The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	0	61595	4162738	transposase,tRNA	Natrialba_phage(12.5%)	57	NA	NA
SPR52371.1|0_1920_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein	tRNA	NA	NA	NA	NA
SPR52372.1|1916_2609_+	glucose inhibited division protein B	NA	NA	NA	NA	NA
SPR52373.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
SPR52374.1|3409_4171_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SPR52375.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
SPR52376.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
SPR52377.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
SPR52378.1|8249_8531_+	preprotein translocase SecE subunit	NA	NA	NA	NA	NA
SPR52379.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
SPR52380.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SPR52381.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SPR52382.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
SPR52383.1|11160_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SPR52384.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
SPR52385.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
SPR52386.1|20126_20588_-	lipoprotein	NA	NA	NA	NA	NA
SPR52387.1|20876_21947_+	membrane protein	NA	NA	NA	NA	NA
SPR52388.1|22269_24351_-	histidine kinase	NA	NA	NA	NA	NA
SPR52389.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
SPR52390.1|25685_26201_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR52391.1|26575_27286_+	two component system response regulator	NA	NA	NA	NA	NA
SPR52392.1|27282_28233_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52393.1|28674_29103_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52394.1|29141_30353_-	thiolase	NA	NA	NA	NA	NA
SPR52395.1|30364_30862_-	MaoC family protein	NA	NA	NA	NA	NA
SPR52396.1|31069_32005_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR52397.1|32178_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR52398.1|33048_34470_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52399.1|34625_35576_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52400.1|35674_36625_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52401.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
SPR52402.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR52403.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR52404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 17-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
SPR52405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPR52406.1|42367_43261_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52407.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SPR52408.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
SPR52409.1|44712_45663_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52410.1|45761_46712_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52411.1|47322_47847_+	exported protein	NA	NA	NA	NA	NA
SPR52412.1|47818_48055_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR52413.1|48182_49076_+	membrane protein	NA	NA	NA	NA	NA
SPR52414.1|49079_49529_-	partial	NA	NA	NA	NA	NA
SPR52415.1|50245_51493_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SPR52416.1|51489_52104_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52417.1|52239_53190_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52418.1|53288_54239_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52419.1|54326_55538_+	muropeptide transporter	NA	NA	NA	NA	NA
SPR52420.1|55649_56375_+	partial	NA	NA	NA	NA	NA
SPR52421.1|56397_56712_+	outer membrane porin protein precursor	NA	NA	NA	NA	NA
SPR52422.1|56769_57504_-	aspartate/glutamate racemase	NA	NA	NA	NA	NA
SPR52423.1|57509_58100_-	glutamate/aspartate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
SPR52424.1|58124_58814_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR52425.1|58810_59572_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR52426.1|59651_60551_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR52427.1|60644_61595_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 2
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	168040	222657	4162738	transposase,protease,tRNA	Planktothrix_phage(14.29%)	50	NA	NA
SPR52526.1|168040_168991_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52527.1|169177_170428_+	partial	NA	G9BWD6	Planktothrix_phage	33.7	5.1e-20
SPR52528.1|170434_171337_-	membrane protein	NA	NA	NA	NA	NA
SPR52529.1|171314_171944_-	LemA family protein	NA	NA	NA	NA	NA
SPR52530.1|172226_173657_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
SPR52531.1|173690_174320_+	LysE family efflux protein	NA	NA	NA	NA	NA
SPR52532.1|174368_175976_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
SPR52533.1|176012_176684_+	exported protein	NA	NA	NA	NA	NA
SPR52534.1|176765_177242_-	bacterioferritin	NA	NA	NA	NA	NA
SPR52535.1|177448_178399_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52536.1|178395_178869_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR52537.1|179514_180042_+	lipoprotein	NA	NA	NA	NA	NA
SPR52538.1|180133_180949_+	lipoprotein	NA	NA	NA	NA	NA
SPR52539.1|181009_181744_+	sulfurtransferase	NA	NA	NA	NA	NA
SPR52540.1|181781_183860_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
SPR52541.1|184109_184382_-	exported protein	NA	NA	NA	NA	NA
SPR52542.1|184483_185569_+	iron sulfur binding protein	NA	NA	NA	NA	NA
SPR52543.1|185572_187477_+	exported protein	NA	NA	NA	NA	NA
SPR52544.1|187473_191160_+	exported protein	NA	NA	NA	NA	NA
SPR52545.1|191220_191784_+	deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
SPR52546.1|191791_192214_-	conseved hypothetical protein	NA	NA	NA	NA	NA
SPR52547.1|192241_192661_-	lyase	NA	NA	NA	NA	NA
SPR52548.1|192689_193037_-	partial	NA	NA	NA	NA	NA
SPR52549.1|193310_193760_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52550.1|193914_196185_+	Orn/Arg/Lys decarboxylase	NA	NA	NA	NA	NA
SPR52551.1|196260_197466_+	exported protein	NA	NA	NA	NA	NA
SPR52552.1|197564_198515_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52553.1|198617_199253_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
SPR52554.1|199249_200143_+	metal transporter	NA	NA	NA	NA	NA
SPR52555.1|200537_201638_+	glycine cleavage system aminomethyltransferase	NA	NA	NA	NA	NA
SPR52556.1|201719_202094_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
SPR52557.1|202153_205018_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
SPR52558.1|205162_205903_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52559.1|205972_207184_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52560.1|207215_208181_+	exported protein	NA	NA	NA	NA	NA
SPR52561.1|208198_208696_+	partial	NA	NA	NA	NA	NA
SPR52562.1|208794_209745_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52563.1|209831_210782_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR52564.1|210938_211262_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
SPR52565.1|211366_212407_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52566.1|212412_213192_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
SPR52567.1|213237_213534_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52568.1|213559_213835_-	methylmuconolactone isomerase	NA	NA	NA	NA	NA
SPR52569.1|213891_214536_-	3-oxoadipate CoA-transferase subunit B	NA	NA	NA	NA	NA
SPR52570.1|214535_215222_-	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA
SPR52571.1|215420_216203_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR52572.1|216253_216979_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR52573.1|217010_218360_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
SPR52574.1|218471_219404_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR52575.1|219861_222657_-|protease	autotransporter subtilisin-like protease	protease	NA	NA	NA	NA
>prophage 3
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	228649	283842	4162738	transposase,protease,tRNA	Bacillus_phage(25.0%)	50	NA	NA
SPR52580.1|228649_229600_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52581.1|229818_230514_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52582.1|230530_231943_+	oxidoreductase	NA	NA	NA	NA	NA
SPR52583.1|232055_233486_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR52584.1|233527_235441_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
SPR52585.1|235759_236326_+	exported protein	NA	NA	NA	NA	NA
SPR52586.1|236467_237418_+	restriction endonuclease	NA	NA	NA	NA	NA
SPR52587.1|237532_238483_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52588.1|238569_239520_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR52589.1|239516_240467_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52590.1|240565_241363_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR52591.1|241468_242185_-	MBL fold hydrolase	NA	NA	NA	NA	NA
SPR52592.1|242312_242723_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
SPR52593.1|242972_243728_+	partial	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
SPR52594.1|243744_244458_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52595.1|244531_245575_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR52596.1|245745_247848_+	membrane protein	NA	NA	NA	NA	NA
SPR52597.1|248401_249232_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52598.1|249258_250215_+	putative exported protein	NA	NA	NA	NA	NA
SPR52599.1|250233_250725_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SPR52600.1|250721_252077_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
SPR52601.1|252077_252776_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52602.1|252772_253474_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52603.1|253726_254776_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
SPR52604.1|254881_255823_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR52605.1|255819_257709_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
SPR52606.1|257795_258434_+	putative membrane protein	NA	NA	NA	NA	NA
SPR52607.1|258576_259821_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
SPR52608.1|259892_260429_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52609.1|260580_261972_+	fumarate hydratase	NA	NA	NA	NA	NA
SPR52610.1|261988_262900_-	membrane protein	NA	NA	NA	NA	NA
SPR52611.1|263104_264088_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
SPR52612.1|264152_265052_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52613.1|265158_266913_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR52614.1|266920_268045_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52615.1|268058_269039_-	exported protein	NA	NA	NA	NA	NA
SPR52616.1|269769_270720_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52617.1|271195_271825_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52618.1|271950_273528_+	cytochrome D ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
SPR52619.1|273543_274698_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
SPR52620.1|274711_274837_+	putative exported protein	NA	NA	NA	NA	NA
SPR52621.1|274833_276585_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
SPR52622.1|276581_278261_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
SPR52623.1|278323_278872_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
SPR52624.1|278982_279771_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52625.1|280014_280293_+	exported protein	NA	NA	NA	NA	NA
SPR52626.1|280502_281357_+	outer membrane porin	NA	NA	NA	NA	NA
SPR52627.1|281336_282287_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52628.1|282564_282726_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52629.1|283392_283842_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 4
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	289003	338409	4162738	transposase,protease,tRNA	Streptococcus_phage(40.0%)	49	NA	NA
SPR52636.1|289003_290173_+|protease	protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
SPR52637.1|290169_291120_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52638.1|291218_292172_-	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
SPR52639.1|292476_293286_+	putative IclR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR52640.1|293386_294739_+	partial	NA	NA	NA	NA	NA
SPR52641.1|295016_295661_+	Hypothetical protein	NA	NA	NA	NA	NA
SPR52642.1|295657_296878_+	putative dehydratase/racemase	NA	NA	NA	NA	NA
SPR52643.1|296900_297896_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR52644.1|297968_299174_-	CoA transferase	NA	NA	NA	NA	NA
SPR52645.1|299170_299419_-	glutaredoxin family protein	NA	NA	NA	NA	NA
SPR52646.1|299415_300300_-	reductase	NA	NA	NA	NA	NA
SPR52647.1|300469_301420_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52648.1|301416_301989_-	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
SPR52649.1|301985_302924_-	tetrapyrrole methylase	NA	NA	NA	NA	NA
SPR52650.1|303225_303525_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52651.1|303524_304127_+	probable phosphosugar isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
SPR52652.1|304126_304867_+	phospholipid-binding protein	NA	NA	NA	NA	NA
SPR52653.1|304863_305355_+	putative thioredoxin	NA	NA	NA	NA	NA
SPR52654.1|305495_306284_-	exported protein	NA	NA	NA	NA	NA
SPR52655.1|306545_307448_+	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR52656.1|307447_308194_+	hydrolase	NA	NA	NA	NA	NA
