The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	47909	53403	4705041	transposase,integrase	Enterobacteria_phage(83.33%)	8	51446:51460	62686:62700
SQE48451.1|47909_49553_-	putative prophage DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.3	0.0e+00
SQE48455.1|49708_49978_-	putative prophage protein	NA	Q7M298	Enterobacteria_phage	100.0	1.4e-47
SQE48458.1|49970_50258_-	prophage derepression protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
SQE48461.1|50887_51754_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
51446:51460	attL	GCTGAACTTCCGGGA	NA	NA	NA	NA
SQE48463.1|51750_52050_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE48465.1|52077_52365_-	prophage regulatory protein	NA	Q7M299	Enterobacteria_phage	100.0	1.2e-41
SQE48467.1|52994_53177_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE48469.1|53097_53403_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	81.2	1.1e-37
62686:62700	attR	GCTGAACTTCCGGGA	NA	NA	NA	NA
>prophage 2
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	1070819	1084002	4705041	tRNA	Escherichia_phage(50.0%)	12	NA	NA
SQE52351.1|1070819_1071581_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
SQE52352.1|1071574_1072201_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
SQE52353.1|1072340_1073480_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
SQE52354.1|1073542_1074535_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
SQE52355.1|1074628_1075993_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
SQE52356.1|1076081_1076858_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
SQE52357.1|1076862_1077501_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
SQE52358.1|1077497_1078760_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.0	8.3e-135
SQE52359.1|1078756_1079665_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
SQE52360.1|1079860_1080628_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
SQE52361.1|1080678_1081335_-	serine/threonine-specific protein phosphatase 2	NA	A0A077SLQ6	Escherichia_phage	47.0	6.6e-51
SQE52362.1|1081440_1084002_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 3
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	1119083	1198802	4705041	capsid,tRNA,integrase,terminase,tail,plate,transposase,portal	Salmonella_phage(66.04%)	92	1126777:1126793	1184813:1184829
SQE52399.1|1119083_1121714_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A2K9L1X7	Tupanvirus	38.6	5.5e-80
SQE52400.1|1121948_1122134_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
SQE52401.1|1122130_1122220_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE52402.1|1123592_1124159_+	putative phosphatase	NA	NA	NA	NA	NA
SQE52403.1|1124155_1124584_+	inner membrane protein	NA	NA	NA	NA	NA
SQE52404.1|1124656_1126213_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
SQE52405.1|1126362_1126878_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
1126777:1126793	attL	GCGCAGGATATTGCGCG	NA	NA	NA	NA
SQE52406.1|1126941_1128480_-	multidrug resistance protein B	NA	NA	NA	NA	NA
SQE52407.1|1128496_1129669_-	multidrug resistance protein A	NA	NA	NA	NA	NA
SQE52408.1|1129795_1130326_-	MarR-family transcriptional repressor	NA	NA	NA	NA	NA
SQE52409.1|1130416_1130752_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQE52410.1|1130741_1131479_-	AzlC-like membrane protein	NA	NA	NA	NA	NA
SQE52411.1|1131602_1132787_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE52412.1|1132978_1133971_-	glycine betaine/L-proline ABC transporter, substrate-binding protein	NA	NA	NA	NA	NA
SQE52413.1|1134028_1135093_-	glycine betaine/L-proline ABC transporter permease	NA	NA	NA	NA	NA
SQE52414.1|1135085_1136288_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
SQE52415.1|1136641_1137601_-	ribonucleoside-diphosphate reductase 2 beta chain	NA	R4TBI6	Mycobacterium_phage	71.8	3.5e-133
SQE52416.1|1137610_1139755_-	ribonucleoside-diphosphate reductase 2 alpha chain	NA	A8E2R1	Enterococcus_phage	48.5	1.7e-196
SQE52417.1|1139727_1140138_-	ribonucleotide reductase stimulatory protein	NA	A0A142F1R4	Bacillus_phage	44.4	4.6e-18
SQE52418.1|1140134_1140380_-	glutaredoxin-like protein	NA	Q5K5J3	Oenococcus_phage	35.3	1.8e-06
SQE52419.1|1140627_1140957_-	protein	NA	NA	NA	NA	NA
SQE52420.1|1141108_1141453_+	protein	NA	NA	NA	NA	NA
SQE52421.1|1141489_1141939_-	inner membrane protein	NA	NA	NA	NA	NA
SQE52422.1|1142607_1143012_+	DNA-binding protein	NA	NA	NA	NA	NA
SQE52423.1|1143058_1143583_-	inner membrane protein with hydrolase activity	NA	NA	NA	NA	NA
SQE52424.1|1143592_1143892_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
SQE52425.1|1144074_1144233_+	membrane protein	NA	NA	NA	NA	NA
SQE52426.1|1144316_1144766_+	putative peptidoglycan-binding protein	NA	A0A090DBR9	Clostridium_phage	39.5	2.0e-06
SQE52427.1|1144766_1145429_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE52428.1|1145449_1146850_-	gamma-aminobutyrate transporter	NA	NA	NA	NA	NA
SQE52429.1|1147087_1148368_-	4-aminobutyrate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	30.1	1.9e-33
SQE52430.1|1148381_1149830_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQE52431.1|1149852_1151121_-	hydroxyglutarate oxidase	NA	NA	NA	NA	NA
SQE52432.1|1151139_1152117_-	Protein CsiD	NA	NA	NA	NA	NA
SQE52433.1|1152453_1154355_-	alpha-amylase	NA	NA	NA	NA	NA
SQE52434.1|1154373_1154706_-	alpha-amylase	NA	NA	NA	NA	NA
SQE52435.1|1154821_1155178_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	92.5	4.4e-33
SQE52436.1|1155134_1156286_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
SQE52437.1|1156577_1157192_+|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	93.1	2.7e-107
SQE52438.1|1157207_1157495_-|integrase	phage integrase	integrase	A0A1B5FPC6	Escherichia_phage	89.5	1.5e-44
SQE52439.1|1157823_1158849_-	Fels-2 prophage protein	NA	A0A1S6L016	Salmonella_phage	95.3	1.4e-193
SQE52440.1|1158850_1159483_-	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	90.5	6.9e-106
SQE52441.1|1159602_1159851_+	putative phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	71.6	3.4e-24
SQE52442.1|1159883_1160393_+	phage regulatory protein CII	NA	E5G6L3	Salmonella_phage	95.9	7.8e-84
SQE52443.1|1160400_1160601_+	Protein of uncharacterised function (DUF2724)	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
SQE52444.1|1160564_1160906_+	Uncharacterised protein	NA	E5G6L5	Salmonella_phage	92.0	6.9e-52
SQE52445.1|1160973_1161207_+	Protein of uncharacterised function (DUF2732)	NA	E5G6L6	Salmonella_phage	96.1	7.0e-32
SQE52446.1|1161206_1161434_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
