The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	0	60522	4160618	tRNA,transposase	Natrialba_phage(12.5%)	56	NA	NA
SPR48580.1|0_1920_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein	tRNA	NA	NA	NA	NA
SPR48581.1|1916_2609_+	glucose inhibited division protein B	NA	NA	NA	NA	NA
SPR48582.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
SPR48583.1|3409_4171_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
SPR48584.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
SPR48585.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
SPR48586.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
SPR48587.1|8249_8531_+	preprotein translocase SecE subunit	NA	NA	NA	NA	NA
SPR48588.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
SPR48589.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
SPR48590.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
SPR48591.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
SPR48592.1|11160_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SPR48593.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
SPR48594.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
SPR48595.1|20126_20588_-	lipoprotein	NA	NA	NA	NA	NA
SPR48596.1|20876_21947_+	membrane protein	NA	NA	NA	NA	NA
SPR48597.1|22269_24351_-	histidine kinase	NA	NA	NA	NA	NA
SPR48598.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
SPR48599.1|25685_26201_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR48600.1|26575_27286_+	two component system response regulator	NA	NA	NA	NA	NA
SPR48601.1|27282_28233_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48602.1|28674_29103_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48603.1|29141_30353_-	thiolase	NA	NA	NA	NA	NA
SPR48604.1|30364_30862_-	MaoC family protein	NA	NA	NA	NA	NA
SPR48605.1|31069_32005_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR48606.1|32178_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR48607.1|33048_34470_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48608.1|34625_35552_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48609.1|35650_36601_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48610.1|36597_37788_-	MFS transporter	NA	NA	NA	NA	NA
SPR48611.1|37974_38949_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR48612.1|38950_41089_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR48613.1|41085_41625_+	D-glycero-beta-D-manno-heptose 17-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
SPR48614.1|41628_42357_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPR48615.1|42343_43237_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48616.1|43307_43703_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
SPR48617.1|43712_44243_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
SPR48618.1|44688_45639_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48619.1|46249_46774_+	exported protein	NA	NA	NA	NA	NA
SPR48620.1|46745_46982_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR48621.1|47109_48003_+	membrane protein	NA	NA	NA	NA	NA
SPR48622.1|48006_48456_-	partial	NA	NA	NA	NA	NA
SPR48623.1|49172_50420_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
SPR48624.1|50416_51031_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48625.1|51166_52117_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48626.1|52215_53166_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48627.1|53253_54465_+	muropeptide transporter	NA	NA	NA	NA	NA
SPR48628.1|54576_55302_+	partial	NA	NA	NA	NA	NA
SPR48629.1|55324_55639_+	outer membrane porin protein precursor	NA	NA	NA	NA	NA
SPR48630.1|55696_56431_-	aspartate/glutamate racemase	NA	NA	NA	NA	NA
SPR48631.1|56436_57027_-	glutamate/aspartate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
SPR48632.1|57051_57741_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR48633.1|57737_58499_-	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
SPR48634.1|58578_59478_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR48635.1|59571_60522_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 2
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	71159	125196	4160618	tRNA,transposase	Planktothrix_phage(20.0%)	54	NA	NA
SPR48645.1|71159_72110_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48646.1|72215_72518_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
SPR48647.1|73710_75618_+	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
SPR48648.1|75779_76400_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR48649.1|76431_77013_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
SPR48650.1|77101_77353_-	exported protein	NA	NA	NA	NA	NA
SPR48651.1|77354_78197_-	membrane protein	NA	NA	NA	NA	NA
SPR48652.1|78302_79712_+	signal recognition particle protein	NA	NA	NA	NA	NA
SPR48653.1|79708_80659_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48654.1|80787_81678_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
SPR48655.1|81674_83549_-	lipopolysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
SPR48656.1|84896_85601_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
SPR48657.1|85597_86656_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
SPR48658.1|86965_87559_-	sugar transferase	NA	NA	NA	NA	NA
SPR48659.1|87555_88743_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR48660.1|88805_90065_-	glycosyl transferase family protein	NA	NA	NA	NA	NA
SPR48661.1|90088_91177_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
SPR48662.1|91184_92285_-	lipopolysaccharide biosynthesis protein	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
SPR48663.1|92288_92864_-	probable acetyltransferase	NA	NA	NA	NA	NA
SPR48664.1|92867_93920_-	probable oxidoreductase	NA	NA	NA	NA	NA
SPR48665.1|94050_95058_+	heptosyltransferase	NA	NA	NA	NA	NA
SPR48666.1|95059_96346_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA	NA
SPR48667.1|96362_96518_-	exported protein	NA	NA	NA	NA	NA
SPR48668.1|96542_97346_-	pantothenate kinase	NA	NA	NA	NA	NA
SPR48669.1|97342_98185_-	biotin--protein ligase	NA	NA	NA	NA	NA