SPR52657.1|308243_308819_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
SPR52658.1|309031_310525_+	sodium:sulfate symporter	NA	NA	NA	NA	NA
SPR52659.1|310535_311591_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR52660.1|311616_312753_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR52661.1|312749_314702_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
SPR52662.1|314715_315279_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SPR52663.1|315265_316150_-	cell shape-determining protein MreC	NA	NA	NA	NA	NA
SPR52664.1|316238_317282_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR52665.1|317512_317821_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR52666.1|317823_319362_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR52667.1|319364_320819_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR52668.1|320932_321607_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR52669.1|321744_322533_+	endonuclease	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
SPR52670.1|322955_324299_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR52671.1|324335_324974_-	membrane protein	NA	NA	NA	NA	NA
SPR52672.1|325161_325941_+	partial	NA	NA	NA	NA	NA
SPR52673.1|326022_326973_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52674.1|327071_328022_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52675.1|328018_328942_-	exported protein	NA	NA	NA	NA	NA
SPR52676.1|329199_329940_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR52677.1|330154_331165_-	CDP-6-deoxy-delta-34-glucoseen reductase	NA	NA	NA	NA	NA
SPR52678.1|331183_331663_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52679.1|331687_333148_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR52680.1|333192_333924_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52681.1|334043_335552_-	membrane protein	NA	NA	NA	NA	NA
SPR52682.1|335782_336526_+	putative membrane protein	NA	NA	NA	NA	NA
SPR52683.1|336624_337347_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52684.1|337458_338409_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 5
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	361992	419632	4162738	transposase	Paramecium_bursaria_Chlorella_virus(16.67%)	55	NA	NA
SPR52712.1|361992_362943_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52713.1|363065_363794_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
SPR52714.1|363890_365069_+	membrane protein	NA	NA	NA	NA	NA
SPR52715.1|365065_365899_+	bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
SPR52716.1|365935_366676_-	acyltransferase	NA	NA	NA	NA	NA
SPR52717.1|366795_367971_-	dihydroorotase	NA	NA	NA	NA	NA
SPR52718.1|367967_368921_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
SPR52719.1|368934_369336_-	Holliday junction resolvase	NA	NA	NA	NA	NA
SPR52720.1|369328_369934_-	DUF179 domain-containing protein	NA	NA	NA	NA	NA
SPR52721.1|370302_371151_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SPR52722.1|371147_371801_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
SPR52723.1|371817_373101_+	glutamate-1-semialdehyde 21-aminomutase	NA	NA	NA	NA	NA
SPR52724.1|373340_374966_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52725.1|375059_375461_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52726.1|375485_375920_-	probable 4-hydroxybenzoyl CoA thioesterase	NA	NA	NA	NA	NA
SPR52727.1|375921_377571_-	acid-coenzyme A ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
SPR52728.1|377611_378781_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR52729.1|378783_379647_-	hydratase/isomerase	NA	NA	NA	NA	NA
SPR52730.1|379668_380124_-	partial	NA	NA	NA	NA	NA
SPR52731.1|380458_382270_-	partial	NA	NA	NA	NA	NA
SPR52732.1|383010_383715_-	high-affinity branched-chain amino acid transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
SPR52733.1|383708_384503_-	putative branched-chain amino acid transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
SPR52734.1|384499_385465_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR52735.1|385468_386389_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR52736.1|386485_387649_-	putative ABC transporter substrate binding protein	NA	NA	NA	NA	NA
SPR52737.1|387871_388762_+	esterase	NA	NA	NA	NA	NA
SPR52738.1|388765_389269_+	MarR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR52739.1|389311_390310_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52740.1|390306_391257_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52741.1|391824_392775_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52742.1|392834_393395_+	5'(3')-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
SPR52743.1|393524_394421_+	flagellar protein FlgA	NA	NA	NA	NA	NA
SPR52744.1|394417_394864_+	flagellar protein FlgA	NA	NA	NA	NA	NA
SPR52745.1|394897_395779_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52746.1|395892_397095_+	transporter	NA	NA	NA	NA	NA
SPR52747.1|397223_399083_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR52748.1|399160_399970_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR52749.1|400040_401042_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
SPR52750.1|401073_401934_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR52751.1|402133_403138_+	acetyl esterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
SPR52752.1|403134_404721_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR52753.1|404729_405656_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
SPR52754.1|405678_406305_+	putative regulatory protein	NA	NA	NA	NA	NA
SPR52755.1|406403_407354_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52756.1|407452_408436_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52757.1|408362_409064_-	putative exported protein	NA	NA	NA	NA	NA
SPR52758.1|409112_409883_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR52759.1|409879_411058_-	CoA transferase	NA	NA	NA	NA	NA
SPR52760.1|411225_412932_-	thiamine pyrophosphate enzyme	NA	NA	NA	NA	NA
SPR52761.1|412928_413825_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR52762.1|413865_415467_-	sulfurtransferase	NA	NA	NA	NA	NA
SPR52763.1|415504_416491_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52764.1|416565_417165_-	Hypothetical protein	NA	NA	NA	NA	NA
SPR52765.1|417625_418606_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR52766.1|418681_419632_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 6
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	643083	757532	4162738	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(13.79%)	115	NA	NA
SPR52974.1|643083_644034_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR52975.1|644132_644933_-	inner membrane protein	NA	NA	NA	NA	NA
SPR52976.1|644994_645378_+	thioredoxin	NA	NA	NA	NA	NA
SPR52977.1|645389_646823_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
SPR52978.1|647029_647359_-	putative conserved inner membrane protein	NA	NA	NA	NA	NA
SPR52979.1|647361_648111_-	inner membrane protein	NA	NA	NA	NA	NA
SPR52980.1|648293_649214_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR52981.1|649260_649473_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
SPR52982.1|649495_649918_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52983.1|649934_651035_+	hypothetical protein	NA	NA	NA	NA	NA
SPR52984.1|651131_652649_-	exported protein	NA	NA	NA	NA	NA
SPR52985.1|652724_653564_+	putative UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
SPR52986.1|653585_654458_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR52987.1|654548_655643_-	outer membrane porin protein OmpQ	NA	NA	NA	NA	NA
SPR52988.1|655936_656887_-	IS481 family	NA	NA	NA	NA	NA
SPR52989.1|657015_657903_+	IS481 family	NA	NA	NA	NA	NA
SPR52990.1|657986_658346_-	hypothetical protein	NA	NA	NA	NA	NA
SPR52991.1|658727_659765_-	inner membrane protein	NA	NA	NA	NA	NA
SPR52992.1|660081_661422_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
SPR52993.1|661431_661884_-	inner membrane protein	NA	NA	NA	NA	NA
SPR52994.1|661980_663162_+	monooxygenase	NA	NA	NA	NA	NA
SPR52995.1|663227_664253_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR52996.1|664293_664533_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR52997.1|664602_666192_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
SPR52998.1|666191_666740_+	Ccrossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
SPR52999.1|666820_667393_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR53000.1|667411_668323_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53001.1|668396_669365_-	serine/threonine dehydratase	NA	NA	NA	NA	NA
SPR53002.1|669487_670561_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
SPR53003.1|670565_672386_-	ATP-dependent DNA helicase	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
SPR53004.1|672462_673413_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53005.1|673970_674621_+	carbonic anhydrase	NA	NA	NA	NA	NA
SPR53006.1|674642_676061_-	amidase	NA	NA	NA	NA	NA
SPR53007.1|676130_676871_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR53008.1|676884_677613_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR53009.1|677623_678505_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR53010.1|678521_679229_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
SPR53011.1|679231_679990_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
SPR53012.1|680199_681942_+	sulfite reductase	NA	NA	NA	NA	NA
SPR53013.1|681934_682459_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53014.1|682498_683293_-	exported protein	NA	NA	NA	NA	NA
SPR53015.1|683460_684534_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53016.1|684632_685583_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53017.1|685834_686041_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53018.1|686112_687207_-	phage repressor protein	NA	NA	NA	NA	NA
SPR53019.1|687516_688215_-	phage-related membrane protein	NA	NA	NA	NA	NA
SPR53020.1|688468_689419_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53021.1|690094_690544_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
SPR53022.1|690530_691808_+|terminase	phage terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
SPR53023.1|691810_693229_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
SPR53024.1|693200_694313_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
SPR53025.1|694318_694561_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
SPR53026.1|694683_695286_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
SPR53027.1|695714_695831_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53028.1|695855_696665_-	partial	NA	NA	NA	NA	NA
SPR53029.1|696763_697714_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53030.1|697815_698379_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	70.4	2.0e-64
SPR53031.1|698388_698640_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53032.1|698702_699185_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
SPR53033.1|699186_699387_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53034.1|699386_699782_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
SPR53035.1|699778_700177_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
SPR53036.1|700173_700596_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53037.1|700639_700786_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53038.1|701535_701877_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	35.2	1.2e-08
SPR53039.1|701886_702216_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
SPR53040.1|702245_702524_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.5e-14
SPR53041.1|702549_705162_+|tail	phage tail protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
SPR53042.1|705598_706132_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
SPR53043.1|706128_706518_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
SPR53044.1|706510_710467_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
SPR53045.1|710510_710888_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53046.1|710952_711066_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53047.1|711369_712182_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53048.1|712407_712959_+	phage lysozyme	NA	NA	NA	NA	NA
SPR53049.1|713470_713752_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53050.1|714301_714973_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
SPR53051.1|715328_716015_-	two component system response regulator	NA	NA	NA	NA	NA
SPR53052.1|715995_716568_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR53053.1|716633_718364_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
SPR53054.1|718416_718845_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53055.1|718847_719528_+	protein TolQ	NA	NA	NA	NA	NA
SPR53056.1|719527_719986_+	protein TolR	NA	NA	NA	NA	NA
SPR53057.1|720022_720997_+	proline-rich inner membrane protein	NA	NA	NA	NA	NA
SPR53058.1|721013_722330_+	translocation protein TolB	NA	NA	NA	NA	NA
SPR53059.1|722361_722859_+	putative peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
SPR53060.1|722945_723635_+	putative periplasmic protein	NA	NA	NA	NA	NA
SPR53061.1|723634_724684_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR53062.1|724680_725475_+	putative ABC transport ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
