The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	8740	89505	2254553	integrase,transposase	Mannheimia_phage(15.38%)	109	NA	NA
SPR02171.1|8740_8995_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02173.1|8981_9116_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02175.1|9210_9453_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02177.1|9724_10924_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
SPR02181.1|10913_11105_-	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
SPR02185.1|11229_12039_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02193.1|12277_12691_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02197.1|12650_14360_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.8	2.0e-30
SPR02210.1|14455_15028_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02218.1|15239_15365_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02222.1|15397_15577_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02227.1|15705_16263_+	4'-phosphopantetheinyl transferase sfp	NA	NA	NA	NA	NA
SPR02231.1|16378_16558_+	serine hydroxymethyltransferase	NA	NA	NA	NA	NA
SPR02233.1|16692_16929_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02246.1|17617_18637_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02251.1|18602_18860_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02255.1|18862_19393_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02261.1|19423_19711_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02267.1|19839_20322_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02271.1|20739_21954_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	26.4	4.0e-17
SPR02274.1|22160_22409_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02279.1|22408_22738_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR02281.1|22718_22871_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02285.1|22867_23356_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02290.1|23489_23816_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02296.1|23858_23987_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02301.1|24026_24404_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02307.1|24412_24904_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02316.1|24881_25169_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02320.1|25140_26778_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02326.1|26807_27665_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02332.1|27687_28071_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR02343.1|28067_28673_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR02358.1|28981_29347_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR02364.1|29327_29615_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR02368.1|29865_31374_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR02374.1|31483_31600_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02379.1|31599_32043_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02382.1|32054_32771_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02386.1|32767_33397_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02389.1|33591_34071_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02393.1|34070_35372_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02396.1|35355_35577_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02401.1|35789_36050_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR02405.1|36112_37123_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02408.1|37132_38104_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02413.1|38155_38707_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02418.1|39234_39354_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR02422.1|39434_41666_-	RNA-binding protein	NA	NA	NA	NA	NA
SPR02424.1|41916_42135_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR02429.1|42299_42506_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR02432.1|43150_43288_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02436.1|43390_43528_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02441.1|43517_43718_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02445.1|43714_43900_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02449.1|44405_44651_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SPR02452.1|44705_44987_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02456.1|45629_45950_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02460.1|45971_46853_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
SPR02464.1|46853_47000_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR02467.1|47105_47345_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR02481.1|47553_47910_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02484.1|48097_48643_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02488.1|48729_49305_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	29.4	2.1e-05
SPR02490.1|49525_49882_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
SPR02494.1|49938_51291_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	26.8	3.9e-05
SPR02499.1|52510_52615_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR02503.1|52670_52874_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR02507.1|53054_53315_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02510.1|53385_53577_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02530.1|53800_54697_+	lipase LipB	NA	A0A2I7SAF7	Vibrio_phage	28.2	1.5e-08
SPR02535.1|54983_55142_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02538.1|55153_55591_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02543.1|56080_59518_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR02547.1|60418_61087_+	DNA polymerase III subunit epsilon	NA	A0A1B2LRV5	Wolbachia_phage	50.0	2.8e-09
SPR02551.1|61762_63607_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.2	9.9e-36
SPR02554.1|63590_65366_-	DNA primase	NA	S5M810	Pseudoalteromonas_phage	45.3	2.7e-14
SPR02558.1|66176_67337_-	DNA-processing protein DprA	NA	S6BFL3	Thermus_phage	34.3	4.2e-24
SPR02565.1|67377_67980_-	peroxidase	NA	NA	NA	NA	NA
SPR02568.1|69417_69822_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02571.1|70038_70209_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02573.1|70422_70548_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02574.1|70528_70798_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02575.1|70809_71031_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02579.1|71498_71708_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02583.1|72045_72357_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR02586.1|72604_73663_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02595.1|74140_74827_-	ankyrin repeat-containing protein 13	NA	NA	NA	NA	NA
SPR02600.1|76696_76888_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR02605.1|76996_77497_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02608.1|77793_78108_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02613.1|78073_78436_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02616.1|78465_78663_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02620.1|78666_78792_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02624.1|78861_79032_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02628.1|79339_79570_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02632.1|79703_79832_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02642.1|80091_80475_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR02646.1|80409_81564_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR02650.1|81779_81908_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02663.1|82592_82730_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02668.1|82951_83413_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	24.8	2.7e-06
SPR02672.1|83649_84477_-	ankyrin repeat-containing protein	NA	A0A0M3PB69	Turkeypox_virus	23.4	3.7e-06
SPR02688.1|85040_85202_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02691.1|86246_86822_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02694.1|86863_87391_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02696.1|87391_87841_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02700.1|87925_88126_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02704.1|88260_89505_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	29.4	9.0e-17
>prophage 2
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	92690	133399	2254553	integrase,transposase	Indivirus(50.0%)	49	91715:91774	105615:106590
91715:91774	attL	TTTTTTATTCCATTCTCTTTAACACCAGTCAATAACAAAAGGTAATTAGGAGTTCGCTTG	NA	NA	NA	NA
SPR02740.1|92690_92885_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR02744.1|92958_93363_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR02749.1|93317_93974_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR02754.1|94413_94980_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	3.3e-14
SPR02760.1|96788_101129_+	ScaA autotransporter protein	NA	NA	NA	NA	NA
SPR02763.1|101338_101494_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02769.1|101608_102046_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02774.1|102160_102970_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	26.0	2.4e-18
SPR02777.1|103414_104071_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02782.1|104025_104430_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02787.1|104503_104698_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02790.1|104802_105126_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02795.1|105125_105545_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR02800.1|105842_106208_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02802.1|106105_106315_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02807.1|106482_106920_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
105615:106590	attR	CAAGCGAACTCCTAATTACCTTTTGTTATTGACTGGTGTTAAAGAGAATGGAATAAAAAATGAATATTAGACTTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTATTGCTGACAAATATCGAAATAGACGTAAAAGATTCGCTCTTAGATTTAATTTGATCTCTGGCATTTATAATTTTGAACTCTTTAACCAGTTTCGAAAGAAGTCTATTAGAGTTTTGAGATTTATGATCGGGCTTATTGCTTTAGTCAACGTTAATAATATATATGCAGTAGAATATGAGTTAGAAGCTGACAATTTACTAAAGCTTGAGATTTCTGATAGTGGGCCAACAAGAATTAATCTTAAAGATGAAAAAATTAATGATATTTTTATGTACCCTCAAAATGCATCTGAAGTTGTAGTTCATGAGTCCGGATTTTTGTTTATTGTTCCACGAGAAGAAGAAAACAAGGTTTATTTAACTGTAATAGGAGAATACAAAACAATTCAAGATTTAATGTTAATTTTTACTCCAAAAACTCCAAACCCTGTAATGCTTGTTAATGCTGCTACAGACACAGAGGAAGTAGAAATACTAAGAAAAAAATAAAACTTGCTTAAAATGCTAGTTTTTACTTCAAAGACCGGCAAGCTTAGAATCAAGCTTATTAAAACCACTTCAAAGTAAAATTTCATTGACCATGGAATAACTAGCATTAGGAGAATAATGCAAAATTTACTAATAAGCAATAACAATGTTCATATATAAAAAAACTCGACTAAATATGCTAAAACCTACATTTGGAATACAAATGATAATAGACTTCTTTCGAAACTAGACAATGATGTAGAATGGTGTTATAAATATGTGATTTGAAGTAATAATGAAATTCGATCAGATTAAAGAGTTAAAGGATGAAAAATTTCGTCGATTAACAGGAGTAAGGAAGTGGACATTTTCAAAGATGGTGGATATTTTGAGGAAGGCTGAT	NA	NA	NA	NA
SPR02811.1|107036_107294_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02814.1|107280_108012_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02819.1|108114_109530_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR02823.1|109662_110475_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02827.1|110497_110881_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR02831.1|110877_112572_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR02836.1|112583_113267_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02841.1|113263_113479_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02846.1|113496_113898_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02850.1|114092_114572_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02854.1|114571_117208_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02867.1|117220_117727_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02872.1|117736_118684_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02877.1|118735_119362_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02883.1|119854_120187_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02888.1|120216_121197_+	ankyrin repeat-containing protein 09	NA	A0A1V0S7M1	Shearwaterpox_virus	27.8	8.2e-05
SPR02892.1|121276_122476_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02896.1|122634_122928_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02902.1|122997_123303_-	ankyrin repeat-containing protein 17	NA	NA	NA	NA	NA
SPR05304.1|123330_123699_-	ankyrin repeat-containing protein 17	NA	NA	NA	NA	NA
SPR05310.1|124164_125328_-	guanosine polyphosphate pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	26.9	3.6e-07
SPR05315.1|125350_125488_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05321.1|125447_125906_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05325.1|125906_126530_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05330.1|126676_127198_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05335.1|127516_128008_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05506.1|128029_128356_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05515.1|128663_129122_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05578.1|129131_129413_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR05583.1|129332_131762_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05588.1|132033_132270_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05601.1|133050_133176_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05606.1|133198_133399_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 3
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	148623	198208	2254553	integrase,transposase,tRNA	Wolbachia_phage(40.0%)	47	167574:167607	190499:190532
SPR05921.1|148623_149598_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.9e-84
SPR05926.1|149665_150121_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05932.1|150398_153218_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05937.1|153484_155764_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05942.1|155747_156566_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05948.1|156617_157601_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05953.1|157652_159005_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05958.1|159815_160694_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR05963.1|160824_162582_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05966.1|162859_163315_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05971.1|163382_164345_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	5.1e-84
SPR05976.1|164465_165053_-	hydrolase	NA	NA	NA	NA	NA
SPR05981.1|165094_165589_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05990.1|165684_166542_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05995.1|166572_167142_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06000.1|167135_167285_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06005.1|167281_167530_-	Uncharacterised protein	NA	NA	NA	NA	NA
167574:167607	attL	TCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR06009.1|167651_167804_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR06016.1|168256_169498_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	36.4	1.2e-64
SPR06021.1|169437_169656_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06025.1|170962_171157_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06030.1|171334_171667_+	iron donor protein CyaY	NA	NA	NA	NA	NA
SPR06037.1|171659_173390_+	ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.6	2.1e-40
SPR06042.1|174492_174642_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06046.1|174711_175029_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06051.1|175075_175441_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06056.1|175499_175634_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR06060.1|176367_177879_-	ATPase AAA	NA	NA	NA	NA	NA
SPR06065.1|178139_178520_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06071.1|178556_180071_-	lipid II flippase MurJ	NA	NA	NA	NA	NA
SPR06076.1|180449_180599_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06082.1|181387_183142_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	38.4	1.5e-25
SPR06089.1|183179_184718_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
SPR06103.1|185293_185563_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06109.1|185552_185726_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06114.1|186110_187382_+|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
SPR06120.1|187444_188437_+	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA	NA
SPR06128.1|188689_189277_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06133.1|190091_190439_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR06138.1|190634_191225_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
190499:190532	attR	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGA	NA	NA	NA	NA
SPR06142.1|192183_193191_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR06148.1|193658_194444_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR06153.1|194478_196266_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
SPR06158.1|196460_196850_-	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
SPR06163.1|196880_197264_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
SPR06168.1|197582_197711_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06172.1|198085_198208_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 4
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	205602	316303	2254553	integrase,transposase,tRNA	Bodo_saltans_virus(15.38%)	115	228520:228554	291697:291720
SPR06317.1|205602_208044_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR06321.1|208040_209075_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.7	2.4e-31
SPR06327.1|209929_210409_+	transcription elongation factor GreA	NA	A0A248SJQ8	Salicola_phage	27.7	1.2e-06
SPR06332.1|210455_211355_+	RNA polymerase factor sigma-32	NA	A0A248SJA5	Salicola_phage	29.8	3.9e-30
SPR06337.1|212013_212142_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06341.1|212339_212816_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06347.1|213281_213464_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06351.1|213833_214001_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SPR06357.1|214130_214352_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06363.1|214624_214849_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SPR06368.1|214858_215146_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
SPR06374.1|215389_216262_+	EamA family transporter	NA	NA	NA	NA	NA
SPR06378.1|216279_217536_+	MFS transporter	NA	NA	NA	NA	NA
SPR06384.1|217659_218283_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	25.5	7.7e-09
SPR06398.1|218716_218992_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR06407.1|219414_221760_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR06412.1|221840_221960_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR06417.1|221989_222271_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	64.8	4.5e-17
SPR06421.1|223308_223794_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06427.1|224036_224201_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06431.1|224417_224726_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06436.1|224812_225187_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06441.1|225678_225957_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06446.1|226051_226171_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SPR06451.1|226331_226472_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06456.1|226871_227612_+	S26 family signal peptidase	NA	NA	NA	NA	NA
SPR06460.1|227667_228414_+	ribonuclease III	NA	A0A0P0YM82	Yellowstone_lake_phycodnavirus	34.5	2.4e-25
228520:228554	attL	ATATAGTCATTTACAATGAGGTTTGAGCATAGAAA	NA	NA	NA	NA
SPR06464.1|228680_229595_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
228520:228554	attL	ATATAGTCATTTACAATGAGGTTTGAGCATAGAAA	NA	NA	NA	NA
SPR06468.1|229866_230223_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR06473.1|230268_230778_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06479.1|231063_231192_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06485.1|231242_231365_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR06490.1|231705_232068_-	ribosome-binding factor A	NA	NA	NA	NA	NA
SPR06495.1|232098_234639_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	27.6	6.1e-28
SPR06500.1|234888_236391_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
SPR06505.1|236406_236889_-	ribosome maturation factor	NA	NA	NA	NA	NA
SPR06515.1|237426_238200_+	ubiquinone biosynthesis protein	NA	NA	NA	NA	NA
SPR06519.1|238196_239585_+	ubiquinone biosynthesis protein UbiB	NA	A0A0R6PKQ6	Moraxella_phage	25.9	3.8e-32
SPR06524.1|240827_240983_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06530.1|241021_241225_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR06535.1|241341_241800_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06540.1|242008_243469_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR06545.1|243471_244950_-|tRNA	glutamyl-tRNA(Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR06551.1|244949_245249_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR06556.1|245331_247068_-	RNase J family beta-CASP ribonuclease	NA	NA	NA	NA	NA
SPR06560.1|247181_247919_-	DNA-binding response regulator	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.5e-14
