The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	169656	242423	4705297	transposase,tRNA,protease	Bacillus_virus(40.0%)	60	NA	NA
SQE25375.1|169656_170568_+|tRNA	glycine tRNA synthetase	tRNA	NA	NA	NA	NA
SQE25376.1|170577_172647_+|tRNA	glycine-tRNA synthetase, beta subunit	tRNA	NA	NA	NA	NA
SQE25377.1|173776_174298_-|transposase	transposase subunit	transposase	A0A2I6AZV8	Macacine_betaherpesvirus	100.0	2.7e-92
SQE25378.1|174377_174530_+	small toxic polypeptide	NA	NA	NA	NA	NA
SQE25379.1|175209_175500_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQE25380.1|175933_176644_+	putative lipoprotein	NA	NA	NA	NA	NA
SQE25381.1|176693_177668_-	2-ketoaldonate reductase/glyoxylate reductase B	NA	NA	NA	NA	NA
SQE25382.1|177771_178431_-	putative outer membrane protein	NA	NA	NA	NA	NA
SQE25383.1|178583_180917_+	biotin sulfoxide reductase	NA	A0A077SK27	Escherichia_phage	29.2	2.7e-70
SQE25384.1|180885_181326_-	putative acetyltransferase	NA	NA	NA	NA	NA
SQE25385.1|181322_181886_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
SQE25386.1|182043_182742_+	lipase	NA	NA	NA	NA	NA
SQE25387.1|182970_184179_+	transporter	NA	NA	NA	NA	NA
SQE25388.1|184502_186194_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
SQE25389.1|187104_188712_+	dipeptide ABC transporter, substrate-binding protein	NA	NA	NA	NA	NA
SQE25390.1|189019_190039_+	dipeptide transporter permease DppB	NA	NA	NA	NA	NA
SQE25391.1|190048_190951_+	dipeptide ABC transporter permease	NA	NA	NA	NA	NA
SQE25392.1|190961_191945_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	3.9e-15
SQE25393.1|191941_192946_+	dipeptide transporter ATP-binding subunit	NA	G3M9Y6	Bacillus_virus	29.9	1.1e-17
SQE25394.1|192975_194247_-	transport protein YhjV	NA	NA	NA	NA	NA
SQE25395.1|194722_194830_+	toxic polypeptide	NA	NA	NA	NA	NA
SQE25396.1|194916_196596_-	cellulose biosynthesis endoglucanase	NA	NA	NA	NA	NA
SQE25397.1|196592_196784_-	membrane protein YhjT	NA	NA	NA	NA	NA
SQE25398.1|196780_198340_-|protease	cellulose biosynthesis protease	protease	NA	NA	NA	NA
SQE25399.1|198624_198813_+	Protein of uncharacterised function (DUF2629)	NA	NA	NA	NA	NA
SQE25400.1|198824_199577_+	cell division protein	NA	NA	NA	NA	NA
SQE25401.1|199573_200470_+	cellulose synthase catalytic subunit	NA	NA	NA	NA	NA
SQE25402.1|200463_200841_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE25403.1|200885_201161_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE25404.1|201324_202968_+	cellulose synthase catalytic subunit	NA	NA	NA	NA	NA
SQE25405.1|203014_205318_+	cellulose synthase regulator protein	NA	NA	NA	NA	NA
SQE25406.1|205324_206431_+	endo-1,4-D-glucanase	NA	NA	NA	NA	NA
SQE25407.1|206412_209886_+	cellulose synthase subunit BcsC	NA	NA	NA	NA	NA
SQE25408.1|210006_211956_+	putative diguanylate cyclase	NA	NA	NA	NA	NA
SQE25409.1|212138_213425_+	C4-dicarboxylate transport protein	NA	NA	NA	NA	NA
SQE25410.1|213645_215142_+|protease	putative protease	protease	NA	NA	NA	NA
SQE25411.1|215237_216167_-	ketodeoxygluconokinase	NA	NA	NA	NA	NA
SQE25412.1|216398_217166_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
SQE25413.1|217235_219296_+	putative outer membrane assembly protein	NA	NA	NA	NA	NA
SQE25414.1|219477_220800_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE25415.1|221210_222224_-|tRNA	tRNA-processing ribonuclease	tRNA	NA	NA	NA	NA
SQE25416.1|222272_223244_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE25417.1|223691_224294_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE25418.1|224344_225994_-	cytoplasmic trehalase	NA	NA	NA	NA	NA
SQE25419.1|226397_227507_+	putative cytochrome C peroxidase	NA	NA	NA	NA	NA
SQE25420.1|227554_227794_+	putative cytochrome C peroxidase	NA	NA	NA	NA	NA
SQE25421.1|228004_229405_+	glutamate decarboxylase beta	NA	NA	NA	NA	NA
SQE25422.1|229774_230599_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQE25423.1|230966_231695_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQE25424.1|232057_235171_-	multidrug resistance protein	NA	NA	NA	NA	NA
SQE25425.1|235195_236353_-	multidrug resistance protein	NA	NA	NA	NA	NA
SQE25426.1|236412_236691_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE25427.1|236691_237219_-	DNA-binding transcriptional activator	NA	NA	NA	NA	NA
SQE25428.1|238017_238590_-	putative acid resistance protein	NA	NA	NA	NA	NA
SQE25429.1|238844_239177_+	putative periplasmic acid stress chaperone	NA	NA	NA	NA	NA
SQE25430.1|239280_239619_+	acid-resistance protein	NA	NA	NA	NA	NA
SQE25431.1|239754_240330_+	magnesium transporter ATPase	NA	G3MA03	Bacillus_virus	38.5	7.4e-14
SQE25432.1|240371_240902_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE25433.1|241057_241624_-	Slp family outer membrane lipoprotein	NA	NA	NA	NA	NA
SQE25434.1|242147_242423_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 2
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	618858	672975	4705297	integrase,tRNA,transposase,protease	Streptococcus_phage(20.0%)	53	663676:663697	674114:674135
SQE25804.1|618858_619803_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQE25805.1|620467_622603_+	polynucleotide phosphorylase	NA	NA	NA	NA	NA
SQE25806.1|622711_623596_+	lipoprotein NlpI precursor	NA	NA	NA	NA	NA
SQE25807.1|623775_625665_+	ATP-dependent RNA helicase (DEAD-box protein)	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	30.8	2.0e-52
SQE25808.1|625818_627063_+	tryptophan-specific transport protein	NA	NA	NA	NA	NA
SQE25809.1|627180_628188_-	monooxygenase	NA	NA	NA	NA	NA
SQE25810.1|628268_629147_-	putative peptidase	NA	NA	NA	NA	NA
SQE25811.1|629155_630151_-|protease	protease yhbU	protease	NA	NA	NA	NA
SQE25812.1|630359_630884_+	sterol-binding protein	NA	NA	NA	NA	NA
SQE25813.1|630877_631381_+	putative acetyltransferase	NA	NA	NA	NA	NA
SQE25814.1|631367_631670_-	GIY-YIG nuclease superfamily protein	NA	F2NZ06	Diadromus_pulchellus_ascovirus	53.8	7.8e-15
SQE25815.1|631720_632164_+	conserved protein, UPF0306 family	NA	NA	NA	NA	NA
SQE25816.1|632143_632662_-	putative general stress protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.0	4.4e-10
SQE25817.1|632789_633425_+	nucleoside-diphosphate-sugar epimerase	NA	NA	NA	NA	NA
SQE25818.1|633497_634538_+	permease	NA	NA	NA	NA	NA
SQE25819.1|634651_635227_-	putative phospholipid-binding protein	NA	NA	NA	NA	NA
SQE25820.1|635236_635827_-	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	31.1	5.4e-12
SQE25821.1|635846_636242_-	endonuclease-like protein	NA	NA	NA	NA	NA
SQE25822.1|636199_638236_-	lipoprotein	NA	NA	NA	NA	NA
SQE25823.1|638300_639161_+	putative methyltransferase	NA	M1PLC5	Streptococcus_phage	43.6	9.5e-50
SQE25824.1|639203_640295_-	fimbrial protein	NA	NA	NA	NA	NA
SQE25825.1|640305_642822_-	fimbrial usher family protein	NA	NA	NA	NA	NA
SQE25826.1|642850_643546_-	periplasmic pilin chaperone (lpfB-like)	NA	NA	NA	NA	NA
SQE25827.1|643625_644210_-	fimbrial-like adhesin protein	NA	NA	NA	NA	NA
SQE25828.1|644610_645312_-	putative galactosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
SQE25829.1|645366_646158_-	PTS system N-acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA	NA
SQE25830.1|646147_646951_-	N-acetylgalactosamine-specific PTS system EIIC component 1	NA	NA	NA	NA	NA
SQE25831.1|646989_647466_-	N-acetylgalactosamine-specific PTS system EIIB component 1	NA	NA	NA	NA	NA
SQE25832.1|647632_648493_-	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
SQE25833.1|648505_649660_-	putative tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
SQE25834.1|650010_651144_-	N-acetylglucosamine-6-phosphate deacetylase (GlcNAc 6-P deacetylase)	NA	NA	NA	NA	NA
SQE25835.1|651140_651575_-	N-acetylgalactosamine-specific PTS system EIIA component 2	NA	NA	NA	NA	NA
SQE25836.1|651592_652471_-	PTS system N-acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA	NA
SQE25837.1|652460_653240_-	N-acetylgalactosamine-specific enzyme IIC component of PTS	NA	NA	NA	NA	NA
SQE25838.1|653250_653724_-	PTS system N-acetylgalactosamine-specific transporter subunit IIB	NA	NA	NA	NA	NA
SQE25839.1|653746_655027_-	putative tagatose 6-phosphate kinase	NA	NA	NA	NA	NA
SQE25840.1|655275_656085_+	AgaR family transcriptional regulator	NA	NA	NA	NA	NA
SQE25841.1|656139_656604_-	toxin of the SohB(PrlF)-YhaV toxin-antitoxin system	NA	NA	NA	NA	NA
SQE25842.1|656603_656939_-	HtrA suppressor protein	NA	NA	NA	NA	NA
SQE25843.1|657087_658659_-	galactarate dehydratase	NA	NA	NA	NA	NA
SQE25844.1|659033_660368_+	galactarate transporter	NA	NA	NA	NA	NA
SQE25845.1|660383_661154_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
SQE25846.1|661183_662074_+	tartronate semialdehyde reductase	NA	NA	NA	NA	NA
SQE25847.1|662170_663316_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	41.3	1.7e-49
663676:663697	attL	AGATGAATGACTGTCCACGACA	NA	NA	NA	NA
SQE25848.1|663948_665409_+|integrase	phage integrase site specific recombinase	integrase	NA	NA	NA	NA
SQE25849.1|665789_666512_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA	NA
SQE25850.1|666795_667374_-	serine site-specific recombinase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	37.7	1.4e-17
SQE25851.1|667812_669321_+	Flagellin (Phase 1-C flagellin)	NA	NA	NA	NA	NA
SQE25852.1|669390_669639_+	transcriptional regulator	NA	NA	NA	NA	NA
SQE25853.1|669666_670533_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE25854.1|670529_670829_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE25855.1|671510_671867_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	93.8	2.0e-33
SQE25856.1|671823_672975_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
674114:674135	attR	AGATGAATGACTGTCCACGACA	NA	NA	NA	NA
>prophage 3
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	1026280	1079585	4705297	transposase,tRNA,protease	Escherichia_phage(41.67%)	59	NA	NA
