The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	0	59497	4137378	transposase,tRNA	Natrialba_phage(12.5%)	55	NA	NA
SPR37230.1|0_1920_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein	tRNA	NA	NA	NA	NA
SPR37231.1|1916_2609_+	glucose inhibited division protein B	NA	NA	NA	NA	NA
SPR37232.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
SPR37233.1|3409_4171_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SPR37234.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
SPR37235.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
SPR37236.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
SPR37237.1|8249_8531_+	preprotein translocase SecE subunit	NA	NA	NA	NA	NA
SPR37238.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
SPR37239.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SPR37240.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SPR37241.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
SPR37243.1|11160_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SPR37244.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
SPR37245.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
SPR37246.1|20126_20588_-	lipoprotein	NA	NA	NA	NA	NA
SPR37248.1|20876_21947_+	membrane protein	NA	NA	NA	NA	NA
SPR37249.1|22269_24351_-	histidine kinase	NA	NA	NA	NA	NA
SPR37250.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
SPR37252.1|25685_26201_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR37254.1|26575_27286_+	two component system response regulator	NA	NA	NA	NA	NA
SPR37256.1|27282_28233_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37258.1|28674_29103_-	hypothetical protein	NA	NA	NA	NA	NA
SPR37259.1|29141_30353_-	thiolase	NA	NA	NA	NA	NA
SPR37261.1|30364_30862_-	MaoC family protein	NA	NA	NA	NA	NA
SPR37263.1|31069_32005_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR37265.1|32178_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR37267.1|33048_34470_+	hypothetical protein	NA	NA	NA	NA	NA
SPR37272.1|34625_35576_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37279.1|35674_36625_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37292.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
SPR37294.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR37297.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR37301.1|41109_41649_+	D-glycero-beta-D-manno-heptose 17-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
SPR37303.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPR37305.1|42367_43261_+	hypothetical protein	NA	NA	NA	NA	NA
SPR37311.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SPR37314.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
SPR37320.1|44712_45663_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37324.1|46273_46798_+	exported protein	NA	NA	NA	NA	NA
SPR37327.1|46769_47006_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR37329.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
SPR37331.1|48030_48480_-	partial	NA	NA	NA	NA	NA
SPR37333.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SPR37335.1|50440_51055_+	hypothetical protein	NA	NA	NA	NA	NA
SPR37337.1|51190_52141_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37345.1|52228_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
SPR37348.1|53551_54277_+	partial	NA	NA	NA	NA	NA
SPR37350.1|54299_54614_+	outer membrane porin protein precursor	NA	NA	NA	NA	NA
SPR37352.1|54671_55406_-	aspartate/glutamate racemase	NA	NA	NA	NA	NA
SPR37356.1|55411_56002_-	glutamate/aspartate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
SPR37359.1|56026_56716_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR37361.1|56712_57474_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR37363.1|57553_58453_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR37366.1|58546_59497_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 2
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	165941	226452	4137378	transposase,tRNA,protease	Planktothrix_phage(11.11%)	54	NA	NA
SPR37772.1|165941_166892_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37774.1|167078_168329_+	partial	NA	G9BWD6	Planktothrix_phage	33.7	5.1e-20
SPR37776.1|168335_169238_-	membrane protein	NA	NA	NA	NA	NA
SPR37779.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
SPR37781.1|170127_171558_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
SPR37783.1|171591_172221_+	LysE family efflux protein	NA	NA	NA	NA	NA
SPR37785.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
SPR37787.1|173913_174585_+	exported protein	NA	NA	NA	NA	NA
SPR37789.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
SPR37791.1|175349_176300_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37793.1|176296_176770_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR37796.1|177415_177943_+	lipoprotein	NA	NA	NA	NA	NA
SPR37799.1|178034_178850_+	lipoprotein	NA	NA	NA	NA	NA
SPR37801.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
SPR37804.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
SPR37807.1|182010_182283_-	exported protein	NA	NA	NA	NA	NA
SPR37809.1|182384_183470_+	iron sulfur binding protein	NA	NA	NA	NA	NA
SPR37811.1|183473_185378_+	exported protein	NA	NA	NA	NA	NA
SPR37814.1|185374_189049_+	exported protein	NA	NA	NA	NA	NA
SPR37816.1|189109_189673_+	deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
SPR37818.1|189680_190103_-	conseved hypothetical protein	NA	NA	NA	NA	NA
SPR37820.1|190130_190550_-	lyase	NA	NA	NA	NA	NA
SPR37826.1|190578_190926_-	partial	NA	NA	NA	NA	NA
SPR37828.1|191199_191649_+	hypothetical protein	NA	NA	NA	NA	NA
SPR37829.1|191803_194074_+	Orn/Arg/Lys decarboxylase	NA	NA	NA	NA	NA
SPR37832.1|194149_195355_+	exported protein	NA	NA	NA	NA	NA
SPR37834.1|195453_196404_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37837.1|196506_197142_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
SPR37839.1|197138_198032_+	metal transporter	NA	NA	NA	NA	NA
SPR37842.1|198426_199527_+	glycine cleavage system aminomethyltransferase	NA	NA	NA	NA	NA
SPR37870.1|199608_199983_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
SPR37884.1|200042_202907_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
SPR37887.1|203051_203792_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR37890.1|203861_205073_+	hypothetical protein	NA	NA	NA	NA	NA
SPR37892.1|205104_206070_+	exported protein	NA	NA	NA	NA	NA
SPR37894.1|206087_206585_+	partial	NA	NA	NA	NA	NA
SPR37896.1|206683_207634_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37899.1|207790_208114_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
SPR37901.1|208218_209259_-	hypothetical protein	NA	NA	NA	NA	NA
SPR37903.1|209264_210044_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
SPR37906.1|210089_210386_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR37908.1|210411_210687_-	methylmuconolactone isomerase	NA	NA	NA	NA	NA
SPR37910.1|210743_211388_-	3-oxoadipate CoA-transferase subunit B	NA	NA	NA	NA	NA
SPR37912.1|211387_212074_-	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA
SPR37914.1|212272_213055_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR37916.1|213105_213831_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR37919.1|213862_215212_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
SPR37921.1|215323_216256_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR37923.1|216713_219509_-|protease	autotransporter subtilisin-like protease	protease	NA	NA	NA	NA
SPR37925.1|220102_222946_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SPR37928.1|223116_223836_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
SPR37931.1|223874_224423_-	acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
SPR37933.1|224577_225477_+	virginiamycin B lyase	NA	NA	NA	NA	NA
SPR37936.1|225501_226452_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 3
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	234384	287972	4137378	transposase,tRNA,protease	Bacillus_phage(22.22%)	51	NA	NA
SPR37952.1|234384_235335_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37955.1|235421_236372_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR37957.1|236368_237319_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR37962.1|237417_238215_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR37965.1|238320_239037_-	MBL fold hydrolase	NA	NA	NA	NA	NA
SPR37967.1|239164_239575_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
SPR37969.1|239824_240580_+	partial	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
SPR37972.1|240596_241310_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR37974.1|241383_242427_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR37976.1|242597_244700_+	membrane protein	NA	NA	NA	NA	NA
SPR37979.1|245253_246084_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR37981.1|246110_247067_+	putative exported protein	NA	NA	NA	NA	NA
SPR37983.1|247085_247577_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SPR37985.1|247573_248929_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
SPR37988.1|248929_249628_-	hypothetical protein	NA	NA	NA	NA	NA
SPR37990.1|249624_250326_-	hypothetical protein	NA	NA	NA	NA	NA
SPR37993.1|250578_251628_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
SPR37995.1|251733_252675_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR37998.1|252671_254561_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
SPR38000.1|254647_255286_+	putative membrane protein	NA	NA	NA	NA	NA
SPR38003.1|255428_256673_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
SPR38004.1|256744_257281_-	hypothetical protein	NA	NA	NA	NA	NA
SPR38006.1|257432_258824_+	fumarate hydratase	NA	NA	NA	NA	NA
SPR38011.1|258840_259752_-	membrane protein	NA	NA	NA	NA	NA
SPR38013.1|259956_260940_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
SPR38015.1|261004_261904_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR38018.1|262010_263765_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR38020.1|263772_264897_-	hypothetical protein	NA	NA	NA	NA	NA
SPR38022.1|264910_265891_-	exported protein	NA	NA	NA	NA	NA
SPR38024.1|266621_267572_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38029.1|268047_268677_+	hypothetical protein	NA	NA	NA	NA	NA
SPR38031.1|268802_270380_+	cytochrome D ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
SPR38034.1|270395_271550_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
SPR38036.1|271563_271689_+	putative exported protein	NA	NA	NA	NA	NA
SPR38040.1|271685_273437_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
SPR38043.1|273433_275113_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
SPR38045.1|275175_275724_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
SPR38047.1|275834_276623_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR38049.1|276866_277145_+	exported protein	NA	NA	NA	NA	NA
SPR38051.1|277354_278209_+	outer membrane porin	NA	NA	NA	NA	NA
SPR38053.1|278188_279139_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38055.1|279416_279578_+	hypothetical protein	NA	NA	NA	NA	NA
SPR38057.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
SPR38060.1|280703_281315_-	stringent starvation protein A	NA	NA	NA	NA	NA
SPR38066.1|281473_282322_-	cytochrome C1	NA	NA	NA	NA	NA
SPR38068.1|282347_283730_-	cytochrome B	NA	NA	NA	NA	NA
SPR38070.1|283794_284436_-	ubiquinol-cytochrome C reductase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR38072.1|284575_285034_+	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SPR38074.1|285058_285835_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38077.1|285855_287025_+|protease	protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
SPR38079.1|287021_287972_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 4
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	355966	415435	4137378	transposase,tRNA	Streptococcus_phage(50.0%)	58	NA	NA
SPR38233.1|355966_356917_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38236.1|357028_357673_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR38238.1|357849_358593_-	putative membrane protein	NA	NA	NA	NA	NA
SPR38240.1|358823_360332_+	membrane protein	NA	NA	NA	NA	NA
SPR38242.1|360451_361183_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38244.1|361227_362688_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR38246.1|362712_363192_+	hypothetical protein	NA	NA	NA	NA	NA
SPR38254.1|363210_364221_+	CDP-6-deoxy-delta-34-glucoseen reductase	NA	NA	NA	NA	NA
SPR38256.1|364435_365176_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR38258.1|365433_366357_+	exported protein	NA	NA	NA	NA	NA
SPR38261.1|366353_367304_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38263.1|367402_368353_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38266.1|368434_369214_-	partial	NA	NA	NA	NA	NA
SPR38269.1|369401_370040_+	membrane protein	NA	NA	NA	NA	NA
SPR38271.1|370076_371420_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR38273.1|371842_372631_-	endonuclease	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