SQE52447.1|1161430_1162288_+	site-specific DNA-methyltransferase	NA	E5G6L8	Salmonella_phage	97.2	1.3e-160
SQE52448.1|1162284_1164699_+	putative replication protein for prophage	NA	E5G6L9	Salmonella_phage	97.9	0.0e+00
SQE52449.1|1164852_1165041_+	Uncharacterised protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
SQE52450.1|1165051_1165285_+	Prophage protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
SQE52451.1|1165670_1166711_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	88.4	4.5e-171
SQE52452.1|1166710_1168477_-	Terminase, ATPase subunit	NA	A0A1S6KZW3	Salmonella_phage	99.7	0.0e+00
SQE52453.1|1168619_1169453_+|capsid	capsid scaffolding	capsid	A0A1S6KZW9	Salmonella_phage	90.6	2.2e-123
SQE52454.1|1169469_1170528_+|capsid	P2 family phage major capsid protein	capsid	E5G6M6	Salmonella_phage	93.4	2.9e-181
SQE52455.1|1170531_1171182_+|terminase	small terminase subunit	terminase	E5G6M7	Salmonella_phage	95.8	1.5e-111
SQE52456.1|1171277_1171742_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.4e-76
SQE52457.1|1171741_1171945_+|tail	tail X family protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
SQE52458.1|1171948_1172164_+	putative secretory protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
SQE52459.1|1172144_1172657_+	glycoside hydrolase family protein	NA	E5G6N1	Salmonella_phage	91.7	2.0e-87
SQE52460.1|1172658_1173036_+	membrane protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
SQE52461.1|1173032_1173461_+	regulatory protein	NA	E5G6N2	Salmonella_phage	73.8	9.3e-46
SQE52462.1|1173556_1173988_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	92.3	6.4e-71
SQE52463.1|1173980_1174427_+|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	84.9	1.9e-62
SQE52464.1|1174495_1175074_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	87.0	4.2e-94
SQE52465.1|1175070_1175430_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	85.7	2.8e-51
SQE52466.1|1175416_1176325_+|plate	Baseplate assembly protein GpJ	plate	A0A1S6KZY6	Salmonella_phage	90.1	3.0e-142
SQE52467.1|1176317_1176923_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	4.4e-110
SQE52468.1|1176919_1178317_+|tail	phage variable tail fiber protein	tail	M1TAS6	Escherichia_phage	76.1	1.8e-151
SQE52469.1|1178322_1178742_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	40.3	7.2e-19
SQE52470.1|1178713_1178971_-|tail	tail assembly chaperone gp38	tail	A0A0F7LDZ0	Escherichia_phage	69.9	2.0e-27
SQE52471.1|1179661_1180834_+|tail	tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	89.7	1.3e-203
SQE52472.1|1180843_1181359_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.3	2.1e-89
SQE52473.1|1181413_1181716_+|tail	tail E family protein	tail	A0A1S6KZZ9	Salmonella_phage	88.0	1.6e-39
SQE52474.1|1181842_1184920_+|tail	TP901 family phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.6	0.0e+00
1184813:1184829	attR	GCGCAGGATATTGCGCG	NA	NA	NA	NA
SQE52475.1|1184916_1185402_+|tail	bacteriophage tail protein GpU	tail	E5G6Q2	Salmonella_phage	81.2	1.7e-67
SQE52476.1|1185398_1186499_+	Late control protein D protein	NA	A0A1S6KZZ5	Salmonella_phage	88.5	3.4e-177
SQE52477.1|1186812_1187295_-	Uncharacterised protein	NA	Q19UP0	Mannheimia_phage	33.7	6.0e-17
SQE52478.1|1187995_1188478_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
SQE52479.1|1188609_1189086_+	putative oligoketide cyclase/lipid transport protein	NA	NA	NA	NA	NA
SQE52480.1|1189075_1189366_+	RnfH family protein	NA	NA	NA	NA	NA
SQE52481.1|1189427_1189769_-	putative outer membrane assembly lipoprotein	NA	NA	NA	NA	NA
SQE52482.1|1189917_1191579_-	DNA repair protein	NA	NA	NA	NA	NA
SQE52483.1|1191664_1192543_-	inorganic polyphosphate/ATP-NAD kinase	NA	NA	NA	NA	NA
SQE52484.1|1192665_1193259_+	heat shock protein	NA	NA	NA	NA	NA
SQE52485.1|1193313_1194555_-	inner membrane protein, UPF0053 family	NA	NA	NA	NA	NA
SQE52486.1|1194620_1195487_-	putative magnesium transport protein	NA	NA	NA	NA	NA
SQE52487.1|1195578_1196940_+	signal recognition particle protein	NA	NA	NA	NA	NA
SQE52488.1|1197188_1197437_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SQE52489.1|1197455_1198004_+	16S rRNA-processing protein RimM	NA	NA	NA	NA	NA
SQE52490.1|1198034_1198802_+|tRNA	tRNA (guanine-1-)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 4
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	1325016	1336711	4705041		Escherichia_phage(57.14%)	8	NA	NA
SQE52596.1|1325016_1328283_+	DEAD/DEAH box helicase	NA	A0A2K5B2B9	Erysipelothrix_phage	45.8	6.4e-264
SQE52597.1|1328275_1329142_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE52598.1|1329186_1331115_+	site-specific DNA-methyltransferase, component of type III restriction-modification system	NA	A0A2K5B2C1	Erysipelothrix_phage	42.0	6.3e-126
SQE52599.1|1331116_1334155_+	Type III restriction-modification system site-specific deoxyribonuclease	NA	A0A2K5B256	Erysipelothrix_phage	43.4	4.6e-216
SQE52600.1|1334963_1335503_-	Uncharacterised protein	NA	G9L6F0	Escherichia_phage	93.9	8.4e-44
SQE52601.1|1335518_1336034_-	putative lipoprotein	NA	G9L6F1	Escherichia_phage	100.0	1.0e-62
SQE52602.1|1336349_1336523_-	protein	NA	G9L6F2	Escherichia_phage	100.0	6.8e-24
SQE52603.1|1336558_1336711_+	Uncharacterised protein	NA	G9L6F3	Escherichia_phage	96.0	1.7e-18
>prophage 5
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	1738163	1747605	4705041		Enterobacteria_phage(85.71%)	10	NA	NA
SQE52961.1|1738163_1739090_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
SQE52962.1|1739094_1739826_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE52963.1|1739806_1739914_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQE52964.1|1739973_1740705_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
SQE52965.1|1740926_1742612_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
SQE52966.1|1742608_1743328_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
SQE52967.1|1743374_1743845_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
SQE52968.1|1743885_1744347_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
SQE52969.1|1744471_1746472_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
SQE52970.1|1746468_1747605_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 6
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	1870686	1911021	4705041	transposase	Shigella_phage(28.57%)	35	NA	NA
SQE53073.1|1870686_1871043_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	92.5	4.4e-33
SQE53074.1|1870999_1872151_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