SQE26170.1|1026280_1026658_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26171.1|1026702_1026978_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26172.1|1027006_1027288_-	putative FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
SQE26173.1|1027365_1027731_-	6-pyruvoyl tetrahydrobiopterin synthase	NA	NA	NA	NA	NA
SQE26174.1|1028046_1029846_+	sulfite reductase (NADPH) flavoprotein alpha subunit	NA	NA	NA	NA	NA
SQE26175.1|1029845_1031558_+	sulfite reductase (NADPH) hemoprotein beta subunit	NA	NA	NA	NA	NA
SQE26176.1|1031631_1032366_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA	NA
SQE26177.1|1032812_1032953_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE26178.1|1032974_1034087_-|transposase	IS186, transposase	transposase	NA	NA	NA	NA
SQE26179.1|1034325_1037025_+	CRISPR-associated helicase Cas3	NA	NA	NA	NA	NA
SQE26180.1|1037122_1038685_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26181.1|1038681_1039218_+	CRISPR-associated Cse2 family protein	NA	NA	NA	NA	NA
SQE26182.1|1039229_1039772_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26183.1|1039838_1040285_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26184.1|1040295_1041042_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26185.1|1041023_1041674_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26186.1|1041670_1042594_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26187.1|1042590_1042884_+	CRISPR-associated protein	NA	NA	NA	NA	NA
SQE26188.1|1043761_1044799_-	alkaline phosphatase isozyme conversion protein	NA	NA	NA	NA	NA
SQE26189.1|1045050_1045959_+	sulfate adenylyltransferase	NA	NA	NA	NA	NA
SQE26190.1|1045960_1047388_+	sulfate adenylyltransferase	NA	A0A1V0SGC3	Hokovirus	31.1	1.1e-29
SQE26191.1|1047387_1047993_+	adenosine 5-phosphosulfate kinase	NA	A0A2K9L4R9	Tupanvirus	38.1	4.2e-28
SQE26192.1|1048042_1048366_+	putative cytochrome oxidase subunit	NA	NA	NA	NA	NA
SQE26193.1|1048559_1048871_+	cell division protein	NA	NA	NA	NA	NA
SQE26194.1|1048889_1049600_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
SQE26195.1|1049599_1050079_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
SQE26196.1|1050075_1051125_+|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
SQE26197.1|1051105_1051867_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
SQE26198.1|1051860_1052487_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
SQE26199.1|1052626_1053766_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
SQE26200.1|1053828_1054011_+	RNA polymerase sigma factor RpoS	NA	NA	NA	NA	NA
SQE26201.1|1054061_1054337_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26202.1|1054465_1054759_+	IS1 protein InsB	NA	NA	NA	NA	NA
SQE26203.1|1054884_1055598_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	40.6	3.1e-30
SQE26204.1|1055691_1057056_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
SQE26205.1|1057144_1057921_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
SQE26206.1|1057925_1058564_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
SQE26207.1|1058560_1059823_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.0	8.3e-135
SQE26208.1|1059819_1060728_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
SQE26209.1|1060923_1061691_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
SQE26210.1|1061741_1062398_-	serine/threonine-specific protein phosphatase 2	NA	A0A077SLQ6	Escherichia_phage	47.0	6.6e-51
SQE26211.1|1062503_1065065_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
SQE26212.1|1065140_1065320_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE26213.1|1065351_1065705_+	protein	NA	NA	NA	NA	NA
SQE26214.1|1065741_1067820_-	formate hydrogenlyase transcriptional activator	NA	NA	NA	NA	NA
SQE26215.1|1067893_1068904_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA	NA
SQE26216.1|1068900_1070022_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA	NA
SQE26217.1|1070021_1070294_-	hydrogenase isoenzymes formation protein	NA	NA	NA	NA	NA
SQE26218.1|1070284_1071157_-	hydrogenase isoenzymes nickel incorporation protein	NA	NA	NA	NA	NA
SQE26219.1|1071160_1071511_-	hydrogenase nickel incorporation protein	NA	NA	NA	NA	NA
SQE26220.1|1071722_1072184_+	formate hydrogenlyase regulatory protein	NA	NA	NA	NA	NA
SQE26221.1|1072308_1072920_+	formate hydrogenlyase subunit 2	NA	NA	NA	NA	NA
SQE26222.1|1072916_1074743_+	formate hydrogenlyase subunit 3	NA	NA	NA	NA	NA
SQE26223.1|1074745_1075669_+	formate hydrogenlyase subunit 4	NA	NA	NA	NA	NA
SQE26224.1|1075686_1077396_+	formate hydrogenlyase subunit E	NA	NA	NA	NA	NA
SQE26225.1|1077405_1077948_+	formate hydrogenlyase subunit 6	NA	NA	NA	NA	NA
SQE26226.1|1077947_1078715_+	formate hydrogenlyase subunit 7	NA	NA	NA	NA	NA
SQE26227.1|1078711_1079122_+	formate hydrogenlyase maturation protein	NA	NA	NA	NA	NA
SQE26228.1|1079114_1079585_+|protease	hydrogenase 3 maturation protease	protease	NA	NA	NA	NA
>prophage 4
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	1446928	1487125	4705297	coat,integrase,terminase,holin,portal	Enterobacteria_phage(57.14%)	59	1443238:1443254	1490379:1490395
1443238:1443254	attL	GGTTGTCGATACCAATA	NA	NA	NA	NA
SQE26562.1|1446928_1447129_-	response regulator inhibitor for tor operon	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
SQE26563.1|1447187_1447355_-	Uncharacterised protein	NA	A0A0K2FJ46	Enterobacteria_phage	96.4	1.1e-26
SQE26564.1|1447465_1447960_-	phage protein	NA	V5UT79	Shigella_phage	56.0	6.1e-41
SQE26565.1|1448032_1448539_-	EA22-like protein; similarities with EA22 from lambda (modular protein involved in blocking host replication)	NA	A0A1B0VCG7	Salmonella_phage	78.3	6.0e-60
SQE26566.1|1448535_1448985_-	CPS-53 (KpLE1) prophage protein	NA	K7PMI0	Enterobacteria_phage	85.2	1.3e-63
SQE26567.1|1449488_1449971_-	prophage protein	NA	K7P6T5	Enterobacteria_phage	96.9	3.5e-78
SQE26568.1|1449954_1450866_-	Putative phage-related DNA recombination protein	NA	K7PKG9	Enterobacteria_phage	99.3	1.1e-168
SQE26569.1|1450862_1451171_-	prophage protein	NA	K7PJM4	Enterobacteria_phage	98.0	9.6e-53
SQE26570.1|1451151_1451259_-	Uncharacterised protein	NA	A0A192Y6P5	Salmonella_phage	78.1	1.5e-05
SQE26571.1|1451255_1451408_-	putative host killing protein	NA	A5VWA5	Enterobacteria_phage	100.0	4.7e-21
SQE26572.1|1451392_1451524_-	regulatory protein CIII	NA	A5VWA4	Enterobacteria_phage	97.7	5.2e-16
SQE26573.1|1451548_1452517_-	phage-like protein	NA	G5DA88	Enterobacteria_phage	100.0	7.7e-56
SQE26574.1|1452698_1453169_-	prophage protein	NA	Q9MCQ6	Enterobacteria_phage	98.7	3.1e-87
SQE26575.1|1453369_1453702_-	prophage protein	NA	Q716D8	Shigella_phage	98.2	4.2e-54
SQE26576.1|1454084_1454780_-	Repressor protein CI from phage origin	NA	A0A0N7BTS4	Escherichia_phage	96.5	1.3e-129
SQE26577.1|1454856_1455072_+	repressor protein	NA	A0A0N7C2U7	Escherichia_phage	98.6	8.2e-35
SQE26578.1|1455188_1455470_+	transcriptional activator protein	NA	K7PMG0	Enterobacteria_phage	98.9	7.4e-44
SQE26579.1|1455504_1455666_+	prophage protein	NA	Q76H53	Enterobacteria_phage	100.0	1.3e-21
SQE26580.1|1455652_1456543_+	replication protein O	NA	K7PH45	Enterobacterial_phage	99.0	9.9e-159
SQE26581.1|1456532_1457969_+	P protein; replicative DNA helicase	NA	Q8VNP7	Enterobacteria_phage	100.0	6.1e-275
SQE26582.1|1458044_1458251_+	phage protein	NA	K7P7Y0	Enterobacteria_phage	95.6	9.0e-31
SQE26583.1|1458268_1458583_+	phage protein	NA	A0A2I6PIG0	Escherichia_phage	71.4	5.9e-34
SQE26584.1|1458585_1458771_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE26585.1|1458782_1459193_+	ninB protein	NA	A0A0P0ZCW6	Stx2-converting_phage	97.8	1.1e-69
SQE26586.1|1459368_1459770_+	Uncharacterised protein	NA	K7PJK0	Enterobacteria_phage	95.5	2.1e-68
SQE26587.1|1459729_1459939_+	NinF family protein	NA	G9L691	Escherichia_phage	95.7	4.5e-30
SQE26588.1|1459931_1460201_+	Uncharacterised protein	NA	K7PHK7	Enterobacteria_phage	100.0	7.1e-44
SQE26589.1|1460200_1460491_+	82 prophage-derived uncharacterized protein ybcO	NA	A0A192Y6R9	Salmonella_phage	97.9	1.7e-51
SQE26590.1|1460487_1460850_+	prophage holliday junction resolvase	NA	A5VW85	Enterobacteria_phage	99.2	2.7e-62
SQE26591.1|1460846_1461035_+	prophage protein	NA	K7PH29	Enterobacteria_phage	100.0	1.9e-27
SQE26592.1|1461031_1461655_+	late gene regulator	NA	K7P6X1	Enterobacteria_phage	99.5	5.2e-114
SQE26593.1|1462088_1462412_+|holin	holin	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
SQE26594.1|1462395_1462872_+	phage endolysin	NA	A5VW81	Enterobacteria_phage	100.0	2.9e-88
SQE26595.1|1462868_1463336_+	Endopeptidase from phage origin (Lysis protein Rz)	NA	A0A291AWW3	Escherichia_phage	99.4	1.0e-77
SQE26596.1|1463323_1463476_+	bacteriophage protein (Gene 65)	NA	K7PKL2	Enterobacteria_phage	100.0	1.2e-21
SQE26597.1|1463680_1464166_+	T5orf172 domain	NA	C6ZR70	Salmonella_phage	100.0	8.5e-88
SQE26598.1|1464413_1464656_+	Protein of uncharacterised function (DUF2560)	NA	A0A0M4R322	Salmonella_phage	100.0	7.5e-37
SQE26599.1|1464658_1465099_+|terminase	terminase small subunit	terminase	C7U0V7	Enterobacteria_phage	100.0	5.9e-80
SQE26600.1|1465095_1466511_+|terminase	phage terminase large subunit	terminase	A5VW75	Enterobacteria_phage	99.6	5.8e-278
SQE26601.1|1466512_1468711_+|portal	phage portal protein	portal	A0A088CQ69	Enterobacteria_phage	97.1	0.0e+00
SQE26602.1|1468801_1469695_+	phage scaffold protein	NA	A0A088CPT0	Enterobacteria_phage	98.0	1.4e-128
SQE26603.1|1469713_1470967_+|coat	putative coat protein	coat	A0A088CQ56	Enterobacteria_phage	99.8	4.4e-237
SQE26604.1|1471008_1471197_+	Uncharacterised protein	NA	A0A088CPR7	Enterobacteria_phage	100.0	2.9e-28
SQE26605.1|1471177_1471639_+	DNA stabilization protein	NA	A5VW70	Enterobacteria_phage	99.3	7.8e-83
SQE26606.1|1471648_1473067_+	Packaged DNA stabilization protein from phage	NA	Q9AYZ4	Salmonella_phage	99.6	4.2e-276