SPR38275.1|372768_373443_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR38278.1|373556_375011_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR38280.1|375013_376552_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR38283.1|376554_376863_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR38285.1|377093_378137_+	rod shape-determining protein	NA	NA	NA	NA	NA
SPR38287.1|378225_379110_+	cell shape-determining protein MreC	NA	NA	NA	NA	NA
SPR38289.1|379096_379660_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SPR38291.1|379673_381626_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
SPR38294.1|381622_382759_+	rod shape-determining protein	NA	NA	NA	NA	NA
SPR38296.1|382784_383840_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR38298.1|383850_385344_-	sodium:sulfate symporter	NA	NA	NA	NA	NA
SPR38301.1|385556_386132_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
SPR38303.1|386181_386928_-	hydrolase	NA	NA	NA	NA	NA
SPR38305.1|386927_387830_-	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR38307.1|388091_388880_+	exported protein	NA	NA	NA	NA	NA
SPR38309.1|389020_389512_-	putative thioredoxin	NA	NA	NA	NA	NA
SPR38311.1|389508_390249_-	phospholipid-binding protein	NA	NA	NA	NA	NA
SPR38313.1|390248_390851_-	probable phosphosugar isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
SPR38316.1|390850_391150_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38317.1|391451_392390_+	tetrapyrrole methylase	NA	NA	NA	NA	NA
SPR38319.1|392386_392959_+	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
SPR38321.1|392955_393906_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38324.1|394075_394960_+	reductase	NA	NA	NA	NA	NA
SPR38326.1|394956_395205_+	glutaredoxin family protein	NA	NA	NA	NA	NA
SPR38329.1|395201_396407_+	CoA transferase	NA	NA	NA	NA	NA
SPR38331.1|396479_397475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR38333.1|397497_398718_-	putative dehydratase/racemase	NA	NA	NA	NA	NA
SPR38335.1|398714_399359_-	Hypothetical protein	NA	NA	NA	NA	NA
SPR38337.1|399636_400989_-	partial	NA	NA	NA	NA	NA
SPR38339.1|401089_401899_-	putative IclR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR38342.1|402203_403157_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
SPR38344.1|403255_404239_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38347.1|404165_404867_-	putative exported protein	NA	NA	NA	NA	NA
SPR38350.1|404915_405686_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR38353.1|405682_406861_-	CoA transferase	NA	NA	NA	NA	NA
SPR38355.1|407028_408735_-	thiamine pyrophosphate enzyme	NA	NA	NA	NA	NA
SPR38357.1|408731_409628_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR38360.1|409668_411270_-	sulfurtransferase	NA	NA	NA	NA	NA
SPR38362.1|411307_412294_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38365.1|412368_412968_-	Hypothetical protein	NA	NA	NA	NA	NA
SPR38367.1|413428_414409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR38369.1|414484_415435_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 5
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	637838	761345	4137378	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(13.79%)	123	NA	NA
SPR38877.1|637838_638789_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38880.1|638887_639688_-	inner membrane protein	NA	NA	NA	NA	NA
SPR38882.1|639749_640133_+	thioredoxin	NA	NA	NA	NA	NA
SPR38884.1|640144_641578_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
SPR38886.1|641784_642114_-	putative conserved inner membrane protein	NA	NA	NA	NA	NA
SPR38889.1|642116_642866_-	inner membrane protein	NA	NA	NA	NA	NA
SPR38891.1|643048_643969_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR38893.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
SPR38896.1|644250_644673_+	hypothetical protein	NA	NA	NA	NA	NA
SPR38898.1|644689_645790_+	hypothetical protein	NA	NA	NA	NA	NA
SPR38900.1|645886_647404_-	exported protein	NA	NA	NA	NA	NA
SPR38902.1|647479_648319_+	putative UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
SPR38904.1|648340_649213_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR38907.1|649303_650398_-	outer membrane porin protein OmpQ	NA	NA	NA	NA	NA
SPR38909.1|650691_651642_-	IS481 family	NA	NA	NA	NA	NA
SPR38911.1|651770_652658_+	IS481 family	NA	NA	NA	NA	NA
SPR38914.1|652741_653101_-	hypothetical protein	NA	NA	NA	NA	NA
SPR38916.1|653482_654520_-	inner membrane protein	NA	NA	NA	NA	NA
SPR38919.1|654836_656177_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
SPR38921.1|656186_656639_-	inner membrane protein	NA	NA	NA	NA	NA
SPR38923.1|656735_657917_+	monooxygenase	NA	NA	NA	NA	NA
SPR38925.1|657982_659008_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38926.1|659048_659288_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR38927.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
SPR38929.1|660946_661495_+	Crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
SPR38932.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR38934.1|662166_663078_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38936.1|663151_664120_-	serine/threonine dehydratase	NA	NA	NA	NA	NA
SPR38939.1|664242_665316_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
SPR38941.1|665320_667141_-	ATP-dependent DNA helicase	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
SPR38943.1|667217_668168_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38946.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
SPR38948.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
SPR38950.1|670885_671626_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR38967.1|671639_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR38969.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR38971.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
SPR38973.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
SPR38976.1|674954_676697_+	sulfite reductase	NA	NA	NA	NA	NA
SPR38978.1|676689_677214_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR38980.1|677253_678048_-	exported protein	NA	NA	NA	NA	NA
SPR38982.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
SPR38985.1|679387_680338_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38987.1|680589_680796_-	hypothetical protein	NA	NA	NA	NA	NA
SPR38990.1|680867_681962_-	phage repressor protein	NA	NA	NA	NA	NA
SPR38992.1|682271_682970_-	phage-related membrane protein	NA	NA	NA	NA	NA
SPR38995.1|683223_684174_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR38997.1|684849_685299_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
SPR38999.1|685285_686563_+|terminase	phage terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
SPR39001.1|686565_687984_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
SPR39004.1|687955_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
SPR39006.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
SPR39008.1|689438_690038_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	41.6	3.7e-24
SPR39010.1|690466_690583_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39013.1|690607_691417_-	partial	NA	NA	NA	NA	NA
SPR39015.1|691515_692466_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39018.1|692567_693131_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	70.4	2.0e-64
SPR39020.1|693140_693392_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39022.1|693454_693937_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
SPR39024.1|693938_694139_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39026.1|694138_694534_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
SPR39029.1|694530_694929_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
SPR39031.1|694925_695348_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39033.1|695391_695538_-	hypothetical protein	NA	NA	NA	NA	NA
SPR39036.1|696287_696629_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	35.2	1.2e-08
SPR39038.1|696638_696968_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
SPR39040.1|696997_697276_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.5e-14
SPR39042.1|697301_699914_+|tail	phage tail protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
SPR39043.1|700350_700884_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
SPR39044.1|700880_701270_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
SPR39045.1|701262_705219_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
SPR39046.1|705262_705640_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39047.1|705704_705818_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39048.1|706121_706934_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39049.1|707159_707711_+	phage lysozyme	NA	NA	NA	NA	NA
SPR39050.1|708222_708504_-	hypothetical protein	NA	NA	NA	NA	NA
SPR39051.1|709053_709725_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
SPR39052.1|710080_710767_-	two component system response regulator	NA	NA	NA	NA	NA
SPR39053.1|710747_711320_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR39054.1|711385_713116_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
SPR39063.1|713168_713597_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39066.1|713599_714280_+	protein TolQ	NA	NA	NA	NA	NA
SPR39068.1|714279_714738_+	protein TolR	NA	NA	NA	NA	NA
SPR39070.1|714774_715749_+	proline-rich inner membrane protein	NA	NA	NA	NA	NA
SPR39072.1|715765_717082_+	translocation protein TolB	NA	NA	NA	NA	NA
SPR39075.1|717113_717611_+	putative peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
SPR39077.1|717697_718387_+	putative periplasmic protein	NA	NA	NA	NA	NA
SPR39080.1|718386_719436_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR39082.1|719432_720227_+	putative ABC transport ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
SPR39085.1|722408_723359_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39089.1|723338_725354_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR39091.1|725496_726726_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39094.1|726728_728171_-	pyruvate kinase	NA	NA	NA	NA	NA
SPR39096.1|728275_729421_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
SPR39098.1|729452_730250_-	rRNA small subunit methyltransferase A	NA	NA	NA	NA	NA
SPR39101.1|730274_731834_-	chaperone SurA	NA	NA	NA	NA	NA
SPR39103.1|731830_734197_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
SPR39105.1|734312_735416_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39107.1|735415_736108_+	nucleotidyl transferase	NA	NA	NA	NA	NA
SPR39109.1|736323_736953_+	putative inner membrane protein	NA	NA	NA	NA	NA
SPR39111.1|736937_737279_-	putative pterin-4-alpha-carbinolamine dehydratase	NA	NA	NA	NA	NA
SPR39113.1|737338_737941_-	outer membrane protein	NA	NA	NA	NA	NA
SPR39115.1|738046_738997_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39118.1|739156_740029_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
SPR39119.1|740369_740588_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39121.1|740627_742007_-	aminotransferase	NA	NA	NA	NA	NA
SPR39123.1|742048_743446_-	amidase	NA	NA	NA	NA	NA
SPR39125.1|743485_745138_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
SPR39127.1|745141_746026_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR39130.1|746025_746967_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR39132.1|747045_748665_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR39134.1|748831_749647_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR39137.1|749714_750284_-	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR39140.1|750284_751235_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39142.1|751554_751749_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39144.1|751889_752987_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
SPR39146.1|753020_754286_+	exported protein	NA	NA	NA	NA	NA
SPR39149.1|754443_755394_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39151.1|755637_756228_+	exported protein	NA	NA	NA	NA	NA
SPR39154.1|756243_758649_-	ferric siderophore receptor	NA	NA	NA	NA	NA
SPR39155.1|758807_759779_-	membrane protein	NA	NA	NA	NA	NA
SPR39157.1|759910_760435_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SPR39159.1|760394_761345_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 6
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	764364	830520	4137378	transposase	Streptococcus_phage(20.0%)	53	NA	NA
SPR39168.1|764364_765315_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39170.1|765430_765874_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SPR39172.1|765936_766731_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR39174.1|766896_768033_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
SPR39177.1|768103_769237_-	probable GTP-binding protein	NA	NA	NA	NA	NA
SPR39179.1|769386_769647_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR39182.1|769680_769992_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR39210.1|770416_771565_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39233.1|771679_772645_+	octaprenyl-diphosphate synthase	NA	NA	NA	NA	NA