SPR06564.1|248711_249026_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06571.1|249359_251687_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06575.1|251776_252652_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06580.1|252884_253451_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06585.1|253871_254147_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06589.1|254206_255040_+|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.2	2.1e-17
SPR06593.1|255060_255531_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR06598.1|255527_255695_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR06603.1|255846_256761_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.8	3.3e-16
SPR06608.1|256916_257072_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06612.1|257171_257312_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06616.1|257519_257870_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06624.1|259854_260070_-	Uncharacterised protein	NA	NA	NA	NA	NA
258350:258384	attR	ATATAGTCATTTACAATGAGGTTTGAGCATAGAAA	NA	NA	NA	NA
SPR06628.1|260309_260462_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
258350:258384	attR	ATATAGTCATTTACAATGAGGTTTGAGCATAGAAA	NA	NA	NA	NA
SPR06632.1|260491_260812_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR06638.1|260845_261007_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR06643.1|261417_261852_-	membrane protein	NA	NA	NA	NA	NA
SPR06673.1|261860_262895_-	ferrochelatase	NA	NA	NA	NA	NA
SPR06678.1|262887_263916_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR06682.1|264734_264890_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06688.1|265007_265100_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06694.1|265699_267055_+	transcription termination factor Rho	NA	NA	NA	NA	NA
SPR06711.1|268177_269047_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06716.1|269035_269530_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06721.1|270127_271003_+	ankyrin repeat-containing protein	NA	Q6VZ29	Canarypox_virus	27.3	5.2e-11
SPR06725.1|270916_272119_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06733.1|272177_272705_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06738.1|272685_273015_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06742.1|273014_273416_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06747.1|273441_273918_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06752.1|274112_274469_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR06756.1|274468_274792_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06760.1|274859_275090_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06764.1|275086_275662_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06769.1|275771_276182_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06774.1|276609_276960_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06779.1|277392_279255_-	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
SPR06784.1|279244_280513_-	magnesium transporter	NA	NA	NA	NA	NA
SPR06789.1|281405_281522_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06791.1|281664_281937_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR06799.1|281971_282934_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR06803.1|283184_283850_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR06809.1|283850_283976_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06813.1|285283_285487_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06819.1|286028_286292_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06822.1|286357_286771_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06827.1|287877_290646_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06831.1|290901_291339_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06836.1|291280_291511_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06840.1|292539_292872_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06845.1|293204_294419_-	aspartate kinase	NA	NA	NA	NA	NA
SPR06850.1|294698_295190_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06856.1|295176_296919_-	potassium transporter	NA	NA	NA	NA	NA
SPR06861.1|297091_297664_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR06867.1|297660_298284_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06871.1|298642_298792_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06879.1|299954_300203_-	Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SPR06886.1|300433_304873_-	spoT ppGpp synthetase	NA	NA	NA	NA	NA
SPR06891.1|305644_307675_+	ribonuclease E/G	NA	NA	NA	NA	NA
SPR06913.1|308063_310913_-	cell surface protein	NA	NA	NA	NA	NA
SPR06918.1|311046_311712_-	guanylate kinase	NA	V9VFN5	Lactococcus_phage	37.7	1.3e-09
SPR06923.1|311900_312764_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06934.1|313084_313258_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06939.1|313438_313744_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06944.1|313879_314074_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06948.1|314146_314275_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06953.1|314234_314588_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR06958.1|314740_315616_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06963.1|315727_316303_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	323247	359709	2254553	tRNA,transposase,terminase	uncultured_Mediterranean_phage(100.0%)	46	NA	NA
SPR06999.1|323247_324669_-|terminase	terminase	terminase	A0A1B1IUW7	uncultured_Mediterranean_phage	30.7	4.3e-55
SPR07004.1|325000_325621_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
SPR07010.1|325620_326178_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SPR07015.1|326187_327288_+	GTP-binding protein YchF	NA	NA	NA	NA	NA
SPR07020.1|328172_328310_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07026.1|328323_328521_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07031.1|328530_328770_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07035.1|328756_328960_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07038.1|329078_329276_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07051.1|329287_329725_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07065.1|329797_330235_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07070.1|330414_330567_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07073.1|330707_332096_-	sodium:pantothenate symporter	NA	NA	NA	NA	NA
SPR07077.1|332111_333374_-	MFS transporter permease	NA	NA	NA	NA	NA
SPR07081.1|334244_334499_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07086.1|334770_334881_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07091.1|336535_337264_+	ATP synthase subunit A	NA	NA	NA	NA	NA
SPR07096.1|337320_337545_+	ATP synthase subunit C	NA	NA	NA	NA	NA
SPR07101.1|337552_338050_+	ATP synthase subunit B	NA	NA	NA	NA	NA
SPR07106.1|338062_338530_+	ATP synthase subunit b	NA	NA	NA	NA	NA
SPR07111.1|338873_339059_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07115.1|339069_339540_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR07119.1|339496_339610_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07124.1|340181_340349_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07129.1|342281_342959_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07133.1|343018_344371_+	Outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
SPR07138.1|344887_345415_-	peptidase A8	NA	NA	NA	NA	NA
SPR07143.1|345689_346484_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
SPR07148.1|346597_346810_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07153.1|346806_347238_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07158.1|347246_347399_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07163.1|347395_347785_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07168.1|347929_348100_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07172.1|348661_349417_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07176.1|349376_349751_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07181.1|349762_350200_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07186.1|350627_351260_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07191.1|351512_352916_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR07195.1|353126_353552_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07200.1|353563_354280_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07205.1|354276_354492_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07209.1|354509_354911_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07213.1|355105_355585_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07218.1|355584_358221_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07222.1|358233_358740_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07227.1|358749_359709_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	367988	415261	2254553	transposase	Streptococcus_phage(30.0%)	53	NA	NA
SPR07277.1|367988_368915_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.7	1.7e-84
SPR07283.1|369032_369455_-	hydrolase	NA	NA	NA	NA	NA
SPR07288.1|369674_370169_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR07310.1|370267_371125_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR07316.1|371155_371719_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR07321.1|371882_372062_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR07325.1|372429_373239_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	5.3e-18
SPR07330.1|373244_373748_-	membrane protein	NA	NA	NA	NA	NA
SPR07335.1|373850_374495_-	ankyrin	NA	R4TPX0	Phaeocystis_globosa_virus	26.4	4.0e-08
SPR07339.1|374532_374928_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR07344.1|375314_376751_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	7.9e-73
SPR07348.1|377322_377562_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR07353.1|377728_378166_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07358.1|378177_378552_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07362.1|378649_378883_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR07366.1|379083_379239_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07371.1|379784_380102_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07376.1|380365_380626_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07381.1|381432_381981_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR07386.1|383503_383689_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07391.1|384513_384750_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07396.1|384744_384909_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR07401.1|385019_385469_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	35.2	1.1e-17
SPR07406.1|385564_385939_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07410.1|385950_386388_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07414.1|387414_387684_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR07419.1|387724_388051_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR07425.1|388188_388857_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR07430.1|388960_389710_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
SPR07435.1|389928_391299_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	33.2	3.4e-41
SPR07440.1|391357_392833_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07445.1|392924_395258_-	ScaD autotransporter protein	NA	NA	NA	NA	NA
SPR07450.1|395831_396794_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR07455.1|396843_397062_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07460.1|397006_397243_+	Uncharacterised protein	NA	A0A0U4J920	Pseudomonas_phage	66.2	1.2e-18
SPR07465.1|397419_397611_+	CRISPR-associated endonuclease Cas9	NA	NA	NA	NA	NA
SPR07471.1|397776_397911_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07477.1|398123_399833_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07481.1|399841_401290_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.5	2.6e-71
SPR07486.1|401640_402147_+	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	32.2	1.4e-11
SPR07491.1|402243_402747_+	membrane protein	NA	NA	NA	NA	NA
SPR07495.1|402769_402910_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR07500.1|403119_403722_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR07505.1|403820_404315_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR07508.1|404534_404954_+	hydrolase	NA	NA	NA	NA	NA
SPR07512.1|405074_406037_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
SPR07516.1|406113_406389_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR07521.1|406687_407653_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07526.1|407722_408178_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07529.1|408456_411303_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07535.1|411569_413615_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07541.1|413611_414238_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07545.1|414289_415261_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	453481	539869	2254553	integrase,transposase,tRNA,capsid	uncultured_Mediterranean_phage(16.67%)	90	474487:474528	531029:531070
SPR07700.1|453481_453820_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07704.1|453819_454488_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07709.1|454497_456252_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07714.1|456257_457403_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07719.1|457425_460065_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07724.1|460064_460520_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07730.1|460473_461367_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07735.1|461363_462047_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07741.1|462058_463753_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07746.1|463749_464133_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR07750.1|464155_465100_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07755.1|465133_465307_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07760.1|465390_466050_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR07765.1|466046_468536_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07770.1|468516_468846_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07774.1|468845_470177_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07778.1|470318_470546_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07783.1|470891_471380_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07787.1|471345_471738_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07793.1|471737_472061_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07799.1|472379_473519_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR07802.1|474122_474464_-|integrase	integrase	integrase	NA	NA	NA	NA
474487:474528	attL	AATAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR07807.1|474630_475506_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	28.1	5.2e-11
SPR07812.1|475871_476126_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07816.1|476184_476397_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07821.1|476635_476944_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR07826.1|477162_477330_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07830.1|477418_477796_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07835.1|477831_478182_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07839.1|478650_478779_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07844.1|478890_479817_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	41.3	4.5e-45
SPR07850.1|479900_482570_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	23.6	3.2e-27
SPR07855.1|482622_484155_-	ATP/ADP translocase	NA	NA	NA	NA	NA
SPR07860.1|484520_485378_+	rRNA (cytidine-2'-O-)-methyltransferase	NA	NA	NA	NA	NA
SPR07865.1|485379_486669_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.9	2.7e-101
SPR07870.1|486646_487405_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	6.1e-32
SPR07875.1|487394_487529_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07879.1|487559_488156_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR07884.1|488162_488960_+	chromosome partitioning protein ParA	NA	F0PIG8	Enterococcus_phage	33.5	1.9e-12
SPR07889.1|488971_489853_+	chromosome partitioning protein	NA	A0A0F7L836	uncultured_marine_virus	24.7	1.9e-05
SPR07895.1|490238_490577_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07898.1|490749_490878_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07904.1|491253_491490_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07909.1|491725_492280_+	peptidase U35	NA	I6S2W2	Marinomonas_phage	43.8	2.9e-23
SPR07915.1|492291_493407_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	40.3	4.9e-54
SPR07920.1|493440_493986_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07923.1|493987_494329_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07928.1|494328_494754_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07933.1|494746_495349_+	TIGR02217 family protein	NA	NA	NA	NA	NA
SPR07938.1|495361_496165_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07942.1|496263_496692_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07947.1|496899_497283_+	glutaredoxin	NA	NA	NA	NA	NA
SPR07952.1|497720_499319_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07957.1|499980_501621_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07961.1|501661_501964_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07966.1|502592_503519_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07972.1|503685_505134_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.3	3.7e-70
SPR07976.1|505493_505994_+	ankyrin	NA	Q9JML4	Wolbachia_phage	46.7	2.2e-06
SPR07981.1|506095_506518_+	membrane protein	NA	NA	NA	NA	NA
SPR07998.1|506602_507412_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.4e-18
SPR08002.1|507943_508660_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08008.1|509008_509737_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08014.1|509758_510616_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08018.1|510716_511292_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR08022.1|511367_512168_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08028.1|512316_512754_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08032.1|512765_513140_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08037.1|513816_514047_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
SPR08042.1|514055_514388_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SPR08046.1|515987_516344_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08063.1|516660_518949_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	43.0	3.9e-74
SPR08067.1|519039_519411_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08072.1|519443_521111_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.9	6.2e-45
SPR08077.1|521251_522085_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08082.1|522742_523138_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08087.1|523345_523765_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08091.1|524164_524905_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08096.1|524913_526362_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	35.9	2.6e-68
SPR08101.1|526667_526949_+	membrane protein	NA	NA	NA	NA	NA
SPR08105.1|528075_530781_+	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	32.8	1.8e-57
SPR08110.1|531659_533477_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.7	7.1e-188
531029:531070	attR	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTATT	NA	NA	NA	NA
SPR08115.1|533499_534489_+	ribonucleotide-diphosphate reductase subunit beta	NA	M1I8A4	Pelagibacter_phage	53.5	2.2e-98
SPR08119.1|534772_534952_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR08124.1|535252_535489_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08129.1|535599_536448_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR08133.1|537388_538057_-	membrane protein	NA	NA	NA	NA	NA
SPR08138.1|538289_538691_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08142.1|538804_538999_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08147.1|539044_539482_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08151.1|539740_539869_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 8
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	551880	591486	2254553	integrase,transposase,tRNA	Pseudomonas_phage(33.33%)	47	553444:553503	591527:594704
SPR08244.1|551880_552831_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	5.9e-85
SPR08249.1|552951_553251_-	hydrolase	NA	NA	NA	NA	NA
SPR08254.1|553240_553432_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
553444:553503	attL	AAAATTGGTCTTCTAAGGCAGATAGTATCAGTATGAAGATTTATATAGGTTTGGCATAAT	NA	NA	NA	NA
SPR08259.1|553610_554030_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08264.1|554429_555170_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08269.1|555178_556609_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	36.9	7.8e-65
SPR08274.1|557016_557517_+	ankyrin	NA	NA	NA	NA	NA
SPR08278.1|557614_558118_+	membrane protein	NA	NA	NA	NA	NA
SPR08283.1|558121_558262_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR08287.1|558609_558873_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08292.1|558992_559394_+	histidine kinase	NA	NA	NA	NA	NA