SPR53063.1|727656_728607_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53064.1|728586_730602_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR53065.1|730744_731974_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53066.1|731976_733419_-	pyruvate kinase	NA	NA	NA	NA	NA
SPR53067.1|733523_734669_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
SPR53068.1|734700_735498_-	rRNA small subunit methyltransferase A	NA	NA	NA	NA	NA
SPR53069.1|735522_737082_-	chaperone SurA	NA	NA	NA	NA	NA
SPR53070.1|737078_739445_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
SPR53071.1|739560_740664_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53072.1|740663_741356_+	nucleotidyl transferase	NA	NA	NA	NA	NA
SPR53073.1|741571_742201_+	putative inner membrane protein	NA	NA	NA	NA	NA
SPR53074.1|742185_742527_-	putative pterin-4-alpha-carbinolamine dehydratase	NA	NA	NA	NA	NA
SPR53075.1|742586_743189_-	outer membrane protein	NA	NA	NA	NA	NA
SPR53076.1|743294_744245_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53077.1|744343_745294_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53078.1|745453_746326_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
SPR53079.1|746666_746885_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53080.1|746924_748304_-	aminotransferase	NA	NA	NA	NA	NA
SPR53081.1|748345_749743_-	amidase	NA	NA	NA	NA	NA
SPR53082.1|749782_751435_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
SPR53083.1|751438_752323_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR53084.1|752322_753264_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR53085.1|753342_754962_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR53086.1|755128_755944_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR53087.1|756011_756581_-	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR53088.1|756581_757532_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 7
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	760740	830792	4162738	transposase	Streptococcus_phage(16.67%)	55	NA	NA
SPR53092.1|760740_761691_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53093.1|761934_762525_+	exported protein	NA	NA	NA	NA	NA
SPR53094.1|762540_764946_-	ferric siderophore receptor	NA	NA	NA	NA	NA
SPR53095.1|765104_766076_-	membrane protein	NA	NA	NA	NA	NA
SPR53096.1|766207_766732_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SPR53097.1|766691_767642_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53098.1|767863_770059_-	DNA methylase	NA	NA	NA	NA	NA
SPR53099.1|770131_770560_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR53100.1|770661_771612_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53101.1|771727_772171_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SPR53102.1|772233_773028_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR53103.1|773193_774330_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
SPR53104.1|774400_775534_-	probable GTP-binding protein	NA	NA	NA	NA	NA
SPR53105.1|775683_775944_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR53106.1|775977_776289_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR53107.1|776713_777862_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53108.1|777976_778942_+	octaprenyl-diphosphate synthase	NA	NA	NA	NA	NA
SPR53109.1|779210_780077_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53110.1|780207_782256_+	hydantoin utilization protein A	NA	NA	NA	NA	NA
SPR53111.1|782273_784271_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
SPR53112.1|784305_785643_+	amino acid deaminase	NA	NA	NA	NA	NA
SPR53113.1|785905_787759_+|transposase	phusion between IS481 transposase and tripartite tricarboxylate transporter family receptor	transposase	NA	NA	NA	NA
SPR53114.1|787813_789295_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR53115.1|789310_789868_-	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
SPR53116.1|790346_795467_+	bifunctional hemolysin-adenylate cyclase	NA	NA	NA	NA	NA
SPR53117.1|795544_797683_+	cyclolysin secretion/procession ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
SPR53118.1|797679_799002_+	cyclolysin secretion protein CyaD	NA	NA	NA	NA	NA
SPR53119.1|799003_800428_+	cyclolysin secretion protein CyaE	NA	NA	NA	NA	NA
SPR53120.1|800521_801427_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53121.1|801491_802406_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR53122.1|803243_803927_+	glutamate/aspartate transporter permease GltK	NA	NA	NA	NA	NA
SPR53123.1|803958_804687_+	glutamate/aspartate transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
SPR53124.1|804716_805577_+	aminotransferase	NA	NA	NA	NA	NA
SPR53125.1|805584_806151_-	membrane protein	NA	NA	NA	NA	NA
SPR53126.1|806239_807196_-	exported protein	NA	NA	NA	NA	NA
SPR53127.1|807240_807993_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
SPR53128.1|807989_809735_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
SPR53129.1|809867_810554_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53130.1|810954_811893_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53131.1|811908_812631_-	GntR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR53132.1|812775_813783_-	Zinc-binding dehydrogenase	NA	NA	NA	NA	NA
SPR53133.1|813823_815356_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
SPR53134.1|815352_816450_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53135.1|816467_817250_-	membrane protein	NA	NA	NA	NA	NA
SPR53136.1|817261_818125_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
SPR53137.1|818143_819241_-	exported protein	NA	NA	NA	NA	NA
SPR53138.1|819309_820209_-	dioxygenase	NA	NA	NA	NA	NA
SPR53139.1|820270_821965_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
SPR53140.1|822164_823100_-	mechanosensitive channel protein	NA	NA	NA	NA	NA
SPR53141.1|823205_824156_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53142.1|824254_825205_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53143.1|825303_825960_-	exported protein	NA	NA	NA	NA	NA
SPR53144.1|826107_828816_+	aminopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
SPR53145.1|828825_829845_+	fructose-16-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
SPR53146.1|829841_830792_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 8
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	863539	923366	4162738	transposase,holin	Vibrio_phage(25.0%)	50	NA	NA
SPR53174.1|863539_864490_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53175.1|864507_865062_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53176.1|865063_865498_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53177.1|865494_865929_+	exported protein	NA	NA	NA	NA	NA
SPR53178.1|865912_866716_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR53179.1|866732_867548_-	DNA repair exonuclease	NA	NA	NA	NA	NA
SPR53180.1|867544_868360_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SPR53181.1|868506_869208_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53182.1|869235_871194_-|holin	high-affinity choline transport protein	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
SPR53183.1|871276_872227_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53184.1|872447_873116_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR53185.1|873239_874346_+	HlyD family secretion protein	NA	NA	NA	NA	NA
SPR53186.1|874358_877472_+	multidrug efflux system membrane protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
SPR53187.1|877468_878962_+	multidrug efflux system outer membrane protein	NA	NA	NA	NA	NA
SPR53188.1|878976_879648_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR53189.1|879691_880144_-	azurin	NA	NA	NA	NA	NA
SPR53190.1|880326_880974_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR53191.1|881077_883126_+	hydantoin utilization protein A	NA	NA	NA	NA	NA
SPR53192.1|883122_885135_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
SPR53193.1|885160_886495_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53194.1|886603_887596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR53195.1|887662_889747_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53196.1|889771_890743_-	exported protein	NA	NA	NA	NA	NA
SPR53197.1|890871_891903_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53198.1|891906_893058_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
SPR53199.1|893276_894152_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53200.1|894229_895054_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR53201.1|895250_896180_-	IS110 family	NA	NA	NA	NA	NA
SPR53202.1|896463_897447_-	putative exported protein	NA	NA	NA	NA	NA
SPR53203.1|897505_898633_-	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR53204.1|899045_900434_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53205.1|900464_901454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR53206.1|901564_902797_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
SPR53207.1|903078_903879_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53208.1|903901_906133_-|holin	high-affinity choline transport protein	holin	NA	NA	NA	NA
SPR53209.1|906920_907367_-	protein translocase subunit SecG	NA	NA	NA	NA	NA
SPR53210.1|907388_908135_-	triosephosphate isomerase	NA	NA	NA	NA	NA
SPR53211.1|908278_909256_-	NAD(P)H quinone oxidoreductase	NA	NA	NA	NA	NA
SPR53212.1|909889_910501_+	hypothetical protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
SPR53213.1|910494_911712_-	threonine dehydratase catabolic	NA	NA	NA	NA	NA
SPR53214.1|911852_912803_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53215.1|912799_913519_-	putative lipoprotein	NA	NA	NA	NA	NA
SPR53216.1|913639_915799_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SPR53217.1|915889_916159_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SPR53218.1|916452_916980_+	lipoprotein	NA	NA	NA	NA	NA
SPR53219.1|916998_917778_-	putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein	NA	NA	NA	NA	NA
SPR53220.1|917945_918962_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
SPR53221.1|919034_919526_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
SPR53222.1|919536_921252_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
SPR53223.1|922415_923366_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 9
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	945161	994130	4162738	transposase	Staphylococcus_phage(28.57%)	47	NA	NA
SPR53243.1|945161_946112_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53244.1|946176_946386_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53245.1|946545_946758_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53246.1|946877_947996_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
SPR53247.1|948092_948308_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53248.1|948501_948753_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53249.1|948865_949816_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53250.1|949812_950196_-	putative ferredoxin	NA	NA	NA	NA	NA
SPR53251.1|950250_952065_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
SPR53252.1|952214_953042_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
SPR53253.1|953087_954068_+	oxidoreductase	NA	NA	NA	NA	NA
SPR53254.1|954064_954277_-	putative membrane protein	NA	NA	NA	NA	NA
SPR53255.1|954273_955455_-	membrane protein	NA	NA	NA	NA	NA
SPR53256.1|955618_956353_+	serine/threonine protein phosphatase 1	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
SPR53257.1|956354_958967_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SPR53258.1|959102_961016_-	putative peptidase	NA	NA	NA	NA	NA
SPR53259.1|961631_962042_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53260.1|962139_963225_+	DNA-damage-inducible protein p	NA	NA	NA	NA	NA
SPR53261.1|963323_964274_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53262.1|964372_965323_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53263.1|965302_965398_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53264.1|965410_965962_-	decarboxylase	NA	NA	NA	NA	NA
SPR53265.1|967239_968214_+	exported protein	NA	NA	NA	NA	NA
SPR53266.1|968233_969106_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR53267.1|969102_969930_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR53268.1|969953_970358_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	5.7e-13
SPR53269.1|970841_972254_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53270.1|972358_973813_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR53271.1|973862_975266_-	tricarballylate dehydrogenase	NA	NA	NA	NA	NA
SPR53272.1|975286_976471_-	citrate utilization protein B	NA	NA	NA	NA	NA
SPR53273.1|976513_977746_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53274.1|977859_978675_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53275.1|978716_979613_+	putative transcriptional regulator	NA	NA	NA	NA	NA
SPR53276.1|979667_980528_-	fumarylacetoacetate family hydrolase	NA	NA	NA	NA	NA
SPR53277.1|980605_981679_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53278.1|981804_982779_-	exported protein	NA	NA	NA	NA	NA
SPR53279.1|982917_983907_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53280.1|983931_984507_-	membrane protein	NA	NA	NA	NA	NA
SPR53281.1|984600_986259_-	CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.9	2.3e-20