SPR48670.1|98283_99414_+	integral membrane protein	NA	NA	NA	NA	NA
SPR48671.1|99413_100253_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
SPR48672.1|100406_100631_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48673.1|101191_101788_+	exported protein	NA	NA	NA	NA	NA
SPR48674.1|101817_102471_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48675.1|102681_103860_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
SPR48676.1|103940_104807_+	cytochrome c550	NA	NA	NA	NA	NA
SPR48677.1|104882_105158_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48678.1|105165_105828_+	octanoyltransferase	NA	NA	NA	NA	NA
SPR48679.1|105889_106891_+	lipoyl synthase	NA	NA	NA	NA	NA
SPR48680.1|106905_107454_-	dTDP-4-dehydrorhamnose 35-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
SPR48681.1|107511_108408_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
SPR48682.1|108404_109466_-	dTDP-glucose 46-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
SPR48683.1|109501_110452_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48684.1|110550_111090_-	LysE family translocator	NA	NA	NA	NA	NA
SPR48685.1|111351_112545_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
SPR48686.1|112626_113256_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
SPR48687.1|113317_114001_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
SPR48688.1|114010_115693_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR48689.1|115980_116328_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48690.1|116418_116736_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48691.1|117105_118035_+	IS110 family	NA	NA	NA	NA	NA
SPR48692.1|118110_118911_-	inner membrane component of binding-protein-dependent transport system	NA	NA	NA	NA	NA
SPR48693.1|118907_119783_-	inner membrane component of binding-protein-dependent transport system	NA	NA	NA	NA	NA
SPR48694.1|119793_121086_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR48695.1|121128_122169_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
SPR48696.1|122274_123096_-	3'5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA	NA	NA	NA	NA
SPR48697.1|123196_124147_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48698.1|124245_125196_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 3
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	168015	211794	4160618	tRNA,transposase	Planktothrix_phage(14.29%)	39	NA	NA
SPR48735.1|168015_168966_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48736.1|169152_170403_+	partial	NA	G9BWD6	Planktothrix_phage	33.7	5.1e-20
SPR48737.1|170409_171312_-	membrane protein	NA	NA	NA	NA	NA
SPR48738.1|171289_171919_-	LemA family protein	NA	NA	NA	NA	NA
SPR48739.1|172201_173632_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
SPR48740.1|173665_174295_+	LysE family efflux protein	NA	NA	NA	NA	NA
SPR48741.1|174343_175951_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
SPR48742.1|175987_176659_+	exported protein	NA	NA	NA	NA	NA
SPR48743.1|176740_177217_-	bacterioferritin	NA	NA	NA	NA	NA
SPR48744.1|177423_178374_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48745.1|178370_178844_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR48746.1|179489_180017_+	lipoprotein	NA	NA	NA	NA	NA
SPR48747.1|180108_180924_+	lipoprotein	NA	NA	NA	NA	NA
SPR48748.1|180984_181719_+	sulfurtransferase	NA	NA	NA	NA	NA
SPR48749.1|181756_183835_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
SPR48750.1|184084_184357_-	exported protein	NA	NA	NA	NA	NA
SPR48751.1|184458_185544_+	iron sulfur binding protein	NA	NA	NA	NA	NA
SPR48752.1|185547_187452_+	exported protein	NA	NA	NA	NA	NA
SPR48753.1|187448_191123_+	exported protein	NA	NA	NA	NA	NA
SPR48754.1|191183_191747_+	deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
SPR48755.1|191754_192177_-	conseved hypothetical protein	NA	NA	NA	NA	NA
SPR48756.1|192204_192624_-	lyase	NA	NA	NA	NA	NA
SPR48757.1|192652_193000_-	partial	NA	NA	NA	NA	NA
SPR48758.1|193273_193723_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48759.1|193877_196148_+	Orn/Arg/Lys decarboxylase	NA	NA	NA	NA	NA
SPR48760.1|196223_197429_+	exported protein	NA	NA	NA	NA	NA
SPR48761.1|197527_198478_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48762.1|198576_199527_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48763.1|199629_200265_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
SPR48764.1|200261_201155_+	metal transporter	NA	NA	NA	NA	NA
SPR48765.1|201549_202650_+	glycine cleavage system aminomethyltransferase	NA	NA	NA	NA	NA
SPR48766.1|202731_203106_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
SPR48767.1|203165_206030_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
SPR48768.1|206174_206915_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48769.1|206984_208196_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48770.1|208227_209193_+	exported protein	NA	NA	NA	NA	NA
SPR48771.1|209210_209708_+	partial	NA	NA	NA	NA	NA
SPR48772.1|209806_210757_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48773.1|210843_211794_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
>prophage 4
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	220873	271732	4160618	protease,tRNA,transposase	uncultured_Caudovirales_phage(28.57%)	42	NA	NA
SPR48785.1|220873_223669_-|protease	autotransporter subtilisin-like protease	protease	NA	NA	NA	NA
SPR48786.1|224262_227106_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
SPR48787.1|227276_227996_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
SPR48788.1|228034_228583_-	acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
SPR48789.1|228737_229637_+	virginiamycin B lyase	NA	NA	NA	NA	NA
SPR48790.1|229661_230612_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48791.1|230830_231526_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48792.1|231542_232955_+	oxidoreductase	NA	NA	NA	NA	NA
SPR48793.1|233067_234498_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR48794.1|234539_236453_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
