The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	311428	322179	2702202	holin,protease,integrase,tail	Staphylococcus_phage(61.54%)	14	311318:311335	322404:322421
311318:311335	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
SQE32695.1|311428_312634_-|integrase	phage integrase family protein	integrase	A0A1X9H094	Staphylococcus_phage	97.5	8.3e-217
SQE32696.1|312733_313387_-|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQE32697.1|313828_314083_+	phage-like protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	1.3e-42
SQE32698.1|314082_315549_+|tail	putative phage tail protein	tail	A0A0K1LKC9	Staphylococcus_phage	99.4	2.2e-272
SQE32699.1|315548_315938_+	phage-like protein	NA	Q4ZCZ7	Staphylococcus_virus	94.6	7.1e-61
SQE32700.1|315930_316095_+	phage protein	NA	M9QX31	Staphylococcus_phage	94.4	2.1e-22
SQE32701.1|316140_316380_+	hypothetical phage-related protein	NA	A0A0F6N3M6	Staphylococcus_phage	94.1	2.4e-27
SQE32702.1|317032_318265_+	type-I specificity determinant subunit	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	6.8e-49
SQE32703.1|318316_318619_+|holin	holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
SQE32704.1|318630_318750_+	amidase	NA	B7T0L1	Staphylococcus_virus	85.7	2.3e-07
SQE32705.1|318743_319154_+	amidase	NA	A0A2I6PET7	Staphylococcus_phage	95.5	2.5e-72
SQE32706.1|319177_320083_+	amidase	NA	A0A2I6PET7	Staphylococcus_phage	97.0	1.3e-169
SQE32707.1|321139_321727_+	Uncharacterised protein	NA	Q4ZBG7	Staphylococcus_virus	99.5	7.1e-97
SQE32708.1|321726_322179_+	Uncharacterised protein	NA	B7T0L3	Staphylococcus_virus	100.0	7.9e-72
322404:322421	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	385186	403829	2702202	transposase,terminase	Staphylococcus_phage(65.0%)	25	NA	NA
SQE32774.1|385186_386653_+	Inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
SQE32775.1|386677_388219_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.6e-23
SQE32776.1|388312_389449_-	Integrase	NA	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
SQE32777.1|389532_390318_-	transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	34.1	7.5e-09
SQE32778.1|390434_390662_+	phage protein	NA	NA	NA	NA	NA
SQE32779.1|390707_390968_+	pathogenicity island protein	NA	NA	NA	NA	NA
SQE32780.1|391014_391170_+	pathogenicity island protein	NA	NA	NA	NA	NA
SQE32781.1|391154_391358_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
SQE32782.1|391359_391743_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	1.1e-63
SQE32783.1|391743_392061_+	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	9.3e-19
SQE32784.1|392124_392994_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	94.5	4.2e-162
SQE32785.1|393007_394717_+	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	96.1	0.0e+00
SQE32786.1|395047_395428_+	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	98.4	1.2e-68
SQE32787.1|395424_396066_+|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	93.0	2.1e-110
SQE32788.1|396412_396754_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	6.4e-58
SQE32789.1|396765_397344_+|transposase	transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	37.4	2.2e-26
SQE32790.1|397361_397580_+	hypothetical mobile element-associated protein	NA	NA	NA	NA	NA
SQE32791.1|397582_398158_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	96.0	3.5e-88
SQE32792.1|398160_398502_+|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	92.9	1.9e-54
SQE32793.1|398498_399068_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	97.4	1.7e-100
SQE32794.1|399222_399927_-	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
SQE32795.1|400387_400738_+	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	62.4	1.3e-18
SQE32796.1|400855_401368_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	99.4	1.9e-69
SQE32797.1|402139_402940_+	enterotoxin C-bovine	NA	A0A097PAT7	Streptococcus_pyogenes_phage	44.2	2.8e-51
SQE32798.1|403106_403829_-	staphylococcal enterotoxin L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
>prophage 3
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	724117	731937	2702202		Hokovirus(16.67%)	10	NA	NA
SQE33085.1|724117_725173_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
SQE33086.1|725172_725859_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQE33087.1|725833_726307_-	DoxX family protein	NA	NA	NA	NA	NA
SQE33088.1|726648_727089_-	lipoprotein	NA	NA	NA	NA	NA
SQE33089.1|727368_727953_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE33090.1|728051_728765_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQE33091.1|728768_729188_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	4.9e-07
SQE33092.1|729189_729858_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQE33093.1|730208_730802_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
SQE33094.1|730785_731937_+	Para-aminobenzoate synthetase component I	NA	A0A0B5J984	Pandoravirus	35.3	1.6e-23
>prophage 4
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	743908	758366	2702202		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
SQE33103.1|743908_744967_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
SQE33104.1|745124_745667_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQE33105.1|746272_747190_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
SQE33106.1|747471_748977_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQE33107.1|749316_749817_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