SQE53075.1|1872442_1873057_+|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	93.1	2.7e-107
SQE53076.1|1874067_1874610_+	bifunctional adenosylcobalamin biosynthesis protein [includes adenosylcobinamide kinase; adenosylcobinamide-phosphate guanylyltransferase]	NA	NA	NA	NA	NA
SQE53077.1|1874606_1875350_+	cobalamin synthase	NA	NA	NA	NA	NA
SQE53078.1|1875361_1876441_+	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE53079.1|1876502_1877438_+	ErfK/YbiS/YcfS/YnhG family protein	NA	NA	NA	NA	NA
SQE53080.1|1877894_1878812_+	Nitrogen assimilation regulatory protein nac	NA	NA	NA	NA	NA
SQE53081.1|1878913_1879864_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE53082.1|1880170_1881343_+	multidrug efflux system	NA	NA	NA	NA	NA
SQE53083.1|1882253_1882970_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE53084.1|1883312_1884767_-	AMP nucleosidase	NA	NA	NA	NA	NA
SQE53085.1|1884868_1886185_-	shikimate transporter	NA	NA	NA	NA	NA
SQE53086.1|1886499_1887552_+	ADP-heptose--LPS heptosyltransferase-like protein	NA	NA	NA	NA	NA
SQE53087.1|1887677_1888292_-|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	93.1	2.7e-107
SQE53088.1|1888546_1888825_-|transposase	ISEhe3, transposase orfA	transposase	U5P4I9	Shigella_phage	92.5	4.5e-33
SQE53089.1|1888847_1895327_-	putative invasin	NA	NA	NA	NA	NA
SQE53090.1|1895340_1895490_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53091.1|1895789_1896587_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
SQE53092.1|1897339_1897870_-	cytochrome	NA	A0A0U2QLA7	Escherichia_phage	99.1	3.6e-55
SQE53093.1|1898212_1898884_-	metal ABC transporter substrate binding protein	NA	NA	NA	NA	NA
SQE53094.1|1899119_1899755_-	sulfite oxidase subunit YedZ	NA	NA	NA	NA	NA
SQE53095.1|1899755_1900760_-	putative oxidoreductase	NA	NA	NA	NA	NA
SQE53096.1|1900868_1901282_-	transthyretin-like protein	NA	NA	NA	NA	NA
SQE53097.1|1901303_1902086_+	transcriptional regulatory protein YedW	NA	W8CYM9	Bacillus_phage	35.2	4.8e-32
SQE53098.1|1902085_1903444_+	two-component sensor kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.0	8.7e-05
SQE53099.1|1903551_1904403_-	chaperone protein	NA	NA	NA	NA	NA
SQE53100.1|1904993_1905779_-	putative outer membrane pore protein	NA	Q1MVN1	Enterobacteria_phage	53.6	1.3e-64
SQE53101.1|1905870_1906737_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE53102.1|1906733_1907033_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE53103.1|1907079_1907418_-	putative outer membrane pore protein	NA	Q1MVN1	Enterobacteria_phage	57.5	2.4e-25
SQE53104.1|1908047_1908350_+	inner membrane protein YedR	NA	NA	NA	NA	NA
SQE53105.1|1908389_1909085_+	putative phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.5	1.6e-07
SQE53106.1|1909151_1910570_+	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	54.8	3.0e-101
SQE53107.1|1910550_1911021_+	patch repair protein	NA	E5E3X5	Burkholderia_phage	47.6	2.0e-33
>prophage 7
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	2269737	2378962	4705041	transposase,protease,integrase	Escherichia_phage(26.92%)	107	2304419:2304435	2318959:2318975
SQE53465.1|2269737_2270559_-|protease	putative protease	protease	NA	NA	NA	NA
SQE53466.1|2270834_2271143_-	acid shock protein	NA	NA	NA	NA	NA
SQE53467.1|2271567_2272821_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE53468.1|2272927_2273821_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE53469.1|2273955_2275176_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
SQE53470.1|2275300_2275996_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
SQE53471.1|2275948_2277205_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
SQE53472.1|2277400_2278015_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
SQE53473.1|2278057_2278912_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
SQE53474.1|2278913_2279531_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
SQE53475.1|2279541_2281938_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.5	8.2e-208
SQE53476.1|2282025_2283135_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	47.1	1.1e-85
SQE53477.1|2283366_2284746_+|integrase	integrase	integrase	NA	NA	NA	NA
SQE53478.1|2285073_2285574_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53479.1|2285445_2285706_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53480.1|2286083_2286176_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53481.1|2286295_2287054_+	DNA-binding protein	NA	B5AX29	Iodobacteriophage	37.5	1.2e-11
SQE53482.1|2287055_2287253_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53483.1|2287364_2287856_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53484.1|2287931_2288918_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53485.1|2289239_2289395_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53486.1|2289587_2291045_-	dimethyl sulfoxide reductase chain YnfE	NA	A0A077SK27	Escherichia_phage	50.1	5.1e-120
SQE53487.1|2291243_2291549_-	protein	NA	NA	NA	NA	NA
SQE53488.1|2291620_2292367_+	lipoprotein	NA	NA	NA	NA	NA
SQE53489.1|2292369_2292930_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
SQE53490.1|2292964_2293306_-	protein	NA	NA	NA	NA	NA
SQE53491.1|2293440_2293767_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
SQE53492.1|2293972_2295187_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.2	1.1e-46
SQE53493.1|2295198_2296218_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
SQE53494.1|2296275_2297643_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
SQE53495.1|2297731_2299192_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.4	1.2e-41
SQE53496.1|2299226_2299430_-	selenium carrying protein	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
SQE53497.1|2299606_2300293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE53498.1|2300381_2301128_-	NADP-dependent L-serine/L-allo-threonine dehydrogenase	NA	NA	NA	NA	NA
SQE53499.1|2301264_2303310_+	dipeptidyl carboxypeptidase II	NA	NA	NA	NA	NA
SQE53500.1|2303354_2303585_-	competence damage-inducible protein A	NA	NA	NA	NA	NA
SQE53501.1|2303696_2303996_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE53502.1|2303992_2304859_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
2304419:2304435	attL	GAAGGCTGGCTGTATCT	NA	NA	NA	NA
SQE53503.1|2304946_2306269_+	putative type I methylase	NA	A0A2H4PQP4	Staphylococcus_phage	41.8	8.5e-82
SQE53504.1|2306258_2307443_+	putative restriction-modification DNA specificity domain protein	NA	NA	NA	NA	NA
SQE53505.1|2307439_2308123_+	metal-binding protein	NA	NA	NA	NA	NA