SPR08297.1|559514_559784_+	histidine kinase	NA	NA	NA	NA	NA
SPR08301.1|559798_559936_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08306.1|560122_560410_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08311.1|560488_560605_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08316.1|560680_561466_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08321.1|561496_562354_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08326.1|562452_562947_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08331.1|562988_563126_+	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR08335.1|563213_563324_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08340.1|563542_563719_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08344.1|563721_563946_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08348.1|564203_564368_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08353.1|564546_565128_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	40.0	4.4e-06
SPR08358.1|565305_566871_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08361.1|566874_567339_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08366.1|567452_567974_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08371.1|568006_568237_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08376.1|568293_568548_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08404.1|568817_569114_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.7	8.4e-06
SPR08410.1|571618_572014_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08415.1|572017_572263_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08420.1|572685_573003_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08424.1|574108_574255_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08429.1|574684_575968_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08434.1|576608_578477_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
SPR08439.1|578618_579272_-	thymidylate kinase	NA	Q2Z0N0	Pseudomonas_phage	35.8	4.4e-23
SPR08444.1|579264_580338_-	cell division protein ZapE	NA	NA	NA	NA	NA
SPR08450.1|580408_581092_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08454.1|581100_582465_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
SPR08458.1|582530_585263_-	DNA polymerase I	NA	D9ZNH3	Clostridium_phage	29.9	6.3e-39
SPR08463.1|585635_587087_-	sodium:pantothenate symporter	NA	NA	NA	NA	NA
SPR08469.1|587861_588692_+	protein disulfide-isomerase	NA	NA	NA	NA	NA
SPR08474.1|589231_589621_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08478.1|590277_590685_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08481.1|590638_591094_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08485.1|591129_591486_-|transposase	transposase	transposase	NA	NA	NA	NA
591527:594704	attR	AAAATTGGTCTTCTAAGGCAGATAGTATCAGTATGAAGATTTATATAGGTTTGGCATAATGATTTTTGTCAACCTTTTGTCAACCTTTTGCATAAAAATTTGATGGTAATTTGTAAAAAAATTATTTTCTAAAACACCTACTATAGCTGTATTTTTGGAGATGAAAAATGCGTCCTGTAGTATTCGATTTTTTAGCTAATAGTTGTAATATTTTTAAAAAAAATAGTAACAATAATGACACAATATTTTATAACTTTATTGGAAATATCATTCCACCAGAATGGAGAAAGCTAACTGGAGACAATGGAAAAGCATTAAGTAAAACATCTAAACAGCTTTTATCATTTATAGTATTTAGACTACATATTTATTACAACAAAGATATAGATGAATTACAAGAAAGTTATCAGCTTTATGAAGATAAGCTGAATGTTTGTCAAAGAAGAGTTAGGCAATGCTTAGTAGAATTAAGAGATGCAGGTTTTATTGAAATTGAAAATAGGACAATCATTAAAGACAATGTTAAGTTACGTAATGTCCCTTGCATAAAAATTCTGAAAAATTTTCAGCACTATAGTGAAAAATGAAAAGAAGAAAATATAGCCTTACCAGAAAAAAATTTTCGTCCCAACCTGAAAGAAATTTCAGGTCAACCTGAAACTTTTTTCAGGGACATATATAGATATATAAAAAAATCTAATAGATCTAGATCTACTGAAGGTGAGTTAGTAGAGAATAAAAAAAATGAAAATGAAGAACAAAATTTTCAAAATGTTGATGATTTTGAAAATGATATACAGACTTCAACTAAAAATTGCAATCAAGACATTAAATCACTAATAACAAAGATTCTCAAGTCTTCGAATGGTAAAAAAGAATGGTTCAAAAGGTACAGGCTAGAAGACTTTTACCCACTAACACCAGAAGATGTAGTTACACTGCAACATAAGTCCGATAGAGGTTTTAACATATACTTTATCAACAAATTGCTATTAAAGCTAGCAGGCCGATCTCCGGATTATCATTTTGGCTGTAAGGCATCAGTTTTAAACTATGTAGCACAAGCGTTAGCAAATGAATTACGAACTACTGATCAGGCAAATAGAGACAACTGTGGATTTGATAACGAATTTAATAAGGAAAAATATCTTACTCAAATTGAAACAAGCGCAAATCTTAGTAAGGAAAGTCAGTTGAAGCATAAAATTGCTGGTTCTTTTGAAGCAGCTATGGCTTATCAAATTTTGACTTCTTGTAGTTTTGGGCCAGCAGTTCGAACTAGGTTTTTTGTTAAGTTGCTTAAAAATATCACACTAACAGAATGTGACGAATCAAAGATATTACAAGCTGTACAAGATGTATATGGATACGAAATTCAAGAATTACAAGTTACACCATTTGAGCAACTCAAAACTGTTTCACAGAAACAAATCAATGAAGAAGAGTATCTCTTGAATCTCAGTAAACAACTGGGCTATAACTCAACTTGGTACAAAGTACGAGAATCTTTGATTAAAAGTTATGGTCAAACTATTGATAAAAAATACTTTAGCGAATTGAACATTATAAATGAAGATAATGTTAGTAAAAAAATATTCATTAAAGCTAAAACAGGATTTGCTGATAGTTACATCACAAGCAACCATATGGAAAATCTTGCGCACGCTTTTAAAGCTCAAGGATTTTCTTTCGAGTTAGTTAAGTTTAGTAATTTTAATAAAATTTAAAGGGTGATATGGAAAAAGATCTTGCAAAGATTGCTCCAAATAATATTCAAGCAGAGCAAATGATCCTTGGAGCAATTCTGATTAACAATCGTGCGCTATATAACATTAACGAATTTTTACTGCCGGAACATTTTTATGAACCATTACATGGTAAAATATACAAGTCAATTAATCTCATTATTAGTAAAGGAATTAGCGCTACTGTAATTTCGCTCAAAAATATGCTAGGCAATGAACTCGCATTTGAGGAAATAGGTGGAGTAGATTATCTAGCTAAACTTACAACTTTAGCATTAAGTATAGTTAATGTTAATGAGTACGGCAAAATAGTATATGACCTTGCGCTGCGGCGTTATTTAATTGAAATTGGAGAAAAAATAGTAACAAATGCATATTCTTCTACTTTAGCAGATTTAGCTATAACTCAGATCGAAACTGCTGAATCTCAATTATATGATCTAGGTGCAAGAGGAACTTTAAGTAAAGGATTTACAAAATTACAAACTTCAATTGAAGAATCATGGACATCAATTTCATCTGCTATTAAAAATAAAAACTCTATTAATGGTATTAGTAGTGGACTACTTGACCTTGATTCAAAGCTTGGAGGATTTAAAAATTCTGACCTAATAATATTAGCTGGCAGGCCTTCAATGGGTAAAACTGCTTTAGGAGTTAACTTAGCAATAAATGCTTGTAAATATTTTTTATCATCATCCACTCAACAAAATAGCAAAGTTTCTAATATAACACCATCAGTTGGATTCTTTTCTTTAGAAATGTCATCTCAGCAAATCTCTACTCGAATTCTTTCTATAGAATCAGAAATTAATAGCTCTGCATTATTTAACGGTAAAATAGGTGAACAAGATGTTGATAAGTTAAAGACTGTACAAGACGAAATACAAAAGTGGAATTTTTTTATAGATGATGCTCAGGCAATCTTGATATCTGCAATTAGATCTCGAGCTTGTAGACTTAAACGTACTCATAATTTAGCAATATTATTTATTGATTATTTACAGCTAATAAAAATTGATAACAGAAGAAGTCAGTATAATAGAGTGCAGGAGATTTCTGAAATTACTCAAAGCTTAAAAGCTCTTGCTAAAGAGCTCAATATTTCAATAATTGCTTTATCTCGATTGTCTAGAGCTGTAGAACAAAGGGCAGATAAAAAGCCTATTCTCTCAGATCTACGAGAATCAGGTTCAATTGAACAGGATGCAGATATTGTAATGCTCATATATCGGGACGAATATTATCTATCTAGATCAGAACCGAATCCAGGTACTCCAGAATACACAGAATGGGTTACAAAACAAAATAAATGTTATAACACTGCTGAAATAATTGTTGCTAAACACCGTAATGGGCCAGTTGGTACAGATAGGTATTCTAAATTTGGCAATATTGTTAAAAACTCTCAGCAAGGTTAATAAACACTAGAT	NA	NA	NA	NA
>prophage 9
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	601741	631685	2254553	transposase	Wolbachia_phage(20.0%)	33	NA	NA
SPR08562.1|601741_602764_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR08566.1|602871_603093_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR08570.1|603366_604089_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08573.1|604154_604295_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08578.1|604620_604884_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR08583.1|605052_605472_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08588.1|605494_606745_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08593.1|606817_607276_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08597.1|607484_607724_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR08600.1|607829_607976_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR08605.1|607976_608858_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
SPR08611.1|608879_609200_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08614.1|609871_610141_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08618.1|610144_611890_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08623.1|611946_612603_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08628.1|612624_612729_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08633.1|613000_615673_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR08638.1|615724_616648_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08642.1|616657_617533_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08646.1|617729_618926_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR08651.1|618897_619185_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR08656.1|619162_619771_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR08661.1|621006_621231_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
SPR08665.1|621264_621870_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
SPR08670.1|621996_622743_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR08675.1|622841_625559_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	35.3	6.2e-103
SPR08680.1|625592_626873_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.8	1.2e-109
SPR08684.1|627261_627390_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08687.1|627379_627838_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08692.1|627889_628105_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08698.1|628094_628325_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08702.1|629344_630208_-	aminomethyltransferase	NA	NA	NA	NA	NA
SPR08708.1|630794_631685_+|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	58.4	1.0e-86
>prophage 10
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	648833	698063	2254553	protease,transposase,tRNA	Pseudomonas_phage(20.0%)	50	NA	NA
SPR08791.1|648833_649172_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08795.1|649110_649320_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08800.1|649464_649566_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08804.1|650572_651514_-	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR08809.1|651461_652088_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
SPR08814.1|652084_653788_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
SPR08819.1|654630_655710_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	37.5	5.3e-05
SPR08822.1|655913_656936_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08827.1|656932_657853_+	GTPase Era	NA	NA	NA	NA	NA
SPR08832.1|658231_658597_-	membrane protein	NA	NA	NA	NA	NA
SPR08837.1|658693_658900_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SPR08842.1|659183_659711_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR08844.1|660109_660916_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR08848.1|660922_661768_+	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
SPR08853.1|661849_662323_+	phosphohistidine phosphatase	NA	NA	NA	NA	NA
SPR08858.1|662334_665802_+	ATP-dependent DNA helicase UvrD	NA	NA	NA	NA	NA
SPR08863.1|665979_667179_+	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR08867.1|667231_668440_+	poly(A) polymerase	NA	A0A2L0UZ92	Agrobacterium_phage	41.6	2.7e-34
SPR08872.1|668436_669333_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR08877.1|669868_670177_+	DNA-binding protein	NA	A7KV42	Bacillus_phage	37.1	2.0e-10
SPR08881.1|670359_671235_+	Chaperone SurA	NA	NA	NA	NA	NA
SPR08884.1|671353_672175_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
SPR08888.1|672235_673585_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
SPR08892.1|673694_674756_+|protease	zinc metalloprotease	protease	NA	NA	NA	NA
SPR08897.1|674768_677087_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
SPR08901.1|677109_677436_+	thiol reductase thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.6	2.0e-16
SPR08906.1|677531_677783_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08909.1|678620_679415_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
SPR08913.1|680163_680601_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08918.1|680916_681264_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08922.1|681382_681502_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08927.1|681757_682015_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR08931.1|682080_682344_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08940.1|682899_684108_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08943.1|684595_684949_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08948.1|685206_685335_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08952.1|685555_686533_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08957.1|686781_687657_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08962.1|687945_688137_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08967.1|688439_688667_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08971.1|689525_691466_-	primosomal protein N'	NA	NA	NA	NA	NA
SPR08975.1|691652_693188_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	38.8	8.6e-94
SPR08979.1|693200_693989_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR08983.1|694937_695804_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
SPR08993.1|695883_696036_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR08998.1|696202_696310_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09003.1|696698_696977_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09007.1|696985_697567_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09012.1|697628_697874_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR09017.1|697922_698063_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 11
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	703182	746703	2254553	integrase,transposase	Bacillus_phage(25.0%)	57	697843:697876	759823:759856
697843:697876	attL	TTATAGTCATTTACAATGAAGTTTGCGTATAAAA	NA	NA	NA	NA
SPR09051.1|703182_703356_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09054.1|703627_703813_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09058.1|704760_705015_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR09062.1|705507_705660_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09067.1|705671_706109_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09070.1|706116_706230_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09073.1|706274_706787_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09077.1|707137_707512_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09080.1|707523_707961_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09084.1|707968_708196_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR09088.1|708374_708503_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09092.1|708743_709238_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09096.1|709303_709567_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09099.1|710229_711981_-	glycosyl transferase	NA	NA	NA	NA	NA
SPR09102.1|711965_713276_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09106.1|713254_714502_-	cell division protein FtsA	NA	NA	NA	NA	NA
SPR09110.1|714795_715497_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
SPR09113.1|715700_716147_+	iron-sulfur-binding protein	NA	NA	NA	NA	NA
SPR09115.1|716158_717445_+	aminotransferase class V-fold PLP-dependent enzyme	NA	H7BUW1	unidentified_phage	38.2	8.7e-31
SPR09119.1|717459_718731_+	cysteine desulfurase	NA	NA	NA	NA	NA
SPR09124.1|718774_719200_+	iron-sulfur cluster scaffold-like protein	NA	A0A218MKD1	uncultured_virus	73.8	2.4e-46
SPR09128.1|719209_719584_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7N5	Lake_Baikal_phage	42.9	2.1e-14
SPR09131.1|719596_720100_+	co-chaperone HscB	NA	NA	NA	NA	NA
SPR09134.1|720086_721940_+	molecular chaperone HscA	NA	F2Y0P3	Organic_Lake_phycodnavirus	35.8	2.3e-69
SPR09139.1|721956_722301_+	(2Fe-2S) ferredoxin	NA	NA	NA	NA	NA
SPR09142.1|722684_723002_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09146.1|723121_723562_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09149.1|723836_724004_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR09152.1|724005_724371_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR09155.1|724378_724816_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09159.1|724827_725202_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09163.1|725188_725803_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR09167.1|725962_726196_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR09170.1|726185_726872_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR09173.1|726912_727164_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09177.1|728133_728811_+	PqqC-like protein	NA	NA	NA	NA	NA
SPR09181.1|729011_729302_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09186.1|729389_729587_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09189.1|730093_730459_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
SPR09194.1|730478_730685_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
SPR09199.1|731126_733019_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.8	6.0e-89
SPR09203.1|733191_734358_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR09207.1|734509_736000_+	trigger factor	NA	NA	NA	NA	NA
SPR09212.1|736488_738159_-	multidrug ABC transporter permease	NA	W8CYL7	Bacillus_phage	28.6	4.4e-43
SPR09216.1|738267_739017_-	transcriptional regulator	NA	W8CYM9	Bacillus_phage	28.4	4.5e-11
SPR09221.1|739298_739655_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
SPR09226.1|739700_740009_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
SPR09230.1|740051_740579_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
SPR09234.1|740730_742206_+	ATPase AAA	NA	NA	NA	NA	NA
SPR09239.1|742405_742759_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09243.1|742770_742899_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09247.1|743016_743145_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09251.1|745041_745161_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09256.1|745168_745606_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09261.1|745617_745752_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09266.1|745838_746345_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	5.1e-11
SPR09270.1|746583_746703_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
759823:759856	attR	TTATAGTCATTTACAATGAAGTTTGCGTATAAAA	NA	NA	NA	NA
>prophage 12
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	759575	794512	2254553	integrase,transposase	Streptococcus_phage(33.33%)	31	759571:759599	777556:777584
759571:759599	attL	AAGATTTAGCAAATTGAGTAATTTGATTT	NA	NA	NA	NA
SPR09308.1|759575_759905_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09313.1|760157_761690_+	ATP/ADP translocase	NA	NA	NA	NA	NA
SPR09318.1|761842_763387_+	ATPase AAA	NA	NA	NA	NA	NA
SPR09322.1|763386_765192_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09327.1|765211_766231_+	octaprenyl-diphosphate synthase	NA	A0A1V0SE37	Indivirus	26.4	3.9e-10
SPR09329.1|766450_770077_-	Secreted effector protein PipB2	NA	NA	NA	NA	NA
SPR09332.1|770592_772863_-	ScaE autotransporter protein	NA	NA	NA	NA	NA
SPR09336.1|773075_773219_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09340.1|773310_773439_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09345.1|773435_774086_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09350.1|774235_774640_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR09354.1|774820_775165_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	46.0	1.0e-18
SPR09357.1|775289_775604_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09362.1|775622_776273_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09366.1|776443_776737_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09370.1|776944_777340_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09375.1|777336_777555_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR09380.1|778004_778694_-	Uncharacterised protein	NA	NA	NA	NA	NA
777556:777584	attR	AAGATTTAGCAAATTGAGTAATTTGATTT	NA	NA	NA	NA
SPR09385.1|779500_780766_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SPR09390.1|780947_782309_+	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR09395.1|782392_783364_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09400.1|784094_785774_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09406.1|785782_787231_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.3	3.7e-70
SPR09411.1|787590_788091_+	ankyrin	NA	Q9JML4	Wolbachia_phage	46.7	2.2e-06
SPR09416.1|788192_788615_+	membrane protein	NA	NA	NA	NA	NA
SPR09417.1|788699_789509_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.4e-18
SPR09422.1|790040_790757_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09427.1|791105_791834_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09432.1|791855_792713_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09437.1|792813_793392_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR09440.1|793513_794512_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.1e-84
>prophage 13
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	810848	842567	2254553	transposase	Pseudomonas_phage(20.0%)	40	NA	NA
SPR09569.1|810848_811688_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09573.1|811647_812601_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR09578.1|812549_812702_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09582.1|812893_813499_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09588.1|813665_814244_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09591.1|814215_815346_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09596.1|815330_816218_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09601.1|816186_816648_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09607.1|817320_818544_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	38.2	3.3e-64
SPR09611.1|818544_818691_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR09615.1|818796_819036_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR09620.1|819244_819700_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09624.1|819767_820742_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.0e-84