SPR53282.1|986270_987254_-	exported protein	NA	NA	NA	NA	NA
SPR53283.1|987258_987681_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53284.1|988927_989287_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53285.1|989423_990374_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53286.1|990370_991345_-	exported protein	NA	NA	NA	NA	NA
SPR53287.1|991469_992381_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
SPR53288.1|992657_993050_-	phage-like protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
SPR53289.1|993179_994130_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 10
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1101989	1154453	4162738	transposase,protease,tRNA	uncultured_Mediterranean_phage(42.86%)	44	NA	NA
SPR53386.1|1101989_1103417_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR53387.1|1103573_1103987_+	partial	NA	NA	NA	NA	NA
SPR53388.1|1104354_1105284_-	IS110 family	NA	NA	NA	NA	NA
SPR53389.1|1105703_1106639_-	protein-export membrane protein	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
SPR53390.1|1106688_1108569_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR53391.1|1108635_1108980_-	putative secreted protein	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
SPR53392.1|1109124_1110261_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
SPR53393.1|1110257_1111301_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SPR53394.1|1111488_1112925_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
SPR53395.1|1113015_1113657_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR53396.1|1114079_1115009_+	IS110 family	NA	NA	NA	NA	NA
SPR53397.1|1115341_1118074_+	pertactin autotransporter	NA	NA	NA	NA	NA
SPR53398.1|1118140_1119622_-	siroheme synthase	NA	NA	NA	NA	NA
SPR53399.1|1119825_1120542_+	membrane protein	NA	NA	NA	NA	NA
SPR53400.1|1120626_1120944_+	putative membrane protein	NA	NA	NA	NA	NA
SPR53401.1|1120984_1121398_+	putative membrane protein	NA	NA	NA	NA	NA
SPR53402.1|1121399_1121759_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53403.1|1121801_1123346_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
SPR53404.1|1123429_1124260_+	transglycosylase	NA	NA	NA	NA	NA
SPR53405.1|1124294_1125449_-	aminotransferase	NA	NA	NA	NA	NA
SPR53406.1|1126480_1128769_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR53407.1|1129975_1130440_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53408.1|1130466_1131417_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53409.1|1131515_1132466_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53410.1|1132833_1133610_-	phosphate transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
SPR53411.1|1133654_1134512_-	phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR53412.1|1134533_1135550_-	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
SPR53413.1|1135684_1136725_-	phosphate-binding periplasmic protein precursor	NA	M4QHS4	Cyanophage	40.2	2.1e-51
SPR53414.1|1136919_1139001_-	polyphosphate kinase	NA	NA	NA	NA	NA
SPR53415.1|1139236_1140730_+	exopolyphosphatase	NA	NA	NA	NA	NA
SPR53416.1|1140848_1140959_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53417.1|1140960_1141755_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53418.1|1141975_1143334_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SPR53419.1|1143330_1144173_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
SPR53420.1|1144191_1146078_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
SPR53421.1|1146315_1146948_-	rRNA large subunit methyltransferase E	NA	NA	NA	NA	NA
SPR53422.1|1146966_1147569_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53423.1|1147720_1148671_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53424.1|1148841_1149252_+	partial	NA	NA	NA	NA	NA
SPR53425.1|1149473_1150274_-	membrane protein	NA	NA	NA	NA	NA
SPR53426.1|1150317_1151304_-	homoserine kinase	NA	NA	NA	NA	NA
SPR53427.1|1151479_1152457_+|tRNA	tRNA-dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SPR53428.1|1152453_1153404_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53429.1|1153502_1154453_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 11
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1162135	1234507	4162738	transposase,protease,tRNA	Catovirus(25.0%)	57	NA	NA
SPR53436.1|1162135_1163086_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53437.1|1163253_1164078_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
SPR53438.1|1164077_1164956_+	high-affinity branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR53439.1|1165207_1165369_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53440.1|1165645_1165804_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53441.1|1165860_1166976_+	amino acids binding protein	NA	NA	NA	NA	NA
SPR53442.1|1166983_1167799_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
SPR53443.1|1167795_1169661_+	long-chain fatty-acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
SPR53444.1|1169739_1170372_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53445.1|1170368_1170671_-	membrane protein	NA	NA	NA	NA	NA
SPR53446.1|1170713_1172234_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
SPR53447.1|1172240_1172996_-	probable short chain dehydrogenase	NA	NA	NA	NA	NA
SPR53448.1|1173025_1173907_-	peptide chain release factor 2	NA	NA	NA	NA	NA
SPR53449.1|1174232_1175969_-	single-stranded-DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
SPR53450.1|1175914_1176856_-	exported protein	NA	NA	NA	NA	NA
SPR53451.1|1176901_1178182_+	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
SPR53452.1|1178174_1178870_+	lipoprotein releasing system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
SPR53453.1|1178903_1179731_+	putative deoxyribonuclease	NA	NA	NA	NA	NA
SPR53454.1|1180012_1183243_+|protease	serine protease	protease	NA	NA	NA	NA
SPR53455.1|1183978_1187905_+	outer membrane ligand binding protein	NA	NA	NA	NA	NA
SPR53456.1|1188098_1189712_+	partial	NA	NA	NA	NA	NA
SPR53457.1|1189804_1191601_+|transposase	IS481 transposase phused to partial competence protein	transposase	NA	NA	NA	NA
SPR53458.1|1191642_1192569_+	hydrolase	NA	NA	NA	NA	NA
SPR53459.1|1192638_1193484_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53460.1|1193551_1194106_+	transcription elongation factor	NA	NA	NA	NA	NA
SPR53461.1|1194152_1195103_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53462.1|1195201_1195825_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
SPR53463.1|1196004_1198287_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR53464.1|1198441_1201138_-	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR53465.1|1201263_1201752_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR53466.1|1201787_1203650_+	membrane protein	NA	NA	NA	NA	NA
SPR53467.1|1203628_1203838_+	oligopeptide transporter OPT family	NA	NA	NA	NA	NA
SPR53468.1|1204162_1207033_+	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR53469.1|1207078_1208293_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
SPR53470.1|1208522_1209950_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
SPR53471.1|1210047_1211139_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53472.1|1211151_1211910_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR53473.1|1211997_1212900_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53474.1|1212896_1213847_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53475.1|1213976_1214960_-	exported protein	NA	NA	NA	NA	NA
SPR53476.1|1215014_1215737_-	probable short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR53477.1|1216204_1217071_+	partial	NA	NA	NA	NA	NA
SPR53478.1|1217215_1218571_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR53479.1|1218651_1221027_-	transcription accessory protein	NA	NA	NA	NA	NA
SPR53480.1|1221191_1223267_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
SPR53481.1|1223328_1224177_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
SPR53482.1|1224230_1225193_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SPR53483.1|1225180_1225936_+	laccase domain-containing protein	NA	NA	NA	NA	NA
SPR53484.1|1226043_1227681_+	poly-beta-hydroxybutyrate polymerase	NA	NA	NA	NA	NA
SPR53485.1|1227748_1228486_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR53486.1|1228588_1229164_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53487.1|1229336_1229873_+	exported protein	NA	NA	NA	NA	NA
SPR53488.1|1229905_1230220_+	putative exported protein	NA	NA	NA	NA	NA
SPR53489.1|1230235_1231081_+	membrane protein	NA	NA	NA	NA	NA
SPR53490.1|1231119_1232499_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
SPR53491.1|1232576_1233458_+	conserved hypotheticals protein	NA	NA	NA	NA	NA
SPR53492.1|1233556_1234507_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 12
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1354217	1422704	4162738	transposase	Planktothrix_phage(33.33%)	59	NA	NA
SPR53603.1|1354217_1355168_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53604.1|1355269_1355926_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
SPR53605.1|1355936_1356575_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR53606.1|1356938_1357547_-	partial	NA	NA	NA	NA	NA
SPR53607.1|1357554_1357911_+	partial	NA	NA	NA	NA	NA
SPR53608.1|1357992_1358694_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
SPR53609.1|1358694_1359462_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
SPR53610.1|1359458_1360697_-	leucine/isoleucine/valine ABC transporter permease	NA	NA	NA	NA	NA
SPR53611.1|1360696_1361623_-	high-affinity branched-chain amino acid transport system permease protein	NA	NA	NA	NA	NA
SPR53612.1|1361725_1362841_-	leucine/isoleucine/valine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR53613.1|1362856_1363807_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53614.1|1364160_1364742_-	membrane protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
SPR53615.1|1364738_1365572_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
SPR53616.1|1365782_1367096_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
SPR53617.1|1367272_1368154_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR53618.1|1368173_1369025_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR53619.1|1369077_1370166_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
SPR53620.1|1370276_1371404_-	leu/Ile/val-binding protein	NA	NA	NA	NA	NA
SPR53621.1|1371524_1372250_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53622.1|1372348_1373299_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53623.1|1373520_1373898_-	putative membrane protein	NA	NA	NA	NA	NA
SPR53624.1|1374045_1374543_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53625.1|1374539_1375067_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53626.1|1375200_1376016_+	putative exported protein	NA	NA	NA	NA	NA
SPR53627.1|1376028_1377210_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR53628.1|1377257_1378151_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR53629.1|1378277_1378748_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53630.1|1378873_1379701_-	lipoprotein	NA	NA	NA	NA	NA
SPR53631.1|1379729_1380506_-	putative lipoate-protein ligase A	NA	NA	NA	NA	NA
SPR53632.1|1380502_1380778_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53633.1|1380792_1381257_-	acetyltransferase	NA	NA	NA	NA	NA
SPR53634.1|1381268_1381970_-	glutathione transferase	NA	NA	NA	NA	NA
SPR53635.1|1382079_1382580_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
SPR53636.1|1382662_1385293_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53637.1|1385468_1385804_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
SPR53638.1|1385991_1387440_+	CoA-transferase	NA	NA	NA	NA	NA
SPR53639.1|1387497_1387842_+	putative arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
SPR53640.1|1387948_1388488_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR53641.1|1388580_1389531_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53642.1|1390882_1391287_-	membrane protein	NA	NA	NA	NA	NA
SPR53643.1|1392523_1392847_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53644.1|1392849_1393737_-	putative exported protein	NA	NA	NA	NA	NA
SPR53645.1|1393769_1394195_-	universal stress family protein	NA	NA	NA	NA	NA
SPR53646.1|1394266_1394620_-	partial	NA	NA	NA	NA	NA
SPR53647.1|1394859_1395366_-	putative membrane protein	NA	NA	NA	NA	NA
SPR53648.1|1395404_1396736_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53649.1|1396795_1397611_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
SPR53650.1|1397607_1398462_+	pyridoxine kinase	NA	NA	NA	NA	NA
SPR53651.1|1398562_1400482_+	ATPase	NA	NA	NA	NA	NA
SPR53652.1|1405434_1407189_-	alpha amylase	NA	NA	NA	NA	NA
SPR53653.1|1407185_1409306_-	glycosyl hydrolase	NA	NA	NA	NA	NA
SPR53654.1|1409310_1411506_-	14-alpha-glucan-branching protein	NA	NA	NA	NA	NA
SPR53655.1|1411502_1414844_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
SPR53656.1|1417646_1418597_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53657.1|1418662_1418842_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53658.1|1418958_1419714_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53659.1|1419700_1420846_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53660.1|1420899_1421736_-	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA	NA