SQE53506.1|2308175_2311460_+	putative type I restriction enzyme HsdR protein	NA	A0A220A398	Liberibacter_phage	27.0	8.1e-65
SQE53507.1|2311456_2312212_+	putative hydrolase	NA	NA	NA	NA	NA
SQE53508.1|2312520_2313081_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53509.1|2313294_2313510_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE53510.1|2313683_2314187_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53511.1|2314179_2316717_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE53512.1|2316713_2318384_-|integrase	Phage integrase	integrase	NA	NA	NA	NA
SQE53513.1|2318519_2319134_-|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	92.6	3.6e-107
2318959:2318975	attR	AGATACAGCCAGCCTTC	NA	NA	NA	NA
SQE53514.1|2319388_2319667_-|transposase	ISEhe3, transposase orfA	transposase	U5P4I9	Shigella_phage	92.5	4.5e-33
SQE53515.1|2319980_2321303_-	protein hipA	NA	NA	NA	NA	NA
SQE53516.1|2321302_2321569_-	DNA-binding transcriptional regulator HipB	NA	NA	NA	NA	NA
SQE53517.1|2321791_2323303_-	lipoprotein/autotransporter domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	49.2	2.5e-106
SQE53518.1|2323302_2327211_-	lipoprotein/autotransporter domain-containing protein	NA	NA	NA	NA	NA
SQE53519.1|2327741_2329334_-	putative carbohydrate kinase	NA	NA	NA	NA	NA
SQE53520.1|2329412_2330366_-	putative sugar-binding regulatory protein	NA	NA	NA	NA	NA
SQE53521.1|2330614_2332150_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	4.4e-21
SQE53522.1|2332143_2333172_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE53523.1|2333171_2334164_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE53524.1|2334175_2335198_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE53525.1|2335224_2336100_+	putative aldolase	NA	NA	NA	NA	NA
SQE53526.1|2336123_2336414_+	autoinducer-2 (AI-2) modifying protein LsrG	NA	NA	NA	NA	NA
SQE53527.1|2336470_2337229_+	trans-aconitate methyltransferase	NA	NA	NA	NA	NA
SQE53528.1|2337232_2338147_-	inner membrane protein	NA	NA	NA	NA	NA
SQE53529.1|2338353_2339805_-	altronate oxidoreductase	NA	NA	NA	NA	NA
SQE53530.1|2340031_2340979_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	9.6e-19
SQE53531.1|2341090_2341450_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE53532.1|2341449_2342376_-	glutaminase 2	NA	NA	NA	NA	NA
SQE53533.1|2342439_2343828_-	succinate semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQE53534.1|2343928_2344810_+	transcriptional regulator YneJ	NA	NA	NA	NA	NA
SQE53535.1|2344887_2345781_+	protein	NA	NA	NA	NA	NA
SQE53536.1|2345777_2346002_+	protein	NA	NA	NA	NA	NA
SQE53537.1|2346151_2347342_+	sugar efflux transporter	NA	NA	NA	NA	NA
SQE53538.1|2347366_2348032_-	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
SQE53539.1|2348243_2348678_+	multiple antibiotic resistance regulatory protein	NA	NA	NA	NA	NA
SQE53540.1|2348697_2349081_+	DNA-binding transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
SQE53541.1|2349112_2349331_+	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
SQE53542.1|2349361_2350261_-	amino acid metabolite efflux	NA	NA	NA	NA	NA
SQE53543.1|2350455_2351643_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE53544.1|2352083_2352974_-	putative signal transduction protein	NA	A0A127AWB9	Bacillus_phage	37.7	6.2e-20
SQE53545.1|2353228_2353621_-	stress response protein	NA	NA	NA	NA	NA
SQE53546.1|2353899_2354178_+	competence damage-inducible protein A	NA	NA	NA	NA	NA
SQE53547.1|2354174_2355041_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE53548.1|2355037_2355337_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE53549.1|2355399_2355549_-	putative type I methylase	NA	NA	NA	NA	NA
SQE53550.1|2356101_2357217_-	putative alcohol dehydrogenase	NA	NA	NA	NA	NA
SQE53551.1|2357400_2358324_+|transposase	transposase, IS903.B	transposase	Q9MCT5	Escherichia_phage	99.3	5.4e-176
SQE53552.1|2358641_2359352_+	putative type IV pilus assembly protein PilZ	NA	NA	NA	NA	NA
SQE53553.1|2359469_2360054_+	two component system sensor kinase SsrB	NA	NA	NA	NA	NA
SQE53554.1|2360195_2360912_+	putative cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
SQE53555.1|2360973_2361624_-	putative fimbrial-like protein	NA	NA	NA	NA	NA
SQE53556.1|2361638_2362613_-	putative fimbrial-like protein	NA	NA	NA	NA	NA
SQE53557.1|2362603_2365090_-	putative fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
SQE53558.1|2365101_2365803_-	putative fimbrial chaperone protein	NA	NA	NA	NA	NA
SQE53559.1|2365996_2366605_-	putative fimbrial-like protein	NA	NA	NA	NA	NA
SQE53560.1|2366944_2367322_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE53561.1|2367393_2367609_+	Insertion element protein	NA	NA	NA	NA	NA
SQE53562.1|2368012_2368309_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SQE53563.1|2368361_2368607_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53564.1|2368603_2368801_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53565.1|2368888_2372422_-	ski2-like helicase	NA	NA	NA	NA	NA
SQE53566.1|2372405_2373185_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE53567.1|2373840_2374677_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SQE53568.1|2374673_2376323_-	Calcineurin-like phosphoesterase	NA	NA	NA	NA	NA
SQE53569.1|2376591_2376930_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	100.0	4.7e-37
SQE53570.1|2376849_2378001_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
SQE53571.1|2378149_2378962_+|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	99.3	1.2e-158
>prophage 8
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	2591464	2653006	4705041	head,integrase,terminase,lysis,tail,portal,protease	Salmonella_phage(36.21%)	83	2608402:2608416	2653537:2653551
SQE58040.1|2591464_2592514_-|protease	protease	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
SQE58041.1|2592733_2593492_+	putative short chain dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.0	1.5e-06
SQE58042.1|2593488_2594079_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
SQE58043.1|2594118_2594994_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
SQE58044.1|2595206_2597102_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQE58045.1|2597129_2597750_-	putative RNA binding protein	NA	NA	NA	NA	NA
SQE58046.1|2597746_2598628_-	putative phosphoesterase	NA	NA	NA	NA	NA
SQE58047.1|2598901_2600464_+	anthranilate synthase component I	NA	NA	NA	NA	NA
SQE58048.1|2600463_2602059_+	anthranilate synthase component II [includes: glutamine amidotransferase; anthranilate phosphoribosyltransferase]	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	3.8e-52