SQE26607.1|1473066_1473768_+	Packaged DNA stabilization protein from phage	NA	A0A2H4FWI9	Salmonella_phage	97.9	3.6e-79
SQE26608.1|1473767_1474223_+	Head assembly protein	NA	A5VW67	Enterobacteria_phage	98.7	4.4e-86
SQE26609.1|1474225_1474918_+	DNA transfer protein	NA	A0A2H4FUQ9	Salmonella_phage	99.1	1.1e-117
SQE26610.1|1474928_1476344_+	DNA transfer protein	NA	I6RSG0	Salmonella_phage	80.7	9.8e-201
SQE26611.1|1476343_1478182_+	DNA injection protein	NA	A0A192Y934	Salmonella_phage	75.5	1.7e-250
SQE26612.1|1478201_1478531_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE26613.1|1478649_1479069_+	Uncharacterised protein	NA	B9UDL3	Salmonella_phage	97.1	2.5e-72
SQE26614.1|1479085_1479337_-	putative transcriptional repressor	NA	B9UDL4	Salmonella_phage	98.8	1.3e-39
SQE26615.1|1479427_1479589_+	putative transcriptional repressor	NA	A8CG91	Salmonella_phage	98.1	2.7e-22
SQE26616.1|1479657_1480560_+	Antirepressor protein ant	NA	Q0H8C7	Salmonella_phage	95.0	8.5e-166
SQE26617.1|1480660_1483084_+	Head binding	NA	A0A088CQ58	Enterobacteria_phage	84.9	3.6e-62
SQE26618.1|1483117_1484539_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE26619.1|1484531_1485455_-	CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase	NA	S5FKN0	Shigella_phage	91.4	7.1e-160
SQE26620.1|1485967_1487125_-|integrase	integrase	integrase	A5VW56	Enterobacteria_phage	99.2	8.2e-222
1490379:1490395	attR	GGTTGTCGATACCAATA	NA	NA	NA	NA
>prophage 5
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	1730671	1739864	4705297		Enterobacteria_phage(85.71%)	10	NA	NA
SQE26841.1|1730671_1731598_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
SQE26842.1|1731602_1732334_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE26843.1|1732314_1732422_-	putative inner membrane protein	NA	NA	NA	NA	NA
SQE26844.1|1732481_1733213_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
SQE26845.1|1733434_1735120_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
SQE26846.1|1735116_1735836_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
SQE26847.1|1735882_1736353_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
SQE26848.1|1736393_1736855_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
SQE26849.1|1736979_1738980_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
SQE26850.1|1738976_1739864_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.3	3.0e-155
>prophage 6
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	1751695	1797073	4705297	transposase,tRNA,protease	Bacillus_phage(28.57%)	44	NA	NA
SQE26858.1|1751695_1753729_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.8	1.0e-54
SQE26859.1|1753860_1754970_+	ATPase	NA	NA	NA	NA	NA
SQE26860.1|1755232_1755514_+	fimbrial-like adhesin protein	NA	NA	NA	NA	NA
SQE26861.1|1755806_1756349_+	fimbrial protein	NA	NA	NA	NA	NA
SQE26862.1|1756428_1757103_+	putative periplasmic pilin chaperone	NA	NA	NA	NA	NA
SQE26863.1|1757118_1759599_+	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
SQE26864.1|1759614_1760295_+	putative fimbrial adhesin	NA	NA	NA	NA	NA
SQE26865.1|1760345_1760621_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26866.1|1760665_1761043_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26867.1|1761135_1761426_+	fimbrial-like adhesin protein StcD	NA	NA	NA	NA	NA
SQE26868.1|1761507_1761846_-	periplasmic modulator of Ni and Co efflux	NA	NA	NA	NA	NA
SQE26869.1|1762064_1762889_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
SQE26870.1|1763009_1763282_+	transcriptional repressor RcnR	NA	NA	NA	NA	NA
SQE26871.1|1763504_1764293_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
SQE26872.1|1764289_1765090_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SQE26873.1|1765154_1765973_+	1,4-beta-N-acetylmuramidase	NA	D0R7H8	Paenibacillus_phage	38.5	2.9e-24
SQE26874.1|1766024_1766771_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE26875.1|1766744_1767710_-	putative carbohydrate/pyrimidine kinase	NA	NA	NA	NA	NA
SQE26876.1|1767706_1768711_-	putative ADP-ribosylglycohydrolase	NA	A0A1S6UB21	Serratia_phage	29.4	5.8e-14
SQE26877.1|1768707_1769985_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE26878.1|1770241_1771294_+	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
SQE26879.1|1771602_1772457_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
SQE26880.1|1772485_1773748_+	putative tagatose 6-phosphate kinase	NA	NA	NA	NA	NA
SQE26881.1|1773757_1774210_+	galactitol-specific PTS system EIIA component	NA	NA	NA	NA	NA
SQE26882.1|1774240_1774525_+	galactitol-specific PTS system EIIB component	NA	NA	NA	NA	NA
SQE26883.1|1774528_1775821_+	galactitol-specific PTS system EIIC component	NA	NA	NA	NA	NA
SQE26884.1|1775854_1776130_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26885.1|1776174_1776552_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE26886.1|1776708_1777749_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
SQE26887.1|1777848_1778628_+	galactitol utilization operon repressor	NA	NA	NA	NA	NA
SQE26888.1|1778709_1779609_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	28.6	3.7e-12
SQE26889.1|1780014_1780332_+	protein	NA	NA	NA	NA	NA
SQE26890.1|1780662_1782024_-|protease	putative protease	protease	Q6DW11	Phage_TP	99.7	1.9e-217
SQE26891.1|1782170_1782503_-	protein	NA	NA	NA	NA	NA
SQE26892.1|1782693_1783416_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	33.6	4.9e-31
SQE26893.1|1783412_1784816_-	two-component sensor kinase	NA	W8CYF6	Bacillus_phage	29.0	3.0e-32
SQE26894.1|1784812_1786228_-	putative multidrug resistance protein	NA	NA	NA	NA	NA
SQE26895.1|1786228_1789306_-	multidrug resistance protein	NA	NA	NA	NA	NA
SQE26896.1|1789306_1792429_-	multidrug resistance protein	NA	NA	NA	NA	NA
SQE26897.1|1792428_1793796_-	multidrug efflux system subunit MdtA	NA	NA	NA	NA	NA
SQE26898.1|1794562_1795222_+	von Willebrand factor type A domain-containing protein	NA	NA	NA	NA	NA
SQE26899.1|1795299_1795980_+	protein	NA	NA	NA	NA	NA
SQE26900.1|1796044_1796506_-	Uncharacterized protein conserved in bacteria (DUF2314)	NA	NA	NA	NA	NA
SQE26901.1|1796797_1797073_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 7
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	2027504	2085941	4705297	transposase,tRNA,tail,protease	Bacillus_phage(42.86%)	60	NA	NA
SQE27133.1|2027504_2029553_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.8e-86
SQE27134.1|2029744_2030626_+	M48B family peptidase	NA	NA	NA	NA	NA
SQE27135.1|2030671_2032045_-	transporter	NA	NA	NA	NA	NA
SQE27136.1|2032221_2033013_+	IclR-family transcriptional regulator	NA	NA	NA	NA	NA
SQE27137.1|2033155_2033395_-	protein	NA	NA	NA	NA	NA
SQE27138.1|2033771_2034059_+	protein	NA	NA	NA	NA	NA
SQE27139.1|2035258_2036068_+	ribosomal RNA large subunit methyltransferase A	NA	NA	NA	NA	NA
SQE27140.1|2036064_2036631_-	inner membrane protein	NA	NA	NA	NA	NA
SQE27141.1|2037059_2037518_-	inner membrane protein	NA	NA	NA	NA	NA
SQE27142.1|2037572_2038424_-	mannose-specific PTS system EIID component	NA	NA	NA	NA	NA
SQE27143.1|2038436_2039237_-	mannose-specific PTS system transporter subunit IIC	NA	NA	NA	NA	NA
SQE27144.1|2039299_2040271_-	mannose-specific PTS system EIIAB component	NA	NA	NA	NA	NA
SQE27145.1|2040536_2040746_+	cytoplasmic protein	NA	NA	NA	NA	NA
SQE27146.1|2040733_2042290_+	membrane protein	NA	A0A0R6PEZ3	Moraxella_phage	45.4	1.7e-41
SQE27147.1|2042293_2043892_-	putative signal transduction protein	NA	NA	NA	NA	NA
SQE27148.1|2044022_2045387_-	L-serine deaminase 1	NA	NA	NA	NA	NA
SQE27149.1|2045570_2046149_-	NUDIX-family hydrolase	NA	NA	NA	NA	NA
SQE27150.1|2046152_2047514_-	para-aminobenzoate synthase component I	NA	S4VT78	Pandoravirus	33.4	3.4e-41
SQE27151.1|2047587_2047767_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQE27152.1|2047886_2048186_-	protein	NA	NA	NA	NA	NA
SQE27153.1|2048607_2048955_-	putative translation initiation inhibitor	NA	NA	NA	NA	NA
SQE27154.1|2049083_2050994_+	putative ATP-binding protein	NA	A0A127AW80	Bacillus_phage	31.9	5.9e-92
SQE27155.1|2051051_2051747_+|protease	protease YeaZ	protease	NA	NA	NA	NA
SQE27156.1|2051786_2052368_+	putative lipoprotein	NA	NA	NA	NA	NA
SQE27157.1|2054339_2055455_+	ribonuclease D	NA	NA	NA	NA	NA
SQE27158.1|2055508_2056474_-	putative oxidoreductase	NA	NA	NA	NA	NA
SQE27159.1|2056529_2057654_-	putative oxidoreductase	NA	NA	NA	NA	NA
SQE27160.1|2057685_2059116_-	BCCT-family transporter	NA	NA	NA	NA	NA
SQE27161.1|2059321_2060407_-	tartrate dehydrogenase/decarboxylase (D-malate dehydrogenase [decarboxylating])	NA	NA	NA	NA	NA
SQE27162.1|2060509_2061433_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE27163.1|2061559_2062198_+	putative transport protein	NA	NA	NA	NA	NA
SQE27164.1|2062370_2062730_+	tellurite resistance protein	NA	NA	NA	NA	NA
SQE27165.1|2062733_2062916_+	protein	NA	NA	NA	NA	NA
SQE27166.1|2063063_2063312_+	putative transglycosylase associated protein	NA	NA	NA	NA	NA
SQE27167.1|2063578_2064604_-	putative signal transduction protein	NA	NA	NA	NA	NA
SQE27168.1|2064786_2065041_+	outer membrane protein	NA	NA	NA	NA	NA
SQE27169.1|2065062_2065410_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE27170.1|2065464_2066646_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE27171.1|2066745_2067564_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQE27172.1|2067520_2067967_-	inner membrane protein	NA	NA	NA	NA	NA
SQE27173.1|2068241_2068745_-|tRNA	YbaK/prolyl-tRNA synthetase-associated domain protein	tRNA	NA	NA	NA	NA
SQE27174.1|2068787_2069615_-	putative signal transduction protein	NA	A0A127AWB9	Bacillus_phage	30.6	3.5e-09
SQE27175.1|2069673_2069949_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27176.1|2069993_2070371_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27177.1|2070364_2071054_-	putative signal transduction protein	NA	NA	NA	NA	NA
SQE27178.1|2071234_2072710_-	putative signal transduction protein	NA	NA	NA	NA	NA