SQE33108.1|749836_750703_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQE33109.1|751503_751902_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQE33110.1|751864_753970_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
SQE33111.1|754087_755059_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQE33112.1|755651_756665_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	77.7	8.4e-138
SQE33113.1|756651_757608_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	5.5e-06
SQE33114.1|757604_758366_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 5
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	848504	856292	2702202	holin,integrase	Staphylococcus_prophage(66.67%)	8	843516:843531	863319:863334
843516:843531	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
SQE33203.1|848504_849746_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	45.0	6.3e-111
SQE33204.1|849735_850200_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA	NA
SQE33205.1|850350_851748_+	Scaffold protein sufB	NA	NA	NA	NA	NA
SQE33206.1|851815_852376_-|integrase	phage-related integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	98.4	3.5e-101
SQE33207.1|853037_853271_+|holin	Phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	1.6e-36
SQE33208.1|853282_854038_+	Autolysin	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
SQE33209.1|854395_855322_+	leukocidin chain lukM precursor	NA	Q9MBN3	Staphylococcus_prophage	99.0	1.3e-174
SQE33210.1|855323_856292_+	Panton-Valentine leukocidin LukF-PV chain precursor	NA	Q9MBN2	Staphylococcus_prophage	98.4	7.2e-179
863319:863334	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 6
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	1014695	1023168	2702202		Synechococcus_phage(33.33%)	9	NA	NA
SQE33360.1|1014695_1015178_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
SQE33361.1|1015164_1016289_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SQE33362.1|1016292_1016997_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	40.8	1.2e-45
SQE33363.1|1016996_1017260_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQE33364.1|1017261_1017933_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQE33365.1|1017925_1020115_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.5	3.9e-140
SQE33366.1|1020093_1021578_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.3	7.9e-44
SQE33367.1|1021570_1022599_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.0e-61
SQE33368.1|1022601_1023168_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.4e-28
>prophage 7
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	1219521	1286502	2702202	transposase,tRNA,protease,head,capsid	Staphylococcus_phage(20.0%)	54	NA	NA
SQE33553.1|1219521_1220808_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
SQE33554.1|1220827_1222531_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQE33555.1|1222788_1227105_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	5.9e-23
SQE33556.1|1227394_1227862_+	Putative cytosolic protein	NA	NA	NA	NA	NA
SQE33557.1|1227882_1229058_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
SQE33558.1|1229078_1229363_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
SQE33559.1|1229359_1229677_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA	NA
SQE33560.1|1229681_1231799_+	protein translation initiation factor 2 (IF-2)	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
SQE33561.1|1232185_1232536_+	ribosome-binding factor A	NA	NA	NA	NA	NA
SQE33562.1|1232705_1233623_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQE33563.1|1233637_1234609_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
SQE33564.1|1234723_1234993_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQE33565.1|1237694_1239368_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQE33566.1|1239624_1241994_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
SQE33567.1|1241998_1242712_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE33568.1|1242742_1244008_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
SQE33569.1|1244007_1245294_+	peptidase, M16 family	NA	M1NN74	Moumouvirus	23.6	5.1e-15
SQE33570.1|1245293_1245998_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
SQE33571.1|1246102_1246930_+	protein with ACT domain	NA	NA	NA	NA	NA
SQE33572.1|1246948_1247341_+	DNA-binding protein	NA	NA	NA	NA	NA
SQE33573.1|1247374_1247953_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQE33574.1|1248425_1249577_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
SQE33575.1|1249741_1250785_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
SQE33576.1|1251138_1252698_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
SQE33577.1|1252994_1253210_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE33578.1|1253383_1254181_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
SQE33579.1|1254320_1256081_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQE33580.1|1256081_1256948_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
SQE33581.1|1257041_1257335_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQE33582.1|1257468_1259013_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
SQE33583.1|1259013_1259379_+	membrane protein	NA	NA	NA	NA	NA
SQE33584.1|1259405_1259897_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
SQE33585.1|1260199_1262818_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.6	1.4e-40
SQE33586.1|1262830_1264840_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.4	1.4e-59
SQE33587.1|1264854_1265388_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