SPR09629.1|820863_821442_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR09633.1|821542_822400_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR09638.1|822374_823049_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR09641.1|823061_823151_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR09646.1|823503_824313_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.8e-19
SPR09650.1|824316_824820_-	membrane protein	NA	NA	NA	NA	NA
SPR09655.1|824917_825562_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	28.7	2.3e-08
SPR09660.1|825596_826172_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR09662.1|826406_826538_-	DNA helicase	NA	NA	NA	NA	NA
SPR09667.1|826551_827070_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09671.1|827172_827637_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09675.1|828076_828472_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09678.1|828789_829047_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR09682.1|829081_829213_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09686.1|829326_829611_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09691.1|829654_829885_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09696.1|830176_830608_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09701.1|830619_830994_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09706.1|831623_832376_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09711.1|832532_834581_+	competence protein ComEC	NA	NA	NA	NA	NA
SPR09715.1|835241_836828_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
SPR09720.1|836968_838438_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
SPR09724.1|838474_840307_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09729.1|840744_841083_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.6	4.8e-05
SPR09731.1|841219_841348_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09736.1|841799_842297_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09740.1|842303_842567_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 14
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	871701	888173	2254553	integrase,transposase,tRNA	Streptococcus_phage(33.33%)	22	886588:886603	892085:892100
SPR09924.1|871701_872244_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR09928.1|872216_872441_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR09933.1|873375_873924_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09938.1|873915_874116_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09942.1|874170_874674_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR09947.1|874950_875406_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09952.1|875707_877156_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	2.0e-71
SPR09957.1|877164_877905_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09962.1|878304_878724_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09967.1|878998_879328_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09971.1|879317_879689_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09974.1|879839_880046_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR09981.1|880109_880280_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR09985.1|880838_881756_-	peptidase S49	NA	Q9JMP1	Wolbachia_phage	27.8	5.3e-14
SPR09989.1|882047_883397_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR09994.1|883565_884402_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR09999.1|884542_884884_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10003.1|884858_885314_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10009.1|885734_885944_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10012.1|886011_886173_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10016.1|886165_886297_-|integrase	integrase	integrase	NA	NA	NA	NA
886588:886603	attL	CTTTATAGAACCTACT	NA	NA	NA	NA
SPR10020.1|886934_888173_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	25.0	6.9e-17
SPR10020.1|886934_888173_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	25.0	6.9e-17
892085:892100	attR	AGTAGGTTCTATAAAG	NA	NA	NA	NA
>prophage 15
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	905980	975939	2254553	integrase,transposase,tRNA	Pseudomonas_phage(23.08%)	101	917301:917330	968208:968244
SPR10140.1|905980_906928_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10144.1|906979_908248_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10149.1|908355_909420_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10154.1|909977_910556_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10158.1|910527_911658_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10161.1|911642_912530_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10165.1|912498_912960_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10170.1|913632_913953_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10175.1|913974_914856_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
SPR10180.1|914856_915003_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR10186.1|915108_915348_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR10189.1|915556_916012_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10194.1|916095_916239_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10199.1|916334_917231_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
917301:917330	attL	TATAGTCATTTACAATGAGGTTTGAGCATA	NA	NA	NA	NA
SPR10203.1|917477_917741_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
917301:917330	attL	TATAGTCATTTACAATGAGGTTTGAGCATA	NA	NA	NA	NA
SPR10207.1|917821_918760_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	58.6	1.0e-84
SPR10210.1|918881_919631_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10215.1|919729_920587_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10220.1|920617_921403_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10225.1|921478_921595_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10230.1|921673_921961_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10235.1|922147_922285_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10238.1|922299_922569_-	histidine kinase	NA	NA	NA	NA	NA
SPR10243.1|922689_923091_-	histidine kinase	NA	NA	NA	NA	NA
SPR10247.1|923210_923474_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10252.1|923821_923962_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR10256.1|923965_924469_-	membrane protein	NA	NA	NA	NA	NA
SPR10260.1|924566_925067_-	ankyrin	NA	NA	NA	NA	NA
SPR10264.1|925425_926856_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	36.9	7.8e-65
SPR10268.1|926864_927605_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10273.1|928003_928423_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10278.1|928630_928987_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10283.1|929027_929831_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR10288.1|930566_930992_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	37.4	2.1e-18
SPR10289.1|931281_931476_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10294.1|931602_931719_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10298.1|931730_931928_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10302.1|932191_933106_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.2	5.7e-85
SPR10306.1|933173_933629_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10311.1|933837_934329_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR10316.1|934329_935211_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
SPR10320.1|935232_935553_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10324.1|936195_936477_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10329.1|936531_936777_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SPR10334.1|937282_937468_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10339.1|937464_937665_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10344.1|937654_937792_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10349.1|937894_938032_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10353.1|938676_938883_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR10358.1|939448_939688_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
939149:939178	attR	TATAGTCATTTACAATGAGGTTTGAGCATA	NA	NA	NA	NA
SPR10363.1|941089_941437_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
939149:939178	attR	TATAGTCATTTACAATGAGGTTTGAGCATA	NA	NA	NA	NA
SPR10367.1|941808_942021_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10372.1|942079_942334_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10376.1|942699_943575_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	28.1	5.2e-11
SPR10381.1|943741_944083_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR10385.1|944686_945826_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR10388.1|946144_946468_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10393.1|946467_946860_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10398.1|946825_947314_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10403.1|947659_947887_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10407.1|948028_949174_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10412.1|949257_949734_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10416.1|949730_949883_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR10421.1|949863_950283_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR10425.1|950282_950471_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10430.1|950636_951140_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	30.8	7.6e-15
SPR10434.1|951248_951716_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10439.1|951849_952050_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10443.1|952134_952533_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR10447.1|952553_952880_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10452.1|952916_953372_-|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	30.8	1.5e-06
SPR10456.1|953476_953644_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10460.1|954675_955476_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR10464.1|955755_956673_+	cation-efflux pump	NA	NA	NA	NA	NA
SPR10469.1|956734_957190_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SPR10474.1|957265_959365_+	DNA ligase (NAD(+)) LigA	NA	A0A1W6DX16	Sphingobium_phage	36.3	2.5e-99
SPR10480.1|959361_961134_+	aminopeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	36.3	1.5e-97
SPR10484.1|961773_964245_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10489.1|964744_965269_+	Uncharacterised protein	NA	K4ICR8	Acidithiobacillus_phage	26.8	5.5e-08
SPR10494.1|965492_965678_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10496.1|965882_966341_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10501.1|966306_966465_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10506.1|966479_966683_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10511.1|966736_966871_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10515.1|966893_967133_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10520.1|967132_967225_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10523.1|967260_967389_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10528.1|967505_967604_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10533.1|968246_968546_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10536.1|968742_969195_-	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
SPR10541.1|969583_969772_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10545.1|969968_970325_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10548.1|970532_971024_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR10552.1|971024_971906_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
SPR10557.1|971927_972248_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10562.1|972671_973001_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10565.1|973136_973613_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10570.1|973644_974136_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10575.1|974149_974815_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10580.1|975022_975223_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR10585.1|975414_975939_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 16
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	992375	1034928	2254553	integrase,transposase,tRNA	Streptococcus_phage(50.0%)	55	997476:997517	1016030:1016071
SPR10645.1|992375_992771_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10650.1|992987_993245_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10655.1|994024_994222_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10659.1|994233_994410_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10663.1|994763_994955_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10668.1|994957_995260_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SPR10671.1|995360_996428_+	rod shape-determining protein	NA	NA	NA	NA	NA
SPR10675.1|996434_997286_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
997476:997517	attL	CAATAGACTTCTTTCGAAACTGGTTAAAGAGTTCAAAATTAT	NA	NA	NA	NA
SPR10677.1|997937_998165_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10682.1|998127_998217_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10687.1|998213_998315_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10691.1|998454_998892_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10696.1|998903_999101_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10699.1|999051_999255_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10704.1|999419_999752_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10709.1|1000623_1000866_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10714.1|1000946_1001060_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10718.1|1001491_1001986_-	membrane protein	NA	NA	NA	NA	NA
SPR10722.1|1002032_1002677_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	1.2e-07
SPR10727.1|1002711_1003107_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR10731.1|1003493_1004942_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	2.0e-71
SPR10735.1|1004950_1005691_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10739.1|1006090_1006510_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10743.1|1007215_1008325_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
SPR10748.1|1008526_1009870_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10753.1|1010170_1010797_-	lipoate-protein ligase B	NA	NA	NA	NA	NA
SPR10756.1|1010879_1012298_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR10761.1|1012304_1013432_+	cell division protein FtsW	NA	NA	NA	NA	NA
SPR10767.1|1013435_1014515_+	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR10772.1|1015252_1015456_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10777.1|1015690_1015954_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10782.1|1016073_1016475_+	histidine kinase	NA	NA	NA	NA	NA
1016030:1016071	attR	CAATAGACTTCTTTCGAAACTGGTTAAAGAGTTCAAAATTAT	NA	NA	NA	NA
SPR10786.1|1016595_1016865_+	histidine kinase	NA	NA	NA	NA	NA
SPR10790.1|1016879_1017017_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10795.1|1017203_1017548_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10800.1|1017570_1017741_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10804.1|1018287_1020087_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10809.1|1020222_1020618_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10813.1|1020629_1021067_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10818.1|1021220_1022096_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10822.1|1022370_1023573_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR10827.1|1023515_1023914_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR10832.1|1024566_1024890_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10837.1|1024927_1025608_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10841.1|1025854_1026226_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
SPR10844.1|1026249_1026771_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
SPR10849.1|1026774_1028895_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.7	2.5e-59
SPR10854.1|1029101_1030625_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
SPR10859.1|1031151_1031430_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10863.1|1031702_1031897_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10868.1|1031993_1032317_-	replicative DNA helicase	NA	O80281	Escherichia_phage	48.5	2.0e-16
SPR10871.1|1032586_1033666_-	heme A synthase	NA	NA	NA	NA	NA
SPR10876.1|1034052_1034289_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10881.1|1034365_1034629_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10885.1|1034751_1034928_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 17
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1042300	1080978	2254553	transposase	Wolbachia_phage(42.86%)	49	NA	NA
SPR10913.1|1042300_1042564_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10918.1|1042847_1043222_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10923.1|1043208_1043715_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.5	4.2e-13
SPR10927.1|1044011_1044155_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10931.1|1044732_1045788_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10936.1|1045796_1046090_+	DNA helicase	NA	NA	NA	NA	NA
SPR10940.1|1046185_1046863_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	43.0	6.2e-44
SPR10945.1|1047222_1047723_+	ankyrin	NA	Q9JML4	Wolbachia_phage	46.7	2.2e-06
SPR10950.1|1047824_1048328_+	membrane protein	NA	NA	NA	NA	NA
SPR10954.1|1048331_1048472_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR10959.1|1048819_1049083_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10964.1|1049202_1049604_+	histidine kinase	NA	NA	NA	NA	NA
SPR10971.1|1049724_1049994_+	histidine kinase	NA	NA	NA	NA	NA
SPR10976.1|1050008_1050146_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10981.1|1050332_1050620_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10985.1|1050698_1050815_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10988.1|1050889_1051687_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10992.1|1051709_1052642_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10997.1|1052660_1053410_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11002.1|1053531_1054458_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	59.4	3.4e-85
SPR11007.1|1054538_1054802_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR11012.1|1055048_1055945_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR11017.1|1056040_1056184_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11020.1|1056267_1056723_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11024.1|1056931_1057171_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR11028.1|1057276_1057423_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR11033.1|1057423_1058305_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
SPR11036.1|1058326_1058647_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11041.1|1059319_1059781_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11046.1|1059749_1060637_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11051.1|1060621_1061752_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11055.1|1061723_1062302_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11059.1|1062820_1065490_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11064.1|1065474_1065936_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11069.1|1065966_1066467_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11073.1|1066476_1066686_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11076.1|1066660_1066957_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11081.1|1066987_1067449_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11086.1|1067433_1068060_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11091.1|1068056_1068758_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11095.1|1068729_1071030_-	conjugal transfer protein TraA	NA	Q7T5H7	Cryptophlebia_leucotreta_granulosis_virus	24.7	4.6e-06
SPR11100.1|1071309_1071666_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11105.1|1072183_1072642_+	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR11110.1|1072660_1073110_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
SPR11112.1|1073226_1073577_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11117.1|1073626_1073929_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11123.1|1073995_1078762_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11128.1|1078788_1079412_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11133.1|1079979_1080978_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.8e-84
>prophage 18
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1091922	1210910	2254553	integrase,transposase,tRNA	Streptococcus_phage(21.43%)	117	1141266:1141282	1209579:1209620