SQE27179.1|2072856_2074140_-	putative cytoplasmic protein	NA	A0A140HLI1	Bacillus_phage	36.3	7.6e-11
SQE27180.1|2074252_2076187_-	serine kinase family protein	NA	NA	NA	NA	NA
SQE27181.1|2076622_2077369_+	MltA-interacting protein	NA	NA	NA	NA	NA
SQE27182.1|2077458_2078313_+	putative aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	24.6	1.5e-10
SQE27183.1|2078360_2079245_-	putative aldose 1-epimerase	NA	NA	NA	NA	NA
SQE27184.1|2079328_2080324_-	glyceraldehyde 3-phosphate dehydrogenase A	NA	NA	NA	NA	NA
SQE27185.1|2080665_2081079_+	methionine sulfoxide reductase B	NA	NA	NA	NA	NA
SQE27186.1|2081120_2081393_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE27187.1|2081762_2082062_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SQE27188.1|2082182_2082839_+	putative oxidoreductase, Zn-dependent and NAD(P)-binding protein	NA	NA	NA	NA	NA
SQE27189.1|2082865_2084245_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE27190.1|2084261_2085215_+	putative zinc-binding dehydrogenase	NA	NA	NA	NA	NA
SQE27191.1|2085243_2085519_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27192.1|2085563_2085941_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 8
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	2140260	2168469	4705297	tail,transposase,tRNA,integrase,terminase,capsid	Enterobacteria_phage(68.0%)	36	2147595:2147619	2166043:2166067
SQE27247.1|2140260_2142189_+|tRNA	threonine tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.3	9.4e-130
SQE27248.1|2142300_2142735_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	6.1e-13
SQE27249.1|2142831_2143029_+	50S ribosomal subunit protein L35	NA	NA	NA	NA	NA
SQE27250.1|2143081_2143438_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
SQE27251.1|2143887_2144871_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	6.4e-34
SQE27252.1|2144885_2147273_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
SQE27253.1|2147277_2147577_+	integration host factor (IHF)	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
2147595:2147619	attL	GGCCGCTCTGCGGCCTTTTTTCTTT	NA	NA	NA	NA
SQE27254.1|2147880_2148021_-	small toxic polypeptide	NA	A0A0A7NPZ4	Enterobacteria_phage	97.8	1.5e-18
SQE27255.1|2148211_2148472_-	DNA-binding transcriptional regulator prophage remnant	NA	NA	NA	NA	NA
SQE27256.1|2148784_2149342_-	Uncharacterized conserved small protein	NA	NA	NA	NA	NA
SQE27257.1|2149344_2149932_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE27258.1|2150165_2150894_-	putative phage late gene regulator	NA	A0A0A7NQ97	Enterobacteria_phage	90.5	9.1e-118
SQE27259.1|2150997_2151270_-|tail	tail assembly protein of prophage CP-933T	tail	A0A0A7NQ97	Enterobacteria_phage	96.6	2.0e-41
SQE27260.1|2151426_2152611_+|tail	Major tail sheath protein FI	tail	A0A0A7NV69	Enterobacteria_phage	98.7	5.3e-224
SQE27261.1|2152610_2153123_+|tail	Major tail tube protein FII	tail	A0A0A7NPV8	Enterobacteria_phage	98.8	1.7e-91
SQE27262.1|2153177_2153543_+|tail	phage tail E family protein	tail	A0A0A7NPZ0	Enterobacteria_phage	98.3	1.7e-56
SQE27263.1|2153693_2156501_+|tail	tail protein (modular protein)	tail	A0A0A7NRZ9	Enterobacteria_phage	92.5	0.0e+00
SQE27264.1|2156513_2157002_+|tail	tail fiber protein	tail	A0A0A7NV65	Enterobacteria_phage	99.4	1.4e-85
SQE27265.1|2157098_2158277_-	lipopolysaccharide core biosynthesis	NA	NA	NA	NA	NA
SQE27266.1|2158421_2159126_-	IS2 element protein	NA	Q9ZXG3	Shigella_phage	99.1	7.9e-135
SQE27267.1|2159082_2159184_-	Uncharacterised protein	NA	A0A0A7NPU2	Enterobacteria_phage	100.0	9.1e-05
SQE27268.1|2159285_2160086_-|terminase	Phage terminase, endonuclease small subunit M	terminase	A0A0A7NPX9	Enterobacteria_phage	90.6	4.8e-128
SQE27269.1|2160131_2161184_-|capsid	Major capsid protein precursor (GpN)	capsid	A0A0A7NQ82	Enterobacteria_phage	96.3	9.5e-193
SQE27270.1|2161206_2161854_-	Capsid scaffolding protein O	NA	A0A0A7NRY7	Enterobacteria_phage	99.5	4.6e-113
SQE27271.1|2161846_2161996_-	Uncharacterised protein	NA	A0A0A7NV47	Enterobacteria_phage	86.4	4.2e-14
SQE27272.1|2161992_2162196_-	Uncharacterised protein	NA	A0A0A7NPS8	Enterobacteria_phage	83.6	1.9e-25
SQE27273.1|2162219_2162636_-	Prophage protein	NA	NA	NA	NA	NA
SQE27274.1|2162728_2162842_-	Uncharacterised protein	NA	A0A0A7NPW7	Enterobacteria_phage	97.3	1.6e-10
SQE27275.1|2162838_2163081_-	Uncharacterised protein	NA	A0A0A7NQ71	Enterobacteria_phage	100.0	2.3e-38
SQE27276.1|2163418_2163718_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE27277.1|2163714_2164581_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE27278.1|2164642_2164966_-	Uncharacterised protein	NA	A0A0A7NV42	Enterobacteria_phage	95.8	1.9e-35
SQE27279.1|2165015_2165531_+|integrase	phage integrase	integrase	S4TP66	Salmonella_phage	55.8	3.6e-44
SQE27280.1|2166125_2167106_+	Vitamin B12 ABC transporter, permease protein	NA	NA	NA	NA	NA
2166043:2166067	attR	GGCCGCTCTGCGGCCTTTTTTCTTT	NA	NA	NA	NA
SQE27281.1|2167168_2167720_+	vitamin B12 transport periplasmic protein (putative glutathione peroxidase)	NA	NA	NA	NA	NA
SQE27282.1|2167719_2168469_+	vitamin B12 ABC transporter, ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	9.3e-09
>prophage 9
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	2288557	2384907	4705297	transposase,integrase,terminase,protease	Escherichia_phage(25.0%)	97	2306648:2306707	2396539:2396553
SQE27396.1|2288557_2289379_-|protease	putative protease	protease	NA	NA	NA	NA
SQE27397.1|2289654_2289963_-	acid shock protein	NA	NA	NA	NA	NA
SQE27398.1|2290387_2291641_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE27399.1|2291747_2292641_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE27400.1|2292775_2293996_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
SQE27401.1|2294120_2294816_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
SQE27402.1|2294768_2296025_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
SQE27403.1|2296219_2296834_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
SQE27404.1|2296876_2297731_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
SQE27405.1|2297732_2298350_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
SQE27406.1|2298360_2300757_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	4.8e-208
SQE27407.1|2300844_2301954_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	47.1	1.1e-85
SQE27408.1|2302185_2302704_+|integrase	integrase	integrase	NA	NA	NA	NA
SQE27409.1|2304080_2304524_+	Site-specific recombinase XerD	NA	NA	NA	NA	NA
SQE27410.1|2304465_2304831_+|integrase	integrase	integrase	NA	NA	NA	NA
SQE27411.1|2306115_2306631_+	Uncharacterised protein	NA	NA	NA	NA	NA
2306648:2306707	attL	TGAACCGCCCCGGGTTTCCTGGAGAGTATTTTATCTGTGAACTCAGGCTGCCAGATCATT	NA	NA	NA	NA
SQE27412.1|2308474_2308612_+	Uncharacterised protein	NA	NA	NA	NA	NA
2306648:2306707	attL	TGAACCGCCCCGGGTTTCCTGGAGAGTATTTTATCTGTGAACTCAGGCTGCCAGATCATT	NA	NA	NA	NA
SQE27413.1|2308708_2309200_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE27414.1|2309284_2310271_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE27415.1|2310617_2310773_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE27416.1|2310965_2312444_-	dimethyl sulfoxide reductase chain YnfE	NA	A0A077SK27	Escherichia_phage	49.9	1.5e-119
SQE27417.1|2312642_2312948_-	protein	NA	NA	NA	NA	NA
SQE27418.1|2313019_2313766_+	lipoprotein	NA	NA	NA	NA	NA
SQE27419.1|2313768_2314329_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
SQE27420.1|2314363_2314705_-	protein	NA	NA	NA	NA	NA
SQE27421.1|2314839_2315166_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
SQE27422.1|2315371_2315920_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	35.9	1.7e-20
SQE27423.1|2315944_2316586_+	starvation sensing protein RspA	NA	NA	NA	NA	NA
SQE27424.1|2316597_2317617_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
SQE27425.1|2317804_2318599_-|integrase	defective integrase; Qin prophage	integrase	Q859D2	Escherichia_coli_phage	62.9	2.5e-97
SQE27426.1|2318810_2319083_-|integrase	defective integrase; Qin prophage	integrase	Q8W658	Enterobacteria_phage	68.2	2.0e-30
SQE27427.1|2319117_2319354_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
SQE27428.1|2319441_2321913_-	putative exonuclease from phage origin	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
SQE27429.1|2322006_2322198_-	putative prophage protein	NA	NA	NA	NA	NA
SQE27430.1|2322194_2322383_-	division inhibition protein	NA	NA	NA	NA	NA
SQE27431.1|2322782_2322947_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE27432.1|2322950_2323169_-	putative prophage protein	NA	NA	NA	NA	NA
SQE27433.1|2323198_2323327_-	putative prophage protein	NA	NA	NA	NA	NA
SQE27434.1|2323328_2323565_-	putative prophage protein	NA	M4QQ57	Salicola_phage	51.1	1.0e-06
SQE27435.1|2323749_2324169_-	putative phage repressor protein CI	NA	K7PK07	Enterobacteria_phage	65.1	8.8e-25
SQE27436.1|2324269_2324551_+	putative antirepressor protein Cro	NA	K7PHA1	Enterobacteria_phage	72.6	6.5e-24
SQE27437.1|2324534_2324960_+	phage regulatory protein	NA	NA	NA	NA	NA
SQE27438.1|2325031_2325955_+	replication protein	NA	A0A2H4JDG9	uncultured_Caudovirales_phage	72.4	2.9e-36
SQE27439.1|2327455_2327881_+	phage protein	NA	A0A0U2QQN3	Escherichia_phage	90.3	3.5e-61
2325916:2327226	attR	TGAACCGCCCCGGGTTTCCTGGAGAGTATTTTATCTGTGAACTCAGGCTGCCAGATCATTGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCTACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATGGACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTTCAGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCGCTGACGGATTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAT	NA	NA	NA	NA
SQE27440.1|2328108_2329134_+	Uncharacterised protein	NA	NA	NA	NA	NA