SQE33588.1|1265862_1266681_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.5	1.8e-26
SQE33589.1|1266810_1268307_+	glycerol kinase	NA	NA	NA	NA	NA
SQE33590.1|1268464_1270138_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQE33591.1|1270284_1271202_+	hydrolase	NA	NA	NA	NA	NA
SQE33592.1|1271219_1272155_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQE33593.1|1272169_1272403_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
SQE33594.1|1272605_1273430_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.1	2.0e-28
SQE33595.1|1273426_1273927_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE33596.1|1274135_1274612_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	9.4e-23
SQE33597.1|1274723_1275983_+	GTP-binding protein	NA	NA	NA	NA	NA
SQE33598.1|1275979_1277218_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
SQE33599.1|1277461_1277830_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
SQE33600.1|1277848_1279189_+	glutamine synthetase	NA	NA	NA	NA	NA
SQE33601.1|1281085_1281292_+	Uncharacterised protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.1e-12
SQE33602.1|1282526_1282712_+	Uncharacterised protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
SQE33603.1|1283223_1283640_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE33604.1|1284486_1285809_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	A0A1J0MF61	Staphylococcus_phage	56.9	4.3e-110
SQE33605.1|1286022_1286145_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE33606.1|1286301_1286502_+|capsid	phage capsid and scaffold protein	capsid	NA	NA	NA	NA
>prophage 8
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	1549403	1557715	2702202	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQE33853.1|1549403_1550189_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
SQE33854.1|1550314_1551205_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
SQE33855.1|1551214_1552561_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	33.7	9.1e-55
SQE33856.1|1552674_1553775_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	8.0e-09
SQE33857.1|1553777_1554455_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQE33858.1|1554585_1555692_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQE33859.1|1555915_1557715_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	1626816	1635859	2702202	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQE33930.1|1626816_1627335_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
SQE33931.1|1627356_1629630_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.3	4.7e-64
SQE33932.1|1629832_1632112_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQE33933.1|1632386_1632647_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQE33934.1|1632665_1633805_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	2.7e-84
SQE33935.1|1633827_1634853_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQE33936.1|1634854_1635859_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	1763340	1840313	2702202	protease,bacteriocin,tRNA	Staphylococcus_phage(95.0%)	75	NA	NA
SQE34045.1|1763340_1766352_-	FmtB-protein	NA	A0A2H4PQU6	Staphylococcus_phage	55.6	3.1e-135
SQE34046.1|1766680_1766992_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	8.2e-52
SQE34047.1|1767013_1769431_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.0	0.0e+00
SQE34048.1|1769719_1770901_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	2.1e-217
SQE34049.1|1771010_1771964_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
SQE34050.1|1771960_1772524_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	5.4e-102
SQE34051.1|1772643_1773045_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQE34052.1|1773616_1774444_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQE34053.1|1774677_1775679_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	3.4e-184
SQE34054.1|1775800_1776265_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
SQE34055.1|1776277_1777459_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	3.3e-226
SQE34056.1|1777469_1778102_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
SQE34057.1|1778108_1779152_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.0e-194
SQE34058.1|1779632_1781135_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
SQE34059.1|1781656_1781971_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
SQE34060.1|1781970_1783263_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	6.3e-223
SQE34061.1|1783280_1783676_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	97.7	2.6e-71
SQE34062.1|1784076_1784931_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQE34063.1|1785206_1785431_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQE34064.1|1785629_1786100_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	2.2e-80
SQE34065.1|1786212_1786656_+	comK family protein	NA	NA	NA	NA	NA
SQE34066.1|1786642_1787086_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
SQE34067.1|1787383_1787638_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
SQE34068.1|1788442_1789156_-	Transaldolase	NA	M1PR54	Cyanophage	34.8	2.1e-18
SQE34069.1|1789413_1789716_+	membrane protein	NA	NA	NA	NA	NA
SQE34070.1|1789971_1790337_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	8.1e-59
SQE34071.1|1790333_1790687_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
SQE34072.1|1790935_1791769_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.7e-157
SQE34073.1|1791979_1792888_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.3e-137