SQE58049.1|2602062_2603421_+	tryptophan biosynthesis protein [includes: indole-3-glycero phosphate synthase; N-(5'-phospho ribosyl)anthranilate isomerase]	NA	A0A0P0IR83	Acinetobacter_phage	40.7	2.5e-36
SQE58050.1|2603432_2604626_+	tryptophan synthase	NA	NA	NA	NA	NA
SQE58051.1|2604625_2605432_+	tryptophan synthase alpha chain	NA	NA	NA	NA	NA
SQE58052.1|2605812_2605992_+	protein	NA	NA	NA	NA	NA
SQE58053.1|2606077_2606578_+	YciF protein	NA	NA	NA	NA	NA
SQE58054.1|2606623_2607130_+	protein YciE	NA	NA	NA	NA	NA
SQE58055.1|2607189_2607828_-	outer membrane protein W	NA	NA	NA	NA	NA
SQE58056.1|2608184_2608928_+	membrane protein YciC	NA	NA	NA	NA	NA
2608402:2608416	attL	AACAGCAACAAATTT	NA	NA	NA	NA
SQE58057.1|2608957_2609497_+	putative intracellular septation protein	NA	NA	NA	NA	NA
SQE58058.1|2609601_2610000_+	putative acyl-coA thioester hydrolase	NA	NA	NA	NA	NA
SQE58059.1|2610039_2610774_-	transport protein TonB	NA	NA	NA	NA	NA
SQE58060.1|2610982_2611279_+	putative cytoplasmic protein YciI	NA	NA	NA	NA	NA
SQE58061.1|2611397_2611946_-	site-specific DNA recombinase	NA	K7PJT4	Enterobacteria_phage	100.0	2.7e-98
SQE58062.1|2612372_2612792_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	40.3	7.2e-19
SQE58063.1|2612763_2613021_-|tail	tail assembly chaperone gp38	tail	A0A0F7LDZ0	Escherichia_phage	69.9	2.0e-27
SQE58064.1|2613198_2613834_-	putative bacteriophage protein	NA	A0A0M3ULD8	Salmonella_phage	50.9	3.5e-17
SQE58065.1|2613833_2614514_-	putative phage related protein	NA	A0A0M5M1K4	Salmonella_phage	80.1	1.0e-107
SQE58066.1|2614510_2615710_-	putative phage related protein	NA	A0A0M4RD32	Salmonella_phage	84.2	5.2e-187
SQE58067.1|2615710_2616064_-	putative phage related protein	NA	A0A2H4J629	uncultured_Caudovirales_phage	76.1	3.8e-45
SQE58068.1|2616066_2616720_-	putative phage related protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	63.5	2.6e-63
SQE58069.1|2616799_2616961_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58070.1|2617321_2617678_-	Uncharacterised protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	50.0	4.1e-23
SQE58071.1|2617674_2618745_-	putative phage related protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	66.7	4.1e-135
SQE58072.1|2618748_2619054_-	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	46.5	3.3e-21
SQE58073.1|2619053_2619629_-	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	66.7	2.0e-59
SQE58074.1|2619628_2621608_-	putative lytic transglycosylase, catalytic	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	45.2	2.1e-153
SQE58075.1|2621788_2622214_-	putative phage related protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	57.5	2.5e-35
SQE58076.1|2622217_2622658_-	putative phage related protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	78.1	4.4e-59
SQE58077.1|2622669_2624160_-	Protein of uncharacterised function (DUF3383)	NA	A0A0P0I492	Acinetobacter_phage	51.6	4.4e-127
SQE58078.1|2624163_2624706_-	bacteriophage protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	53.1	5.4e-51
SQE58079.1|2624698_2625085_-	putative phage related protein	NA	A0A0M3ULK0	Salmonella_phage	68.0	3.9e-43
SQE58080.1|2625084_2625591_-	bacteriophage protein	NA	NA	NA	NA	NA
SQE58081.1|2625587_2625995_-	Uncharacterised protein	NA	A0A0M5M3S2	Salmonella_phage	55.4	7.5e-29
SQE58082.1|2625963_2626329_-	bacteriophage protein	NA	NA	NA	NA	NA
SQE58083.1|2626366_2627311_-	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	60.5	2.2e-108
SQE58084.1|2627322_2627841_-	putative phage related protein	NA	A0A2H4JHM9	uncultured_Caudovirales_phage	45.9	4.6e-31
SQE58085.1|2627852_2629106_-	putative phage-like protein	NA	A0A0M4R5A6	Salmonella_phage	45.7	4.0e-81
SQE58086.1|2629273_2629471_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58087.1|2629508_2630042_-|head	head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	57.6	3.6e-47
SQE58088.1|2630103_2631582_-|portal	portal protein	portal	A0A0M4S6U1	Salmonella_phage	54.2	1.8e-149
SQE58089.1|2631594_2632800_-|terminase	phage terminase large subunit	terminase	A0A2H4JCM3	uncultured_Caudovirales_phage	65.1	3.3e-149
SQE58090.1|2632835_2633543_-|terminase	terminase small subunit	terminase	A0A1I9KFG9	Aeromonas_phage	54.2	1.0e-09
SQE58091.1|2633679_2633940_+	Uncharacterised protein	NA	A0A089FW14	Salmonella_phage	60.5	1.5e-22
SQE58092.1|2634587_2634980_-	phage lysozyme	NA	A0A192Y6H8	Salmonella_phage	57.8	6.5e-30
SQE58093.1|2634976_2635513_-	membrane-associated lysozyme; Qin prophage	NA	K7PM52	Enterobacteria_phage	88.0	5.9e-90
SQE58094.1|2635512_2635728_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	84.5	9.7e-28
SQE58095.1|2636235_2637066_-	phage antitermination protein	NA	K7PKS8	Enterobacteria_phage	81.9	1.9e-127
SQE58096.1|2637062_2637203_-	DLP12 prophage; small protein	NA	A0A0M5M7B2	Salmonella_phage	71.1	3.0e-06
SQE58097.1|2637199_2637562_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	80.3	1.1e-50
SQE58098.1|2637558_2637849_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	89.6	2.4e-45
SQE58099.1|2637851_2638058_-	putative prophage protein	NA	S4TNP0	Salmonella_phage	63.2	6.4e-21
SQE58100.1|2638057_2638657_-	phage protein	NA	K7PKS6	Enterobacteria_phage	90.5	4.4e-102
SQE58101.1|2638691_2638940_-	Uncharacterised protein	NA	K7PHG9	Enterobacteria_phage	97.6	8.8e-41
SQE58102.1|2639057_2639303_-	DNA-damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	98.7	6.9e-38
SQE58103.1|2639782_2640388_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58104.1|2641045_2641426_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58105.1|2641670_2641784_-	endodeoxyribonuclease	NA	A0A192Y6E0	Salmonella_phage	71.4	2.2e-07
SQE58106.1|2641841_2642399_-	Eaa prophage protein	NA	S4TSR6	Salmonella_phage	80.6	1.3e-44
SQE58107.1|2642607_2642802_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58108.1|2642798_2643137_-	Bacterial protein of uncharacterised function (DUF977)	NA	H6WRX9	Salmonella_phage	44.6	2.5e-14
SQE58109.1|2643139_2644051_-	replication protein 15 (O)	NA	H6WRX7	Salmonella_phage	72.5	1.2e-119
SQE58110.1|2644034_2644139_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58111.1|2644135_2644693_-	bacteriophage regulatory protein CII	NA	K7PJT7	Enterobacteria_phage	41.1	6.4e-23
SQE58112.1|2644704_2644923_-	antirepressor protein Cro	NA	A0A0M4QX15	Salmonella_phage	64.8	1.5e-20
SQE58113.1|2644995_2645415_+	regulator	NA	A0A0M4R5D1	Salmonella_phage	77.1	3.1e-46
SQE58114.1|2645479_2645761_+	Uncharacterised protein	NA	A4KWR2	Enterobacteria_phage	75.3	2.2e-32