SPR53661.1|1421753_1422704_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 13
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1526426	1584674	4162738	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
SPR53757.1|1526426_1527377_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53758.1|1527494_1528421_+	putative membrane protein	NA	NA	NA	NA	NA
SPR53759.1|1528486_1529644_+	membrane protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
SPR53760.1|1529624_1530092_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
SPR53761.1|1530239_1531190_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53762.1|1531206_1531641_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53763.1|1531630_1531981_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53764.1|1532177_1533332_+	probable acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR53765.1|1533328_1535446_+	enoyl-CoA hydratase/isomerase family protein phused with 3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR53766.1|1535491_1535929_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53767.1|1535988_1536678_+	membrane protein	NA	NA	NA	NA	NA
SPR53768.1|1536687_1537638_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53769.1|1537736_1538687_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53770.1|1538785_1539748_-	transaldolase B	NA	H6WFR1	Cyanophage	29.2	7.5e-11
SPR53771.1|1539974_1541129_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
SPR53772.1|1541139_1544382_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
SPR53773.1|1544531_1545239_+	partial	NA	NA	NA	NA	NA
SPR53774.1|1545403_1546048_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
SPR53775.1|1546058_1546958_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53776.1|1547005_1548091_-	probable ATP-binding component of ABC transporter	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
SPR53777.1|1548087_1549782_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR53778.1|1549815_1549974_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53779.1|1549960_1550911_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53780.1|1551397_1552423_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
SPR53781.1|1552464_1553526_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
SPR53782.1|1553559_1554396_+	lipoprotein	NA	NA	NA	NA	NA
SPR53783.1|1554405_1554948_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
SPR53784.1|1554961_1556254_-	molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
SPR53785.1|1556250_1556844_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
SPR53786.1|1556996_1558094_+	putative iron sulfur binding protein	NA	NA	NA	NA	NA
SPR53787.1|1558100_1558661_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53788.1|1558657_1559338_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53789.1|1559394_1561452_+	iron-sulfur binding protein	NA	NA	NA	NA	NA
SPR53790.1|1561448_1562078_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53791.1|1562229_1562439_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53792.1|1562453_1565423_+	formate dehydrogenase	NA	NA	NA	NA	NA
SPR53793.1|1565668_1566061_+	formate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR53794.1|1566057_1566291_+	putative lipoprotein	NA	NA	NA	NA	NA
SPR53795.1|1566303_1567461_+	formate dehydrogenase subunit C	NA	NA	NA	NA	NA
SPR53796.1|1567483_1567858_+	exported protein	NA	NA	NA	NA	NA
SPR53797.1|1567891_1569007_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53798.1|1569906_1570611_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
SPR53799.1|1570607_1571426_+	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR53800.1|1571709_1573113_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
SPR53801.1|1573127_1573778_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
SPR53802.1|1573859_1574936_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SPR53803.1|1575122_1576253_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR53804.1|1576423_1578007_+	membrane protein	NA	NA	NA	NA	NA
SPR53805.1|1578010_1578823_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SPR53806.1|1578967_1580062_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR53807.1|1580273_1580903_+	membrane protein	NA	NA	NA	NA	NA
SPR53808.1|1580905_1582573_+	membrane protein	NA	NA	NA	NA	NA
SPR53809.1|1582587_1583244_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
SPR53810.1|1583723_1584674_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 14
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1630356	1688508	4162738	transposase	Streptococcus_virus(11.11%)	53	NA	NA
SPR53861.1|1630356_1631307_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53862.1|1631313_1632426_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
SPR53863.1|1633112_1634315_+	membrane protein	NA	NA	NA	NA	NA
SPR53864.1|1634350_1634497_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53865.1|1634518_1637179_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53866.1|1637191_1640596_+	nuclease/helicase	NA	NA	NA	NA	NA
SPR53867.1|1641263_1643489_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
SPR53868.1|1643535_1643862_+	nucleoid-associated protein	NA	NA	NA	NA	NA
SPR53869.1|1643912_1644521_+	recombination protein RecR	NA	NA	NA	NA	NA
SPR53870.1|1644619_1645570_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53871.1|1645639_1646404_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53872.1|1646400_1646937_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53873.1|1647103_1647955_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
SPR53874.1|1648014_1648641_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53875.1|1648637_1649588_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53876.1|1649686_1650637_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53877.1|1650735_1651857_-	exported protein	NA	NA	NA	NA	NA
SPR53878.1|1651837_1652839_-	aminopeptidase	NA	NA	NA	NA	NA
SPR53879.1|1652944_1654456_-	thiol oxidoreductase	NA	NA	NA	NA	NA
SPR53880.1|1654452_1655757_-	exported protein	NA	NA	NA	NA	NA
SPR53881.1|1655868_1656426_-	membrane protein	NA	NA	NA	NA	NA
SPR53882.1|1656696_1657251_+	chromate reductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
SPR53883.1|1657706_1657922_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53884.1|1658176_1660774_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
SPR53885.1|1660770_1661958_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53886.1|1662226_1662559_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53887.1|1662613_1663228_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
SPR53888.1|1663316_1664438_-	lipoprotein	NA	NA	NA	NA	NA
SPR53889.1|1664455_1665361_-	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR53890.1|1665446_1665845_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR53891.1|1666253_1667204_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53892.1|1667385_1668138_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR53893.1|1668266_1668866_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
SPR53894.1|1668862_1669591_+	glutamine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
SPR53895.1|1669603_1671883_-	guanosine-3'5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
SPR53896.1|1671907_1672111_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR53897.1|1672152_1672785_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
SPR53898.1|1672920_1673838_-	cytochrome C	NA	NA	NA	NA	NA
SPR53899.1|1673834_1674548_-	cytochrome C	NA	NA	NA	NA	NA
SPR53900.1|1674785_1675556_+	putative oxidoreductase	NA	NA	NA	NA	NA
SPR53901.1|1675560_1676160_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
SPR53902.1|1676404_1677895_+	AMP nucleosidase	NA	NA	NA	NA	NA
SPR53903.1|1677953_1678238_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR53904.1|1678234_1678363_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53905.1|1678375_1678531_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53906.1|1678803_1679730_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53907.1|1679866_1680607_+	ribonuclease PH	NA	NA	NA	NA	NA
SPR53908.1|1680773_1682150_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53909.1|1682331_1683237_+	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR53910.1|1683319_1685011_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
SPR53911.1|1684888_1686691_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53912.1|1686817_1687459_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
SPR53913.1|1687557_1688508_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 15
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1696780	1759760	4162738	transposase	Planktothrix_phage(11.11%)	51	NA	NA
SPR53921.1|1696780_1697731_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53922.1|1697829_1698624_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
SPR53923.1|1698628_1700299_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA	NA
SPR53924.1|1700422_1701472_-	iron binding protein	NA	NA	NA	NA	NA
SPR53925.1|1701793_1702570_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
SPR53926.1|1702634_1703537_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53927.1|1703638_1704289_+	major facilitator family protein	NA	NA	NA	NA	NA
SPR53928.1|1704830_1705634_+	25-diketo-D-gluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
SPR53929.1|1706603_1708151_+	partial	NA	NA	NA	NA	NA
SPR53930.1|1708327_1708714_+	translational inhibitor	NA	NA	NA	NA	NA
SPR53931.1|1708849_1710820_+	ATP-dependent DNA helicase	NA	NA	NA	NA	NA
SPR53932.1|1710871_1711825_+	probable LysR-family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
SPR53933.1|1711839_1712766_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53934.1|1712864_1714391_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR53935.1|1714489_1714990_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
SPR53936.1|1715313_1717299_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR53937.1|1717436_1719521_-	hypothetical protein	NA	NA	NA	NA	NA
SPR53938.1|1719547_1720333_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
SPR53939.1|1721188_1721959_+	polysialic acid ABC transporter permease	NA	NA	NA	NA	NA
SPR53940.1|1721970_1722699_+	polysialic acid ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR53941.1|1722740_1723910_+	capsule polysaccharide export inner-membrane protein	NA	NA	NA	NA	NA
SPR53942.1|1723941_1726026_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR53943.1|1726022_1726913_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR53944.1|1726909_1728007_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
SPR53945.1|1728029_1729319_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR53946.1|1729330_1730356_+	capsular polysaccharide biosynthesis protein	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
SPR53947.1|1730352_1732410_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
SPR53948.1|1732423_1733599_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
SPR53949.1|1733680_1734631_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53950.1|1734689_1735463_+	oxidoreductase	NA	NA	NA	NA	NA
SPR53951.1|1735455_1737012_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR53952.1|1737008_1737959_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53953.1|1738057_1739008_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53954.1|1739471_1740359_+	oxidoreductase	NA	NA	NA	NA	NA
SPR53955.1|1740334_1740937_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR53956.1|1741176_1741878_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR53957.1|1741871_1742654_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
SPR53958.1|1742838_1743789_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR53959.1|1743887_1744625_-	membrane protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
SPR53960.1|1744814_1745573_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR53961.1|1745619_1746609_-	exported protein	NA	NA	NA	NA	NA
SPR53962.1|1746786_1747755_-	exported protein	NA	NA	NA	NA	NA
SPR53963.1|1748786_1749239_+	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
SPR53964.1|1749294_1750263_+	regulatory protein	NA	NA	NA	NA	NA
SPR53965.1|1750271_1751213_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53966.1|1751209_1752697_+	von Willebrand factor type A domain protein	NA	NA	NA	NA	NA
SPR53967.1|1752687_1754202_+	hypothetical protein	NA	NA	NA	NA	NA
SPR53968.1|1754198_1755545_+	exported protein	NA	NA	NA	NA	NA
SPR53969.1|1755547_1756582_+	nonspecific acid phosphatase	NA	NA	NA	NA	NA
SPR53970.1|1756631_1758257_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
SPR53971.1|1758809_1759760_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 16
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	1834866	1885379	4162738	transposase,protease,tRNA	Bacillus_phage(16.67%)	43	NA	NA
SPR54047.1|1834866_1835817_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54048.1|1835965_1836304_-	putative exported protein	NA	NA	NA	NA	NA
SPR54049.1|1836361_1836523_-	putative membrane protein	NA	NA	NA	NA	NA
SPR54050.1|1836554_1836755_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR54051.1|1837020_1839594_-	cyanophycin synthetase	NA	NA	NA	NA	NA