SQE34074.1|1793012_1794206_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
SQE34075.1|1794576_1796169_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
SQE34076.1|1796465_1797236_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	2.3e-140
SQE34077.1|1797216_1797696_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	1.6e-83
SQE34078.1|1797755_1798013_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
SQE34079.1|1798009_1799011_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.4	2.2e-183
SQE34080.1|1799015_1800494_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	1.8e-282
SQE34081.1|1800652_1800874_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	97.3	5.8e-36
SQE34082.1|1801445_1802060_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	62.7	2.9e-24
SQE34083.1|1802140_1803136_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	1.5e-70
SQE34084.1|1803211_1803838_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	3.1e-90
SQE34085.1|1803878_1804220_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	2.3e-55
SQE34086.1|1804320_1804893_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
SQE34087.1|1805225_1805669_-	exported protein	NA	NA	NA	NA	NA
SQE34088.1|1805668_1806118_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE34089.1|1806117_1806312_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE34090.1|1806308_1806560_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE34091.1|1806559_1807003_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQE34092.1|1807407_1809945_+	hyaluronate lyase	NA	NA	NA	NA	NA
SQE34093.1|1810070_1810448_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
SQE34094.1|1810969_1813165_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQT3	Staphylococcus_phage	97.6	0.0e+00
SQE34095.1|1813303_1813540_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQV1	Staphylococcus_phage	98.7	5.6e-37
SQE34096.1|1813722_1814271_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQV1	Staphylococcus_phage	94.4	3.3e-80
SQE34097.1|1814296_1814638_-	[Genomic island nu Sa beta2]	NA	NA	NA	NA	NA
SQE34098.1|1815840_1816419_-	type I restriction-modification enzyme, S subunit, EcoA family protein	NA	A0A2H4PQP5	Staphylococcus_phage	97.9	2.8e-106
SQE34099.1|1816635_1817016_-	Probable specificity determinant HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	96.8	1.2e-65
SQE34100.1|1817032_1818589_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.7e-286
SQE34101.1|1818951_1819671_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	94.1	9.9e-125
SQE34102.1|1819839_1820556_-	serine proteinase	NA	A0A2H4PQN5	Staphylococcus_phage	60.5	2.5e-80
SQE34103.1|1820680_1821400_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	91.6	5.1e-121
SQE34104.1|1821457_1822180_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	95.4	1.4e-126
SQE34105.1|1822304_1822856_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.6	1.5e-96
SQE34106.1|1823963_1824542_+	Uncharacterised protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.2e-48
SQE34107.1|1825015_1825714_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	93.5	7.1e-112
SQE34108.1|1825710_1826472_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	95.7	2.5e-126
SQE34109.1|1826468_1827161_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	97.0	5.4e-120
SQE34110.1|1827183_1828557_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	94.3	2.8e-245
SQE34111.1|1828566_1829085_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	97.7	1.9e-93
SQE34112.1|1829100_1830345_-	Epidermin biosynthesis protein epiC	NA	A0A2H4PQH9	Staphylococcus_phage	87.2	9.5e-208
SQE34113.1|1830337_1833331_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	92.1	0.0e+00
SQE34114.1|1833395_1833539_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
SQE34115.1|1834272_1834416_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	2.0e-13
SQE34116.1|1834655_1835639_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
SQE34117.1|1835640_1836576_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	2.5e-173
SQE34118.1|1838202_1838799_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE34119.1|1838966_1840313_+	exported protein	NA	M1NRY5	Streptococcus_phage	50.7	1.6e-64
>prophage 11
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	1988599	2022546	2702202	transposase,protease,terminase,integrase	Staphylococcus_phage(60.87%)	38	1982728:1982747	1999154:1999173
1982728:1982747	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
SQE34253.1|1988599_1988884_-|terminase	terminase, superantigen-encoding pathogenicity islands SaPI	terminase	Q4ZE85	Staphylococcus_phage	100.0	1.5e-44
SQE34254.1|1988880_1989222_-|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	92.9	1.9e-54
SQE34255.1|1989224_1989800_-	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	96.0	3.5e-88
SQE34256.1|1989802_1990021_-	hypothetical mobile element-associated protein	NA	NA	NA	NA	NA
SQE34257.1|1990038_1990617_-|transposase	transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	37.4	2.2e-26
SQE34258.1|1990628_1990970_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
SQE34259.1|1991486_1992128_-|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	93.0	2.1e-110
SQE34260.1|1992124_1992505_-	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	97.6	4.5e-68
SQE34261.1|1992813_1994523_-	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	92.4	5.9e-301