SQE58115.1|2645767_2646289_+	Uncharacterised protein	NA	A4KWR1	Enterobacteria_phage	82.2	3.4e-10
SQE58116.1|2646744_2646951_+	protein KiL	NA	K7PM31	Enterobacteria_phage	97.1	7.3e-33
SQE58117.1|2646962_2647124_+	Rac prophage; zinc-binding protein	NA	K7PGY4	Enterobacteria_phage	55.8	1.0e-10
SQE58118.1|2647262_2648963_+	Exodeoxyribonuclease VIII from bacteriophage origin	NA	K7PJT5	Enterobacteria_phage	93.8	7.4e-280
SQE58119.1|2648987_2650172_+	putative phage exodeoxyribonuclease	NA	K7P6V4	Enterobacteria_phage	100.0	1.1e-189
SQE58120.1|2650180_2651296_+	putative enterohemolysin	NA	K7P7N5	Enterobacteria_phage	100.0	1.0e-205
SQE58121.1|2651334_2651577_+	Uncharacterised protein	NA	K7PHF4	Enterobacteria_phage	100.0	4.0e-38
SQE58122.1|2651812_2653006_-|integrase	integrase	integrase	K7PGY1	Enterobacteria_phage	100.0	1.3e-235
2653537:2653551	attR	AACAGCAACAAATTT	NA	NA	NA	NA
>prophage 9
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	2842583	2889058	4705041	transposase	Bacillus_phage(22.22%)	42	NA	NA
SQE58313.1|2842583_2842961_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE58314.1|2843005_2843281_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE58315.1|2843309_2843528_-	inner membrane protein	NA	NA	NA	NA	NA
SQE58316.1|2843524_2843848_-	(acyl-carrier-protein) S-malonyltransferase-like protein	NA	NA	NA	NA	NA
SQE58317.1|2843933_2844233_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE58318.1|2844229_2845096_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE58319.1|2845136_2846495_-	putative diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.2	1.9e-20
SQE58320.1|2847081_2849505_+	outer membrane protein PgaA	NA	NA	NA	NA	NA
SQE58321.1|2849513_2851532_+	lipoprotein YcdR	NA	NA	NA	NA	NA
SQE58322.1|2851524_2852850_+	N-glycosyltransferase	NA	NA	NA	NA	NA
SQE58323.1|2852851_2853265_+	PGA biosynthesis protein	NA	NA	NA	NA	NA
SQE58324.1|2853314_2854379_-	protein PhoH (phosphate starvation-inducible protein)	NA	R4II13	Cronobacter_phage	76.7	1.1e-90
SQE58325.1|2854723_2855995_-	putative peroxidase	NA	NA	NA	NA	NA
SQE58326.1|2856000_2857128_-	inactive ferrous ion transporter periplasmic protein EfeO	NA	NA	NA	NA	NA
SQE58327.1|2857185_2858016_-	ferrous iron permease	NA	NA	NA	NA	NA
SQE58328.1|2858558_2860067_-	sodium/proline symporter (proline permease)	NA	NA	NA	NA	NA
SQE58329.1|2860489_2864452_+	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
SQE58330.1|2864491_2865130_-	transcriptional regulator YcdC	NA	NA	NA	NA	NA
SQE58331.1|2865417_2866509_+	monooxygenase ycdM	NA	NA	NA	NA	NA
SQE58332.1|2866505_2867201_+	isochorismatase family protein ycdL	NA	NA	NA	NA	NA
SQE58333.1|2867212_2867599_+	pyrimidine utilization protein C	NA	NA	NA	NA	NA
SQE58334.1|2867606_2868407_+	alternative pyrimidine degradation pathway protein	NA	NA	NA	NA	NA
SQE58335.1|2868416_2869007_+	putative NADH dehydrogenase/NAD(P)H nitroreductase (pyrimidine utilization protein E)	NA	NA	NA	NA	NA
SQE58336.1|2869017_2869512_+	oxidoreductase, flavin:NADH component	NA	Q9KX93	Enterobacteria_phage	96.9	7.1e-50
SQE58337.1|2869532_2870861_+	pyrimidine transporter	NA	Q9KX94	Enterobacteria_phage	98.9	4.8e-234
SQE58338.1|2871013_2871106_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE58339.1|2871664_2872261_+	putative flavoprotein	NA	NA	NA	NA	NA
SQE58340.1|2872281_2872509_+	putative cytoplasmic protein YccJ	NA	NA	NA	NA	NA
SQE58341.1|2872546_2873788_-	glucose-1-phosphatase	NA	NA	NA	NA	NA
SQE58342.1|2874080_2875337_-	yccE	NA	NA	NA	NA	NA
SQE58343.1|2875597_2876518_+	curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	43.0	4.2e-11
SQE58344.1|2876517_2876823_+	chaperone-modulator protein	NA	NA	NA	NA	NA
SQE58345.1|2876974_2877574_-	chaperone protein TorD	NA	NA	NA	NA	NA
SQE58346.1|2877570_2880117_-	trimethylamine-N-oxide reductase precursor	NA	A0A077SK27	Escherichia_phage	30.8	3.4e-71
SQE58347.1|2880116_2881289_-	cytochrome c-type protein torC	NA	NA	NA	NA	NA
SQE58348.1|2881418_2882111_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.0	4.5e-18
SQE58349.1|2882083_2883112_-	solute-binding periplasmic protein	NA	NA	NA	NA	NA
SQE58350.1|2883239_2885939_+	hybrid sensory histidine kinase TorS	NA	A0A1V0SGX0	Hokovirus	31.9	1.0e-36
SQE58351.1|2886010_2887084_+	putative electron transport protein	NA	NA	NA	NA	NA
SQE58352.1|2887132_2887306_-	protein GnsA	NA	NA	NA	NA	NA
SQE58353.1|2888360_2888738_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE58354.1|2888782_2889058_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 10
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	3130220	3140101	4705041	transposase,tail,integrase	Enterobacteria_phage(33.33%)	13	3132136:3132150	3140175:3140189
SQE58567.1|3130220_3131510_+	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	27.5	5.3e-20
SQE58568.1|3131568_3132045_+	putative phosphatidylethanolamine-binding protein	NA	NA	NA	NA	NA
3132136:3132150	attL	TTAGTATAAAAAAGC	NA	NA	NA	NA
SQE58569.1|3132790_3133387_+	membrane protein	NA	A0A2L1IV26	Escherichia_phage	100.0	1.2e-06
SQE58570.1|3133321_3133699_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE58571.1|3133743_3134019_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE58572.1|3134149_3134899_+	membrane protein	NA	A0A127AWB9	Bacillus_phage	37.1	1.8e-20
SQE58573.1|3135556_3136774_-|tail	prophage tail fiber domain-containing protein	tail	A0A1B0VFW4	Salmonella_phage	57.2	2.6e-40
SQE58574.1|3136846_3136960_+	Xis	NA	A0A0K2FJ42	Enterobacteria_phage	97.3	1.5e-11
SQE58575.1|3137036_3137252_+	ybl17	NA	A0A1I9LJM7	Stx_converting_phage	98.6	1.4e-31
SQE58576.1|3137350_3137572_+	putative C4-type zinc finger protein	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
SQE58577.1|3137782_3137932_-	putative transmembrane protein	NA	NA	NA	NA	NA
SQE58578.1|3138627_3138795_+	Uncharacterised protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
SQE58579.1|3139030_3140101_+|integrase	putative integrase	integrase	K7P6P6	Enterobacteria_phage	99.7	5.6e-201
3140175:3140189	attR	TTAGTATAAAAAAGC	NA	NA	NA	NA
>prophage 11
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	3541245	3604382	4705041	holin,transposase	Shigella_phage(15.38%)	57	NA	NA
SQE59111.1|3541245_3541524_+|transposase	ISEhe3, transposase orfA	transposase	U5P4I9	Shigella_phage	92.5	4.5e-33
SQE59112.1|3541778_3542393_+|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	93.1	2.7e-107
SQE59114.1|3542408_3542891_-	putative flagellin structural protein	NA	NA	NA	NA	NA
SQE59115.1|3543413_3544388_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA	NA