2325916:2327226	attR	TGAACCGCCCCGGGTTTCCTGGAGAGTATTTTATCTGTGAACTCAGGCTGCCAGATCATTGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCTACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATGGACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTTCAGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCGCTGACGGATTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAT	NA	NA	NA	NA
SQE27441.1|2330323_2331373_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	58.2	1.8e-114
SQE27442.1|2331390_2331768_+	putative antitermination protein Q-like protein; DLP12 prophage	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
SQE27443.1|2331923_2332448_-	lipoprotein	NA	A0A1W6JNX6	Morganella_phage	52.9	1.0e-46
SQE27444.1|2332640_2332922_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQE27445.1|2332955_2333231_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27446.1|2334591_2334765_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
SQE27447.1|2335060_2335267_+	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	79.4	7.6e-22
SQE27448.1|2335829_2336357_+|terminase	putative terminase small subunit	terminase	A5LH26	Enterobacteria_phage	100.0	2.1e-92
SQE27449.1|2336515_2337382_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE27450.1|2337378_2337678_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE27451.1|2338150_2338741_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	6.2e-24
SQE27452.1|2339057_2339291_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
SQE27453.1|2340075_2341359_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
SQE27454.1|2341447_2342908_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	4.3e-42
SQE27455.1|2342942_2343146_-	selenium carrying protein	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
SQE27456.1|2343322_2344009_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQE27457.1|2344097_2344844_-	NADP-dependent L-serine/L-allo-threonine dehydrogenase	NA	NA	NA	NA	NA
SQE27458.1|2344980_2347026_+	dipeptidyl carboxypeptidase II	NA	NA	NA	NA	NA
SQE27459.1|2347070_2347589_-	competence damage-inducible protein A	NA	NA	NA	NA	NA
SQE27460.1|2347867_2348260_+	stress response protein	NA	NA	NA	NA	NA
SQE27461.1|2348514_2349405_+	putative signal transduction protein	NA	A0A127AWB9	Bacillus_phage	37.7	6.2e-20
SQE27462.1|2349845_2351033_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE27463.1|2351227_2352127_+	amino acid metabolite efflux	NA	NA	NA	NA	NA
SQE27464.1|2352157_2352376_-	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
SQE27465.1|2352407_2352791_-	DNA-binding transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
SQE27466.1|2352810_2353245_-	multiple antibiotic resistance regulatory protein	NA	NA	NA	NA	NA
SQE27467.1|2353456_2354122_+	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
SQE27468.1|2354146_2355337_-	sugar efflux transporter	NA	NA	NA	NA	NA
SQE27469.1|2355486_2356602_-	protein	NA	NA	NA	NA	NA
SQE27470.1|2356679_2357561_-	transcriptional regulator YneJ	NA	NA	NA	NA	NA
SQE27471.1|2357661_2359050_+	succinate semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SQE27472.1|2359113_2360040_+	glutaminase 2	NA	NA	NA	NA	NA
SQE27473.1|2360039_2360399_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE27474.1|2360510_2361458_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	9.6e-19
SQE27475.1|2361684_2363136_+	altronate oxidoreductase	NA	NA	NA	NA	NA
SQE27476.1|2363342_2364257_+	inner membrane protein	NA	NA	NA	NA	NA
SQE27477.1|2364260_2365019_-	trans-aconitate methyltransferase	NA	NA	NA	NA	NA
SQE27478.1|2365075_2365366_-	autoinducer-2 (AI-2) modifying protein LsrG	NA	NA	NA	NA	NA
SQE27479.1|2365469_2366264_-	putative aldolase	NA	NA	NA	NA	NA
SQE27480.1|2366290_2367313_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE27481.1|2367324_2368317_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE27482.1|2368316_2369345_-	ABC transporter permease	NA	NA	NA	NA	NA
SQE27483.1|2369338_2370874_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	4.4e-21
SQE27484.1|2371122_2372076_+	putative sugar-binding regulatory protein	NA	NA	NA	NA	NA
SQE27485.1|2372154_2373747_+	putative carbohydrate kinase	NA	NA	NA	NA	NA
SQE27486.1|2374277_2378150_+	lipoprotein/autotransporter domain-containing protein	NA	NA	NA	NA	NA
SQE27487.1|2378151_2379702_+	lipoprotein/autotransporter domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	49.2	3.4e-106
SQE27488.1|2379924_2380191_+	DNA-binding transcriptional regulator HipB	NA	NA	NA	NA	NA
SQE27489.1|2380190_2381513_+	protein hipA	NA	NA	NA	NA	NA
SQE27490.1|2381751_2382909_+|integrase	Phage integrase	integrase	NA	NA	NA	NA
SQE27491.1|2383019_2383274_+|integrase	Phage integrase	integrase	NA	NA	NA	NA
SQE27492.1|2383236_2384907_+|integrase	Phage integrase	integrase	NA	NA	NA	NA
2396539:2396553	attR	GTGGCAGCAAAAATC	NA	NA	NA	NA
>prophage 10
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	2412768	2456096	4705297	transposase	Planktothrix_phage(25.0%)	42	NA	NA
SQE27511.1|2412768_2413146_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27512.1|2413190_2413466_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27513.1|2413619_2414570_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
SQE27514.1|2414939_2415221_+	protein	NA	NA	NA	NA	NA
SQE27515.1|2415283_2415559_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27516.1|2415603_2415981_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27517.1|2416181_2417330_+	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
SQE27518.1|2417343_2417874_+	putative fimbrial FimF precursor	NA	NA	NA	NA	NA
SQE27519.1|2417886_2418390_+	fimbrial protein	NA	NA	NA	NA	NA
SQE27520.1|2418448_2418601_+	fimbrial adhesin	NA	NA	NA	NA	NA
SQE27521.1|2418629_2418905_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27522.1|2418949_2419327_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27523.1|2419531_2420140_+	fimbrial adhesin	NA	NA	NA	NA	NA
SQE27524.1|2420473_2422753_+	putative molybdopterin-binding oxidoreductase	NA	NA	NA	NA	NA
SQE27525.1|2423271_2424033_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SQE27526.1|2424434_2426111_+	sulfatase ydeN	NA	NA	NA	NA	NA
SQE27527.1|2426121_2426499_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27528.1|2426543_2426819_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE27529.1|2426945_2428103_+	putative arylsulfatase-activating protein	NA	NA	NA	NA	NA
SQE27530.1|2428393_2430079_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	23.3	2.2e-10
SQE27531.1|2430116_2430521_+	TonB-dependent receptor	NA	NA	NA	NA	NA
SQE27532.1|2430557_2432489_+	TonB-dependent receptor	NA	NA	NA	NA	NA
SQE27533.1|2432545_2435329_+	membrane-associated peptidase	NA	A0A167R9K4	Powai_lake_megavirus	24.0	3.3e-19
SQE27534.1|2435690_2437091_+	glutamate decarboxylase beta	NA	NA	NA	NA	NA
SQE27535.1|2437246_2438782_+	glutamate/gamma-aminobutyrate antiporter (extreme acid sensitivity protein)	NA	NA	NA	NA	NA
SQE27536.1|2438912_2440232_+	putative lipoprotein	NA	NA	NA	NA	NA
SQE27537.1|2440603_2441986_+	putative signal transduction protein	NA	G3MA91	Bacillus_virus	31.5	2.0e-17
SQE27538.1|2442010_2442271_+	sensor kinase	NA	NA	NA	NA	NA
SQE27539.1|2442267_2444409_+	heme-regulated cyclic AMP phosphodiesterase (direct oxygen sensor protein)	NA	NA	NA	NA	NA
SQE27540.1|2444666_2445248_+	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
SQE27541.1|2445261_2446812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE27542.1|2446813_2447836_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE27543.1|2447832_2448729_+	ABC transporter permease	NA	NA	NA	NA	NA
SQE27544.1|2448725_2449712_+	D-ala-D-ala transporter subunit DdpD	NA	G9BWD6	Planktothrix_phage	31.2	7.2e-17
SQE27545.1|2449704_2450640_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.6	1.2e-13
SQE27546.1|2450686_2451118_-	peroxiredoxin (osmotically-inducible protein C)	NA	NA	NA	NA	NA
SQE27547.1|2451462_2451678_+	biofilm-dependent modulation protein	NA	NA	NA	NA	NA
SQE27548.1|2451779_2451917_+	30S ribosomal subunit S22	NA	NA	NA	NA	NA
SQE27549.1|2452073_2453771_+	malate dehydrogenase	NA	NA	NA	NA	NA
SQE27550.1|2453904_2454915_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	25.3	9.6e-25
SQE27551.1|2455059_2455344_+	putative plasmid maintenance protein	NA	A0A2L1IV52	Escherichia_phage	51.1	1.2e-20
SQE27552.1|2455574_2456096_+|transposase	transposase subunit	transposase	A0A2I6AZV8	Macacine_betaherpesvirus	100.0	2.7e-92
>prophage 11
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	3007253	3098478	4705297	tail,transposase,tRNA,integrase,terminase,capsid,plate,portal,protease	Salmonella_phage(53.23%)	99	3003527:3003542	3102357:3102372
3003527:3003542	attL	GTTACCGCCATCGCCA	NA	NA	NA	NA
SQE28067.1|3007253_3007871_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
SQE28068.1|3007881_3008058_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	59.6	8.5e-14
SQE28069.1|3008054_3010325_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	48.5	3.0e-191
SQE28070.1|3010563_3011856_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
SQE28071.1|3011946_3013290_-	putative ATPase	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
SQE28072.1|3013300_3013912_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
SQE28073.1|3014066_3018056_-	cell division protein FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
SQE28074.1|3018190_3018685_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA	NA
SQE28075.1|3019229_3020195_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
SQE28076.1|3020317_3022084_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	24.3	7.0e-23
SQE28077.1|3022084_3023806_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.2	9.9e-22
SQE28078.1|3023847_3024552_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
SQE28079.1|3024836_3025055_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