SPR39235.1|772913_773780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR39237.1|773910_775959_+	hydantoin utilization protein A	NA	NA	NA	NA	NA
SPR39239.1|775976_777974_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
SPR39242.1|778008_779346_+	amino acid deaminase	NA	NA	NA	NA	NA
SPR39244.1|779608_781462_+|transposase	phusion between IS481 transposase and tripartite tricarboxylate transporter family receptor	transposase	NA	NA	NA	NA
SPR39246.1|781516_782998_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR39248.1|783013_783571_-	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
SPR39251.1|784049_789170_+	bifunctional hemolysin-adenylate cyclase	NA	NA	NA	NA	NA
SPR39253.1|789247_791386_+	cyclolysin secretion/procession ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
SPR39254.1|791382_792705_+	cyclolysin secretion protein CyaD	NA	NA	NA	NA	NA
SPR39257.1|792706_794131_+	cyclolysin secretion protein CyaE	NA	NA	NA	NA	NA
SPR39260.1|794224_795130_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR39262.1|795194_796109_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR39264.1|796946_797630_+	glutamate/aspartate transporter permease GltK	NA	NA	NA	NA	NA
SPR39267.1|797661_798390_+	glutamate/aspartate transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
SPR39268.1|798419_799280_+	aminotransferase	NA	NA	NA	NA	NA
SPR39270.1|799287_799854_-	membrane protein	NA	NA	NA	NA	NA
SPR39273.1|799942_800899_-	exported protein	NA	NA	NA	NA	NA
SPR39282.1|800943_801696_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
SPR39284.1|801692_803438_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
SPR39286.1|803570_804257_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR39289.1|804657_805596_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39291.1|805611_806334_-	GntR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR39294.1|806478_807486_-	Zinc-binding dehydrogenase	NA	NA	NA	NA	NA
SPR39296.1|807526_809059_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
SPR39298.1|809055_810153_-	hypothetical protein	NA	NA	NA	NA	NA
SPR39300.1|810170_810953_-	membrane protein	NA	NA	NA	NA	NA
SPR39302.1|810964_811828_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
SPR39304.1|811846_812944_-	exported protein	NA	NA	NA	NA	NA
SPR39306.1|813012_813912_-	dioxygenase	NA	NA	NA	NA	NA
SPR39308.1|813973_815668_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
SPR39310.1|815867_816803_-	mechanosensitive channel protein	NA	NA	NA	NA	NA
SPR39312.1|816908_817859_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39314.1|817957_818908_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39316.1|819006_819957_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39319.1|821120_822836_+	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
SPR39321.1|822846_823338_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
SPR39322.1|823410_824427_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
SPR39323.1|824594_825374_+	putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein	NA	NA	NA	NA	NA
SPR39324.1|825392_825920_-	lipoprotein	NA	NA	NA	NA	NA
SPR39326.1|826213_826483_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SPR39328.1|826573_828733_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SPR39331.1|828853_829573_+	putative lipoprotein	NA	NA	NA	NA	NA
SPR39333.1|829569_830520_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 7
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	911580	961742	4137378	transposase	Bacillus_phage(25.0%)	46	NA	NA
SPR39483.1|911580_912531_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39485.1|912527_913547_-	fructose-16-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
SPR39487.1|913556_916265_-	aminopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
SPR39489.1|916412_917069_+	exported protein	NA	NA	NA	NA	NA
SPR39491.1|917167_918118_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39493.1|918114_919947_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
SPR39495.1|920345_921005_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
SPR39497.1|921098_921245_+	vir-repressed protein	NA	NA	NA	NA	NA
SPR39499.1|921353_921521_+	putative exported protein	NA	NA	NA	NA	NA
SPR39501.1|921532_922213_-	lipoprotein	NA	NA	NA	NA	NA
SPR39503.1|922494_923211_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39505.1|923225_924527_-	phospholipase	NA	NA	NA	NA	NA
SPR39507.1|924661_925480_-	partial	NA	NA	NA	NA	NA
SPR39510.1|926695_929074_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
SPR39512.1|929791_931144_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
SPR39514.1|931172_931694_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
SPR39517.1|931690_933145_+	carboxylase	NA	NA	NA	NA	NA
SPR39533.1|933179_933428_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39534.1|933533_934409_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39536.1|934434_935490_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39538.1|935502_936294_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR39540.1|936326_937697_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
SPR39543.1|937712_938792_+	partial	NA	NA	NA	NA	NA
SPR39545.1|938873_939824_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39547.1|939888_940098_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39549.1|940257_940470_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39551.1|940589_941708_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
SPR39553.1|941804_942020_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39556.1|942213_942465_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39558.1|942577_943528_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39560.1|943524_943908_-	putative ferredoxin	NA	NA	NA	NA	NA
SPR39567.1|943962_945777_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
SPR39569.1|945926_946754_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
SPR39571.1|946799_947780_+	oxidoreductase	NA	NA	NA	NA	NA
SPR39573.1|947776_947989_-	putative membrane protein	NA	NA	NA	NA	NA
SPR39575.1|947985_949167_-	membrane protein	NA	NA	NA	NA	NA
SPR39578.1|949330_950065_+	serine/threonine protein phosphatase 1	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
SPR39580.1|950066_952679_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SPR39582.1|952814_954728_-	putative peptidase	NA	NA	NA	NA	NA
SPR39585.1|955343_955754_-	hypothetical protein	NA	NA	NA	NA	NA
SPR39587.1|955851_956937_+	DNA-damage-inducible protein p	NA	NA	NA	NA	NA
SPR39589.1|957035_957986_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39591.1|957982_958957_-	exported protein	NA	NA	NA	NA	NA
SPR39593.1|959081_959993_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
SPR39595.1|960269_960662_-	phage-like protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
SPR39597.1|960791_961742_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 8
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1070650	1130698	4137378	transposase,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
SPR39828.1|1070650_1072078_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR39831.1|1072234_1072648_+	partial	NA	NA	NA	NA	NA
SPR39834.1|1073015_1073945_-	IS110 family	NA	NA	NA	NA	NA
SPR39836.1|1074364_1075300_-	protein-export membrane protein	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
SPR39838.1|1075349_1077230_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR39841.1|1077296_1077641_-	putative secreted protein	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
SPR39843.1|1077785_1078922_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
SPR39846.1|1078918_1079962_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SPR39848.1|1080149_1081586_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
SPR39850.1|1081676_1082318_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR39852.1|1082740_1083670_+	IS110 family	NA	NA	NA	NA	NA
SPR39854.1|1084002_1086735_+	pertactin autotransporter	NA	NA	NA	NA	NA
SPR39856.1|1086801_1088283_-	siroheme synthase	NA	NA	NA	NA	NA
SPR39858.1|1088486_1089203_+	membrane protein	NA	NA	NA	NA	NA
SPR39860.1|1089287_1089605_+	putative membrane protein	NA	NA	NA	NA	NA
SPR39868.1|1089645_1090059_+	putative membrane protein	NA	NA	NA	NA	NA
SPR39870.1|1090060_1090420_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39872.1|1090462_1092007_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
SPR39874.1|1092090_1092921_+	transglycosylase	NA	NA	NA	NA	NA
SPR39877.1|1092955_1094110_-	aminotransferase	NA	NA	NA	NA	NA
SPR39879.1|1095141_1097430_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR39881.1|1098636_1099101_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39883.1|1099127_1100078_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39885.1|1100445_1101222_-	phosphate transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
SPR39887.1|1101266_1102124_-	phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR39889.1|1102145_1103162_-	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
SPR39892.1|1103296_1104337_-	phosphate-binding periplasmic protein precursor	NA	M4QHS4	Cyanophage	40.2	2.1e-51
SPR39894.1|1104531_1106613_-	polyphosphate kinase	NA	NA	NA	NA	NA
SPR39896.1|1106848_1108342_+	exopolyphosphatase	NA	NA	NA	NA	NA
SPR39898.1|1108460_1108571_-	hypothetical protein	NA	NA	NA	NA	NA
SPR39901.1|1108572_1109367_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR39903.1|1109587_1110946_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SPR39905.1|1110942_1111785_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
SPR39907.1|1111803_1113690_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
SPR39910.1|1113927_1114560_-	rRNA large subunit methyltransferase E	NA	NA	NA	NA	NA
SPR39912.1|1114578_1115181_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39914.1|1115332_1116283_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39917.1|1116453_1116864_+	partial	NA	NA	NA	NA	NA
SPR39920.1|1117085_1117886_-	membrane protein	NA	NA	NA	NA	NA
SPR39922.1|1117929_1118916_-	homoserine kinase	NA	NA	NA	NA	NA
SPR39924.1|1119091_1120069_+|tRNA	tRNA-dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SPR39927.1|1120065_1121016_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39929.1|1121114_1122065_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR39931.1|1122177_1122636_-	CBS domain-containing protein	NA	NA	NA	NA	NA
SPR39933.1|1122672_1123986_-	membrane protein	NA	NA	NA	NA	NA
SPR39935.1|1124003_1124375_+	membrane protein	NA	NA	NA	NA	NA
SPR39937.1|1124371_1125835_+	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
SPR39939.1|1125975_1126704_+	two component system response regulator	NA	NA	NA	NA	NA
SPR39941.1|1126685_1129535_-	two component system sensor histidine kinase	NA	NA	NA	NA	NA
SPR39943.1|1129747_1130698_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 9
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1138325	1203168	4137378	protease,tRNA,transposase	Bacillus_phage(40.0%)	48	NA	NA
SPR39967.1|1138325_1139846_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
SPR39969.1|1139852_1140608_-	probable short chain dehydrogenase	NA	NA	NA	NA	NA
SPR39972.1|1140637_1141519_-	peptide chain release factor 2	NA	NA	NA	NA	NA
SPR39974.1|1141844_1143581_-	single-stranded-DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
SPR39976.1|1143526_1144468_-	exported protein	NA	NA	NA	NA	NA
SPR39978.1|1144513_1145794_+	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
SPR39981.1|1145786_1146482_+	lipoprotein releasing system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
SPR39982.1|1146515_1147343_+	putative deoxyribonuclease	NA	NA	NA	NA	NA
SPR39984.1|1147624_1150855_+|protease	serine protease	protease	NA	NA	NA	NA
SPR39987.1|1151590_1155517_+	outer membrane ligand binding protein	NA	NA	NA	NA	NA
SPR39989.1|1155710_1157324_+	partial	NA	NA	NA	NA	NA
SPR39991.1|1157416_1159213_+|transposase	IS481 transposase phused to partial competence protein	transposase	NA	NA	NA	NA
SPR39993.1|1159254_1160181_+	hydrolase	NA	NA	NA	NA	NA
SPR39996.1|1160250_1161096_+	hypothetical protein	NA	NA	NA	NA	NA
SPR39998.1|1161163_1161718_+	transcription elongation factor	NA	NA	NA	NA	NA
SPR40002.1|1161764_1162715_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40004.1|1162813_1163437_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
SPR40006.1|1163616_1165899_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR40008.1|1166053_1168750_-	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR40011.1|1168875_1169364_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR40013.1|1169399_1171262_+	membrane protein	NA	NA	NA	NA	NA
SPR40015.1|1171240_1171450_+	oligopeptide transporter OPT family	NA	NA	NA	NA	NA