SQE59116.1|3544494_3545346_-	alpha-ketoglutarate-dependent taurine dioxygenase	NA	NA	NA	NA	NA
SQE59117.1|3545342_3546170_-	taurine ABC transporter permease	NA	NA	NA	NA	NA
SQE59118.1|3546166_3546934_-	taurine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.3	1.1e-25
SQE59119.1|3546946_3547909_-	taurine transporter substrate binding subunit	NA	NA	NA	NA	NA
SQE59120.1|3548188_3548464_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59121.1|3548508_3548886_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59123.1|3548912_3549686_+	outer membrane protein	NA	NA	NA	NA	NA
SQE59124.1|3549873_3550149_+	regulator protein FrmR	NA	NA	NA	NA	NA
SQE59125.1|3550183_3551293_+	alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.6	1.2e-31
SQE59126.1|3551385_3552219_+	putative esterase	NA	NA	NA	NA	NA
SQE59127.1|3552344_3552884_-	nucleoprotein/polynucleotide-associated enzyme	NA	NA	NA	NA	NA
SQE59128.1|3552985_3554197_-	transport protein	NA	NA	NA	NA	NA
SQE59129.1|3554774_3555788_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.1	9.2e-44
SQE59130.1|3555784_3556735_-	acetaldehyde dehydrogenase	NA	G9E526	Ostreococcus_lucimarinus_virus	35.2	8.7e-36
SQE59132.1|3556731_3557541_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
SQE59133.1|3557550_3558417_-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	NA	NA	NA	NA	NA
SQE59134.1|3558434_3559379_-	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2- dioxygenase	NA	NA	NA	NA	NA
SQE59135.1|3559380_3561045_-	3-(3-hydroxyphenyl)propionate hydroxylase	NA	NA	NA	NA	NA
SQE59136.1|3561235_3562069_+	DNA-binding transcriptional activator MhpR	NA	NA	NA	NA	NA
SQE59137.1|3562136_3563228_+	lactose operon repressor	NA	C6ZCU4	Enterobacteria_phage	99.4	1.4e-191
SQE59138.1|3563350_3566425_+	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	99.9	0.0e+00
SQE59139.1|3566476_3567730_+	lactose permease	NA	NA	NA	NA	NA
SQE59141.1|3567801_3568407_+	galactoside O-acetyltransferase	NA	NA	NA	NA	NA
SQE59143.1|3568509_3569691_-	cyanate transporter	NA	NA	NA	NA	NA
SQE59145.1|3569696_3570167_-	cyanate hydratase	NA	NA	NA	NA	NA
SQE59146.1|3570197_3570857_-	carbonic anhydrase	NA	NA	NA	NA	NA
SQE59148.1|3570966_3571866_+	HTH-type transcriptional regulator cynR	NA	A0A2P0ZL89	Lactobacillus_phage	27.3	3.2e-16
SQE59150.1|3572402_3573686_-	cytosine deaminase	NA	NA	NA	NA	NA
SQE59151.1|3573675_3574935_-	cytosine permease	NA	NA	NA	NA	NA
SQE59152.1|3575358_3577245_-	propionate--coA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	29.4	7.0e-53
SQE59154.1|3577284_3578736_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
SQE59156.1|3578769_3579939_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
SQE59157.1|3579986_3580433_+	ribonucleoside diphosphage reductase 1 subunit beta, B2	NA	NA	NA	NA	NA
SQE59159.1|3580378_3581269_-	methylisocitrate lyase	NA	NA	NA	NA	NA
SQE59161.1|3581507_3583094_+	propionate catabolism operon regulatory protein	NA	NA	NA	NA	NA
SQE59162.1|3583191_3583467_-	protein	NA	NA	NA	NA	NA
SQE59164.1|3583652_3584285_+	LysE family translocator	NA	NA	NA	NA	NA
SQE59165.1|3584967_3585783_-	protein	NA	NA	NA	NA	NA
SQE59167.1|3586025_3587075_-	putative zinc-binding dehydrogenase	NA	A0A2K9L339	Tupanvirus	45.0	1.4e-71
SQE59168.1|3587451_3588834_-	deaminase	NA	NA	NA	NA	NA
SQE59170.1|3588843_3589794_-	carbamate kinase-like protein	NA	NA	NA	NA	NA
SQE59171.1|3589869_3590190_-	protein	NA	NA	NA	NA	NA
SQE59172.1|3590215_3591634_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE59174.1|3591633_3593181_-	YahF/FdrA-like protein	NA	NA	NA	NA	NA
SQE59176.1|3593170_3594034_-	protein	NA	NA	NA	NA	NA
SQE59177.1|3594073_3594679_-	ankyrin	NA	NA	NA	NA	NA
SQE59179.1|3594936_3595434_+	inner membrane protein	NA	NA	NA	NA	NA
SQE59181.1|3595525_3596458_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE59183.1|3596499_3597588_-	putative signal transduction protein	NA	NA	NA	NA	NA
SQE59184.1|3598462_3600496_-|holin	high-affinity choline transport protein (BCCT-family transporter)	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
SQE59186.1|3600624_3601212_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
SQE59188.1|3601225_3602698_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQE59190.1|3602711_3604382_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
>prophage 12
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	3638532	3663937	4705041	lysis,tail,integrase,transposase	Enterobacteria_phage(46.15%)	33	3631106:3631120	3663187:3663201
3631106:3631120	attL	GGCTGATTTTTATCA	NA	NA	NA	NA
SQE59240.1|3638532_3640146_-|tail	phage tail domain-containing protein	tail	X2KTY7	Enterobacteria_phage	52.5	6.4e-124
SQE59242.1|3640327_3640423_-	DLP12 prophage, DNA packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	89.3	5.4e-07
SQE59244.1|3640766_3641459_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59245.1|3641601_3641856_-	putative Rz1-like lipoprotein, Qin prophage	NA	NA	NA	NA	NA
SQE59247.1|3642054_3642588_-	membrane-associated lysozyme; Qin prophage	NA	K7PLY1	Enterobacteria_phage	93.8	6.4e-97
SQE59249.1|3642722_3642962_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59250.1|3642958_3643273_-	bacteriophage protein	NA	K7PGU6	Enterobacteria_phage	98.1	1.8e-51
SQE59252.1|3643277_3643493_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	98.6	1.2e-33
SQE59253.1|3643686_3644268_-	araC-type regulatory protein from bacteriophage origin	NA	NA	NA	NA	NA
SQE59255.1|3644354_3644732_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59257.1|3644776_3645052_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59258.1|3645085_3645190_-	araC-type regulatory protein from bacteriophage origin	NA	NA	NA	NA	NA
SQE59260.1|3645541_3646501_-	putative pathogenicity island protein	NA	NA	NA	NA	NA
SQE59261.1|3646693_3647218_+	lipoprotein	NA	A0A1W6JNX6	Morganella_phage	54.1	1.1e-48
SQE59263.1|3647373_3647751_-	putative antitermination protein Q-like protein; DLP12 prophage	NA	Q777W5	Enterobacteria_phage	84.2	7.3e-55
SQE59264.1|3647768_3648059_-	putative prophage protein	NA	Q8SBE5	Shigella_phage	100.0	2.4e-53
SQE59265.1|3648176_3648443_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59267.1|3648444_3648807_+	ferric transporter subunit	NA	NA	NA	NA	NA
SQE59268.1|3648818_3649865_+	Fe(3+) ions import ATP-binding protein fbpC	NA	G3M9Y6	Bacillus_virus	37.3	3.4e-33
SQE59270.1|3649973_3650906_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
SQE59271.1|3650892_3652320_-	amino acid permease	NA	NA	NA	NA	NA
SQE59272.1|3652372_3652462_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59274.1|3652570_3653782_-	Putative transport protein	NA	NA	NA	NA	NA