SPR54052.1|1839664_1842214_-	cyanophycin synthetase	NA	NA	NA	NA	NA
SPR54053.1|1842478_1842694_+	putative ABC transporter	NA	NA	NA	NA	NA
SPR54054.1|1842995_1844768_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.4	5.7e-57
SPR54055.1|1844764_1845253_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54056.1|1845344_1846475_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54057.1|1846480_1847371_+	exported protein	NA	NA	NA	NA	NA
SPR54058.1|1847409_1848639_+	peptidoglycan-binding protein	NA	NA	NA	NA	NA
SPR54059.1|1848767_1849208_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54060.1|1849318_1850269_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54061.1|1850265_1850739_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR54062.1|1850900_1851839_+	membrane protein	NA	NA	NA	NA	NA
SPR54063.1|1851840_1853049_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
SPR54064.1|1853153_1853660_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SPR54065.1|1853662_1856524_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
SPR54066.1|1856513_1857479_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
SPR54067.1|1857538_1859533_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
SPR54068.1|1859631_1860582_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54069.1|1860578_1860953_-	exported protein	NA	NA	NA	NA	NA
SPR54070.1|1861214_1862423_+	fatty acid desaturase	NA	NA	NA	NA	NA
SPR54071.1|1862419_1864720_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
SPR54072.1|1864772_1867385_-	exported protein	NA	NA	NA	NA	NA
SPR54073.1|1867744_1869652_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
SPR54074.1|1869666_1870563_-	50S ribosomal protein L3 glutamine methyltransferase	NA	NA	NA	NA	NA
SPR54075.1|1870569_1871709_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR54076.1|1871708_1872530_-	2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR54077.1|1872555_1873278_-	N-succinyl-LL-diaminopimelate aminotransferase	NA	NA	NA	NA	NA
SPR54078.1|1874100_1874430_-	exported protein	NA	NA	NA	NA	NA
SPR54079.1|1874812_1876069_+	autotransporter	NA	NA	NA	NA	NA
SPR54080.1|1876143_1876425_+	putative membrane protein	NA	NA	NA	NA	NA
SPR54081.1|1876466_1876787_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54082.1|1877093_1877297_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
SPR54083.1|1877380_1877947_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
SPR54084.1|1878292_1878493_+	cold shock-like protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
SPR54085.1|1878604_1879165_-	hypothetical protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
SPR54086.1|1879361_1880672_+	trigger factor	NA	NA	NA	NA	NA
SPR54087.1|1880674_1881328_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
SPR54088.1|1881432_1882737_+|protease	ATP-dependent Clp protease ATP-binding protein	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
SPR54089.1|1882925_1885379_+|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
>prophage 17
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	2021012	2073213	4162738	transposase	Mycobacterium_phage(25.0%)	51	NA	NA
SPR54223.1|2021012_2021963_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54224.1|2022061_2022469_-	N-acetyltransferase	NA	NA	NA	NA	NA
SPR54225.1|2022615_2023566_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54226.1|2023584_2023932_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54227.1|2023960_2025400_-	transmembrane efflux protein	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
SPR54228.1|2025418_2025814_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54229.1|2025988_2026597_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR54230.1|2026609_2027428_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
SPR54231.1|2027379_2028354_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR54232.1|2028382_2029429_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR54233.1|2029440_2031657_-	exported oxidoreductase subunit	NA	NA	NA	NA	NA
SPR54234.1|2031670_2032129_-	oxidoreductase subunit	NA	NA	NA	NA	NA
SPR54235.1|2032286_2032631_-	exported protein	NA	NA	NA	NA	NA
SPR54236.1|2032787_2033693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR54237.1|2033815_2034793_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54238.1|2034800_2035724_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	50.2	8.0e-79
SPR54239.1|2036859_2037789_+	IS110 family	NA	NA	NA	NA	NA
SPR54240.1|2037931_2039284_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
SPR54241.1|2039458_2039755_+	putative membrane protein	NA	NA	NA	NA	NA
SPR54242.1|2039853_2040804_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54243.1|2041128_2042112_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
SPR54244.1|2042150_2043122_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR54245.1|2043125_2043980_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54246.1|2043998_2044820_+	hydrolase	NA	NA	NA	NA	NA
SPR54247.1|2044851_2045646_+	amidase	NA	NA	NA	NA	NA
SPR54248.1|2046257_2047091_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR54249.1|2047376_2048882_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54250.1|2048923_2049706_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR54251.1|2049775_2050222_-	membrane protein	NA	NA	NA	NA	NA
SPR54252.1|2050218_2051445_-	membrane protein	NA	NA	NA	NA	NA
SPR54253.1|2051437_2051842_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR54254.1|2052001_2052304_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR54255.1|2052300_2053251_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54256.1|2053472_2054423_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54257.1|2054521_2055487_-	exported protein	NA	NA	NA	NA	NA
SPR54258.1|2055624_2056431_-	putative lysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR54259.1|2057054_2058878_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
SPR54260.1|2059235_2060606_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54261.1|2060616_2061813_+	thiolase	NA	NA	NA	NA	NA
SPR54262.1|2061885_2063205_+	acyl-CoA ligase	NA	NA	NA	NA	NA
SPR54263.1|2063201_2064077_+	esterase	NA	NA	NA	NA	NA
SPR54264.1|2064107_2065256_-	fatty-acyl-CoA racemase	NA	NA	NA	NA	NA
SPR54265.1|2065273_2065588_-	ferredoxin	NA	NA	NA	NA	NA
SPR54266.1|2065609_2066332_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR54267.1|2066331_2067144_-	enoyl-CoA hydratase/isomerase-like protein	NA	NA	NA	NA	NA
SPR54268.1|2067154_2067682_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54269.1|2067687_2068944_-	dioxygenase hydroxylase large subunit	NA	NA	NA	NA	NA
SPR54270.1|2069302_2070442_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR54271.1|2070519_2071392_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR54272.1|2071395_2072181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR54273.1|2072262_2073213_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 18
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	2739131	2776554	4162738	transposase,tRNA	Salmonella_phage(33.33%)	39	NA	NA
SPR54868.1|2739131_2740082_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54869.1|2740192_2740375_+	hypothetical protein	NA	NA	NA	NA	NA
SPR54870.1|2740474_2741068_-	lipoprotein	NA	NA	NA	NA	NA
SPR54871.1|2741254_2742346_+	exported protein	NA	NA	NA	NA	NA
SPR54872.1|2742845_2743256_-	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR54873.1|2743314_2743644_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
SPR54874.1|2743661_2746079_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR54875.1|2746091_2747114_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
SPR54876.1|2747188_2747548_-	50s ribosomal protein	NA	NA	NA	NA	NA
SPR54877.1|2747563_2747761_-	50s ribosomal protein l35	NA	NA	NA	NA	NA
SPR54878.1|2748096_2749047_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54879.1|2749241_2749691_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
SPR54880.1|2749687_2750638_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54881.1|2750748_2752197_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR54882.1|2752311_2752557_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54883.1|2752696_2753647_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54884.1|2753891_2754605_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54885.1|2755249_2755888_-	DedA family integral membrane protein	NA	NA	NA	NA	NA
SPR54886.1|2755996_2757031_+	integral membrane protein	NA	NA	NA	NA	NA
SPR54887.1|2757027_2757978_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54888.1|2757995_2758385_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SPR54889.1|2758393_2758918_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
SPR54890.1|2758921_2759191_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54891.1|2759389_2760451_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
SPR54892.1|2760534_2762169_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
SPR54893.1|2762170_2763025_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR54894.1|2763002_2763962_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR54895.1|2763965_2765477_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR54896.1|2765516_2766572_-	partial	NA	NA	NA	NA	NA
SPR54897.1|2766952_2767423_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54898.1|2767458_2768070_-	membrane transport protein	NA	NA	NA	NA	NA
SPR54899.1|2768100_2768724_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54900.1|2768804_2770337_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR54901.1|2770371_2771589_-	membrane protein	NA	NA	NA	NA	NA
SPR54902.1|2771656_2772688_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
SPR54903.1|2772684_2773854_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54904.1|2773847_2774528_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54905.1|2774689_2775532_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR54906.1|2775603_2776554_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 19
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	2841373	2891972	4162738	transposase	Moraxella_phage(16.67%)	39	NA	NA
SPR54961.1|2841373_2842324_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54962.1|2842320_2849982_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
SPR54963.1|2850222_2854269_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
SPR54964.1|2854626_2855163_+	integral membrane protein	NA	NA	NA	NA	NA
SPR54965.1|2855159_2856458_+	membrane permease	NA	NA	NA	NA	NA
SPR54966.1|2856537_2857566_+	exported protein	NA	NA	NA	NA	NA
SPR54967.1|2857826_2858777_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54968.1|2858773_2859724_-|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR54969.1|2860040_2860646_+	fimbrial protein	NA	NA	NA	NA	NA
SPR54970.1|2860699_2862013_-	phenylacetate-coenzyme A ligase	NA	NA	NA	NA	NA
SPR54971.1|2862087_2862558_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR54972.1|2862557_2863346_-	2-(12-epoxy-12-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
SPR54973.1|2863356_2865009_-	oxidoreductase	NA	NA	NA	NA	NA
SPR54974.1|2865096_2866047_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54975.1|2866033_2867197_-	PaaK subunit	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
SPR54976.1|2867208_2867715_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR54977.1|2867711_2868476_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR54978.1|2868491_2868776_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
SPR54979.1|2868840_2869830_-	12-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
SPR54980.1|2870001_2870931_+	phenylacetic acid degradation operon negative regulatory protein	NA	NA	NA	NA	NA
SPR54981.1|2870902_2871589_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
SPR54982.1|2871622_2872168_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
SPR54983.1|2872212_2873478_+	peptidase M48	NA	NA	NA	NA	NA
SPR54984.1|2873474_2874377_+	putative ATP/GTP-binding protein	NA	NA	NA	NA	NA
SPR54985.1|2874674_2875562_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR54986.1|2875558_2876503_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR54987.1|2876597_2878115_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR54988.1|2878156_2879785_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR54989.1|2879892_2880774_+	LysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR54990.1|2881853_2883311_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
SPR54991.1|2883427_2883772_-	partial	NA	NA	NA	NA	NA
SPR54992.1|2883886_2884261_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
SPR54993.1|2884257_2885208_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR54994.1|2885334_2885673_-	nitrogen regulatory protein	NA	NA	NA	NA	NA
SPR54995.1|2885716_2887351_-	NAD synthetase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
SPR54996.1|2887389_2888736_-	putative membrane transport protein	NA	NA	NA	NA	NA
SPR54997.1|2888843_2890265_+	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR54998.1|2890334_2890919_-	hypothetical protein	NA	NA	NA	NA	NA
SPR54999.1|2891021_2891972_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 20