SQE28080.1|3025855_3028132_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.2	2.5e-166
SQE28081.1|3028162_3028483_-|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
SQE28082.1|3028805_3029030_+	stationary phase/starvation inducible regulatory protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
SQE28083.1|3029102_3031049_-	macrolide export ATP-binding/permease protein	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
SQE28084.1|3031045_3032161_-	macrolide-specific efflux protein	NA	NA	NA	NA	NA
SQE28085.1|3032275_3033268_+	virulence protein	NA	NA	NA	NA	NA
SQE28086.1|3033264_3034923_-	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA	NA
SQE28087.1|3035347_3036043_+	aquaporin Z	NA	NA	NA	NA	NA
SQE28088.1|3036537_3037437_+	transporter	NA	NA	NA	NA	NA
SQE28089.1|3037580_3039233_+	hydroxylamine reductase	NA	NA	NA	NA	NA
SQE28090.1|3039244_3040213_+	HCP oxidoreductase, NADH-dependent	NA	NA	NA	NA	NA
SQE28091.1|3040345_3042064_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.0	5.2e-31
SQE28092.1|3042100_3043102_+	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
SQE28093.1|3043112_3044543_+	NAD(P)-binding Rossmann-fold domain	NA	NA	NA	NA	NA
SQE28094.1|3044641_3045655_+	nucleotide di-P-sugar epimerase or dehydratase	NA	NA	NA	NA	NA
SQE28095.1|3045651_3046482_-	putative N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.0	5.7e-07
SQE28096.1|3046478_3046802_-	conserved protein, UPF0145 family	NA	NA	NA	NA	NA
SQE28097.1|3046927_3047443_+	lipoprotein	NA	NA	NA	NA	NA
SQE28098.1|3047660_3048389_+	arginine transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	4.6e-29
SQE28099.1|3048406_3049138_+	arginine ABC transporter, substrate-binding protein	NA	NA	NA	NA	NA
SQE28100.1|3049144_3049861_+	arginine transport system permease	NA	NA	NA	NA	NA
SQE28101.1|3049860_3050529_+	arginine ABC transporter permease	NA	NA	NA	NA	NA
SQE28102.1|3050819_3051551_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE28103.1|3051749_3052877_-	23S rRNA (uracil-5-)-methyltransferase	NA	A0A1X9I6F4	Streptococcus_phage	27.9	1.2e-28
SQE28104.1|3052917_3053406_-	inner membrane protein	NA	NA	NA	NA	NA
SQE28105.1|3053465_3054311_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA	NA
SQE28106.1|3054307_3055261_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA	NA
SQE28107.1|3055270_3056404_-	putrescine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	1.4e-29
SQE28108.1|3056722_3057559_-	putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQE28109.1|3057959_3058436_-	TPR repeat-containing protein	NA	NA	NA	NA	NA
SQE28110.1|3058523_3059426_-	ribosomal protein S6 modification protein	NA	I3ULC9	Synechococcus_phage	34.4	2.6e-37
SQE28111.1|3059486_3060209_-	nitroreductase NfsA	NA	NA	NA	NA	NA
SQE28112.1|3060192_3060480_-	inner membrane protein	NA	NA	NA	NA	NA
SQE28113.1|3060639_3060897_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
SQE28114.1|3060926_3061304_-	inner membrane protein YbjM	NA	NA	NA	NA	NA
SQE28115.1|3061574_3063260_+	putative transport protein with two RCK domains	NA	NA	NA	NA	NA
SQE28116.1|3063495_3063714_-	prophage P2 OGR-like protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
SQE28117.1|3063804_3064905_-	Late control protein D protein	NA	E5G6Q3	Salmonella_phage	86.3	1.2e-177
SQE28118.1|3064901_3065387_-|tail	bacteriophage tail protein GpU	tail	E5G6Q2	Salmonella_phage	80.6	3.7e-67
SQE28119.1|3065383_3068461_-|tail	TP901 family phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	62.7	0.0e+00
SQE28120.1|3068587_3068890_-|tail	tail E family protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	5.3e-40
SQE28121.1|3068944_3069460_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	94.7	4.8e-89
SQE28122.1|3069469_3070642_-|tail	tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	89.7	1.7e-203
SQE28123.1|3070784_3071012_-	site-specific DNA recombinase; e14 prophage	NA	A0A0F7LA37	Escherichia_phage	76.8	4.0e-24
SQE28124.1|3070996_3071350_-	site-specific DNA recombinase; e14 prophage	NA	M1T2R9	Escherichia_phage	92.7	1.1e-52
SQE28125.1|3071380_3071872_+|tail	tail fiber protein	tail	F1BUP1	Erwinia_phage	35.3	4.8e-06
SQE28126.1|3071874_3072318_+|tail	Caudovirales tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	49.7	3.6e-37
SQE28127.1|3072289_3072892_-|tail	tail fiber assembly	tail	M1SV83	Escherichia_phage	88.0	5.6e-97
SQE28128.1|3072891_3074436_-|tail	putative variable tail fiber protein	tail	M1TAS6	Escherichia_phage	71.6	4.5e-199
SQE28129.1|3074432_3075038_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	3.4e-110
SQE28130.1|3075030_3075939_-|plate	Baseplate assembly protein GpJ	plate	A0A1S6KZY6	Salmonella_phage	90.7	2.0e-143
SQE28131.1|3075925_3076285_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	87.4	3.2e-52
SQE28132.1|3076281_3076860_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	87.0	4.2e-94
SQE28133.1|3076950_3078096_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28134.1|3078073_3078520_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	81.8	5.3e-60
SQE28135.1|3078512_3078944_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.0	1.3e-71
SQE28136.1|3079039_3079468_-	regulatory protein	NA	E5G6N2	Salmonella_phage	76.6	3.8e-47
SQE28137.1|3079464_3079842_-	membrane protein	NA	A0A1S6KZZ2	Salmonella_phage	40.8	1.4e-16
SQE28138.1|3079843_3080356_-	glycoside hydrolase family protein	NA	A0A1S6KZY9	Salmonella_phage	90.5	7.6e-87
SQE28139.1|3080336_3080552_-	putative secretory protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
SQE28140.1|3080555_3080759_-|tail	tail X family protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
SQE28141.1|3080758_3081223_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	4.2e-76
SQE28142.1|3081318_3081969_-|terminase	small terminase subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
SQE28143.1|3081972_3083031_-|capsid	P2 family phage major capsid protein	capsid	E5G6M6	Salmonella_phage	93.4	2.2e-181
SQE28144.1|3083047_3083881_-|capsid	capsid scaffolding	capsid	A0A1S6KZW9	Salmonella_phage	89.5	1.2e-121
SQE28145.1|3084023_3085790_+	Terminase, ATPase subunit	NA	A0A1S6KZW3	Salmonella_phage	99.3	0.0e+00
SQE28146.1|3085789_3086815_+|capsid,portal	capsid portal protein	capsid,portal	E5G6M3	Salmonella_phage	88.9	4.0e-172
SQE28147.1|3086897_3087173_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28148.1|3087217_3087595_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28149.1|3087677_3088166_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28150.1|3088171_3088492_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28151.1|3088488_3089556_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28152.1|3089895_3090573_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28153.1|3090686_3090920_-	Prophage protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
SQE28154.1|3090930_3091119_-	Uncharacterised protein	NA	E5G6M0	Salmonella_phage	96.8	1.6e-26
SQE28155.1|3091271_3093686_-	putative replication protein for prophage	NA	E5G6L9	Salmonella_phage	95.4	0.0e+00
SQE28156.1|3093682_3094540_-	site-specific DNA-methyltransferase	NA	E5G6L8	Salmonella_phage	92.6	4.1e-154
SQE28157.1|3094536_3094764_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	7.8e-36
SQE28158.1|3094763_3094997_-	Protein of uncharacterised function (DUF2732)	NA	E5G6L6	Salmonella_phage	97.4	2.4e-32
SQE28159.1|3095064_3095406_-	Uncharacterised protein	NA	E5G6L5	Salmonella_phage	97.3	5.1e-55
SQE28160.1|3095369_3095570_-	Protein of uncharacterised function (DUF2724)	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
SQE28161.1|3095577_3096087_-	phage regulatory protein CII	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
SQE28162.1|3096119_3096341_-	ybl30	NA	NA	NA	NA	NA
SQE28163.1|3096466_3097036_+	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
SQE28164.1|3097051_3097267_+	Uncharacterised protein	NA	A0A0R6PIH8	Moraxella_phage	71.4	2.9e-08
SQE28165.1|3097428_3098478_+|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	56.1	5.3e-103
3102357:3102372	attR	TGGCGATGGCGGTAAC	NA	NA	NA	NA
>prophage 12
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	3183922	3222386	4705297	coat,lysis,tail,transposase,integrase,terminase,capsid,head,portal	Enterobacteria_phage(57.14%)	49	3204461:3204476	3224094:3224109
SQE28250.1|3183922_3187150_-|tail	tail fiber protein	tail	X2KTY7	Enterobacteria_phage	58.8	6.4e-06
SQE28251.1|3187214_3187814_-	membrane protein, Lom/All family	NA	H6WZM8	Escherichia_phage	94.0	7.2e-105
SQE28252.1|3187881_3191361_-	Host specificity protein J of prophage	NA	A0A291AWT4	Escherichia_phage	90.8	0.0e+00
SQE28253.1|3191421_3191994_-|tail	phage tail assembly protein	tail	A0A0K2FJB0	Escherichia_phage	99.5	6.7e-84
SQE28254.1|3191990_3192734_-|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
SQE28255.1|3192739_3193438_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	99.6	8.6e-134
SQE28256.1|3193437_3193767_-|tail	Minor tail protein M	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
SQE28257.1|3193763_3196325_-|tail	tail component of prophage	tail	A0A0K2FI43	Enterobacteria_phage	96.7	0.0e+00
SQE28258.1|3196317_3196752_-|tail	minor tail protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
SQE28259.1|3196733_3197156_-|tail	Minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	85.7	2.2e-60
SQE28260.1|3197171_3197912_-|tail	Major tail protein V	tail	A0A0K2FJ05	Enterobacteria_phage	97.6	1.8e-129
SQE28261.1|3197919_3198315_-|tail	phage minor tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
SQE28262.1|3198311_3198890_-|tail	minor tail protein	tail	A0A2R9YJK4	Escherichia_phage	97.9	3.5e-80
SQE28263.1|3198901_3199255_-|capsid	minor capsid protein	capsid	A0A2R9YJJ5	Escherichia_phage	98.3	2.6e-62