SQE34262.1|1994536_1995406_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	95.2	3.4e-164
SQE34263.1|1995472_1995790_-	mobile element-associated DUF1474-containing protein, putative	NA	A0A1W6JQH0	Staphylococcus_phage	53.4	7.1e-19
SQE34264.1|1995790_1996150_-	pathogenicity island protein	NA	NA	NA	NA	NA
SQE34265.1|1996151_1996364_-	mobile element-associated protein	NA	A0A1W6JPA6	Staphylococcus_phage	72.1	2.4e-18
SQE34266.1|1996356_1996503_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
SQE34267.1|1996499_1996817_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
SQE34268.1|1996820_1997027_-	SaPI1 Orf21	NA	Q4ZE78	Staphylococcus_phage	71.6	6.4e-21
SQE34269.1|1997178_1997901_+	SaPI1 Orf22	NA	Q4ZE79	Staphylococcus_phage	38.2	3.3e-35
SQE34270.1|1997914_1999087_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	1.7e-214
SQE34271.1|1999155_2000772_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
1999154:1999173	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
SQE34272.1|2000847_2001132_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
SQE34273.1|2001306_2002050_+	abortive infection protein	NA	NA	NA	NA	NA
SQE34274.1|2002074_2003373_-	membrane anchored Ser-Asp rich fibrinogen-binding protein	NA	NA	NA	NA	NA
SQE34275.1|2003569_2004196_+	nitroreductase family protein	NA	NA	NA	NA	NA
SQE34276.1|2004573_2005359_+	Aliphatic amidase amiE	NA	NA	NA	NA	NA
SQE34277.1|2006272_2006890_+	Accessory gene regulator protein B 4	NA	NA	NA	NA	NA
SQE34278.1|2006892_2007036_+	Accessory gene regulator D (pheromone precursor, type II)	NA	NA	NA	NA	NA
SQE34279.1|2007065_2008349_+	accessory gene regulator C	NA	NA	NA	NA	NA
SQE34280.1|2008367_2009084_+	accessory gene regulator protein A	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	1.0e-25
SQE34281.1|2009450_2010410_-	Fructokinase	NA	NA	NA	NA	NA
SQE34282.1|2010406_2011891_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.4	4.4e-18
SQE34283.1|2012039_2012990_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA	NA
SQE34284.1|2013170_2014421_-	ammonium transporter family protein	NA	H8ZJB2	Ostreococcus_tauri_virus	31.5	1.8e-41
SQE34285.1|2014629_2014854_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE34286.1|2014913_2015993_-	putative transport system permease protein	NA	NA	NA	NA	NA
SQE34287.1|2016297_2016933_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA	NA
SQE34288.1|2017185_2019114_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
SQE34289.1|2019482_2021093_+	MutS-related protein, family 1	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	1.7e-20
SQE34290.1|2021520_2022546_-|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	40.6	5.8e-62
>prophage 12
LS483300	Staphylococcus aureus strain NCTC7485 genome assembly, chromosome: 1	2702202	2421258	2455281	2702202	transposase,holin	Bacillus_phage(28.57%)	33	NA	NA
SQE34671.1|2421258_2421954_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
SQE34672.1|2421953_2422895_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
SQE34673.1|2422911_2423547_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
SQE34674.1|2423543_2424770_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	51.6	1.1e-19
SQE34675.1|2425439_2425817_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQE34676.1|2425873_2426038_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQE34677.1|2426217_2427855_+	Amino acid permease	NA	NA	NA	NA	NA
SQE34678.1|2428082_2429435_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
SQE34679.1|2429496_2430684_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
SQE34680.1|2431079_2431856_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQE34681.1|2431848_2432511_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	W8CYL7	Bacillus_phage	33.9	4.8e-17
SQE34682.1|2432856_2433933_-	endoglucanase M	NA	NA	NA	NA	NA
SQE34683.1|2434288_2434555_-	addiction module toxin	NA	NA	NA	NA	NA
SQE34684.1|2434554_2434812_-	prevent-host-death family protein	NA	NA	NA	NA	NA
SQE34685.1|2435170_2435626_+	lipoprotein	NA	NA	NA	NA	NA
SQE34686.1|2435793_2437371_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
SQE34687.1|2437564_2438314_+	membrane protein	NA	NA	NA	NA	NA
SQE34688.1|2438537_2439731_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
SQE34689.1|2439742_2440492_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
SQE34690.1|2440484_2441300_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	29.3	4.0e-13
SQE34691.1|2441296_2442166_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
SQE34692.1|2442162_2443098_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
SQE34693.1|2443110_2444709_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
SQE34694.1|2444851_2446153_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE34695.1|2446145_2446964_-	nicotianamine synthase	NA	NA	NA	NA	NA
SQE34696.1|2446974_2447796_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
SQE34697.1|2448485_2449253_-	beta-lactamase	NA	NA	NA	NA	NA
SQE34698.1|2449353_2450172_-	short chain dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	1.9e-10
SQE34699.1|2450405_2451944_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
SQE34700.1|2452055_2452478_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE34701.1|2452933_2453353_-	membrane protein	NA	NA	NA	NA	NA
SQE34702.1|2453606_2454302_-	Short-chain alcohol dehydrogenase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
SQE34703.1|2454588_2455281_+|transposase	transposase (pseudogene)	transposase	NA	NA	NA	NA