SPR11195.1|1091922_1092105_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11199.1|1092208_1092532_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11204.1|1092531_1092924_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11207.1|1092932_1093091_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11210.1|1093080_1093569_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11215.1|1093675_1093954_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11220.1|1094055_1094283_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11223.1|1094424_1095753_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11228.1|1095752_1096082_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11233.1|1096062_1098552_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11237.1|1098548_1099208_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR11242.1|1099294_1099498_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11247.1|1099498_1100476_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11252.1|1100498_1100882_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR11256.1|1100878_1102567_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR11262.1|1102818_1104324_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR11266.1|1104434_1104995_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.8	2.0e-24
SPR11269.1|1105006_1105723_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11274.1|1105719_1107021_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR11279.1|1107020_1109663_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR11284.1|1109678_1110824_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR11289.1|1110829_1112584_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11292.1|1112593_1113625_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11297.1|1113676_1114228_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11302.1|1114236_1116345_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11306.1|1116611_1117367_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11311.1|1117423_1119433_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11315.1|1119710_1120028_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11319.1|1120613_1121600_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.0e-84
SPR11323.1|1121720_1122239_-	hydrolase	NA	NA	NA	NA	NA
SPR11327.1|1122487_1123423_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR11331.1|1123453_1123669_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR11336.1|1123806_1124616_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR11341.1|1124619_1125123_-	membrane protein	NA	NA	NA	NA	NA
SPR11346.1|1125170_1125677_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	32.2	1.4e-11
SPR11350.1|1126027_1127476_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.5	2.6e-71
SPR11354.1|1127484_1129194_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11358.1|1130176_1130935_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11363.1|1131376_1131592_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11368.1|1131907_1132027_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11373.1|1132247_1132493_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11377.1|1133489_1134428_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
SPR11382.1|1134469_1136467_+	murein transglycosylase	NA	I1VXB7	Halocynthia_phage	39.4	4.4e-05
SPR11388.1|1136863_1137631_-	aplha/beta hydrolase	NA	NA	NA	NA	NA
SPR11392.1|1137666_1138806_+	capsule biosynthesis protein CapM	NA	NA	NA	NA	NA
SPR11399.1|1139148_1140585_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR11402.1|1140581_1140986_+	ATP synthase subunit epsilon	NA	NA	NA	NA	NA
1141266:1141282	attL	TATTATTTGTCAATATT	NA	NA	NA	NA
SPR11405.1|1142626_1143064_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1141266:1141282	attL	TATTATTTGTCAATATT	NA	NA	NA	NA
SPR11410.1|1143075_1143450_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11415.1|1143665_1144040_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11420.1|1144051_1144489_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11425.1|1144615_1144726_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11430.1|1144722_1145274_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11433.1|1145273_1145555_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11438.1|1146038_1146239_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11442.1|1146848_1147025_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11446.1|1147128_1147236_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11450.1|1147201_1147318_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11455.1|1147321_1147444_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11459.1|1148173_1149097_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.0	4.4e-08
1147719:1147735	attR	AATATTGACAAATAATA	NA	NA	NA	NA
SPR11464.1|1149093_1149705_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	2.5e-20
1147719:1147735	attR	AATATTGACAAATAATA	NA	NA	NA	NA
SPR11468.1|1149973_1150597_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
SPR11473.1|1150723_1151515_+	Ribosomal RNA small subunit methyltransferase E	NA	NA	NA	NA	NA
SPR11478.1|1151556_1152414_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR11482.1|1152440_1153196_+	organic solvent ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	1.3e-21
SPR11486.1|1153338_1153527_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11489.1|1154076_1155531_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	34.6	6.8e-64
SPR11494.1|1155987_1156425_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11498.1|1156436_1156811_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11504.1|1157436_1157541_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11509.1|1157640_1157871_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11512.1|1158555_1159224_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR11517.1|1160533_1160737_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11521.1|1160804_1161293_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11525.1|1161777_1162287_+	CarD family transcriptional regulator	NA	NA	NA	NA	NA
SPR11528.1|1162310_1163345_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.6	1.1e-68
SPR11533.1|1163361_1164153_+	NAD kinase	NA	NA	NA	NA	NA
SPR11537.1|1164251_1165280_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11542.1|1165266_1165725_-	protein TolR	NA	NA	NA	NA	NA
SPR11546.1|1165730_1166420_-	protein TolQ	NA	NA	NA	NA	NA
SPR11549.1|1166591_1167611_+	porphobilinogen synthase	NA	NA	NA	NA	NA
SPR11554.1|1167825_1168131_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11559.1|1168318_1170775_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11564.1|1171094_1171958_-	peptide chain release factor 1	NA	NA	NA	NA	NA
SPR11566.1|1172349_1174155_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	32.6	5.7e-20
SPR11571.1|1174335_1174665_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11575.1|1175086_1175365_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11580.1|1175657_1175990_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11584.1|1176146_1176332_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11589.1|1176323_1178078_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR11593.1|1178338_1178431_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11598.1|1179323_1180415_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
SPR11601.1|1180956_1181340_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11606.1|1181391_1181793_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11611.1|1181773_1181929_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11614.1|1181956_1182133_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11619.1|1182447_1182603_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11624.1|1183259_1183526_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11629.1|1183504_1183621_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11634.1|1183938_1184154_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11639.1|1184466_1184772_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11643.1|1185246_1185813_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR11648.1|1185817_1185949_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR11653.1|1186569_1186857_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11658.1|1186867_1189285_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
SPR11661.1|1189284_1191720_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11666.1|1191741_1195626_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11671.1|1195679_1198952_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11674.1|1198944_1201509_+	type VI secretion protein	NA	NA	NA	NA	NA
SPR11679.1|1201545_1202799_+	MFS transporter	NA	NA	NA	NA	NA
SPR11683.1|1202826_1204869_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.4	1.6e-98
SPR11688.1|1205048_1206395_+|tRNA	glutamate--tRNA ligase 2	tRNA	NA	NA	NA	NA
SPR11692.1|1206459_1207890_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	31.8	7.1e-50
SPR11698.1|1208926_1209352_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11700.1|1209615_1209801_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11705.1|1210198_1210384_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11710.1|1210655_1210910_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 19
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1219874	1304906	2254553	integrase,protease,transposase,tRNA	Streptococcus_phage(30.0%)	103	1224748:1224773	1311114:1311413
SPR11744.1|1219874_1220246_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11747.1|1220432_1220534_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11751.1|1220541_1221006_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11755.1|1221118_1221820_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
SPR11759.1|1221839_1222625_-	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
SPR11764.1|1222621_1223191_-	elongation factor P	NA	NA	NA	NA	NA
SPR11767.1|1223396_1224650_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.1	9.8e-120
1224748:1224773	attL	ATTATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
SPR11771.1|1224874_1226176_-|tRNA	proline--tRNA ligase	tRNA	A0A1V0SKZ9	Klosneuvirus	20.4	9.8e-06
1224748:1224773	attL	ATTATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
SPR11776.1|1226189_1226483_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11780.1|1226496_1227717_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
SPR11784.1|1227797_1228814_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SPR11788.1|1229088_1231545_+	virB4 protein precursor	NA	NA	NA	NA	NA
SPR11793.1|1231544_1236062_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11797.1|1236605_1236818_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11800.1|1236876_1237131_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11805.1|1237492_1238101_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11810.1|1238217_1238727_+|integrase	integrase	integrase	G8C7S0	Escherichia_phage	34.4	8.0e-12
SPR11814.1|1238906_1239152_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11819.1|1239148_1239517_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR11823.1|1239497_1239650_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11827.1|1239646_1240135_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11832.1|1240480_1240708_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11836.1|1240849_1242178_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11838.1|1242177_1242507_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11843.1|1242606_1243098_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11848.1|1243075_1243363_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11852.1|1243334_1244183_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR11856.1|1244191_1245433_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR11862.1|1245651_1246446_+	conjugal transfer protein	NA	NA	NA	NA	NA
1245560:1245585	attR	ATTATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
SPR11866.1|1246468_1246579_+	Uncharacterised protein	NA	NA	NA	NA	NA
1245560:1245585	attR	ATTATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
SPR11870.1|1246575_1246857_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR11875.1|1246853_1248542_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR11880.1|1248792_1249686_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR11885.1|1249896_1250322_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11890.1|1250333_1251050_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11892.1|1251046_1251676_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR11896.1|1251870_1252350_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR11902.1|1252349_1253852_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR11906.1|1253938_1254877_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.2	4.5e-85
SPR11910.1|1255126_1255564_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR11915.1|1255798_1257247_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	1.5e-71
SPR11919.1|1257520_1258033_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11923.1|1258338_1258629_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11928.1|1258647_1259040_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11932.1|1259417_1260920_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11936.1|1260928_1262377_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.1	1.4e-69
SPR11941.1|1262438_1263209_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	32.8	3.7e-21
SPR11946.1|1263740_1263944_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11951.1|1264014_1264116_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11956.1|1264102_1264222_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11960.1|1264644_1268082_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR11963.1|1268905_1269232_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11968.1|1269301_1269472_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11972.1|1269786_1270101_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11977.1|1270449_1271178_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR11981.1|1271174_1271402_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11986.1|1271411_1272890_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11990.1|1272967_1273252_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR11995.1|1273321_1274959_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12000.1|1274958_1275438_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12005.1|1275632_1276034_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12009.1|1276051_1276267_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12013.1|1276263_1276980_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12020.1|1277108_1277876_-	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR12026.1|1277939_1279688_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12031.1|1279710_1280394_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12036.1|1280671_1282039_+	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR12041.1|1281943_1282459_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12047.1|1282468_1282897_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12051.1|1282868_1283741_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12055.1|1283721_1284051_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12059.1|1284050_1285382_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12063.1|1285523_1285751_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12066.1|1286096_1286585_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12071.1|1286581_1286734_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12076.1|1286714_1287083_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR12080.1|1287079_1287367_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12083.1|1287431_1287641_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12087.1|1287673_1287955_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12092.1|1287935_1288100_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12098.1|1288491_1288809_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12102.1|1289629_1290010_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12106.1|1290210_1290888_-	septal ring lytic transglycosylase RlpA family lipoprotein	NA	F5B3X9	Synechococcus_phage	39.2	1.6e-12
SPR12111.1|1291057_1291186_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12116.1|1291564_1291882_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12120.1|1292273_1292438_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12124.1|1292418_1292943_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12127.1|1293007_1293331_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12132.1|1293330_1293750_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12137.1|1294710_1295556_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12140.1|1295680_1295998_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12144.1|1296117_1296558_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12148.1|1296663_1297443_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	25.3	1.0e-13
SPR12153.1|1297792_1298125_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12158.1|1298442_1298961_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12161.1|1299447_1299951_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
SPR12165.1|1299963_1300878_+	magnesium transporter	NA	NA	NA	NA	NA
SPR12169.1|1300927_1301491_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
SPR12174.1|1301957_1303427_+	PleD family two-component system response regulator	NA	G3MA91	Bacillus_virus	35.0	1.0e-19
SPR12179.1|1303533_1303662_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12184.1|1303671_1303908_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12186.1|1303919_1304357_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12190.1|1304549_1304906_-|transposase	transposase	transposase	NA	NA	NA	NA
1311114:1311413	attR	TAAAGATAAAATCTAATTTAAAAATAGATCAGCAAAAAAAGTGTTTAACTGGATATTTAACTGATCCAAATTACAACTTAACCAGAAAGGAACAAAAATATATTTTAAAATTAACAAATGAAAATGATTTTATTTGGAATAAGAAAGGTCAAAACTTTCTTGATTTTTGTATGTATAAAATTATACGAATGCATTCCATAGCACTTGAAATACCAATCAAAAAATGTTCTAGCAATATGCTAATAAATAAAGTGATCAAACCCTTTCAGGAATTTATTACACCAGAACATTTTAAGAATA	NA	NA	NA	NA
>prophage 20
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1314416	1423098	2254553	integrase,transposase	Wolbachia_phage(23.08%)	118	1336445:1336469	1427676:1427717
SPR12243.1|1314416_1315403_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	4.7e-85
SPR12248.1|1315595_1316798_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12252.1|1316894_1317038_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12257.1|1317121_1317577_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12262.1|1317853_1321339_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12265.1|1321335_1321842_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12270.1|1321750_1321945_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12275.1|1322394_1322790_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12280.1|1322947_1323250_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12285.1|1323504_1323666_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR12289.1|1323852_1324191_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12294.1|1324255_1325557_-	MFS transporter	NA	NA	NA	NA	NA
SPR12298.1|1325762_1325909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12302.1|1327153_1327750_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
SPR12309.1|1327880_1328636_+	ribonuclease PH	NA	NA	NA	NA	NA
SPR12314.1|1329070_1329865_-	cytochrome c	NA	NA	NA	NA	NA
SPR12323.1|1330595_1330778_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
SPR12327.1|1330778_1331318_+	ribonuclease P	NA	NA	NA	NA	NA
SPR12331.1|1331556_1334049_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12336.1|1335385_1335721_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	43.9	5.2e-12
1336445:1336469	attL	CAGTTATTAATTCCTGTAGTCTTTC	NA	NA	NA	NA
SPR12341.1|1336559_1336694_-	Uncharacterised protein	NA	NA	NA	NA	NA
1336445:1336469	attL	CAGTTATTAATTCCTGTAGTCTTTC	NA	NA	NA	NA
SPR12345.1|1337610_1337823_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12350.1|1337812_1338136_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12356.1|1338501_1338939_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12360.1|1338901_1339738_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	28.6	3.2e-18
SPR12365.1|1339875_1340163_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12368.1|1340159_1340528_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR12373.1|1340508_1340661_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12378.1|1340657_1341146_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12383.1|1341491_1341719_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12388.1|1341860_1343198_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12393.1|1343197_1343527_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12396.1|1343626_1344118_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12400.1|1344095_1346000_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12405.1|1345996_1346656_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR12410.1|1346739_1346943_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12415.1|1346943_1347921_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12420.1|1347943_1348054_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12423.1|1348050_1348332_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR12427.1|1348328_1350020_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12432.1|1350083_1351385_+	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR12438.1|1351579_1352158_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12441.1|1352539_1352674_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12445.1|1352670_1353300_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12450.1|1353494_1353974_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12453.1|1353973_1356625_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12457.1|1356640_1357807_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12461.1|1357812_1358352_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12465.1|1358306_1358549_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR12470.1|1358559_1359546_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12476.1|1359555_1360539_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12481.1|1360590_1363263_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12485.1|1363534_1365943_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12490.1|1365911_1366373_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12495.1|1367045_1367366_+	Uncharacterised protein	NA	NA	NA	NA	NA