SQE28264.1|3199266_3199662_-	DNA packaging protein from bacteriophage origin	NA	A0A2R9YJP4	Escherichia_phage	95.5	5.7e-58
SQE28265.1|3199703_3200729_-|head,coat	phage major head protein (major coat protein)	head,coat	C6ZCY2	Enterobacteria_phage	97.7	1.4e-188
SQE28266.1|3200784_3201117_-	Head decoration protein from bacteriophage origin	NA	A0A2R9YJN3	Escherichia_phage	98.2	1.1e-54
SQE28267.1|3201126_3202446_-|capsid	minor capsid protein C from bacteriophage origin	capsid	A0A2I6TC87	Escherichia_phage	98.4	1.5e-232
SQE28268.1|3202426_3204028_-|capsid,portal	phage portal protein (minor capsid protein)	capsid,portal	A0A0K2FJC0	Enterobacteria_phage	98.7	4.2e-309
SQE28269.1|3204024_3204231_-|head,tail	head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
SQE28270.1|3204227_3206153_-|terminase	phage terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	99.5	0.0e+00
3204461:3204476	attL	GCTCTTCAGCAGTCAG	NA	NA	NA	NA
SQE28271.1|3206127_3206673_-	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
SQE28272.1|3207061_3207301_+	Qin prophage	NA	A0A0K2FIR8	Escherichia_phage	96.3	2.6e-21
SQE28273.1|3207347_3207647_+|transposase	transposase	transposase	NA	NA	NA	NA
SQE28274.1|3207643_3208510_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE28275.1|3208614_3209025_+	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	77.8	2.7e-55
SQE28276.1|3209327_3209852_-	Rha protein	NA	G8C7W4	Escherichia_phage	94.2	4.5e-87
SQE28277.1|3210054_3210207_-	bacteriophage protein (Gene 65)	NA	Q716B2	Shigella_phage	100.0	2.1e-21
SQE28278.1|3210194_3210662_-	Rz endopeptidase from lambdoid prophage DLP12	NA	Q9AZ06	Salmonella_phage	91.0	3.4e-70
SQE28279.1|3210658_3211156_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	96.4	1.3e-88
SQE28280.1|3211155_3211371_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
SQE28281.1|3211944_3213027_+	outer membrane porin protein NmpC	NA	Q1MVN1	Enterobacteria_phage	78.7	4.4e-161
SQE28282.1|3213215_3213599_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
SQE28283.1|3213684_3213822_-	DLP12 prophage; small protein	NA	K7PHH3	Enterobacteria_phage	70.7	1.1e-08
SQE28284.1|3213821_3214184_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	4.3e-60
SQE28285.1|3214180_3214471_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	91.7	6.3e-46
SQE28286.1|3214463_3214634_-	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	69.8	1.4e-13
SQE28287.1|3214633_3215089_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	67.5	2.8e-61
SQE28288.1|3215276_3215633_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28289.1|3216094_3216313_-	antirepressor protein	NA	NA	NA	NA	NA
SQE28290.1|3216529_3217165_-	phage recombinase	NA	NA	NA	NA	NA
SQE28291.1|3217115_3218054_-	site-specific invertase; DLP12 prophage	NA	Q3HQV4	Burkholderia_phage	34.9	1.0e-28
SQE28292.1|3218310_3218643_-	Multidrug transporter emrE	NA	NA	NA	NA	NA
SQE28293.1|3218710_3219013_-	Ren protein from phage origin	NA	A0A0N6WES4	Escherichia_phage	93.5	1.7e-41
SQE28294.1|3219009_3219711_-	replication protein P of bacteriophage	NA	M1FJ72	Enterobacteria_phage	97.4	7.9e-127
SQE28295.1|3219707_3220082_-	replication protein from bacteriophage origin	NA	C1JJ53	Enterobacteria_phage	97.6	6.8e-69
SQE28296.1|3220230_3220506_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28297.1|3220550_3220928_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28298.1|3221315_3222386_+|integrase	putative integrase	integrase	Q9MCR4	Enterobacteria_phage	100.0	5.1e-202
3224094:3224109	attR	GCTCTTCAGCAGTCAG	NA	NA	NA	NA
>prophage 13
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	3414962	3476610	4705297	transposase,tRNA	Leptospira_phage(12.5%)	56	NA	NA
SQE28470.1|3414962_3416075_-|transposase	IS186, transposase	transposase	NA	NA	NA	NA
SQE28471.1|3416755_3417874_+	carboxylate-amine ligase	NA	NA	NA	NA	NA
SQE28472.1|3417939_3418188_+	membrane protein YbdJ	NA	NA	NA	NA	NA
SQE28473.1|3418252_3418621_+	putative cytoplasmic protein YjbR	NA	NA	NA	NA	NA
SQE28474.1|3418714_3419368_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
SQE28475.1|3419475_3420723_+	putative mechanosensitive ion channel protein	NA	NA	NA	NA	NA
SQE28476.1|3420790_3422167_-	phenylalanine transporter	NA	NA	NA	NA	NA
SQE28477.1|3422268_3425412_-	cation efflux system protein	NA	S5VTK5	Leptospira_phage	22.1	2.2e-59
SQE28478.1|3425423_3426647_-	cation efflux system protein	NA	NA	NA	NA	NA
SQE28479.1|3426662_3426995_-	cation efflux system protein	NA	NA	NA	NA	NA
SQE28480.1|3427152_3428526_-	copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA	NA
SQE28481.1|3428682_3429366_+	two-component system response regulator	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
SQE28482.1|3429355_3430804_+	sensor kinase CusS	NA	NA	NA	NA	NA
SQE28483.1|3431540_3433442_+	Rhs element Vgr protein	NA	A0A077K8Q4	Ralstonia_phage	25.9	6.0e-28
SQE28484.1|3433469_3433931_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQE28485.1|3433950_3436605_+	Rhs core protein with extension	NA	NA	NA	NA	NA
SQE28486.1|3436601_3438542_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA	NA
SQE28487.1|3438654_3441627_+	bacteriophage N4 receptor, outer membrane subunit	NA	NA	NA	NA	NA
SQE28488.1|3441627_3442518_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28489.1|3442706_3443462_+	porin thermoregulatory protein	NA	NA	NA	NA	NA
SQE28490.1|3443826_3444459_+	two component transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
SQE28491.1|3444461_3444977_-	fimbrial protein	NA	NA	NA	NA	NA
SQE28492.1|3444987_3445965_-	fimbrial protein	NA	NA	NA	NA	NA
SQE28493.1|3446006_3448616_-	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
SQE28494.1|3448646_3449339_-	fimbrial chaperone	NA	NA	NA	NA	NA
SQE28495.1|3449558_3450101_-	fimbrial-like protein	NA	NA	NA	NA	NA
SQE28496.1|3450571_3451438_+	5,10-methylene-tetrahydrofolate dehydrogenase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
SQE28497.1|3451439_3451652_+	putative RNA-binding protein	NA	NA	NA	NA	NA
SQE28498.1|3451759_3452281_+	putative membrane-bound metal-dependent hydrolase	NA	NA	NA	NA	NA
SQE28499.1|3452316_3453702_-|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
SQE28500.1|3453875_3454370_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA	NA
SQE28501.1|3454372_3455095_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
SQE28502.1|3455212_3455722_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	NA	NA	NA	NA
SQE28503.1|3455718_3456786_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQE28504.1|3456980_3457874_-	carbamate kinase	NA	NA	NA	NA	NA
SQE28505.1|3457870_3458686_-	putative carboxylase	NA	NA	NA	NA	NA
SQE28506.1|3458696_3459956_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQE28507.1|3460020_3460320_+	IS1 orfA	NA	NA	NA	NA	NA
SQE28508.1|3460339_3460717_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28509.1|3460793_3460952_+	glyoxylate carboligase (tartronate-semialdehyde synthase)	NA	NA	NA	NA	NA
SQE28510.1|3460964_3461741_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
SQE28511.1|3461840_3462719_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
SQE28512.1|3462887_3464342_+	putative allantoin permease	NA	NA	NA	NA	NA
SQE28513.1|3464401_3465763_+	allantoinase	NA	NA	NA	NA	NA
SQE28514.1|3465819_3467121_+	putative permease	NA	NA	NA	NA	NA
SQE28515.1|3467142_3468288_+	glycerate kinase II	NA	W6LM47	Streptococcus_phage	41.9	1.8e-48
SQE28516.1|3468457_3468835_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28517.1|3468879_3469155_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28518.1|3469188_3470781_-	glyoxylate carboligase (tartronate-semialdehyde synthase)	NA	E4WLQ6	Ostreococcus_tauri_virus	27.2	2.4e-38
SQE28519.1|3470870_3471686_-	negative regulator of allantoin and glyoxylate utilization operons	NA	NA	NA	NA	NA
SQE28520.1|3471763_3472246_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
SQE28521.1|3472475_3473402_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQE28522.1|3473470_3474565_+|tRNA	tRNA 2-selenouridine synthase	tRNA	NA	NA	NA	NA
SQE28523.1|3474680_3475052_+	DNA-binding transcriptional regulator	NA	A0A077SLK2	Escherichia_phage	75.4	3.1e-50
SQE28524.1|3475912_3476290_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28525.1|3476334_3476610_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 14
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	3652177	3674211	4705297	transposase,integrase,protease	Micromonas_sp._RCC1109_virus(22.22%)	23	3649233:3649248	3673581:3673596
3649233:3649248	attL	GCCCGCCACGATGCGC	NA	NA	NA	NA
SQE28687.1|3652177_3652555_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28688.1|3652556_3652919_+	ferric transporter subunit	NA	NA	NA	NA	NA
SQE28689.1|3652930_3653977_+	Fe(3+) ions import ATP-binding protein fbpC	NA	G3M9Y6	Bacillus_virus	37.7	1.5e-33
SQE28690.1|3654085_3655018_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
SQE28691.1|3655004_3656432_-	amino acid permease	NA	NA	NA	NA	NA
SQE28692.1|3656484_3656574_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28693.1|3656682_3657894_-	Putative transport protein	NA	NA	NA	NA	NA
SQE28694.1|3657963_3658977_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	30.8	1.2e-43
SQE28695.1|3658973_3659924_-	acetaldehyde dehydrogenase	NA	E5EQ71	Micromonas_sp._RCC1109_virus	36.0	5.3e-33
SQE28696.1|3659920_3660730_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
SQE28697.1|3660739_3661606_-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	NA	NA	NA	NA	NA
SQE28698.1|3661634_3662588_-	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2- dioxygenase	NA	NA	NA	NA	NA
SQE28699.1|3662589_3663951_-	2-polyprenyl-6-methoxyphenol hydroxylase-like FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
SQE28700.1|3664036_3665188_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