SPR40017.1|1171774_1174645_+	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR40021.1|1174690_1175905_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
SPR40023.1|1176134_1177562_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
SPR40026.1|1177659_1178751_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40027.1|1178763_1179522_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR40030.1|1179609_1180512_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR40032.1|1180508_1181459_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40034.1|1181588_1182572_-	exported protein	NA	NA	NA	NA	NA
SPR40037.1|1182626_1183349_-	probable short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR40042.1|1183816_1184683_+	partial	NA	NA	NA	NA	NA
SPR40074.1|1184827_1186183_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR40099.1|1186263_1188639_-	transcription accessory protein	NA	NA	NA	NA	NA
SPR40123.1|1188803_1190879_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
SPR40147.1|1190940_1191789_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
SPR40155.1|1191842_1192805_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SPR40157.1|1192792_1193548_+	laccase domain-containing protein	NA	NA	NA	NA	NA
SPR40159.1|1193655_1195293_+	poly-beta-hydroxybutyrate polymerase	NA	NA	NA	NA	NA
SPR40161.1|1195360_1196098_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR40164.1|1196200_1196776_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40166.1|1196948_1197485_+	exported protein	NA	NA	NA	NA	NA
SPR40168.1|1197517_1197832_+	putative exported protein	NA	NA	NA	NA	NA
SPR40171.1|1197847_1198693_+	membrane protein	NA	NA	NA	NA	NA
SPR40173.1|1198731_1200111_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
SPR40176.1|1200188_1201070_+	conserved hypotheticals protein	NA	NA	NA	NA	NA
SPR40178.1|1201168_1202119_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40180.1|1202217_1203168_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 10
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1322142	1390629	4137378	transposase	Planktothrix_phage(33.33%)	59	NA	NA
SPR40468.1|1322142_1323093_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40470.1|1323194_1323851_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
SPR40473.1|1323861_1324500_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR40474.1|1324863_1325472_-	partial	NA	NA	NA	NA	NA
SPR40476.1|1325479_1325836_+	partial	NA	NA	NA	NA	NA
SPR40479.1|1325917_1326619_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
SPR40481.1|1326619_1327387_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
SPR40483.1|1327383_1328622_-	leucine/isoleucine/valine ABC transporter permease	NA	NA	NA	NA	NA
SPR40485.1|1328621_1329548_-	high-affinity branched-chain amino acid transport system permease protein	NA	NA	NA	NA	NA
SPR40487.1|1329650_1330766_-	leucine/isoleucine/valine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR40489.1|1330781_1331732_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40491.1|1332085_1332667_-	membrane protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
SPR40493.1|1332663_1333497_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
SPR40496.1|1333707_1335021_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
SPR40498.1|1335197_1336079_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR40500.1|1336098_1336950_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR40502.1|1337002_1338091_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
SPR40504.1|1338201_1339329_-	leu/Ile/val-binding protein	NA	NA	NA	NA	NA
SPR40506.1|1339449_1340175_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40508.1|1340273_1341224_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40510.1|1341445_1341823_-	putative membrane protein	NA	NA	NA	NA	NA
SPR40512.1|1341970_1342468_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40514.1|1342464_1342992_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40516.1|1343125_1343941_+	putative exported protein	NA	NA	NA	NA	NA
SPR40519.1|1343953_1345135_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR40522.1|1345182_1346076_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR40524.1|1346202_1346673_-	hypothetical protein	NA	NA	NA	NA	NA
SPR40526.1|1346798_1347626_-	lipoprotein	NA	NA	NA	NA	NA
SPR40528.1|1347654_1348431_-	putative lipoate-protein ligase A	NA	NA	NA	NA	NA
SPR40530.1|1348427_1348703_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40532.1|1348717_1349182_-	acetyltransferase	NA	NA	NA	NA	NA
SPR40534.1|1349193_1349895_-	glutathione transferase	NA	NA	NA	NA	NA
SPR40536.1|1350004_1350505_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
SPR40538.1|1350587_1353218_-	hypothetical protein	NA	NA	NA	NA	NA
SPR40540.1|1353393_1353729_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
SPR40542.1|1353916_1355365_+	CoA-transferase	NA	NA	NA	NA	NA
SPR40544.1|1355422_1355767_+	putative arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
SPR40546.1|1355873_1356413_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR40548.1|1356505_1357456_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40550.1|1358807_1359212_-	membrane protein	NA	NA	NA	NA	NA
SPR40552.1|1360448_1360772_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40554.1|1360774_1361662_-	putative exported protein	NA	NA	NA	NA	NA
SPR40556.1|1361694_1362120_-	universal stress family protein	NA	NA	NA	NA	NA
SPR40558.1|1362191_1362545_-	partial	NA	NA	NA	NA	NA
SPR40560.1|1362784_1363291_-	putative membrane protein	NA	NA	NA	NA	NA
SPR40562.1|1363329_1364661_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR40564.1|1364720_1365536_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
SPR40566.1|1365532_1366387_+	pyridoxine kinase	NA	NA	NA	NA	NA
SPR40568.1|1366487_1368407_+	ATPase	NA	NA	NA	NA	NA
SPR40570.1|1373359_1375114_-	alpha amylase	NA	NA	NA	NA	NA
SPR40572.1|1375110_1377231_-	glycosyl hydrolase	NA	NA	NA	NA	NA
SPR40575.1|1377235_1379431_-	14-alpha-glucan-branching protein	NA	NA	NA	NA	NA
SPR40577.1|1379427_1382769_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
SPR40579.1|1385571_1386522_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40581.1|1386587_1386767_-	hypothetical protein	NA	NA	NA	NA	NA
SPR40583.1|1386883_1387639_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40585.1|1387625_1388771_-	hypothetical protein	NA	NA	NA	NA	NA
SPR40587.1|1388824_1389661_-	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA	NA
SPR40589.1|1389678_1390629_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 11
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1494351	1552595	4137378	transposase,tRNA	Planktothrix_phage(28.57%)	55	NA	NA
SPR40786.1|1494351_1495302_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40788.1|1495419_1496346_+	putative membrane protein	NA	NA	NA	NA	NA
SPR40790.1|1496411_1497569_+	membrane protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
SPR40792.1|1497549_1498017_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
SPR40794.1|1498164_1499115_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40796.1|1499131_1499566_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40798.1|1499555_1499906_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40800.1|1500102_1501257_+	probable acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR40802.1|1501253_1502426_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR40805.1|1502473_1503367_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR40807.1|1503412_1503850_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR40809.1|1503909_1504599_+	membrane protein	NA	NA	NA	NA	NA
SPR40811.1|1504608_1505559_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40814.1|1505657_1506608_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40815.1|1506706_1507669_-	transaldolase B	NA	H6WFR1	Cyanophage	29.2	7.5e-11
SPR40818.1|1507895_1509050_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
SPR40820.1|1509060_1512303_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
SPR40822.1|1512452_1513160_+	partial	NA	NA	NA	NA	NA
SPR40824.1|1513324_1513969_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
SPR40826.1|1513979_1514879_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR40828.1|1514926_1516012_-	probable ATP-binding component of ABC transporter	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
SPR40830.1|1516008_1517703_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR40832.1|1517736_1517895_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40834.1|1517881_1518832_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR40836.1|1519318_1520344_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
SPR40838.1|1520385_1521447_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
SPR40840.1|1521480_1522317_+	lipoprotein	NA	NA	NA	NA	NA
SPR40842.1|1522326_1522869_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
SPR40844.1|1522882_1524175_-	molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
SPR40846.1|1524171_1524765_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
SPR40848.1|1524917_1526015_+	putative iron sulfur binding protein	NA	NA	NA	NA	NA
SPR40850.1|1526021_1526582_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40852.1|1526578_1527259_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40854.1|1527315_1529373_+	iron-sulfur binding protein	NA	NA	NA	NA	NA
SPR40856.1|1529369_1529999_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40857.1|1530150_1530360_+	hypothetical protein	NA	NA	NA	NA	NA
SPR40859.1|1530374_1533344_+	formate dehydrogenase	NA	NA	NA	NA	NA
SPR40861.1|1533589_1533982_+	formate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR40863.1|1533978_1534212_+	putative lipoprotein	NA	NA	NA	NA	NA
SPR40865.1|1534224_1535382_+	formate dehydrogenase subunit C	NA	NA	NA	NA	NA
SPR40867.1|1535404_1535779_+	exported protein	NA	NA	NA	NA	NA
SPR40869.1|1535812_1536928_-	hypothetical protein	NA	NA	NA	NA	NA
SPR40871.1|1537827_1538532_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
SPR40873.1|1538528_1539347_+	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR40875.1|1539630_1541034_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
SPR40877.1|1541048_1541699_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
SPR40879.1|1541780_1542857_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SPR40881.1|1543043_1544174_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR40883.1|1544344_1545928_+	membrane protein	NA	NA	NA	NA	NA
SPR40885.1|1545931_1546744_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SPR40887.1|1546888_1547983_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR40890.1|1548194_1548824_+	membrane protein	NA	NA	NA	NA	NA
SPR40892.1|1548826_1550494_+	membrane protein	NA	NA	NA	NA	NA
SPR40894.1|1550508_1551165_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
SPR40896.1|1551644_1552595_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 12
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1604106	1662252	4137378	transposase	Streptococcus_virus(11.11%)	53	NA	NA
SPR41010.1|1604106_1605057_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41011.1|1605063_1606176_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
SPR41014.1|1606862_1608065_+	membrane protein	NA	NA	NA	NA	NA
SPR41016.1|1608100_1608247_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41018.1|1608268_1610929_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41020.1|1610941_1614346_+	nuclease/helicase	NA	NA	NA	NA	NA
SPR41022.1|1615013_1617239_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
SPR41024.1|1617285_1617612_+	nucleoid-associated protein	NA	NA	NA	NA	NA
SPR41026.1|1617662_1618271_+	recombination protein RecR	NA	NA	NA	NA	NA
SPR41028.1|1618369_1619320_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41030.1|1619389_1620154_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41032.1|1620150_1620687_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41034.1|1620853_1621705_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
SPR41036.1|1621764_1622391_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR41039.1|1622387_1623338_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41041.1|1623436_1624558_-	exported protein	NA	NA	NA	NA	NA
SPR41043.1|1624538_1625540_-	aminopeptidase	NA	NA	NA	NA	NA
SPR41045.1|1625645_1627058_-	thiol oxidoreductase	NA	NA	NA	NA	NA
SPR41047.1|1627153_1628458_-	exported protein	NA	NA	NA	NA	NA
SPR41049.1|1628569_1629127_-	membrane protein	NA	NA	NA	NA	NA
SPR41051.1|1629397_1629952_+	chromate reductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
SPR41053.1|1630407_1630623_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41055.1|1630877_1633475_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
SPR41057.1|1633471_1634659_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41059.1|1634927_1635266_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41061.1|1635312_1635927_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
