
