SQE59276.1|3653851_3654865_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	30.8	1.2e-43
SQE59277.1|3654861_3655812_-	acetaldehyde dehydrogenase	NA	E5EQ71	Micromonas_sp._RCC1109_virus	36.0	5.3e-33
SQE59279.1|3655808_3656618_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
SQE59281.1|3656627_3657494_-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	NA	NA	NA	NA	NA
SQE59283.1|3657522_3658485_-	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2- dioxygenase	NA	NA	NA	NA	NA
SQE59285.1|3658486_3659848_-	2-polyprenyl-6-methoxyphenol hydroxylase-like FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
SQE59286.1|3660123_3660531_+|integrase	putative integrase	integrase	Q716C2	Shigella_phage	95.8	2.5e-64
SQE59287.1|3660749_3661826_+|transposase	putative transposase	transposase	NA	NA	NA	NA
SQE59288.1|3662048_3663347_-|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	48.6	2.3e-47
3663187:3663201	attR	GGCTGATTTTTATCA	NA	NA	NA	NA
SQE59290.1|3663673_3663937_-|transposase	putative transposase	transposase	NA	NA	NA	NA
>prophage 13
LS483297	Escherichia coli strain NCTC11023 genome assembly, chromosome: 1	4705041	4046386	4104963	4705041	capsid,tRNA,integrase,transposase,portal	Enterobacteria_phage(16.67%)	59	4087056:4087070	4104042:4104056
SQE59822.1|4046386_4046665_+|transposase	ISEhe3, transposase orfA	transposase	U5P4I9	Shigella_phage	92.5	4.5e-33
SQE59824.1|4046919_4047534_+|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	93.1	2.7e-107
SQE59825.1|4047670_4047835_-	protein YjiS	NA	NA	NA	NA	NA
SQE59827.1|4048011_4049424_+	fused DNA-binding transcriptional regulator; aminotransferase	NA	NA	NA	NA	NA
SQE59829.1|4049667_4050588_-|transposase	putative transposase YhgA-like protein	transposase	Q2A0A7	Sodalis_phage	51.7	2.6e-61
SQE59831.1|4051066_4052299_+	multidrug resistance protein	NA	NA	NA	NA	NA
SQE59832.1|4052339_4053620_+	inner membrane protein	NA	NA	NA	NA	NA
SQE59834.1|4053735_4054887_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
SQE59836.1|4054896_4055664_+	ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
SQE59838.1|4055660_4055918_+	Protein of uncharacterised function (DUF3343)	NA	NA	NA	NA	NA
SQE59840.1|4055871_4056843_+	SdiA-regulated domain protein	NA	NA	NA	NA	NA
SQE59842.1|4056910_4058089_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE59843.1|4058101_4058656_-	RNA 2'-phosphotransferase-like protein	NA	A0A2R2ZGT8	Clostridioides_phage	45.6	2.7e-37
SQE59845.1|4058905_4059589_+	putative transporter	NA	NA	NA	NA	NA
SQE59847.1|4059585_4060047_+	putative transporter	NA	NA	NA	NA	NA
SQE59848.1|4060059_4061232_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
SQE59850.1|4061296_4062208_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
SQE59852.1|4062200_4062593_-	DNA replication/recombination/repair protein	NA	NA	NA	NA	NA
SQE59854.1|4063264_4064095_+	Protein of uncharacterised function (DUF2686)	NA	NA	NA	NA	NA
SQE59855.1|4064235_4065009_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
SQE59858.1|4065223_4066684_-	D-mannonate oxidoreductase, NAD-binding	NA	H8ZJP8	Ostreococcus_tauri_virus	31.9	3.6e-49
SQE59859.1|4066764_4067949_-	mannonate dehydratase	NA	NA	NA	NA	NA
SQE59861.1|4068288_4069632_+	high-affinity gluconate transporter	NA	NA	NA	NA	NA
SQE59862.1|4069805_4070708_-	FimH protein	NA	NA	NA	NA	NA
SQE59865.1|4070727_4071231_-	P pilus assembly protein, pilin FimA	NA	NA	NA	NA	NA
SQE59867.1|4071243_4071774_-	FimF protein	NA	NA	NA	NA	NA
SQE59869.1|4071783_4072470_-	outer membrane usher protein FimD, truncation	NA	NA	NA	NA	NA
SQE59871.1|4072512_4072890_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59874.1|4072934_4073210_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59877.1|4073363_4074314_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
SQE59879.1|4074683_4074998_+	protein	NA	NA	NA	NA	NA
SQE59881.1|4075026_4075302_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59884.1|4075346_4075724_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE59886.1|4075909_4076872_+|transposase	IS600 orfAB' transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-68
SQE59888.1|4077025_4079023_+	secondary glycine betaine transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	7.4e-21
SQE59890.1|4078967_4079126_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59892.1|4079085_4080363_+	Predicted membrane protein (DUF2254)	NA	NA	NA	NA	NA
SQE59895.1|4080610_4080829_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SQE59896.1|4082529_4083444_-|integrase	phage integrase	integrase	Q7M297	Enterobacteria_phage	37.2	9.8e-61
SQE59898.1|4083968_4085024_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	88.1	8.7e-170
SQE59951.1|4085027_4085390_+	Uncharacterised protein	NA	B2ZY70	Ralstonia_phage	43.0	8.7e-13
SQE59952.1|4085745_4086018_-	activator encoded in prophage CP-933I	NA	A0A2I8TV89	Erwinia_phage	44.9	6.3e-08
SQE59953.1|4086017_4086779_-|capsid	capsid morphogenesis protein from phage	capsid	NA	NA	NA	NA
4087056:4087070	attL	CGGCTGGCGTTCCAC	NA	NA	NA	NA
SQE59954.1|4087179_4089852_-	inner membrane protein from phage origin	NA	A0A1B0VP75	Pseudomonas_phage	31.7	1.1e-59
SQE59955.1|4089848_4090232_-	P4 phage protein	NA	NA	NA	NA	NA
SQE59958.1|4090228_4090513_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59959.1|4090544_4090904_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59961.1|4090896_4091214_-	Phage immunity repressor protein (fragment)	NA	Q7M2A7	Enterobacteria_phage	54.2	1.5e-05
SQE59962.1|4091260_4091446_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59963.1|4091542_4091773_-	putative phage DNA binding protein	NA	NA	NA	NA	NA
SQE59964.1|4092162_4092801_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE59965.1|4092831_4094094_-|integrase	site-specific recombinase, phage integrase family	integrase	Q7M297	Enterobacteria_phage	35.4	8.2e-66
SQE59966.1|4094538_4095558_+	oxidoreductase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	8.4e-45
SQE59967.1|4095687_4097190_+	ATPase	NA	A0A248XCZ8	Klebsiella_phage	44.3	3.0e-83
SQE59968.1|4097350_4098433_-	putative permease	NA	NA	NA	NA	NA
SQE59969.1|4098432_4099533_-	putative permease	NA	NA	NA	NA	NA
SQE59970.1|4099799_4101311_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
SQE59972.1|4101664_4102108_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
SQE59974.1|4102107_4104963_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.8e-140
4104042:4104056	attR	GTGGAACGCCAGCCG	NA	NA	NA	NA