SPR41064.1|1636015_1637137_-	lipoprotein	NA	NA	NA	NA	NA
SPR41066.1|1637154_1638060_-	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR41068.1|1638145_1638544_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR41071.1|1638952_1640011_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41073.1|1639997_1640948_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41075.1|1641129_1641882_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR41077.1|1642010_1642610_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
SPR41079.1|1642606_1643335_+	glutamine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
SPR41081.1|1643347_1645627_-	guanosine-3'5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
SPR41083.1|1645651_1645855_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR41086.1|1645896_1646529_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
SPR41088.1|1646664_1647582_-	cytochrome C	NA	NA	NA	NA	NA
SPR41090.1|1647578_1648292_-	cytochrome C	NA	NA	NA	NA	NA
SPR41092.1|1648529_1649300_+	putative oxidoreductase	NA	NA	NA	NA	NA
SPR41094.1|1649304_1649904_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
SPR41096.1|1650148_1651639_+	AMP nucleosidase	NA	NA	NA	NA	NA
SPR41098.1|1651697_1651982_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR41100.1|1651978_1652107_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41103.1|1652119_1652275_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41105.1|1652547_1653474_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41107.1|1653610_1654351_+	ribonuclease PH	NA	NA	NA	NA	NA
SPR41109.1|1654517_1655894_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41111.1|1656075_1656981_+	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR41113.1|1657063_1658755_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
SPR41116.1|1658632_1660435_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41118.1|1660561_1661203_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
SPR41120.1|1661301_1662252_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 13
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1670524	1733321	4137378	transposase	Planktothrix_phage(11.11%)	51	NA	NA
SPR41137.1|1670524_1671475_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41139.1|1671573_1672368_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
SPR41141.1|1672372_1674043_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR41144.1|1674166_1675216_-	iron binding protein	NA	NA	NA	NA	NA
SPR41146.1|1675537_1676314_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
SPR41148.1|1676378_1677281_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR41150.1|1677382_1678033_+	major facilitator family protein	NA	NA	NA	NA	NA
SPR41152.1|1678574_1679378_+	25-diketo-D-gluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
SPR41154.1|1680347_1681895_+	partial	NA	NA	NA	NA	NA
SPR41156.1|1682071_1682458_+	translational inhibitor	NA	NA	NA	NA	NA
SPR41158.1|1682593_1684564_+	ATP-dependent DNA helicase	NA	NA	NA	NA	NA
SPR41160.1|1684615_1685569_+	probable LysR-family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
SPR41162.1|1685583_1686510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR41164.1|1686608_1688135_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR41166.1|1688233_1688734_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
SPR41168.1|1689057_1691043_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR41170.1|1691180_1693265_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41172.1|1693291_1694077_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
SPR41174.1|1694932_1695703_+	polysialic acid ABC transporter permease	NA	NA	NA	NA	NA
SPR41176.1|1695714_1696443_+	polysialic acid ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR41178.1|1696484_1697654_+	capsule polysaccharide export inner-membrane protein	NA	NA	NA	NA	NA
SPR41181.1|1697685_1699770_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR41183.1|1699766_1700657_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR41185.1|1700653_1701751_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
SPR41187.1|1701773_1703063_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR41189.1|1703074_1704100_+	capsular polysaccharide biosynthesis protein	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
SPR41191.1|1704096_1706154_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
SPR41193.1|1706167_1707343_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
SPR41195.1|1707424_1708375_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41197.1|1708433_1709207_+	oxidoreductase	NA	NA	NA	NA	NA
SPR41199.1|1709199_1710756_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR41201.1|1710752_1711703_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41203.1|1712166_1713054_+	oxidoreductase	NA	NA	NA	NA	NA
SPR41205.1|1713029_1713632_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR41207.1|1713871_1714573_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR41209.1|1714566_1715349_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
SPR41211.1|1715533_1716484_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41213.1|1716582_1717533_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41215.1|1717631_1718369_-	membrane protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
SPR41217.1|1718558_1719317_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR41219.1|1719363_1720353_-	exported protein	NA	NA	NA	NA	NA
SPR41221.1|1720530_1721499_-	exported protein	NA	NA	NA	NA	NA
SPR41223.1|1722530_1722983_+	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
SPR41225.1|1723038_1724007_+	regulatory protein	NA	NA	NA	NA	NA
SPR41227.1|1724015_1724957_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41229.1|1724953_1726441_+	von Willebrand factor type A domain protein	NA	NA	NA	NA	NA
SPR41231.1|1726431_1727763_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41233.1|1727759_1729106_+	exported protein	NA	NA	NA	NA	NA
SPR41235.1|1729108_1730143_+	nonspecific acid phosphatase	NA	NA	NA	NA	NA
SPR41237.1|1730192_1731818_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
SPR41239.1|1732370_1733321_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 14
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1754112	1810427	4137378	transposase,tRNA	uncultured_Caudovirales_phage(13.33%)	57	NA	NA
SPR41425.1|1754112_1755063_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41427.1|1755171_1755360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR41429.1|1755356_1756094_-	NADPH-dependent FMN reductase	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
SPR41431.1|1756071_1756344_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	71.1	1.9e-28
SPR41433.1|1756517_1757705_-	membrane protein	NA	NA	NA	NA	NA
SPR41436.1|1757708_1758059_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR41438.1|1758292_1759705_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41440.1|1759808_1760780_+	exported protein	NA	NA	NA	NA	NA
SPR41442.1|1760793_1761507_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR41445.1|1761511_1762414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR41447.1|1762535_1762832_+	putative membrane protein	NA	NA	NA	NA	NA
SPR41449.1|1762930_1763881_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41451.1|1763871_1764618_-	partial	NA	NA	NA	NA	NA
SPR41454.1|1765039_1767973_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
SPR41456.1|1767972_1768317_+	putative pH adaptation potassium efflux protein	NA	NA	NA	NA	NA
SPR41458.1|1768313_1769942_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
SPR41460.1|1769941_1770418_+	monovalent cation/H+ antiporter subunit E	NA	NA	NA	NA	NA
SPR41463.1|1770417_1770699_+	pH adaptation potassium efflux system protein F	NA	NA	NA	NA	NA
SPR41465.1|1770695_1771022_+	monovalent cation/H+ antiporter subunit G	NA	NA	NA	NA	NA
SPR41467.1|1771177_1772128_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41469.1|1772204_1772714_+	exported protein	NA	NA	NA	NA	NA
SPR41471.1|1772848_1773799_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41474.1|1773860_1774709_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41476.1|1774716_1775208_+	putative zinc-binding hydrolase	NA	S4VYT2	Pandoravirus	38.4	3.3e-07
SPR41478.1|1775204_1776206_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
SPR41481.1|1776218_1777013_-	hydratase/isomerase	NA	NA	NA	NA	NA
SPR41483.1|1778959_1779583_-	putative membrane protein	NA	NA	NA	NA	NA
SPR41486.1|1779709_1780834_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR41489.1|1781214_1782819_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
SPR41491.1|1782974_1783751_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
SPR41493.1|1783835_1784834_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR41495.1|1784830_1785604_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR41497.1|1785640_1786507_+	ABC transporter	NA	NA	NA	NA	NA
SPR41499.1|1786588_1787539_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41502.1|1787579_1788164_+	hypothetical protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
SPR41504.1|1788181_1788565_-	thioredoxin 2	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
SPR41506.1|1788700_1789264_-	luciferase family oxidoreductase	NA	NA	NA	NA	NA
SPR41509.1|1789924_1791217_-	permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
SPR41511.1|1791351_1792392_+|tRNA	tRNA N6-adenosine threonylcarbamoyltransferase	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
SPR41513.1|1792489_1793419_-	IS110 family	NA	NA	NA	NA	NA
SPR41516.1|1793773_1794409_-	putative membrane protein	NA	NA	NA	NA	NA
SPR41519.1|1794546_1795305_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
SPR41522.1|1795289_1796069_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
SPR41524.1|1796086_1796971_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
SPR41527.1|1796967_1797747_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41529.1|1797851_1798451_+	exported protein	NA	NA	NA	NA	NA
SPR41531.1|1798739_1799492_+	exported protein	NA	NA	NA	NA	NA
SPR41534.1|1799610_1801011_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
SPR41536.1|1801034_1801433_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SPR41538.1|1801608_1801809_+	putative exported protein	NA	NA	NA	NA	NA
SPR41540.1|1801947_1802676_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
SPR41542.1|1802809_1804225_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
SPR41544.1|1804228_1805092_-	rRNA large subunit methyltransferase J	NA	NA	NA	NA	NA
SPR41546.1|1806096_1808052_+	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SPR41548.1|1808033_1808582_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
SPR41550.1|1808694_1809378_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.6	1.3e-22
SPR41552.1|1809476_1810427_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 15
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1823928	1874297	4137378	transposase,tRNA,protease	Lake_Baikal_phage(18.18%)	45	NA	NA
SPR41580.1|1823928_1824879_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41582.1|1824875_1825349_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR41584.1|1825510_1826449_+	membrane protein	NA	NA	NA	NA	NA
SPR41586.1|1826450_1827659_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
SPR41588.1|1827763_1828270_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SPR41590.1|1828272_1831134_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
SPR41592.1|1831123_1832089_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
SPR41594.1|1832148_1834143_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
SPR41596.1|1834241_1835192_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41598.1|1835290_1836241_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41600.1|1836237_1836612_-	exported protein	NA	NA	NA	NA	NA
SPR41602.1|1836873_1838082_+	fatty acid desaturase	NA	NA	NA	NA	NA
SPR41605.1|1838078_1840379_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
SPR41607.1|1840431_1843044_-	exported protein	NA	NA	NA	NA	NA
SPR41609.1|1843403_1845329_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
SPR41611.1|1845325_1846222_-	50S ribosomal protein L3 glutamine methyltransferase	NA	NA	NA	NA	NA
SPR41613.1|1846228_1847368_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR41615.1|1847367_1848189_-	2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR41617.1|1848214_1848937_-	N-succinyl-LL-diaminopimelate aminotransferase	NA	NA	NA	NA	NA
SPR41619.1|1849759_1850089_-	exported protein	NA	NA	NA	NA	NA
SPR41621.1|1850471_1851728_+	autotransporter	NA	NA	NA	NA	NA
SPR41624.1|1851802_1852084_+	putative membrane protein	NA	NA	NA	NA	NA
SPR41625.1|1852125_1852446_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41627.1|1852752_1852956_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