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	2912327	2965086	4162738	transposase,protease	uncultured_Mediterranean_phage(33.33%)	39	NA	NA
SPR55019.1|2912327_2913278_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55020.1|2913376_2914327_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55021.1|2914425_2915376_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55022.1|2915372_2916167_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55023.1|2916198_2916903_-	oxidoreductase	NA	NA	NA	NA	NA
SPR55024.1|2916977_2917778_-	SurF1-family protein	NA	NA	NA	NA	NA
SPR55025.1|2917774_2918182_-	cytochrome ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
SPR55026.1|2918178_2918820_-	cytochrome ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
SPR55027.1|2918812_2920834_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
SPR55028.1|2920870_2921362_-	partial	NA	NA	NA	NA	NA
SPR55029.1|2922073_2923405_+	membrane transport protein	NA	NA	NA	NA	NA
SPR55030.1|2923401_2924352_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55031.1|2924905_2925952_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
SPR55032.1|2926058_2926325_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55033.1|2927032_2927371_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SPR55034.1|2927396_2928122_+	ammonium transporter	NA	NA	NA	NA	NA
SPR55035.1|2928699_2930820_-	autotransporter BapC	NA	NA	NA	NA	NA
SPR55036.1|2931923_2932526_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55037.1|2932622_2933912_+	membrane transport protein	NA	NA	NA	NA	NA
SPR55038.1|2933969_2934701_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
SPR55039.1|2934697_2935501_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
SPR55040.1|2935497_2936586_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR55041.1|2936582_2937512_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR55042.1|2937660_2938806_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR55043.1|2938827_2939778_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55044.1|2940108_2943930_-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
SPR55045.1|2944086_2944755_-	lipoprotein	NA	NA	NA	NA	NA
SPR55046.1|2944759_2946433_-	membrane protein	NA	NA	NA	NA	NA
SPR55047.1|2946451_2947648_-	exported protein	NA	NA	NA	NA	NA
SPR55048.1|2947775_2950091_-|protease	ATP-dependent Clp protease ATP-binding protein	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
SPR55049.1|2950146_2952315_-	penicillin-binding protein	NA	NA	NA	NA	NA
SPR55050.1|2952311_2957492_-	exported protein	NA	NA	NA	NA	NA
SPR55051.1|2957590_2957905_-|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
SPR55052.1|2958132_2958378_+	putative cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
SPR55053.1|2958499_2958991_+	exported protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
SPR55054.1|2959090_2960296_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
SPR55055.1|2960411_2961809_-	putative chloride-channel protein	NA	NA	NA	NA	NA
SPR55056.1|2961925_2962504_-	superoxide dismutase	NA	NA	NA	NA	NA
SPR55057.1|2964135_2965086_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 21
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	2974732	3024518	4162738	transposase,tRNA	Vibrio_phage(20.0%)	47	NA	NA
SPR55069.1|2974732_2975683_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55070.1|2975679_2976231_-	partial	NA	NA	NA	NA	NA
SPR55071.1|2977058_2978018_-	partial	NA	NA	NA	NA	NA
SPR55072.1|2978066_2979179_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR55073.1|2979235_2980186_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55074.1|2980394_2980616_-	lipoprotein	NA	NA	NA	NA	NA
SPR55075.1|2980829_2982236_-	threonine synthase	NA	NA	NA	NA	NA
SPR55076.1|2982232_2983537_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
SPR55077.1|2983533_2984721_-	aminotransferase	NA	NA	NA	NA	NA
SPR55078.1|2984937_2985390_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55079.1|2985392_2985857_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR55080.1|2985936_2987616_+	phosphate starvation protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
SPR55081.1|2987720_2988698_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
SPR55082.1|2988777_2989746_+	exported protein	NA	NA	NA	NA	NA
SPR55083.1|2989766_2991140_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
SPR55084.1|2991136_2991973_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55085.1|2992089_2992545_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SPR55086.1|2992560_2992833_-	30s ribosomal protein s18	NA	NA	NA	NA	NA
SPR55087.1|2992925_2993174_-	primosomal replication protein n	NA	NA	NA	NA	NA
SPR55088.1|2993296_2993677_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
SPR55089.1|2993896_2994694_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55090.1|2994850_2996713_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
SPR55091.1|2996762_2997674_-	geranyltranstransferase	NA	NA	NA	NA	NA
SPR55092.1|2997678_2997945_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SPR55093.1|2998031_2998901_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR55094.1|2999036_3000002_+	exported protein	NA	NA	NA	NA	NA
SPR55095.1|3000145_3001096_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55096.1|3001221_3002232_+	membrane protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
SPR55097.1|3002379_3003531_+	iron-sulfur protein	NA	NA	NA	NA	NA
SPR55098.1|3003614_3004478_-	IS481 family	NA	NA	NA	NA	NA
SPR55099.1|3004673_3006146_-	cation transport protein	NA	NA	NA	NA	NA
SPR55100.1|3006156_3006567_-	putative thioesterase	NA	NA	NA	NA	NA
SPR55101.1|3006630_3007677_-	putative integral membrane protein	NA	NA	NA	NA	NA
SPR55102.1|3007783_3008662_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55103.1|3008675_3009872_-	hydrolase	NA	NA	NA	NA	NA
SPR55104.1|3009948_3011625_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
SPR55105.1|3011621_3012572_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55106.1|3012692_3013589_-	inositol monophosphatase	NA	NA	NA	NA	NA
SPR55107.1|3013746_3014934_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR55108.1|3014879_3015572_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR55109.1|3015866_3018092_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55110.1|3018256_3019345_+	ABC transport protein ATP-binding component	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
SPR55111.1|3019301_3019955_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR55112.1|3020002_3020800_+	lipoprotein	NA	NA	NA	NA	NA
SPR55113.1|3021331_3022282_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55114.1|3022362_3023511_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SPR55115.1|3023567_3024518_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 22
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	3041512	3087948	4162738	transposase	Ostreococcus_lucimarinus_virus(16.67%)	45	NA	NA
SPR55134.1|3041512_3042463_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55135.1|3042566_3043187_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55136.1|3043290_3044031_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR55137.1|3044348_3044972_+	IS3 family	NA	NA	NA	NA	NA
SPR55138.1|3045432_3046212_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55139.1|3046042_3046933_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55140.1|3046945_3047896_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55141.1|3047882_3048923_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55142.1|3048931_3049543_-	partial	NA	NA	NA	NA	NA
SPR55143.1|3049859_3050810_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55144.1|3050806_3051715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55145.1|3051841_3052678_+	probable 3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
SPR55146.1|3053190_3054300_+	outer membrane porin protein	NA	NA	NA	NA	NA
SPR55147.1|3054361_3055312_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55148.1|3055504_3056287_-	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR55149.1|3056300_3057050_-	short chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
SPR55150.1|3057077_3058424_-	membrane transport protein	NA	NA	NA	NA	NA
SPR55151.1|3058449_3059379_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55152.1|3059494_3060400_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55153.1|3060396_3061347_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55154.1|3061466_3062666_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
SPR55155.1|3062738_3063431_-	hypothetical protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
SPR55156.1|3063479_3065906_-	cation-transporting ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
SPR55157.1|3065950_3066901_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55158.1|3067117_3067486_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55159.1|3067772_3068699_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55160.1|3068742_3069753_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SPR55161.1|3069749_3070184_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55162.1|3070416_3071298_+	exported protein	NA	NA	NA	NA	NA
SPR55163.1|3071309_3072098_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
SPR55164.1|3072107_3072890_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR55165.1|3072893_3073985_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55166.1|3074090_3075566_+	acid CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
SPR55167.1|3075707_3076256_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55168.1|3076271_3076733_-	putative AsnC-family transcriptional regulator	NA	NA	NA	NA	NA
SPR55169.1|3076833_3077823_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR55170.1|3078121_3078823_+	riboflavin synthase subunit alpha	NA	NA	NA	NA	NA
SPR55171.1|3078861_3080235_-	amidase	NA	NA	NA	NA	NA
SPR55172.1|3081909_3082779_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55173.1|3082873_3083545_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55174.1|3083534_3084044_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55175.1|3084040_3085261_+	membrane transport protein	NA	NA	NA	NA	NA
SPR55176.1|3085208_3086111_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55177.1|3086299_3086905_+	partial	NA	NA	NA	NA	NA
SPR55178.1|3086997_3087948_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 23
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	3240809	3313568	4162738	transposase,tRNA	Xanthomonas_phage(14.29%)	60	NA	NA
SPR55316.1|3240809_3241760_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55317.1|3241768_3242317_+	lipid A palmitoyltransferase	NA	NA	NA	NA	NA
SPR55318.1|3242313_3242922_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55319.1|3243104_3243563_-	glutamate uptake regulatory protein	NA	NA	NA	NA	NA
SPR55320.1|3243581_3244838_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR55321.1|3244893_3245706_-	oxidoreductase	NA	NA	NA	NA	NA
SPR55322.1|3245820_3246375_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR55323.1|3246384_3247374_-	membrane protein	NA	NA	NA	NA	NA
SPR55324.1|3247553_3248273_-	VOC family protein	NA	NA	NA	NA	NA
SPR55325.1|3248289_3251025_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
SPR55326.1|3251204_3252191_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
SPR55327.1|3252232_3252727_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55328.1|3252838_3253762_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
SPR55329.1|3253990_3255175_-	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR55330.1|3255363_3256590_-	cell division protein FtsA	NA	NA	NA	NA	NA
SPR55331.1|3256594_3257416_-	cell division protein FtsQ	NA	NA	NA	NA	NA
SPR55332.1|3257428_3258379_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SPR55333.1|3258375_3259782_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SPR55334.1|3259778_3260852_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR55335.1|3260848_3262042_-	lipid II flippase FtsW	NA	NA	NA	NA	NA
SPR55336.1|3262038_3263571_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR55337.1|3263567_3264737_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR55338.1|3264726_3267564_-	bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR55339.1|3267560_3269291_-	peptidoglycan synthetase	NA	NA	NA	NA	NA
SPR55340.1|3269287_3269566_-	cell division protein FtsL	NA	NA	NA	NA	NA
SPR55341.1|3269565_3270660_-	S-adenosyl-methyltransferase	NA	NA	NA	NA	NA
SPR55342.1|3270668_3271019_-	cell division protein MraZ	NA	NA	NA	NA	NA
SPR55343.1|3271899_3273708_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
SPR55344.1|3273747_3274812_-	dihydroorotase	NA	NA	NA	NA	NA
SPR55345.1|3274823_3276017_-	hydrolase	NA	NA	NA	NA	NA
SPR55346.1|3276166_3276445_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55347.1|3276773_3277139_-	putative membrane protein	NA	NA	NA	NA	NA
SPR55348.1|3283889_3284351_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SPR55349.1|3284518_3285631_+	hemolysin	NA	NA	NA	NA	NA
SPR55350.1|3285698_3286259_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SPR55351.1|3286282_3286615_-	cytochrome C552 precursor	NA	NA	NA	NA	NA