1366918:1366942	attR	GAAAGACTACAGGAATTAATAACTG	NA	NA	NA	NA
SPR12498.1|1367387_1368269_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	40.1	2.0e-50
1366918:1366942	attR	GAAAGACTACAGGAATTAATAACTG	NA	NA	NA	NA
SPR12501.1|1368269_1368416_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR12505.1|1368521_1368761_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR12509.1|1368969_1369425_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12513.1|1369492_1370407_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	62.5	4.4e-85
SPR12517.1|1370780_1371083_-	hydrolase	NA	NA	NA	NA	NA
SPR12521.1|1371491_1371617_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12524.1|1371617_1371965_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR12528.1|1372461_1373802_+|integrase	integrase	integrase	G8C7S0	Escherichia_phage	23.2	3.0e-10
SPR12532.1|1373866_1374190_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12536.1|1374189_1374609_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12540.1|1374589_1374742_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12543.1|1374738_1375125_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12547.1|1375386_1375584_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12550.1|1375717_1376053_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12554.1|1376091_1377408_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12557.1|1377407_1377737_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12561.1|1377717_1380210_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12565.1|1380206_1380866_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR12569.1|1380949_1381123_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12573.1|1381156_1382101_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12576.1|1382123_1382507_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR12579.1|1382503_1384192_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12581.1|1384446_1385670_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12584.1|1385779_1386340_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	40.4	4.5e-24
SPR12588.1|1386351_1387068_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12592.1|1387064_1387694_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12596.1|1387888_1388368_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12600.1|1388367_1391016_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12604.1|1391031_1392177_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12609.1|1392180_1393935_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12613.1|1393944_1394973_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12615.1|1394957_1397636_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12619.1|1397909_1400756_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12622.1|1401034_1401490_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12625.1|1401604_1402636_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12629.1|1402814_1403441_-	guanosine polyphosphate pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	27.4	5.0e-08
SPR12633.1|1403552_1404515_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR12636.1|1404530_1405229_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12639.1|1405251_1405920_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12642.1|1405934_1406726_-	histidine kinase	NA	NA	NA	NA	NA
SPR12646.1|1406845_1407109_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12650.1|1407475_1408279_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	28.8	6.2e-19
SPR12655.1|1408377_1409634_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12658.1|1409707_1410130_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12661.1|1410183_1410465_-	ankyrin	NA	NA	NA	NA	NA
SPR12665.1|1410499_1410895_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR12669.1|1411281_1412049_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	43.9	2.0e-46
SPR12671.1|1411988_1412423_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12675.1|1412630_1412879_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12679.1|1413485_1414754_+	ankyrin repeat-containing protein 09	NA	A0A2H4X210	Flamingopox_virus	28.2	7.3e-06
SPR12682.1|1415157_1415748_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	48.2	3.9e-26
SPR12686.1|1415972_1416287_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12690.1|1416314_1416527_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12693.1|1416544_1416829_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12697.1|1416836_1416944_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12701.1|1416918_1417227_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12703.1|1417533_1417662_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12707.1|1417810_1418317_-	Group II intron-encoded protein LtrA	NA	A0A0U4J920	Pseudomonas_phage	50.3	4.8e-33
SPR12709.1|1418508_1419351_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR12713.1|1419676_1419817_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR12717.1|1420468_1422817_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR12721.1|1422969_1423098_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1427676:1427717	attR	AATAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 21
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1428333	1640472	2254553	integrase,transposase,tRNA	Wolbachia_phage(12.5%)	237	1417643:1417679	1620436:1620472
1417643:1417679	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGT	NA	NA	NA	NA
SPR12740.1|1428333_1428708_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1417643:1417679	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGT	NA	NA	NA	NA
SPR12744.1|1428719_1429157_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1417643:1417679	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGT	NA	NA	NA	NA
SPR12748.1|1429459_1430026_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12752.1|1430446_1430722_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12755.1|1430781_1431615_+|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.2	2.1e-17
SPR12759.1|1431635_1432106_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR12763.1|1432229_1432475_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12767.1|1432471_1432840_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12768.1|1432820_1432973_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12772.1|1432969_1433458_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12776.1|1433803_1434031_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12779.1|1434172_1435510_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12783.1|1435509_1435839_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12786.1|1435819_1436428_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12789.1|1436405_1438310_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12792.1|1438306_1438966_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR12795.1|1439049_1439253_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12797.1|1439253_1440231_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12801.1|1440306_1440639_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR12805.1|1440635_1442324_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12808.1|1442577_1443882_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12812.1|1443991_1444552_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	40.4	1.7e-23
SPR12816.1|1444563_1445280_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12819.1|1445276_1446170_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12823.1|1446123_1446579_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12827.1|1446578_1447685_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12831.1|1447766_1449131_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12836.1|1449248_1450397_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12840.1|1450402_1452157_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12844.1|1452166_1453114_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12847.1|1453165_1454608_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12850.1|1454866_1455829_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12855.1|1456091_1456847_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12857.1|1456903_1458910_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12861.1|1459187_1459412_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12865.1|1459630_1461568_-	membrane protein	NA	NA	NA	NA	NA
SPR12869.1|1461615_1461723_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12872.1|1462255_1462708_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12876.1|1463161_1464160_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR12880.1|1464278_1464857_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	1.3e-05
SPR12884.1|1464957_1465815_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12886.1|1465836_1466328_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12890.1|1466400_1466565_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR12894.1|1466919_1467510_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12898.1|1468005_1468365_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	38.7	1.2e-11
SPR12902.1|1468486_1469362_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12905.1|1470359_1470605_-	Uncharacterised protein	NA	B0VK10	Azospirillum_phage	46.7	5.0e-12
SPR12909.1|1471310_1471928_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	41.9	1.4e-23
1470836:1470872	attR	ACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR12913.1|1471997_1473035_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
1470836:1470872	attR	ACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR12917.1|1473018_1473765_+	amidophosphoribosyltransferase	NA	NA	NA	NA	NA
1470836:1470872	attR	ACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR12920.1|1473895_1474546_+	Chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
SPR12924.1|1474609_1476982_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.3	2.5e-172
SPR12927.1|1477098_1478112_+	threonine dehydratase	NA	NA	NA	NA	NA
SPR12931.1|1478285_1479161_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12935.1|1479628_1479976_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR12938.1|1479963_1480485_-|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR12942.1|1480693_1480945_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12945.1|1480913_1481189_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12948.1|1481511_1482537_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12951.1|1482702_1482966_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12954.1|1483149_1483731_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12957.1|1483767_1485225_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR12959.1|1485232_1485397_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12962.1|1485400_1486150_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
SPR12965.1|1486155_1486449_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
SPR12968.1|1487199_1488780_-|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR12971.1|1488904_1489468_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
SPR12974.1|1489430_1489976_+	ubiquinone biosynthesis protein UbiB	NA	NA	NA	NA	NA
SPR12977.1|1490052_1490745_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR12980.1|1490796_1491570_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR12983.1|1491615_1492101_+	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR12985.1|1492097_1492346_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12988.1|1492381_1495210_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12990.1|1495118_1495316_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12993.1|1495401_1497072_-	NADH dehydrogenase	NA	NA	NA	NA	NA
SPR12995.1|1497152_1498031_-	succinyl-CoA synthetase subunit alpha	NA	A0A2K9L5E9	Tupanvirus	31.5	2.5e-21
SPR12998.1|1498045_1499206_-	succinyl-CoA ligase subunit beta	NA	NA	NA	NA	NA
SPR13001.1|1499262_1500525_-	2-polyprenyl-6-methoxyphenol 4-hydroxylase	NA	NA	NA	NA	NA
SPR13003.1|1500880_1501465_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13006.1|1501605_1504809_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	34.5	5.0e-176
SPR13009.1|1504845_1505451_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13011.1|1505597_1505804_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
SPR13014.1|1505832_1506342_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
SPR13017.1|1506436_1507690_+	MFS transporter	NA	NA	NA	NA	NA
SPR13018.1|1507778_1507868_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13021.1|1508034_1508763_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13024.1|1508871_1510128_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13027.1|1510216_1511401_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13030.1|1511446_1513657_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SPR13032.1|1513989_1514259_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SPR13035.1|1514282_1515191_-|tRNA	tRNA pseudouridine(55) synthase	tRNA	NA	NA	NA	NA
SPR13037.1|1515578_1516028_-	transcriptional regulator	NA	A0A223W054	Agrobacterium_phage	43.7	3.9e-10
SPR13040.1|1516529_1517675_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR13043.1|1517985_1518393_+	cytochrome c biogenesis protein CcmE	NA	NA	NA	NA	NA
SPR13045.1|1518411_1519326_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13048.1|1519322_1519796_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
SPR13050.1|1519809_1521573_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.7	4.7e-59
SPR13053.1|1521679_1521778_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13056.1|1522560_1524777_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13059.1|1525936_1526413_+	RDD family protein	NA	NA	NA	NA	NA
SPR13061.1|1526624_1527320_+	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
SPR13064.1|1527886_1528012_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13067.1|1528012_1528501_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR13070.1|1529437_1529794_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13073.1|1529873_1529966_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13076.1|1530009_1530138_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13077.1|1530354_1530987_-	3'-5' exonuclease	NA	NA	NA	NA	NA
SPR13080.1|1530993_1531293_-	Cell division protein FtsB	NA	NA	NA	NA	NA
SPR13083.1|1531300_1531951_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SPR13086.1|1531953_1532649_-	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	41.3	1.6e-18
SPR13089.1|1532824_1534630_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.2	9.0e-42
SPR13091.1|1534948_1538653_-	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	30.8	9.9e-128
SPR13094.1|1538642_1541207_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9L2Y7	Tupanvirus	50.3	9.0e-245
SPR13097.1|1541238_1542114_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SPR13100.1|1542371_1543142_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13103.1|1543495_1544494_+	peptidase S66	NA	NA	NA	NA	NA
SPR13106.1|1544557_1544773_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13108.1|1545302_1545419_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13112.1|1545433_1545634_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13115.1|1545902_1550828_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR13118.1|1550907_1552251_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
SPR13121.1|1552276_1553215_+	recombinase XerC	NA	A0A0K0N6I5	Gordonia_phage	34.2	7.3e-11
SPR13124.1|1553248_1553680_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
SPR13127.1|1553765_1554293_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	49.7	1.6e-39
SPR13129.1|1554316_1555189_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SPR13132.1|1555172_1556111_+	ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SPR13135.1|1556762_1557185_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13138.1|1557181_1558498_+	Dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.8	4.3e-17
SPR13141.1|1558623_1559031_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13144.1|1559454_1559733_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13147.1|1559931_1560150_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13149.1|1560307_1560535_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	42.0	1.3e-06
SPR13151.1|1560736_1560883_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13152.1|1561171_1561474_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13154.1|1561795_1562191_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13156.1|1562533_1562788_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR13158.1|1562876_1564271_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13160.1|1565062_1565401_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	5.7e-06
SPR13162.1|1566115_1566421_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13164.1|1567187_1568048_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13166.1|1568126_1568594_-	single-stranded DNA-binding protein	NA	A0A1B1IVU7	uncultured_Mediterranean_phage	50.6	3.8e-37
SPR13169.1|1568749_1568986_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13170.1|1568966_1569362_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13172.1|1569403_1569682_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13174.1|1569858_1570077_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13176.1|1570130_1570334_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13178.1|1570284_1570482_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13181.1|1570471_1570930_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13183.1|1570975_1571077_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13186.1|1571073_1571226_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13188.1|1571364_1571616_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13191.1|1571615_1571804_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13194.1|1572927_1573131_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13197.1|1573081_1573279_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13199.1|1573268_1573727_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13201.1|1574126_1574771_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13204.1|1574870_1575722_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR13207.1|1576295_1576943_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13209.1|1577169_1578072_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	57.3	8.7e-86
SPR13212.1|1579049_1579388_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	1.1e-06
SPR13214.1|1580065_1580260_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR13217.1|1580960_1581119_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
SPR13219.1|1581844_1582132_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13222.1|1582428_1583142_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13225.1|1583438_1584707_-	NADH-quinone oxidoreductase subunit F	NA	NA	NA	NA	NA
SPR13227.1|1584724_1585279_-	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA	NA
SPR13230.1|1585275_1586466_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
SPR13232.1|1586477_1587068_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
SPR13234.1|1587078_1587594_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
SPR13237.1|1587606_1587978_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
SPR13240.1|1588190_1588409_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13242.1|1589291_1589477_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13244.1|1589498_1589804_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13246.1|1589821_1590493_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13248.1|1590783_1591194_-	Uncharacterised protein	NA	A0A0U4J920	Pseudomonas_phage	55.3	2.2e-28