SPR41630.1|1853039_1853606_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
SPR41631.1|1853951_1854152_+	cold shock-like protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
SPR41633.1|1854263_1854824_-	hypothetical protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
SPR41635.1|1855020_1856331_+	trigger factor	NA	NA	NA	NA	NA
SPR41637.1|1856333_1856987_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
SPR41639.1|1857091_1858396_+|protease	ATP-dependent Clp protease ATP-binding protein	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
SPR41642.1|1858584_1861038_+|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
SPR41644.1|1861161_1862112_-	probable LysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR41646.1|1862339_1863563_+	hypothetical protein	NA	NA	NA	NA	NA
SPR41648.1|1863628_1864600_+	exported protein	NA	NA	NA	NA	NA
SPR41650.1|1864666_1865068_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR41653.1|1865087_1865885_+	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR41655.1|1865881_1866313_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR41657.1|1866309_1867467_+	thiolase	NA	NA	NA	NA	NA
SPR41659.1|1867488_1868265_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR41662.1|1868267_1869446_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR41664.1|1869438_1870011_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR41666.1|1870429_1871146_+	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA
SPR41668.1|1871138_1871780_+	CoA transferase subunit B	NA	NA	NA	NA	NA
SPR41670.1|1871814_1872546_+	partial	NA	NA	NA	NA	NA
SPR41673.1|1873346_1874297_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 16
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	1997720	2032177	4137378	transposase	Mycobacterium_phage(25.0%)	35	NA	NA
SPR41954.1|1997720_1998671_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41956.1|1998769_1999177_-	N-acetyltransferase	NA	NA	NA	NA	NA
SPR41958.1|1999323_2000274_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR41960.1|2000292_2000640_-	hypothetical protein	NA	NA	NA	NA	NA
SPR41974.1|2000668_2002108_-	transmembrane efflux protein	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
SPR42006.1|2002126_2002522_-	hypothetical protein	NA	NA	NA	NA	NA
SPR42037.1|2002696_2003305_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR42053.1|2003317_2004136_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
SPR42055.1|2004087_2005062_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR42057.1|2005090_2006137_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR42059.1|2006148_2008365_-	exported oxidoreductase subunit	NA	NA	NA	NA	NA
SPR42061.1|2008378_2008837_-	oxidoreductase subunit	NA	NA	NA	NA	NA
SPR42063.1|2008994_2009339_-	exported protein	NA	NA	NA	NA	NA
SPR42065.1|2009495_2010401_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR42067.1|2010523_2011501_+	hypothetical protein	NA	NA	NA	NA	NA
SPR42069.1|2011508_2012432_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	50.2	8.0e-79
SPR42072.1|2013567_2014497_+	IS110 family	NA	NA	NA	NA	NA
SPR42074.1|2014639_2015992_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
SPR42076.1|2016166_2016463_+	putative membrane protein	NA	NA	NA	NA	NA
SPR42078.1|2016561_2017515_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR42080.1|2017607_2018558_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR42082.1|2018882_2019866_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
SPR42084.1|2019904_2020876_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR42087.1|2020879_2021734_+	hypothetical protein	NA	NA	NA	NA	NA
SPR42089.1|2021752_2022574_+	hydrolase	NA	NA	NA	NA	NA
SPR42091.1|2022605_2023400_+	amidase	NA	NA	NA	NA	NA
SPR42093.1|2024011_2024845_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR42094.1|2025130_2026636_-	hypothetical protein	NA	NA	NA	NA	NA
SPR42096.1|2026677_2027460_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR42098.1|2027529_2027976_-	membrane protein	NA	NA	NA	NA	NA
SPR42100.1|2027972_2029199_-	membrane protein	NA	NA	NA	NA	NA
SPR42103.1|2029191_2029596_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR42105.1|2029755_2030058_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR42107.1|2030054_2031005_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR42109.1|2031226_2032177_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 17
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	2715859	2756528	4137378	transposase,tRNA	Salmonella_phage(33.33%)	41	NA	NA
SPR43328.1|2715859_2716810_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43330.1|2716920_2717103_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43332.1|2717202_2717796_-	lipoprotein	NA	NA	NA	NA	NA
SPR43334.1|2717982_2719074_+	exported protein	NA	NA	NA	NA	NA
SPR43336.1|2719573_2719984_-	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR43338.1|2720042_2720372_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
SPR43340.1|2720389_2722807_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR43342.1|2722819_2723842_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
SPR43344.1|2723916_2724276_-	50s ribosomal protein	NA	NA	NA	NA	NA
SPR43346.1|2724291_2724489_-	50s ribosomal protein l35	NA	NA	NA	NA	NA
SPR43348.1|2724824_2725775_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43350.1|2725969_2726419_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
SPR43352.1|2726415_2727366_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43354.1|2727476_2728925_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43356.1|2729039_2729285_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43358.1|2729424_2730375_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43360.1|2730619_2731333_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43362.1|2731977_2732616_-	DedA family integral membrane protein	NA	NA	NA	NA	NA
SPR43364.1|2732724_2733759_+	integral membrane protein	NA	NA	NA	NA	NA
SPR43367.1|2733755_2734706_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43369.1|2734846_2735113_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43370.1|2735121_2735646_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
SPR43372.1|2735649_2735919_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43374.1|2736117_2737179_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
SPR43376.1|2737262_2738897_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
SPR43378.1|2738898_2739753_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR43381.1|2739730_2740690_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR43383.1|2740693_2742205_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR43385.1|2742244_2743300_-	partial	NA	NA	NA	NA	NA
SPR43387.1|2743680_2744151_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43388.1|2744186_2744798_-	membrane transport protein	NA	NA	NA	NA	NA
SPR43390.1|2744828_2745452_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43393.1|2745532_2747065_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43395.1|2747099_2748317_-	membrane protein	NA	NA	NA	NA	NA
SPR43397.1|2748384_2749416_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
SPR43399.1|2749412_2750582_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43401.1|2750575_2751256_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43403.1|2751417_2752260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43405.1|2752422_2753394_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR43407.1|2754466_2755537_-	FUSC family protein	NA	NA	NA	NA	NA
SPR43409.1|2755577_2756528_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 18
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	2817052	2887908	4137378	transposase	Moraxella_phage(12.5%)	58	NA	NA
SPR43516.1|2817052_2818003_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43518.1|2817999_2825661_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
SPR43520.1|2825901_2829948_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
SPR43522.1|2830305_2830842_+	integral membrane protein	NA	NA	NA	NA	NA
SPR43524.1|2830838_2832137_+	membrane permease	NA	NA	NA	NA	NA
SPR43526.1|2832216_2833245_+	exported protein	NA	NA	NA	NA	NA
SPR43527.1|2833505_2834456_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43529.1|2834452_2835403_-|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR43531.1|2835719_2836325_+	fimbrial protein	NA	NA	NA	NA	NA
SPR43533.1|2836378_2837692_-	phenylacetate-coenzyme A ligase	NA	NA	NA	NA	NA
SPR43535.1|2837766_2838237_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR43537.1|2838236_2839025_-	2-(12-epoxy-12-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
SPR43539.1|2839035_2840688_-	oxidoreductase	NA	NA	NA	NA	NA
SPR43541.1|2840775_2841726_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43543.1|2841712_2842876_-	PaaK subunit	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
SPR43545.1|2842887_2843394_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR43547.1|2843390_2844155_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR43549.1|2844170_2844455_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
SPR43551.1|2844519_2845509_-	12-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
SPR43553.1|2845680_2846610_+	phenylacetic acid degradation operon negative regulatory protein	NA	NA	NA	NA	NA
SPR43555.1|2846581_2847268_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
SPR43557.1|2847301_2847847_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
SPR43559.1|2847891_2849157_+	peptidase M48	NA	NA	NA	NA	NA
SPR43561.1|2849153_2850056_+	putative ATP/GTP-binding protein	NA	NA	NA	NA	NA
SPR43562.1|2850353_2851241_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR43564.1|2851237_2852182_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR43567.1|2852276_2853794_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR43569.1|2853835_2855464_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR43571.1|2855571_2856453_+	LysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR43573.1|2857532_2858990_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
SPR43575.1|2859106_2859451_-	partial	NA	NA	NA	NA	NA
SPR43577.1|2859565_2859940_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
SPR43579.1|2859964_2860303_-	nitrogen regulatory protein	NA	NA	NA	NA	NA
SPR43581.1|2860346_2861981_-	NAD synthetase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
SPR43584.1|2862019_2863366_-	putative membrane transport protein	NA	NA	NA	NA	NA
SPR43586.1|2863473_2864895_+	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR43588.1|2864964_2865549_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43590.1|2865651_2866602_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43592.1|2866736_2867843_+	molybdenum-binding protein	NA	NA	NA	NA	NA
SPR43594.1|2867853_2868951_+	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
SPR43596.1|2869095_2870301_-	molybdopterin cofactor biosynthesis protein	NA	NA	NA	NA	NA
SPR43598.1|2870307_2870829_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
SPR43600.1|2870825_2871308_-	molybdopterin converting factor	NA	NA	NA	NA	NA
SPR43602.1|2871313_2871565_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
SPR43604.1|2871545_2872031_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
SPR43605.1|2872166_2875628_+	exported protein	NA	NA	NA	NA	NA
SPR43607.1|2875645_2876530_+	hydrolase	NA	NA	NA	NA	NA
SPR43609.1|2876539_2876971_-	lipoprotein	NA	NA	NA	NA	NA
SPR43611.1|2877217_2877721_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
SPR43614.1|2877732_2879199_+	putative membrane transport protein	NA	NA	NA	NA	NA
SPR43616.1|2879273_2880149_-	exported protein	NA	NA	NA	NA	NA
SPR43618.1|2880145_2881153_-	biotin synthase	NA	NA	NA	NA	NA
SPR43620.1|2881620_2881926_+	exported protein	NA	NA	NA	NA	NA
SPR43622.1|2882016_2882607_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43624.1|2882797_2883727_-	IS110 family	NA	NA	NA	NA	NA
SPR43626.1|2884005_2886342_-	membrane transport ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
SPR43628.1|2886424_2886859_+	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR43630.1|2886957_2887908_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 19
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	2895933	2952719	4137378	transposase,protease	uncultured_Mediterranean_phage(33.33%)	44	NA	NA
SPR43640.1|2895933_2896884_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43641.1|2897437_2898484_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
SPR43642.1|2898590_2898857_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43643.1|2899564_2899903_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SPR43644.1|2899928_2900654_+	ammonium transporter	NA	NA	NA	NA	NA
SPR43645.1|2901231_2903352_-	autotransporter BapC	NA	NA	NA	NA	NA
SPR43646.1|2904456_2905059_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43647.1|2905155_2906445_+	membrane transport protein	NA	NA	NA	NA	NA