SPR55352.1|3286598_3288287_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR55353.1|3288406_3289195_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SPR55354.1|3289169_3289742_-	DUF541 domain-containing protein	NA	NA	NA	NA	NA
SPR55355.1|3289902_3290853_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55356.1|3291297_3291609_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55357.1|3291608_3292055_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55358.1|3292301_3293252_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55359.1|3293350_3294301_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55360.1|3294590_3295055_+	putative membrane protein	NA	NA	NA	NA	NA
SPR55361.1|3295069_3296575_+	membrane protein	NA	NA	NA	NA	NA
SPR55362.1|3296831_3298436_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR55363.1|3298563_3299397_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR55364.1|3299445_3299799_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
SPR55365.1|3299837_3300788_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55366.1|3300926_3301679_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
SPR55367.1|3301953_3303642_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
SPR55368.1|3303730_3304921_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55369.1|3304935_3306030_-|tRNA	tRNA CCA-pyrophosphorylase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
SPR55370.1|3306026_3308153_-	putative transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
SPR55371.1|3308165_3308846_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR55372.1|3309081_3310497_+	integral membrane transport protein	NA	NA	NA	NA	NA
SPR55373.1|3310498_3311518_+	aminohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
SPR55374.1|3311581_3312553_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR55375.1|3312617_3313568_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 24
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	3333267	3374432	4162738	transposase,protease	Erwinia_phage(50.0%)	38	NA	NA
SPR55396.1|3333267_3333807_+|protease	ATP-dependent protease subunit HsIV	protease	NA	NA	NA	NA
SPR55397.1|3333828_3335163_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
SPR55398.1|3335176_3335482_-	RND transporter	NA	NA	NA	NA	NA
SPR55399.1|3335906_3336488_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
SPR55400.1|3336569_3337520_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55401.1|3337736_3339311_+	phospholipase D	NA	NA	NA	NA	NA
SPR55402.1|3339317_3340427_-	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
SPR55403.1|3340438_3341119_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
SPR55404.1|3341140_3341896_-	molybdate-binding periplasmic protein precursor	NA	NA	NA	NA	NA
SPR55405.1|3342031_3342913_-	putative hydrolase	NA	NA	NA	NA	NA
SPR55406.1|3343003_3343585_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55407.1|3343677_3343800_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55408.1|3343845_3344145_-	exported protein	NA	NA	NA	NA	NA
SPR55409.1|3344296_3344776_-	membrane protein	NA	NA	NA	NA	NA
SPR55410.1|3344791_3345157_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55411.1|3345495_3346932_-	probable TonB-dependent receptor	NA	NA	NA	NA	NA
SPR55412.1|3346928_3347357_-	regulatory protein	NA	NA	NA	NA	NA
SPR55413.1|3347447_3348398_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55414.1|3348479_3348851_-	partial	NA	NA	NA	NA	NA
SPR55415.1|3348925_3349699_-	putative molybdate-binding periplasmic protein	NA	NA	NA	NA	NA
SPR55416.1|3349831_3350842_-	putative exported protein	NA	NA	NA	NA	NA
SPR55417.1|3350993_3352649_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR55418.1|3352703_3353045_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55419.1|3353058_3354498_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55420.1|3354630_3355446_-	probable MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR55421.1|3355639_3356590_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55422.1|3356586_3357549_-	MFS transporter	NA	NA	NA	NA	NA
SPR55423.1|3357983_3358925_+	putative membrane protein	NA	NA	NA	NA	NA
SPR55424.1|3359151_3359892_+	putative TetR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR55425.1|3359977_3360928_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55426.1|3361314_3361800_+	partial	NA	NA	NA	NA	NA
SPR55427.1|3361815_3362319_+	partial	NA	NA	NA	NA	NA
SPR55428.1|3362369_3363941_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR55429.1|3364273_3366127_+	autotransporter	NA	NA	NA	NA	NA
SPR55430.1|3366171_3368736_+	autotransporter	NA	NA	NA	NA	NA
SPR55431.1|3369154_3370105_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55432.1|3371254_3372685_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55433.1|3373481_3374432_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 25
LS398605	Bordetella pertussis strain VS401 genome assembly, chromosome: I	4162738	3532860	3642338	4162738	transposase,integrase,tRNA	Acinetobacter_phage(21.05%)	104	3585370:3585387	3620171:3620188
SPR55569.1|3532860_3533811_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55570.1|3533909_3535043_-	partial	NA	NA	NA	NA	NA
SPR55571.1|3535567_3536557_+	partial	NA	NA	NA	NA	NA
SPR55572.1|3536553_3536712_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55573.1|3536732_3537521_-	indole-3-glycerol phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
SPR55574.1|3537517_3538549_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
SPR55575.1|3538567_3539131_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
SPR55576.1|3539186_3540707_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
SPR55577.1|3540970_3541675_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SPR55578.1|3541682_3542411_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SPR55579.1|3542525_3542900_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
SPR55580.1|3542942_3544232_+	membrane-bound transglycosylase	NA	NA	NA	NA	NA
SPR55581.1|3544228_3545398_+	ubiquinone biosynthesis hydroxylase family protein	NA	NA	NA	NA	NA
SPR55582.1|3545424_3546234_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR55583.1|3546293_3547229_+	2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
SPR55584.1|3547241_3548192_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55585.1|3548290_3549253_-|tRNA	tRNA 2-thiocytidine biosynthesis protein	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
SPR55586.1|3549284_3549644_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
SPR55587.1|3549768_3550671_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
SPR55588.1|3550672_3552439_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55589.1|3552479_3553256_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR55590.1|3553552_3554620_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55591.1|3554579_3555530_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55592.1|3556381_3556702_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR55593.1|3556774_3557656_+	ATP synthase A chain	NA	NA	NA	NA	NA
SPR55594.1|3557772_3558015_+	ATP synthase c chain	NA	NA	NA	NA	NA
SPR55595.1|3558152_3558623_+	ATP synthase B chain	NA	NA	NA	NA	NA
SPR55596.1|3558635_3559175_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SPR55597.1|3559209_3560751_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR55598.1|3560849_3561755_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
SPR55599.1|3561797_3563198_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR55600.1|3563207_3563630_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
SPR55601.1|3563812_3564697_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55602.1|3564772_3565849_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR55603.1|3566155_3568258_+	primosomal protein N'	NA	NA	NA	NA	NA
SPR55604.1|3568300_3570370_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
SPR55605.1|3570468_3571419_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55606.1|3571547_3572681_-	peptidase	NA	NA	NA	NA	NA
SPR55607.1|3572724_3573630_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55608.1|3573632_3575333_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
SPR55609.1|3575329_3576250_-	binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR55610.1|3576257_3577235_-	putative binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR55611.1|3577293_3578253_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
SPR55612.1|3578376_3579297_-	partial	NA	NA	NA	NA	NA
SPR55613.1|3580302_3580539_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55614.1|3580665_3581529_-	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
SPR55615.1|3581617_3582439_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR55616.1|3582518_3583256_-	putative enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR55617.1|3583252_3584224_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55618.1|3584397_3585021_+	TetR family transcriptional repressor	NA	NA	NA	NA	NA
SPR55619.1|3585065_3586214_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
3585370:3585387	attL	CCGACGACCAGCGCCAGC	NA	NA	NA	NA
SPR55620.1|3586197_3586953_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55621.1|3587634_3588456_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR55622.1|3588537_3589488_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55623.1|3589828_3590779_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
SPR55624.1|3590877_3591828_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55625.1|3592124_3592622_+	blue copper protein	NA	NA	NA	NA	NA
SPR55626.1|3592664_3594440_+	copper resitance protein	NA	NA	NA	NA	NA
SPR55627.1|3594447_3595314_+	copper resistance protein	NA	NA	NA	NA	NA
SPR55628.1|3595320_3596046_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR55629.1|3596620_3597388_+	hypothetical protein	NA	NA	NA	NA	NA
SPR55630.1|3597224_3597995_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SPR55631.1|3598308_3598899_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR55632.1|3598932_3600261_-	amidase	NA	NA	NA	NA	NA
SPR55633.1|3600335_3601481_-	binding-protein-dependent transport protein	NA	NA	NA	NA	NA
SPR55634.1|3601592_3602591_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR55635.1|3602556_3602988_+	membrane protein	NA	NA	NA	NA	NA
SPR55636.1|3603122_3604031_+	MFS transporter	NA	NA	NA	NA	NA
SPR55637.1|3604504_3605389_+	membrane protein	NA	NA	NA	NA	NA
SPR55638.1|3605385_3606591_-	phospholipase	NA	NA	NA	NA	NA
SPR55639.1|3606587_3607448_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
SPR55640.1|3607560_3609351_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
SPR55641.1|3609391_3610042_-	putative membrane protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
SPR55642.1|3610057_3610366_-	hypothetical protein	NA	NA	NA	NA	NA
SPR55643.1|3610531_3611818_-	membrane protein	NA	NA	NA	NA	NA
SPR55644.1|3611944_3613195_-	partial	NA	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
SPR55645.1|3613251_3614202_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55646.1|3614300_3615251_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55647.1|3615332_3617021_-	partial	NA	NA	NA	NA	NA
SPR55648.1|3617202_3618417_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SPR55649.1|3618522_3619512_+	conserved hypothetical protein	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
SPR55650.1|3619508_3620117_+	probable hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
SPR55651.1|3620129_3620759_+	exported protein	NA	NA	NA	NA	NA
3620171:3620188	attR	GCTGGCGCTGGTCGTCGG	NA	NA	NA	NA
SPR55652.1|3620755_3621376_+	exported protein	NA	NA	NA	NA	NA
SPR55653.1|3621407_3622199_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
SPR55654.1|3622552_3622774_+	partial	NA	NA	NA	NA	NA
SPR55655.1|3623041_3623506_+	nitrogen regulatory IIA protein	NA	NA	NA	NA	NA
SPR55656.1|3623524_3624451_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
SPR55657.1|3624504_3625791_-	cytochrome C	NA	NA	NA	NA	NA
SPR55658.1|3625839_3626706_-	cytochrome C	NA	NA	NA	NA	NA
SPR55659.1|3626721_3627594_+	conserved hypothetical protein	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
SPR55660.1|3627590_3628541_+	lipoprotein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
SPR55661.1|3628639_3629590_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR55662.1|3630051_3630471_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR55663.1|3630457_3632839_-	dehydrogenase/oxidase	NA	NA	NA	NA	NA
SPR55664.1|3632831_3634208_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
SPR55665.1|3634223_3635219_-	45-dihydroxyphthalate decarboxylase	NA	NA	NA	NA	NA
SPR55666.1|3635237_3636230_-	exported protein	NA	NA	NA	NA	NA
SPR55667.1|3636470_3637031_-	probable flavoprotein	NA	NA	NA	NA	NA
SPR55668.1|3637035_3637362_-	glutaredoxin	NA	NA	NA	NA	NA
SPR55669.1|3637398_3638211_-	release factor glutamine methyltransferase	NA	NA	NA	NA	NA
SPR55670.1|3638221_3639304_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
SPR55671.1|3639390_3640665_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
SPR55672.1|3641387_3642338_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