SPR13250.1|1591385_1592228_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR13253.1|1592553_1592694_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR13256.1|1593436_1593832_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13258.1|1593873_1594269_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13261.1|1594409_1594715_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13264.1|1594867_1595020_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13267.1|1595028_1595460_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13270.1|1595456_1595744_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13273.1|1595808_1596018_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13274.1|1596050_1596332_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13276.1|1596312_1596477_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13278.1|1596868_1597063_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13280.1|1597318_1597474_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13281.1|1598627_1602062_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR13283.1|1602469_1602760_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13285.1|1603535_1604735_+	MFS transporter	NA	S4TR35	Salmonella_phage	20.2	9.7e-08
SPR13286.1|1605123_1607265_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13288.1|1607509_1608127_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR13290.1|1608126_1609104_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.3	6.2e-05
SPR13291.1|1609285_1610110_+	cytochrome c oxidase subunit III	NA	NA	NA	NA	NA
SPR13293.1|1610222_1610624_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13295.1|1610690_1610879_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13297.1|1610884_1611160_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13298.1|1611587_1612814_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	29.4	8.9e-17
SPR13300.1|1612949_1613273_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13302.1|1613272_1613692_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13303.1|1613672_1613825_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13305.1|1613821_1614148_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13307.1|1614139_1614409_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13308.1|1614557_1614995_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13310.1|1615172_1615766_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13311.1|1615735_1615927_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13314.1|1615898_1616747_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13315.1|1616755_1617760_-	ankyrin repeat-containing protein	NA	Q70HB9	Fowlpox_virus	29.4	5.8e-14
SPR13317.1|1618032_1618665_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13319.1|1618895_1620125_+	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR13321.1|1620475_1621192_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13322.1|1621188_1621818_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13324.1|1622012_1622492_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13326.1|1622491_1623007_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13328.1|1623003_1624626_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13329.1|1624631_1625117_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13331.1|1625158_1625365_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR13333.1|1625375_1626362_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13335.1|1626371_1627313_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13336.1|1627327_1627588_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13338.1|1627671_1627815_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13339.1|1627911_1628772_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13341.1|1628808_1629219_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13343.1|1629411_1630350_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.0e-84
SPR13345.1|1630470_1630890_-	hydrolase	NA	NA	NA	NA	NA
SPR13347.1|1631109_1631604_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13348.1|1631702_1632305_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13350.1|1632514_1632655_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR13354.1|1632739_1633162_-	membrane protein	NA	NA	NA	NA	NA
SPR13356.1|1633263_1633764_-	ankyrin	NA	Q9JML4	Wolbachia_phage	46.7	2.2e-06
SPR13357.1|1634123_1635572_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.3	3.1e-69
SPR13359.1|1635580_1636771_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13361.1|1636721_1637258_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13363.1|1637417_1638569_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR13365.1|1638945_1639497_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13366.1|1639548_1640472_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 22
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1658111	1689063	2254553	protease,transposase	Canarypox_virus(50.0%)	41	NA	NA
SPR13392.1|1658111_1658978_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
SPR13394.1|1659001_1660057_-	HflK protein	NA	NA	NA	NA	NA
SPR13396.1|1660238_1661270_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13398.1|1661292_1661457_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SPR13400.1|1661534_1661888_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13401.1|1661829_1661985_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13403.1|1662260_1662665_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13406.1|1662757_1663951_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13407.1|1664057_1665131_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13409.1|1665177_1666155_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13411.1|1666403_1667279_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13413.1|1667644_1668079_-	Shikimate kinase 1	NA	NA	NA	NA	NA
SPR13414.1|1668499_1669306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13416.1|1669302_1670088_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13418.1|1670087_1670444_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13420.1|1670595_1671120_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13422.1|1671116_1671683_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13423.1|1671675_1671855_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13424.1|1671933_1672176_+	2-phytyl-1,4-naphtoquinone methyltransferase	NA	NA	NA	NA	NA
SPR13425.1|1672370_1672487_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13427.1|1672908_1673532_+	streptomycin-6-phosphotransferase	NA	NA	NA	NA	NA
SPR13429.1|1674621_1675791_+	ankyrin repeat-containing protein 09	NA	Q6VZB8	Canarypox_virus	28.5	3.6e-07
SPR13431.1|1675906_1676281_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13433.1|1676292_1676730_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13435.1|1677002_1677374_-	dienelactone hydrolase	NA	NA	NA	NA	NA
SPR13437.1|1677452_1677983_-	ester cyclase	NA	NA	NA	NA	NA
SPR13439.1|1678160_1678412_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13440.1|1678709_1678916_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13442.1|1678982_1679168_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13444.1|1679203_1679422_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13445.1|1679636_1679849_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR13447.1|1679963_1680854_-|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	62.5	7.0e-88
SPR13449.1|1680974_1681199_-	hydrolase	NA	NA	NA	NA	NA
SPR13451.1|1681263_1681455_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR13452.1|1681665_1681965_+	DNA helicase	NA	NA	NA	NA	NA
SPR13453.1|1682142_1682625_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13455.1|1683166_1684387_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13457.1|1684761_1685247_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR13459.1|1685829_1688172_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13461.1|1688420_1688600_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13462.1|1688925_1689063_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 23
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1694730	1748506	2254553	integrase,transposase,protease,tRNA	Wolbachia_phage(16.67%)	58	1735350:1735409	1753664:1753811
SPR13481.1|1694730_1696002_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR13482.1|1696025_1696502_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
SPR13484.1|1696809_1696944_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13486.1|1696912_1697350_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13487.1|1697361_1697736_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13489.1|1698709_1699042_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13491.1|1699057_1699792_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13493.1|1699867_1700071_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13495.1|1700122_1700764_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13497.1|1701218_1702118_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13498.1|1702066_1702219_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13500.1|1702410_1703103_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13502.1|1703269_1703848_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13504.1|1703819_1704950_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13506.1|1704934_1706266_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13507.1|1706545_1707001_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13510.1|1707068_1708031_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.0e-84
SPR13512.1|1708152_1708731_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR13513.1|1708831_1709689_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13515.1|1709710_1710439_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13517.1|1710787_1711153_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13519.1|1711802_1712054_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR13521.1|1712034_1712157_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13523.1|1712236_1712419_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13525.1|1712727_1713507_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	25.3	1.2e-14
SPR13527.1|1713506_1713701_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13529.1|1713909_1715661_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
SPR13531.1|1715650_1716136_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13532.1|1716147_1717275_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
SPR13534.1|1717445_1717868_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
SPR13536.1|1717883_1718420_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
SPR13538.1|1718454_1720338_-|protease	ATP-dependent metalloprotease	protease	C7U047	Ostreococcus_tauri_virus	46.0	7.3e-111
SPR13540.1|1720354_1721680_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
SPR13541.1|1721764_1723204_-	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
SPR13543.1|1723248_1724748_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
SPR13545.1|1724748_1726656_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
SPR13547.1|1726659_1726983_-	NADH-quinone oxidoreductase subunit K	NA	NA	NA	NA	NA
SPR13549.1|1726966_1727575_-	NADH:ubiquinone oxidoreductase subunit J	NA	NA	NA	NA	NA
SPR13550.1|1727578_1728064_-	NADH-quinone oxidoreductase subunit I	NA	NA	NA	NA	NA
SPR13552.1|1728117_1729161_-	NADH:ubiquinone oxidoreductase subunit H	NA	NA	NA	NA	NA
SPR13553.1|1729217_1731257_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
SPR13555.1|1731536_1732100_+	ribosome-recycling factor	NA	NA	NA	NA	NA
SPR13557.1|1732300_1733581_-	porin	NA	NA	NA	NA	NA
SPR13559.1|1734174_1734741_+	deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	55.7	1.1e-57
SPR13561.1|1734782_1735265_+	protein-export protein SecB	NA	NA	NA	NA	NA
1735350:1735409	attL	AATAGACTTCTTTCGAAACTGGTTAAAGAGTTCAAAATTATAAATGCCAGAGATCAAATT	NA	NA	NA	NA
SPR13563.1|1735667_1735967_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13565.1|1736805_1737000_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13567.1|1737126_1737243_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13568.1|1737364_1737634_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13570.1|1738091_1739582_+	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR13572.1|1740101_1742243_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.3	1.1e-107
SPR13574.1|1742456_1742678_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13576.1|1742966_1743806_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13578.1|1745617_1746844_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	24.6	9.5e-19
SPR13580.1|1746981_1747305_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13582.1|1747304_1747511_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13584.1|1747531_1747852_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13585.1|1748191_1748506_+|transposase	transposase	transposase	NA	NA	NA	NA
1753664:1753811	attR	AATTTGATCTCTGGCATTTATAATTTTGAACTCTTTAACCAGTTTCGAAAGAAGTCTATTCACATGAGATCTATCATTGATATCATTGATTATAGACTTAAACCAGTTTTCAACTTTACTAAAAACTTTACTAAAAACAGTTGTCTTT	NA	NA	NA	NA
>prophage 24
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1751957	1797071	2254553	integrase,transposase,tRNA	Pseudomonas_phage(20.0%)	47	1763669:1763728	1778999:1779141
SPR13599.1|1751957_1752713_+|integrase	integrase	integrase	A0A2D1GNR7	Pseudomonas_phage	28.2	1.7e-05
SPR13601.1|1753047_1753626_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13602.1|1753597_1756021_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13604.1|1756299_1756755_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13606.1|1757024_1757900_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13608.1|1758073_1758298_-	guanosine polyphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR13610.1|1759402_1759600_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13612.1|1759797_1760103_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13614.1|1760536_1760755_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13615.1|1761151_1761658_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	3.4e-15
SPR13617.1|1761679_1762219_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13619.1|1762220_1762826_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13621.1|1763432_1763594_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SPR13623.1|1763603_1763987_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
1763669:1763728	attL	TAGACTTCTTTCGAAACTGGTTAAAGAGTTCAAAATTATTGCTGACAAATATCGAAATAG	NA	NA	NA	NA
SPR13625.1|1763946_1764393_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
SPR13626.1|1764413_1765322_-	lipoyl synthase	NA	NA	NA	NA	NA
SPR13627.1|1765332_1766241_-	signal peptide peptidase SppA	NA	NA	NA	NA	NA
SPR13629.1|1766261_1766723_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	48.6	1.4e-28
SPR13631.1|1766725_1767622_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR13633.1|1767602_1768505_-	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR13634.1|1768793_1770989_-	ATPase AAA	NA	A0A0H3UZA5	Geobacillus_virus	27.6	6.6e-55
SPR13636.1|1771015_1771390_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SPR13638.1|1771386_1772151_-|tRNA	tRNA (guanine(37)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
SPR13640.1|1772198_1774049_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13641.1|1774050_1774617_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13643.1|1774667_1776041_-	transporter	NA	NA	NA	NA	NA
SPR13645.1|1776384_1777314_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.2	1.4e-30
SPR13647.1|1777559_1777910_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13649.1|1777872_1778421_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13651.1|1778482_1778731_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13653.1|1778714_1778894_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13654.1|1779443_1779728_+	chaperonin	NA	A0A221S4G8	uncultured_virus	46.2	4.0e-13
1778999:1779141	attR	TAGACTTCTTTCGAAACTGGTTAAAGAGTTCAAAATTATTGCTGACAAATATCGAAATAGACGTAAAAGATTCGCTCTTAGATTTAATTTGATCTCTGGCATTTATAATTTTGAACTCTTTAACCAGTTTCGAAAGAAGTCTA	NA	NA	NA	NA
SPR13656.1|1779800_1781465_+	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	53.3	2.7e-141
SPR13658.1|1782185_1782581_-	holo-ACP synthase	NA	NA	NA	NA	NA
SPR13660.1|1782591_1784727_-	(p)ppGpp synthetase	NA	B3FJI5	Pseudomonas_phage	31.3	1.7e-07
SPR13661.1|1784745_1785129_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR13663.1|1785426_1786167_+	membrane protein	NA	NA	NA	NA	NA
SPR13665.1|1786284_1786617_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13667.1|1786639_1787017_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13669.1|1787033_1788026_+	GTPase ObgE	NA	NA	NA	NA	NA
SPR13670.1|1788337_1788670_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.4	3.6e-05
SPR13672.1|1788712_1788898_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13674.1|1789733_1790489_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
SPR13676.1|1790500_1792273_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR13678.1|1792438_1792783_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
SPR13679.1|1792791_1794240_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
SPR13680.1|1794404_1797071_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.5	4.0e-70
>prophage 25
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1803757	1952528	2254553	integrase,protease,transposase,tRNA	Wolbachia_phage(20.0%)	169	1849738:1849753	1871421:1871436
SPR13688.1|1803757_1805704_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	8.9e-120
SPR13689.1|1805963_1807295_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
SPR13690.1|1807394_1808429_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR13691.1|1808674_1811317_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
SPR13692.1|1811341_1811476_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13693.1|1811513_1811603_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13694.1|1811926_1812511_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13695.1|1813154_1813448_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13696.1|1813619_1813853_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13697.1|1814067_1814199_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR13698.1|1815100_1815214_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13699.1|1815228_1817199_+	membrane protein	NA	NA	NA	NA	NA
SPR13700.1|1818871_1819348_-	Uncharacterised protein	NA	A0A0U4J920	Pseudomonas_phage	43.9	9.1e-18
SPR13701.1|1819459_1820080_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	9.6e-60
SPR13702.1|1820589_1820784_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13703.1|1820910_1821027_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13704.1|1821143_1821413_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13705.1|1823548_1824295_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13706.1|1824633_1825125_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
SPR13707.1|1825128_1825611_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
SPR13708.1|1825752_1826604_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
SPR13709.1|1826605_1827472_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
SPR13710.1|1827458_1828199_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
SPR13711.1|1828362_1828701_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13712.1|1828729_1829698_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
SPR13713.1|1829753_1830233_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	25.8	7.3e-07
SPR13714.1|1830414_1830768_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13715.1|1830825_1831188_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13716.1|1831250_1831607_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13717.1|1831851_1833351_-	ADP/ATP carrier protein	NA	NA	NA	NA	NA
SPR13718.1|1834421_1836287_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13719.1|1836851_1838072_-	proline/betaine transporter	NA	NA	NA	NA	NA
SPR13720.1|1838383_1839280_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
SPR13721.1|1839453_1841010_+	isocitrate dehydrogenase	NA	NA	NA	NA	NA
SPR13722.1|1842538_1845976_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR13723.1|1845914_1846583_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13724.1|1846579_1846741_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13725.1|1846749_1847238_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13726.1|1847367_1848453_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13727.1|1848914_1849433_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR13728.1|1849717_1850074_+	Protein translocase subunit SecA	NA	NA	NA	NA	NA
1849738:1849753	attL	AGAGGTTGAAAAGAAT	NA	NA	NA	NA
SPR13729.1|1850272_1850620_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13730.1|1850885_1851611_-	DNA repair protein RecO	NA	NA	NA	NA	NA
SPR13731.1|1851671_1852184_-	Uncharacterised protein	NA	A0A0K0KVI2	Prochlorococcus_phage	38.3	1.0e-19
SPR13732.1|1852227_1853427_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR13733.1|1853454_1854039_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13734.1|1854041_1854875_-	ABC transporter	NA	NA	NA	NA	NA
SPR13735.1|1854934_1855972_-	Ubiquinone biosynthesis O-methyltransferase	NA	NA	NA	NA	NA
SPR13736.1|1856078_1857281_+	aspartate aminotransferase	NA	NA	NA	NA	NA