SPR43648.1|2906502_2907234_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
SPR43649.1|2907230_2908034_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
SPR43650.1|2908030_2909119_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR43651.1|2909115_2910045_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR43652.1|2910193_2911339_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR43653.1|2911360_2912311_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43654.1|2912641_2916463_-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
SPR43655.1|2916619_2917288_-	lipoprotein	NA	NA	NA	NA	NA
SPR43656.1|2917292_2918966_-	membrane protein	NA	NA	NA	NA	NA
SPR43657.1|2918984_2920181_-	exported protein	NA	NA	NA	NA	NA
SPR43658.1|2920308_2922624_-|protease	ATP-dependent Clp protease ATP-binding protein	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
SPR43659.1|2922679_2924848_-	penicillin-binding protein	NA	NA	NA	NA	NA
SPR43660.1|2924844_2930025_-	exported protein	NA	NA	NA	NA	NA
SPR43661.1|2930123_2930438_-|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
SPR43662.1|2930665_2930911_+	putative cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
SPR43663.1|2931032_2931524_+	exported protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
SPR43664.1|2931623_2932829_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
SPR43665.1|2932944_2934342_-	putative chloride-channel protein	NA	NA	NA	NA	NA
SPR43666.1|2934458_2935037_-	superoxide dismutase	NA	NA	NA	NA	NA
SPR43667.1|2936668_2937619_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43668.1|2937899_2938520_+	putative biopolymer transport protein	NA	NA	NA	NA	NA
SPR43669.1|2938516_2938930_+	biopolymer transport protein	NA	NA	NA	NA	NA
SPR43670.1|2938926_2939970_+	putative tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SPR43671.1|2940025_2940214_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR43672.1|2940223_2940988_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
SPR43673.1|2941078_2941735_+	adenylate kinase	NA	NA	NA	NA	NA
SPR43674.1|2941826_2942585_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR43675.1|2942643_2944212_+	MurJ-like protein	NA	NA	NA	NA	NA
SPR43676.1|2944412_2945417_+	membrane protein	NA	NA	NA	NA	NA
SPR43677.1|2945517_2945781_+	30s ribosomal protein s20	NA	NA	NA	NA	NA
SPR43678.1|2945898_2946666_-	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
SPR43679.1|2947265_2948216_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43680.1|2948212_2948764_-	partial	NA	NA	NA	NA	NA
SPR43681.1|2949591_2950551_-	partial	NA	NA	NA	NA	NA
SPR43682.1|2950599_2951712_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR43683.1|2951768_2952719_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 20
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	2983105	3022294	4137378	transposase,tRNA	Planktothrix_phage(50.0%)	39	NA	NA
SPR43714.1|2983105_2984056_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43715.1|2984176_2985073_-	inositol monophosphatase	NA	NA	NA	NA	NA
SPR43716.1|2985230_2986418_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR43717.1|2986363_2987056_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR43718.1|2987350_2989576_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43719.1|2989740_2990829_+	ABC transport protein ATP-binding component	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
SPR43720.1|2990785_2991439_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR43721.1|2991486_2992284_+	lipoprotein	NA	NA	NA	NA	NA
SPR43722.1|2992815_2993766_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43723.1|2993846_2994995_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SPR43724.1|2995051_2996002_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43725.1|2996100_2996406_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43726.1|2996434_2996869_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR43727.1|2996870_2998115_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43728.1|2998111_2998762_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43729.1|2998836_2999820_-	exported protein	NA	NA	NA	NA	NA
SPR43730.1|3000167_3000515_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43731.1|3000985_3001885_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR43732.1|3001881_3002748_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR43733.1|3002734_3003562_+	ABC transport protein inner membrane component	NA	NA	NA	NA	NA
SPR43734.1|3003572_3004700_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
SPR43735.1|3004692_3005685_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR43736.1|3005777_3007016_+	IS481 family	NA	NA	NA	NA	NA
SPR43737.1|3007060_3008320_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR43738.1|3008326_3009079_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR43739.1|3009130_3009316_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43740.1|3009474_3010056_+	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR43741.1|3010135_3010747_+	hydrolase	NA	NA	NA	NA	NA
SPR43742.1|3010891_3013000_+	exported protein	NA	NA	NA	NA	NA
SPR43743.1|3012996_3013947_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43744.1|3014050_3014671_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR43745.1|3014774_3015515_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR43746.1|3015832_3016456_+	IS3 family	NA	NA	NA	NA	NA
SPR43747.1|3016916_3017696_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43748.1|3017526_3018417_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43749.1|3018429_3019380_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43750.1|3019366_3020407_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43751.1|3020415_3021027_-	partial	NA	NA	NA	NA	NA
SPR43752.1|3021343_3022294_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 21
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	3212293	3285065	4137378	transposase,tRNA	Xanthomonas_phage(14.29%)	60	NA	NA
SPR43925.1|3212293_3213244_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43926.1|3213342_3214293_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43927.1|3214301_3214850_+	lipid A palmitoyltransferase	NA	NA	NA	NA	NA
SPR43928.1|3214846_3215455_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43929.1|3215637_3216096_-	glutamate uptake regulatory protein	NA	NA	NA	NA	NA
SPR43930.1|3216114_3217383_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR43931.1|3217438_3218251_-	oxidoreductase	NA	NA	NA	NA	NA
SPR43932.1|3218365_3218920_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR43933.1|3218929_3219919_-	membrane protein	NA	NA	NA	NA	NA
SPR43934.1|3220098_3220818_-	VOC family protein	NA	NA	NA	NA	NA
SPR43935.1|3220834_3223570_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
SPR43936.1|3223749_3224736_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
SPR43937.1|3224777_3225272_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43938.1|3225383_3226307_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
SPR43939.1|3226535_3227720_-	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR43940.1|3227908_3229135_-	cell division protein FtsA	NA	NA	NA	NA	NA
SPR43941.1|3229139_3229961_-	cell division protein FtsQ	NA	NA	NA	NA	NA
SPR43942.1|3229973_3230924_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SPR43943.1|3230920_3232327_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SPR43944.1|3232323_3233397_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR43945.1|3233393_3234587_-	lipid II flippase FtsW	NA	NA	NA	NA	NA
SPR43946.1|3234583_3236116_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR43947.1|3236112_3237282_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR43948.1|3237271_3240109_-	bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR43949.1|3240105_3241836_-	peptidoglycan synthetase	NA	NA	NA	NA	NA
SPR43950.1|3241832_3242111_-	cell division protein FtsL	NA	NA	NA	NA	NA
SPR43951.1|3242110_3243205_-	S-adenosyl-methyltransferase	NA	NA	NA	NA	NA
SPR43952.1|3243213_3243564_-	cell division protein MraZ	NA	NA	NA	NA	NA
SPR43953.1|3244444_3246253_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
SPR43954.1|3246292_3247357_-	dihydroorotase	NA	NA	NA	NA	NA
SPR43955.1|3247368_3248562_-	hydrolase	NA	NA	NA	NA	NA
SPR43956.1|3248711_3248990_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43957.1|3249318_3249684_-	putative membrane protein	NA	NA	NA	NA	NA
SPR43958.1|3256435_3256897_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SPR43959.1|3257064_3258177_+	hemolysin	NA	NA	NA	NA	NA
SPR43960.1|3258244_3258805_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SPR43961.1|3258828_3259161_-	cytochrome C552 precursor	NA	NA	NA	NA	NA
SPR43962.1|3259144_3260833_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR43963.1|3260952_3261741_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SPR43964.1|3261715_3262288_-	DUF541 domain-containing protein	NA	NA	NA	NA	NA
SPR43965.1|3262448_3263399_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43966.1|3263843_3264155_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR43967.1|3264154_3264601_-	hypothetical protein	NA	NA	NA	NA	NA
SPR43968.1|3264847_3265798_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43969.1|3266087_3266552_+	putative membrane protein	NA	NA	NA	NA	NA
SPR43970.1|3266566_3268072_+	membrane protein	NA	NA	NA	NA	NA
SPR43971.1|3268328_3269933_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR43972.1|3270060_3270894_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR43973.1|3270942_3271296_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
SPR43974.1|3271334_3272285_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR43975.1|3272423_3273176_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
SPR43976.1|3273450_3275139_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
SPR43977.1|3275227_3276418_+	hypothetical protein	NA	NA	NA	NA	NA
SPR43978.1|3276432_3277527_-|tRNA	tRNA CCA-pyrophosphorylase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
SPR43979.1|3277523_3279650_-	putative transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
SPR43980.1|3279662_3280343_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR43981.1|3280578_3281994_+	integral membrane transport protein	NA	NA	NA	NA	NA
SPR43982.1|3281995_3283015_+	aminohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
SPR43983.1|3283078_3284050_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR43984.1|3284114_3285065_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 22
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	3304764	3346978	4137378	transposase,protease	Erwinia_phage(50.0%)	39	NA	NA
SPR44005.1|3304764_3305304_+|protease	ATP-dependent protease subunit HsIV	protease	NA	NA	NA	NA
SPR44006.1|3305325_3306660_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
SPR44007.1|3306673_3306979_-	RND transporter	NA	NA	NA	NA	NA
SPR44008.1|3307403_3307985_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
SPR44009.1|3308066_3309017_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44010.1|3309115_3310066_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44011.1|3310282_3311857_+	phospholipase D	NA	NA	NA	NA	NA
SPR44012.1|3311863_3312973_-	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
SPR44013.1|3312984_3313665_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
SPR44014.1|3313686_3314442_-	molybdate-binding periplasmic protein precursor	NA	NA	NA	NA	NA
SPR44015.1|3314577_3315459_-	putative hydrolase	NA	NA	NA	NA	NA
SPR44016.1|3315549_3316131_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44017.1|3316223_3316346_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44018.1|3316391_3316691_-	exported protein	NA	NA	NA	NA	NA
SPR44019.1|3316842_3317322_-	membrane protein	NA	NA	NA	NA	NA
SPR44020.1|3317337_3317703_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44021.1|3318041_3319478_-	probable TonB-dependent receptor	NA	NA	NA	NA	NA
SPR44022.1|3319474_3319903_-	regulatory protein	NA	NA	NA	NA	NA
SPR44023.1|3319993_3320944_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44024.1|3321025_3321397_-	partial	NA	NA	NA	NA	NA
SPR44025.1|3321471_3322245_-	putative molybdate-binding periplasmic protein	NA	NA	NA	NA	NA
SPR44026.1|3322377_3323388_-	putative exported protein	NA	NA	NA	NA	NA
SPR44027.1|3323539_3325195_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR44028.1|3325249_3325591_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44029.1|3325604_3327044_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44030.1|3327176_3327992_-	probable MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR44031.1|3328185_3329136_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44032.1|3329132_3330095_-	MFS transporter	NA	NA	NA	NA	NA
SPR44033.1|3330529_3331471_+	putative membrane protein	NA	NA	NA	NA	NA