SQE28701.1|3665445_3666099_+|integrase	putative integrase	integrase	Q716C2	Shigella_phage	95.8	6.9e-125
SQE28702.1|3665996_3666989_-|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	48.6	1.8e-47
SQE28703.1|3666949_3667294_-|transposase	transposase	transposase	F6MIM4	Haemophilus_phage	69.8	2.0e-11
SQE28704.1|3667706_3668291_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28705.1|3668391_3668673_+	Putative excisionase	NA	NA	NA	NA	NA
SQE28706.1|3668707_3669277_+	molecular chaperone	NA	NA	NA	NA	NA
SQE28707.1|3669382_3672232_+	chaperone ATPase	NA	K4FB40	Cronobacter_phage	41.2	1.2e-128
SQE28708.1|3672231_3672423_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28709.1|3672483_3674211_+|protease	ATP-dependent metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	37.7	9.7e-86
3673581:3673596	attR	GCGCATCGTGGCGGGC	NA	NA	NA	NA
>prophage 15
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	3683596	3719984	4705297	transposase,integrase,capsid	Enterobacteria_phage(27.27%)	48	3698395:3698411	3727191:3727207
SQE28720.1|3683596_3684856_-|transposase	transposase	transposase	A0A077K814	Ralstonia_phage	45.2	4.2e-54
SQE28721.1|3685287_3686151_+	CP4-6 prophage; putative GTP-binding protein	NA	NA	NA	NA	NA
SQE28722.1|3686242_3687064_+	CP4-6 prophage protein	NA	A0A2C9CX26	Yersinia_phage	39.1	2.1e-46
SQE28723.1|3687280_3687982_+	CP4-57 prophage; putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
SQE28724.1|3688022_3688259_+	CP4-57 prophage; putative inner membrane protein	NA	NA	NA	NA	NA
SQE28725.1|3688258_3688702_+	CP4-6 prophage; putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
SQE28726.1|3688724_3689192_+	CP4-6 prophage protein	NA	NA	NA	NA	NA
SQE28727.1|3689268_3689508_+	CP4-6 prophage protein	NA	NA	NA	NA	NA
SQE28728.1|3689605_3690064_+	CP4-6 prophage protein	NA	A9J566	Pseudomonas_phage	32.8	2.0e-14
SQE28729.1|3690079_3690556_+	CP4-6 prophage; putative DNA repair protein	NA	NA	NA	NA	NA
SQE28730.1|3690564_3690786_+	CP4-44 prophage	NA	NA	NA	NA	NA
SQE28731.1|3690804_3691122_+	CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system	NA	NA	NA	NA	NA
SQE28732.1|3691142_3691484_+	CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system	NA	NA	NA	NA	NA
SQE28733.1|3691599_3691704_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28734.1|3692061_3693000_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28735.1|3693154_3694021_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
SQE28736.1|3694017_3694317_-|transposase	transposase	transposase	NA	NA	NA	NA
SQE28737.1|3694363_3694552_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28738.1|3694562_3695543_-	DNA protecting protein DprA	NA	NA	NA	NA	NA
SQE28739.1|3695958_3696231_-	Ogr family transcription activator	NA	A0A2I8TV89	Erwinia_phage	41.1	8.3e-08
SQE28740.1|3696236_3696788_-	polarity suppression protein from phage origin	NA	NA	NA	NA	NA
SQE28741.1|3696784_3697528_-|capsid	capsid morphogenesis protein from phage	capsid	NA	NA	NA	NA
SQE28742.1|3697929_3700602_-	inner membrane protein from phage origin	NA	A0A1B0VP75	Pseudomonas_phage	34.6	9.2e-59
3698395:3698411	attL	CATCGCCACCAGTGCAA	NA	NA	NA	NA
SQE28743.1|3700598_3700982_-	P4 phage protein	NA	NA	NA	NA	NA
SQE28744.1|3700978_3701263_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28745.1|3701647_3701824_-	Phage immunity repressor protein (fragment)	NA	Q7M2A7	Enterobacteria_phage	55.6	4.2e-05
SQE28746.1|3701955_3702129_+	phage protein	NA	NA	NA	NA	NA
SQE28747.1|3702161_3702452_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE28748.1|3702862_3703240_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28749.1|3703284_3703560_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE28750.1|3703593_3704178_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQE28751.1|3704174_3705365_-|integrase	prophage CPS-53 integrase	integrase	Q7M297	Enterobacteria_phage	55.7	5.8e-122
SQE28752.1|3705719_3706973_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
SQE28753.1|3706984_3708088_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
SQE28754.1|3708375_3709431_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
SQE28755.1|3709469_3709871_-	sigma factor-binding protein crl (curlin genes transcriptional activator)	NA	NA	NA	NA	NA
SQE28756.1|3709928_3711173_-	esterase	NA	NA	NA	NA	NA
SQE28757.1|3711264_3711723_-	xanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA	NA
SQE28758.1|3711983_3713441_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
SQE28759.1|3713497_3713998_-	peptide chain release factor H	NA	NA	NA	NA	NA
SQE28760.1|3713966_3714233_-	ykfJ	NA	NA	NA	NA	NA
SQE28761.1|3714467_3714842_-	putative acetyltransferase	NA	NA	NA	NA	NA
SQE28762.1|3714929_3715328_-	toxin YafO	NA	NA	NA	NA	NA
SQE28763.1|3715330_3715624_-	antitoxin of the YafO-YafN toxin-antitoxin system	NA	NA	NA	NA	NA
SQE28764.1|3715675_3716731_-	DNA polymerase IV	NA	NA	NA	NA	NA
SQE28765.1|3716801_3717488_-	lateral flagellar motor protein B (MotB-like)	NA	NA	NA	NA	NA
SQE28766.1|3717531_3719271_+	flagellar system protein	NA	NA	NA	NA	NA
SQE28767.1|3719486_3719984_-|transposase	RAYT REP element-mobilizing transposase; TnpA(REP)	transposase	NA	NA	NA	NA
3727191:3727207	attR	TTGCACTGGTGGCGATG	NA	NA	NA	NA
>prophage 16
LS483296	Escherichia coli strain NCTC9966 genome assembly, chromosome: 1	4705297	4057062	4107874	4705297	transposase	Stx2-converting_phage(25.0%)	54	NA	NA
SQE29081.1|4057062_4057272_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
SQE29082.1|4057459_4057759_-	IS1 orfA	NA	NA	NA	NA	NA
SQE29083.1|4058029_4059289_+	multidrug resistance protein	NA	NA	NA	NA	NA
SQE29084.1|4059329_4060610_+	inner membrane protein	NA	NA	NA	NA	NA
SQE29085.1|4060725_4061877_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
SQE29086.1|4061886_4062654_+	ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
SQE29087.1|4062650_4062908_+	Protein of uncharacterised function (DUF3343)	NA	NA	NA	NA	NA
SQE29088.1|4062861_4063833_+	SdiA-regulated domain protein	NA	NA	NA	NA	NA
SQE29089.1|4063900_4065079_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE29090.1|4065091_4065646_-	RNA 2'-phosphotransferase-like protein	NA	A0A2R2ZGT8	Clostridioides_phage	45.6	2.7e-37
SQE29091.1|4065894_4066578_+	putative transporter	NA	NA	NA	NA	NA
SQE29092.1|4066574_4067036_+	putative transporter	NA	NA	NA	NA	NA
SQE29093.1|4067048_4068221_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
SQE29094.1|4068285_4069197_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
SQE29095.1|4069189_4069582_-	DNA replication/recombination/repair protein	NA	NA	NA	NA	NA
SQE29096.1|4070254_4071085_+	Protein of uncharacterised function (DUF2686)	NA	NA	NA	NA	NA
SQE29097.1|4071225_4071951_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
SQE29098.1|4071997_4072192_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29099.1|4072213_4073674_-	D-mannonate oxidoreductase, NAD-binding	NA	H8ZJP8	Ostreococcus_tauri_virus	32.2	9.5e-50
SQE29100.1|4073754_4074939_-	mannonate dehydratase	NA	NA	NA	NA	NA
SQE29101.1|4075278_4076622_+	high-affinity gluconate transporter	NA	NA	NA	NA	NA
SQE29102.1|4076794_4077697_-	FimH protein	NA	NA	NA	NA	NA
SQE29103.1|4077716_4078220_-	P pilus assembly protein, pilin FimA	NA	NA	NA	NA	NA
SQE29104.1|4078232_4078763_-	FimF protein	NA	NA	NA	NA	NA
SQE29105.1|4078772_4081409_-	outer membrane usher protein FimD	NA	NA	NA	NA	NA
SQE29106.1|4081475_4082201_-	type I fimbrial chaperone	NA	NA	NA	NA	NA
SQE29107.1|4082237_4082735_-	type-1 fimbrial protein FimI	NA	NA	NA	NA	NA
SQE29108.1|4082841_4083396_-	type 1 fimbriae major subunit FimA	NA	NA	NA	NA	NA
SQE29109.1|4083877_4084474_-	tyrosine recombinase	NA	A0A2L1IV36	Escherichia_phage	53.4	3.9e-50
SQE29110.1|4084950_4085553_-	tyrosine recombinase	NA	A0A2L1IV36	Escherichia_phage	52.3	3.1e-55
SQE29111.1|4085812_4086208_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29112.1|4087006_4087723_+	N-acetylneuraminic acid outer membrane porin	NA	NA	NA	NA	NA
SQE29113.1|4087742_4088849_+	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA	NA
SQE29114.1|4088913_4089894_+	YjhS protein	NA	Q08JA2	Stx2-converting_phage	55.9	1.2e-101
SQE29115.1|4089901_4090552_-	endonuclease	NA	NA	NA	NA	NA
SQE29116.1|4090930_4091116_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQE29117.1|4091596_4091749_-	putative restriction methylase	NA	NA	NA	NA	NA
SQE29118.1|4091845_4092043_-	Aec78	NA	NA	NA	NA	NA
SQE29119.1|4092279_4092792_+|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	64.9	2.4e-48
SQE29120.1|4092849_4093722_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	62.0	4.3e-106
SQE29121.1|4094027_4094204_+	Insertion element IS2A protein	NA	Q76S41	Shigella_phage	98.2	4.1e-24
SQE29122.1|4094905_4095688_-	transcriptional regulator	NA	NA	NA	NA	NA
SQE29123.1|4095993_4096914_+	Deoxyribokinase	NA	NA	NA	NA	NA
SQE29124.1|4096941_4098258_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
SQE29125.1|4098269_4099283_+	Deoxyribose specific mutarotase	NA	NA	NA	NA	NA
SQE29126.1|4099472_4099838_+|transposase	transposase	transposase	Q76S41	Shigella_phage	99.2	6.2e-59
SQE29127.1|4099795_4100701_+	IS2 element protein	NA	Q9ZXG3	Shigella_phage	98.0	2.6e-175
SQE29128.1|4101086_4101326_+|transposase	Putative transposase	transposase	Q6H9S5	Enterobacteria_phage	66.0	1.5e-13
SQE29129.1|4101536_4102793_-	PTS system EIIC component	NA	NA	NA	NA	NA
SQE29130.1|4102805_4103093_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
SQE29131.1|4103108_4103552_-	PTS system EIIA component	NA	NA	NA	NA	NA
SQE29132.1|4103822_4104854_+	transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.0	8.0e-19
SQE29133.1|4105380_4106301_-	maturase-related protein	NA	NA	NA	NA	NA
SQE29134.1|4107547_4107874_+|transposase	transposase	transposase	NA	NA	NA	NA