SPR13737.1|1857570_1859157_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13738.1|1859591_1859777_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13739.1|1859931_1860306_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13740.1|1860476_1860803_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13741.1|1860812_1860971_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR13742.1|1861214_1865273_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13743.1|1865698_1866265_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13744.1|1866685_1866961_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13745.1|1867020_1867854_+|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.2	2.1e-17
SPR13746.1|1867874_1868345_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR13747.1|1868468_1868714_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13748.1|1868710_1869142_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13749.1|1869150_1869303_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13750.1|1869455_1869761_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13751.1|1869864_1870461_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13752.1|1870615_1871191_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13753.1|1871232_1872294_+	Uncharacterised protein	NA	NA	NA	NA	NA
1871421:1871436	attR	AGAGGTTGAAAAGAAT	NA	NA	NA	NA
SPR13754.1|1872302_1873454_+	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	32.7	3.4e-42
SPR13755.1|1873531_1873732_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13756.1|1873967_1874087_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR13757.1|1875007_1875226_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR13758.1|1875222_1875552_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR13759.1|1875551_1875875_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13760.1|1876085_1876220_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13761.1|1876275_1876881_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13762.1|1877749_1878010_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13763.1|1878027_1878399_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13764.1|1878618_1878750_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR13765.1|1878816_1879023_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13766.1|1879235_1882463_-	hybrid sensor histidine kinase/response regulator	NA	A0A2K9L0Z8	Tupanvirus	26.0	1.1e-18
SPR13767.1|1883556_1883676_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13768.1|1883681_1883975_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13769.1|1884121_1884334_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13770.1|1884532_1885831_-	amino acid transporter	NA	NA	NA	NA	NA
SPR13771.1|1886140_1886230_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13772.1|1886346_1886445_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13773.1|1886751_1887045_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13774.1|1887199_1887958_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13775.1|1887938_1888715_-	ankyrin repeat-containing protein	NA	A0A1V0QG01	Shearwaterpox_virus	24.5	6.2e-08
SPR13776.1|1889082_1890258_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13777.1|1890265_1890562_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13778.1|1890613_1892230_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13779.1|1892178_1892331_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13780.1|1892522_1893215_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13781.1|1893381_1893960_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13782.1|1893931_1895062_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13783.1|1895046_1896378_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13784.1|1896654_1896813_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13785.1|1896938_1897109_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR13786.1|1897177_1898140_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
SPR13787.1|1898261_1898840_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR13788.1|1898940_1899798_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13789.1|1899819_1900218_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13790.1|1900420_1900600_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13791.1|1900662_1900779_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13792.1|1900790_1900988_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13793.1|1901261_1901384_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR13794.1|1901750_1902554_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	25.8	2.2e-16
SPR13795.1|1902652_1903882_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13796.1|1903940_1904036_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13797.1|1904050_1904377_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13798.1|1904430_1904712_-	ankyrin	NA	NA	NA	NA	NA
SPR13799.1|1904746_1905322_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR13800.1|1905646_1906006_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13801.1|1906194_1907136_-	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	33.8	1.2e-13
SPR13802.1|1907247_1907637_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13803.1|1907936_1908698_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
SPR13804.1|1908687_1909389_-	type VI secretion protein	NA	NA	NA	NA	NA
SPR13805.1|1913086_1913227_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13806.1|1913672_1914050_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR13807.1|1914074_1914491_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR13808.1|1914462_1914657_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR13809.1|1914995_1915475_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13810.1|1915474_1915789_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13811.1|1916022_1916259_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13812.1|1916319_1916499_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13813.1|1916607_1917552_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13814.1|1917609_1918134_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR13815.1|1918250_1918388_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13816.1|1918928_1919210_+	membrane protein	NA	NA	NA	NA	NA
SPR13817.1|1919213_1919354_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR13818.1|1919701_1919965_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13819.1|1920084_1920486_+	histidine kinase	NA	NA	NA	NA	NA
SPR13820.1|1920606_1920876_+	histidine kinase	NA	NA	NA	NA	NA
SPR13821.1|1920890_1921028_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13822.1|1921214_1921502_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13823.1|1921580_1921697_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13824.1|1921771_1922047_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13825.1|1922095_1922575_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13826.1|1922591_1923449_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13827.1|1923544_1924039_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR13828.1|1924080_1924668_+	hydrolase	NA	NA	NA	NA	NA
SPR13829.1|1924788_1925823_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	4.9e-85
SPR13830.1|1925899_1926175_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR13831.1|1926473_1927439_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13832.1|1927508_1927964_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13833.1|1928240_1929572_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13834.1|1929556_1930687_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13835.1|1930658_1931237_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13836.1|1931854_1933318_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13837.1|1933326_1933878_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13838.1|1933929_1934877_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13839.1|1934886_1936641_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13840.1|1936644_1937790_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13841.1|1937805_1940589_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13842.1|1940733_1941825_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13843.1|1941830_1942316_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13844.1|1942357_1942564_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR13845.1|1942574_1943561_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13846.1|1943570_1944476_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13847.1|1944527_1945169_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13848.1|1945623_1946523_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13849.1|1946471_1946624_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13850.1|1946815_1947592_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13851.1|1947758_1948337_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13852.1|1948308_1949439_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13853.1|1949423_1950755_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13854.1|1951087_1951189_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13855.1|1951314_1951485_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR13856.1|1951553_1952528_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
>prophage 26
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	1966071	2006028	2254553	integrase,transposase	Bacillus_phage(33.33%)	56	1967854:1967887	1985858:1985891
SPR13870.1|1966071_1966548_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13871.1|1966770_1966989_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR13872.1|1966985_1967156_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13873.1|1967130_1967487_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13874.1|1967498_1967873_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1967854:1967887	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGA	NA	NA	NA	NA
SPR13875.1|1967864_1968020_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13876.1|1968172_1968325_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13877.1|1968333_1968765_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13878.1|1968761_1969007_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13879.1|1969130_1969601_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR13880.1|1969621_1970455_-|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.2	2.1e-17
SPR13881.1|1970514_1970790_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR13882.1|1972107_1972818_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13883.1|1973121_1973277_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13884.1|1973957_1974308_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13885.1|1974473_1975967_-	3-polyprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
SPR13886.1|1976297_1976732_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13887.1|1977077_1977446_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13888.1|1977439_1977901_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13889.1|1978841_1979111_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13890.1|1979233_1979719_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13891.1|1979894_1980161_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13892.1|1980199_1980346_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR13893.1|1980619_1980865_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13894.1|1980861_1981293_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13895.1|1981301_1981454_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13896.1|1981450_1981840_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13897.1|1981984_1982155_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13898.1|1982716_1984411_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13899.1|1984569_1985334_+	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR13900.1|1985687_1985897_+	conjugal transfer protein	NA	NA	NA	NA	NA
1985858:1985891	attR	TCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR13901.1|1985940_1986618_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13902.1|1986614_1987244_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13903.1|1987438_1987918_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13904.1|1987917_1988367_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13905.1|1988370_1989219_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13906.1|1989202_1989424_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13907.1|1989636_1989975_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13908.1|1989985_1990972_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13909.1|1990981_1991941_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR13910.1|1991992_1993261_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13911.1|1993368_1994433_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13912.1|1994679_1995408_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13913.1|1995367_1995895_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13914.1|1996313_1996442_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13915.1|1996781_1999655_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.4	7.1e-307
SPR13916.1|1999905_2000100_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13917.1|2000478_2000706_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13918.1|2000820_2001015_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13919.1|2001141_2001258_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13920.1|2001269_2001644_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13921.1|2001798_2002125_-	ribosomal subunit interface protein	NA	NA	NA	NA	NA
SPR13922.1|2002405_2003968_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	35.4	3.2e-27
SPR13923.1|2004087_2004225_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13924.1|2005175_2005418_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR13925.1|2005743_2006028_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 28
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	2126785	2158232	2254553	integrase,transposase	Streptococcus_phage(28.57%)	29	2156502:2156517	2164163:2164178
SPR14058.1|2126785_2127805_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14059.1|2128183_2129146_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR14060.1|2129161_2131780_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14061.1|2132046_2134866_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14062.1|2135144_2135600_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14063.1|2135667_2136690_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	4.9e-85
SPR14064.1|2136811_2137399_-	hydrolase	NA	NA	NA	NA	NA
SPR14065.1|2137440_2137935_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14066.1|2137953_2138889_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14067.1|2138905_2139706_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14068.1|2139835_2140537_-	histidine kinase	NA	NA	NA	NA	NA
SPR14069.1|2140601_2140880_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14070.1|2141246_2142056_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	5.3e-18
SPR14071.1|2142059_2142392_-	membrane protein	NA	NA	NA	NA	NA
SPR14072.1|2142701_2143520_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR14073.1|2143671_2144316_-	ankyrin	NA	K7Y837	Megavirus	34.4	3.0e-16
SPR14074.1|2144353_2144929_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	8.2e-05
SPR14075.1|2145161_2146598_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	2.3e-72
SPR14076.1|2146606_2148322_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14077.1|2148477_2148903_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14078.1|2148967_2149237_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14079.1|2150720_2150858_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14080.1|2151837_2153316_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	29.7	9.0e-40
SPR14081.1|2153481_2154882_-	class II fumarate hydratase	NA	NA	NA	NA	NA
SPR14082.1|2154945_2155623_-	histidine phosphotransferase	NA	NA	NA	NA	NA
SPR14083.1|2155744_2155963_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14084.1|2155996_2156224_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2156502:2156517	attL	CTTTATAGAACCTACT	NA	NA	NA	NA
SPR14085.1|2156848_2157724_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	28.1	5.2e-11
SPR14086.1|2157890_2158232_+|integrase	integrase	integrase	NA	NA	NA	NA
2164163:2164178	attR	AGTAGGTTCTATAAAG	NA	NA	NA	NA
>prophage 29
LS398549	Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I	2254553	2177887	2234482	2254553	integrase,transposase	Pneumococcus_phage(20.0%)	57	2192812:2192871	2215605:2215723
SPR14109.1|2177887_2178835_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14110.1|2178886_2180329_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14111.1|2180587_2181550_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14112.1|2181908_2182100_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14113.1|2182375_2182831_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14114.1|2182872_2183658_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR14115.1|2183819_2184026_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR14116.1|2184296_2186744_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR14117.1|2187085_2187301_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14118.1|2187400_2188936_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR14119.1|2189739_2189985_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR14120.1|2190883_2191309_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
SPR14121.1|2192075_2192234_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14122.1|2192233_2192629_+|transposase	transposase	transposase	NA	NA	NA	NA
2192812:2192871	attL	GTTCAAAATTATTGCTGACAAATATCGAAATAGACGTAAAAGATTCGCTCTTAGATTTAA	NA	NA	NA	NA
SPR14123.1|2193453_2193768_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14124.1|2194039_2194228_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14125.1|2194202_2194322_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14126.1|2195434_2197363_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14127.1|2197408_2199307_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14128.1|2199455_2200376_+	membrane protein	NA	NA	NA	NA	NA
SPR14129.1|2200410_2201766_-	DNA repair protein RadA	NA	NA	NA	NA	NA
SPR14130.1|2201765_2202338_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR14131.1|2202351_2202843_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
SPR14132.1|2203083_2203806_+	surfeit locus protein 1	NA	NA	NA	NA	NA
SPR14133.1|2203800_2204277_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14134.1|2204597_2204972_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14135.1|2204983_2205100_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14136.1|2205099_2205252_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14137.1|2206167_2207307_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR14138.1|2207683_2208235_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14139.1|2208219_2209302_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14140.1|2210512_2212192_+	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	39.1	1.4e-41
SPR14141.1|2212203_2212764_+	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SPR14142.1|2213034_2213748_+	zinc ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	6.8e-17
SPR14143.1|2213728_2214517_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
SPR14144.1|2215258_2215468_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14145.1|2215567_2215696_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14146.1|2215894_2216068_-|transposase	transposase	transposase	NA	NA	NA	NA
2215605:2215723	attR	TTAAATCTAAGAGCGAATCTTTTACGTCTATTTCGATATTTGTCAGCAATAATTTTGAACCGTTTTAGCATACCAATAACGTTTTCGTTCACAACTCTTTCTCCTGCTAACCTACAATT	NA	NA	NA	NA
SPR14147.1|2216137_2216305_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14148.1|2216844_2216964_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SPR14149.1|2217151_2217355_-	citrate synthase	NA	NA	NA	NA	NA
SPR14150.1|2217417_2218020_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14151.1|2218330_2219257_+	permease	NA	NA	NA	NA	NA
SPR14152.1|2219276_2220578_+	malate dehydrogenase	NA	NA	NA	NA	NA
SPR14153.1|2220901_2221165_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14154.1|2221301_2222138_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14155.1|2222251_2222830_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	3.9e-07
SPR14156.1|2223254_2223983_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14157.1|2224004_2224862_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14158.1|2224962_2225541_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14159.1|2225662_2226685_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.1e-84
SPR14160.1|2226752_2227208_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14161.1|2227487_2229923_+	conjugal transfer protein TraA	NA	Q7T5H7	Cryptophlebia_leucotreta_granulosis_virus	24.7	6.3e-06
SPR14162.1|2229894_2230473_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14163.1|2231030_2232095_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14164.1|2232202_2233471_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14165.1|2233522_2234482_+|transposase	transposase	transposase	NA	NA	NA	NA