SPR44034.1|3331697_3332438_+	putative TetR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR44035.1|3332523_3333474_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44036.1|3333860_3334346_+	partial	NA	NA	NA	NA	NA
SPR44037.1|3334361_3334865_+	partial	NA	NA	NA	NA	NA
SPR44038.1|3334915_3336487_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR44039.1|3336819_3338673_+	autotransporter	NA	NA	NA	NA	NA
SPR44040.1|3338717_3341282_+	autotransporter	NA	NA	NA	NA	NA
SPR44041.1|3341700_3342651_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44042.1|3343800_3345231_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44043.1|3346027_3346978_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 23
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	3408881	3463671	4137378	transposase	Staphylococcus_phage(33.33%)	51	NA	NA
SPR44092.1|3408881_3409832_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44093.1|3410236_3410881_-	urease accessory protein UreG	NA	NA	NA	NA	NA
SPR44094.1|3410905_3411487_-	partial	NA	NA	NA	NA	NA
SPR44095.1|3411590_3412208_-	urease accessory protein UreE	NA	NA	NA	NA	NA
SPR44096.1|3412210_3413926_-	urease subunit alpha	NA	NA	NA	NA	NA
SPR44097.1|3413922_3414231_-	urease subunit beta	NA	NA	NA	NA	NA
SPR44098.1|3414247_3414865_-	urease accessory protein	NA	NA	NA	NA	NA
SPR44099.1|3414909_3415212_-	urease subunit gamma	NA	NA	NA	NA	NA
SPR44100.1|3415312_3416167_-	urease accessory protein	NA	NA	NA	NA	NA
SPR44101.1|3416748_3417021_+	MerR family	NA	NA	NA	NA	NA
SPR44102.1|3417438_3417846_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44103.1|3418215_3419010_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR44104.1|3419110_3420346_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
SPR44105.1|3420414_3421431_+	putative exported protein	NA	NA	NA	NA	NA
SPR44106.1|3421442_3422819_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44107.1|3422815_3424012_+	MFS transporter	NA	NA	NA	NA	NA
SPR44108.1|3424008_3425547_-	SpoVR family protein	NA	NA	NA	NA	NA
SPR44109.1|3425543_3426803_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44110.1|3426815_3427859_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44111.1|3428743_3429694_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44112.1|3429775_3430414_-	partial	NA	NA	NA	NA	NA
SPR44113.1|3430460_3431555_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44114.1|3431547_3432882_-	coenzyme A ligase	NA	NA	NA	NA	NA
SPR44115.1|3432835_3433519_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR44116.1|3433544_3434708_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR44117.1|3434704_3435706_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR44118.1|3435705_3436578_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR44119.1|3436574_3437324_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
SPR44120.1|3437320_3438112_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
SPR44121.1|3438108_3439248_-	amino acid binding protein	NA	NA	NA	NA	NA
SPR44122.1|3439634_3440309_+	3-hydroxy-2-methylbutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR44123.1|3440342_3441125_+	hydratase/isomerase	NA	NA	NA	NA	NA
SPR44124.1|3441128_3441518_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44125.1|3441514_3443521_+	putative protein with thiolase and hydratase domains	NA	NA	NA	NA	NA
SPR44126.1|3443556_3444645_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44127.1|3444641_3445592_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44128.1|3445945_3448924_+	partial	NA	NA	NA	NA	NA
SPR44129.1|3449090_3449606_+	partial	NA	NA	NA	NA	NA
SPR44130.1|3449850_3450729_+	fatty acid desaturase	NA	NA	NA	NA	NA
SPR44131.1|3451795_3452746_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44132.1|3453726_3454677_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44133.1|3454673_3455141_-	ribonuclease H	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
SPR44134.1|3455183_3455954_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44135.1|3455974_3456775_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
SPR44136.1|3456785_3458195_+	membrane-bound lytic murein transglycosylase D	NA	NA	NA	NA	NA
SPR44137.1|3458289_3459075_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
SPR44138.1|3459401_3460331_+	IS110 family	NA	NA	NA	NA	NA
SPR44139.1|3460438_3460831_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR44140.1|3460968_3461649_+	membrane protein	NA	NA	NA	NA	NA
SPR44141.1|3461653_3462634_-	exported protein	NA	NA	NA	NA	NA
SPR44142.1|3462720_3463671_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 24
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	3506455	3564374	4137378	transposase,tRNA	Acinetobacter_phage(33.33%)	55	NA	NA
SPR44180.1|3506455_3507406_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44181.1|3507504_3508638_-	partial	NA	NA	NA	NA	NA
SPR44182.1|3509162_3510152_+	partial	NA	NA	NA	NA	NA
SPR44183.1|3510148_3510307_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44184.1|3510327_3511116_-	indole-3-glycerol phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
SPR44185.1|3511112_3512144_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
SPR44186.1|3512162_3512726_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
SPR44187.1|3512781_3514302_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
SPR44188.1|3514565_3515270_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SPR44189.1|3515277_3516006_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SPR44190.1|3516120_3516495_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
SPR44191.1|3516537_3517827_+	membrane-bound transglycosylase	NA	NA	NA	NA	NA
SPR44192.1|3517823_3518993_+	ubiquinone biosynthesis hydroxylase family protein	NA	NA	NA	NA	NA
SPR44193.1|3519019_3519829_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR44194.1|3519888_3520824_+	2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
SPR44195.1|3520836_3521787_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44196.1|3521885_3522848_-|tRNA	tRNA 2-thiocytidine biosynthesis protein	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
SPR44197.1|3522879_3523239_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
SPR44198.1|3523363_3524266_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
SPR44199.1|3524267_3526034_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44200.1|3526074_3526851_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR44201.1|3527147_3528215_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44202.1|3528174_3529125_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44203.1|3529976_3530297_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR44204.1|3530369_3531251_+	ATP synthase A chain	NA	NA	NA	NA	NA
SPR44205.1|3531367_3531610_+	ATP synthase c chain	NA	NA	NA	NA	NA
SPR44206.1|3531747_3532218_+	ATP synthase B chain	NA	NA	NA	NA	NA
SPR44207.1|3532230_3532770_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SPR44208.1|3532804_3534346_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR44209.1|3534444_3535350_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
SPR44210.1|3535392_3536793_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR44211.1|3536802_3537225_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
SPR44212.1|3537407_3538292_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44213.1|3538367_3539444_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR44214.1|3539750_3541853_+	primosomal protein N'	NA	NA	NA	NA	NA
SPR44215.1|3541895_3543965_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
SPR44216.1|3544063_3545014_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44217.1|3545142_3546276_-	peptidase	NA	NA	NA	NA	NA
SPR44218.1|3546319_3547225_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44219.1|3547227_3548928_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
SPR44220.1|3548924_3549845_-	binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR44221.1|3549852_3550830_-	putative binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR44222.1|3550888_3551848_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
SPR44223.1|3551971_3552892_-	partial	NA	NA	NA	NA	NA
SPR44224.1|3553897_3554134_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44225.1|3554260_3555124_-	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
SPR44226.1|3555212_3556034_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR44227.1|3556113_3556851_-	putative enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR44228.1|3556847_3557819_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44229.1|3557992_3558616_+	TetR family transcriptional repressor	NA	NA	NA	NA	NA
SPR44230.1|3558660_3559809_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR44231.1|3559792_3560548_-	hypothetical protein	NA	NA	NA	NA	NA
SPR44232.1|3561229_3562051_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR44233.1|3562132_3563083_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44234.1|3563423_3564374_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
>prophage 26
LS398588	Bordetella pertussis strain VS67 genome assembly, chromosome: I	4137378	4059549	4112981	4137378	transposase	Planktothrix_phage(40.0%)	47	NA	NA
SPR44710.1|4059549_4060500_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44711.1|4060669_4061896_+	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase	NA	NA	NA	NA	NA
SPR44712.1|4062095_4062962_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
SPR44713.1|4062954_4063917_+	conserved hypothetical protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
SPR44714.1|4064017_4064968_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
SPR44715.1|4065066_4066017_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44716.1|4066115_4067066_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44717.1|4067062_4068556_-	putative outer membrane efflux protein	NA	NA	NA	NA	NA
SPR44718.1|4068552_4071660_-	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
SPR44719.1|4071656_4074725_-	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
SPR44720.1|4074721_4075972_-	HlyD family secretion protein	NA	NA	NA	NA	NA
SPR44721.1|4076152_4076905_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44722.1|4076946_4077591_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
SPR44723.1|4077599_4078439_-	type 4 prepilin-like proteins leader peptide processing enzyme	NA	NA	NA	NA	NA
SPR44724.1|4078679_4079423_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44725.1|4079505_4079853_-	putative regulatory protein	NA	NA	NA	NA	NA
SPR44726.1|4079950_4080793_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
SPR44727.1|4080837_4081725_-	segregation/condensation protein A	NA	NA	NA	NA	NA
SPR44728.1|4081751_4081940_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44729.1|4082037_4083495_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44730.1|4083481_4085008_+	glycerol kinase	NA	NA	NA	NA	NA
SPR44731.1|4085026_4085494_-	membrane protein	NA	NA	NA	NA	NA
SPR44732.1|4085493_4086516_-	exported protein	NA	NA	NA	NA	NA
SPR44733.1|4086636_4087377_-	putative amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
SPR44734.1|4087431_4088532_-	putative amino acid ABC transporter permease protein	NA	NA	NA	NA	NA
SPR44735.1|4088533_4089724_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR44736.1|4089843_4090860_-	putative ABC transporter periplasmic amino acid-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
SPR44737.1|4091178_4091850_+	cell division ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
SPR44738.1|4091846_4092755_+	putative permease protein	NA	NA	NA	NA	NA
SPR44739.1|4092966_4093614_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
SPR44740.1|4095301_4096357_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44741.1|4097465_4098542_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
SPR44742.1|4098552_4099362_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR44743.1|4099451_4100225_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR44744.1|4100407_4101358_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR44745.1|4101369_4102269_+	CoA transferase	NA	NA	NA	NA	NA
SPR44746.1|4102258_4103413_+	CAIB/BAIF family protein	NA	NA	NA	NA	NA
SPR44747.1|4103452_4104865_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44748.1|4104887_4105856_+	lipoprotein	NA	NA	NA	NA	NA
SPR44749.1|4105857_4106682_+	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR44750.1|4106678_4107440_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
SPR44751.1|4107520_4108201_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR44752.1|4108404_4109388_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
SPR44753.1|4109384_4110164_+	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR44754.1|4110293_4111484_+	hypothetical protein	NA	NA	NA	NA	NA
SPR44755.1|4111564_4112071_+	partial	NA	NA	NA	NA	NA
SPR44756.1|4112030_4112981_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