SPR48795.1|236771_237338_+	exported protein	NA	NA	NA	NA	NA
SPR48796.1|237479_238430_+	restriction endonuclease	NA	NA	NA	NA	NA
SPR48797.1|238544_239495_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48798.1|239581_240532_+|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR48799.1|240528_241479_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48800.1|241577_242375_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR48801.1|242480_243197_-	MBL fold hydrolase	NA	NA	NA	NA	NA
SPR48802.1|243324_243735_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
SPR48803.1|243984_244740_+	partial	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
SPR48804.1|244756_245470_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48805.1|245543_246587_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR48806.1|246757_248860_+	membrane protein	NA	NA	NA	NA	NA
SPR48807.1|249413_250244_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48808.1|250270_251227_+	putative exported protein	NA	NA	NA	NA	NA
SPR48809.1|251245_251737_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SPR48810.1|251733_253089_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
SPR48811.1|253089_253788_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48812.1|253784_254486_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48813.1|254738_255788_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
SPR48814.1|255893_256835_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR48815.1|256831_258721_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
SPR48816.1|258807_259446_+	putative membrane protein	NA	NA	NA	NA	NA
SPR48817.1|259588_260833_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
SPR48818.1|260904_261441_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48819.1|261592_262984_+	fumarate hydratase	NA	NA	NA	NA	NA
SPR48820.1|263000_263912_-	membrane protein	NA	NA	NA	NA	NA
SPR48821.1|264116_265100_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
SPR48822.1|265164_266064_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48823.1|266170_267925_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR48824.1|267932_269057_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48825.1|269070_270051_-	exported protein	NA	NA	NA	NA	NA
SPR48826.1|270781_271732_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 5
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	282348	338372	4160618	protease,tRNA,transposase	Streptococcus_phage(40.0%)	57	NA	NA
SPR48837.1|282348_283299_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48838.1|283576_283738_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48839.1|284404_284854_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
SPR48840.1|284863_285475_-	stringent starvation protein A	NA	NA	NA	NA	NA
SPR48841.1|285633_286482_-	cytochrome C1	NA	NA	NA	NA	NA
SPR48842.1|286507_287890_-	cytochrome B	NA	NA	NA	NA	NA
SPR48843.1|287954_288596_-	ubiquinol-cytochrome C reductase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR48844.1|288735_289194_+	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
SPR48845.1|289218_289995_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48846.1|290015_291185_+|protease	protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
SPR48847.1|291181_292132_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48848.1|292230_293184_-	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
SPR48849.1|293488_294298_+	putative IclR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR48850.1|294398_295751_+	partial	NA	NA	NA	NA	NA
SPR48851.1|296028_296673_+	Hypothetical protein	NA	NA	NA	NA	NA
SPR48852.1|296669_297890_+	putative dehydratase/racemase	NA	NA	NA	NA	NA
SPR48853.1|297912_298908_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR48854.1|298980_300186_-	CoA transferase	NA	NA	NA	NA	NA
SPR48855.1|300182_300431_-	glutaredoxin family protein	NA	NA	NA	NA	NA
SPR48856.1|300427_301312_-	reductase	NA	NA	NA	NA	NA
SPR48857.1|301481_302432_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48858.1|302428_303001_-	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
SPR48859.1|302997_303936_-	tetrapyrrole methylase	NA	NA	NA	NA	NA
SPR48860.1|304237_304537_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48861.1|304536_305139_+	probable phosphosugar isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
SPR48862.1|305138_305879_+	phospholipid-binding protein	NA	NA	NA	NA	NA
SPR48863.1|305875_306367_+	putative thioredoxin	NA	NA	NA	NA	NA
SPR48864.1|306507_307296_-	exported protein	NA	NA	NA	NA	NA
SPR48865.1|307557_308460_+	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR48866.1|308459_309206_+	hydrolase	NA	NA	NA	NA	NA
SPR48867.1|309255_309831_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
SPR48868.1|310043_311537_+	sodium:sulfate symporter	NA	NA	NA	NA	NA
SPR48869.1|311547_312603_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR48870.1|312628_313765_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR48871.1|313761_315714_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
SPR48872.1|315727_316291_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
SPR48873.1|316277_317162_-	cell shape-determining protein MreC	NA	NA	NA	NA	NA
SPR48874.1|317250_318294_-	rod shape-determining protein	NA	NA	NA	NA	NA
SPR48875.1|318524_318833_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR48876.1|318835_320374_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR48877.1|320376_321831_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR48878.1|321944_322619_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR48879.1|322756_323545_+	endonuclease	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
SPR48880.1|323967_325311_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR48881.1|325347_325986_-	membrane protein	NA	NA	NA	NA	NA
SPR48882.1|326173_326953_+	partial	NA	NA	NA	NA	NA
SPR48883.1|327034_327985_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48884.1|327981_328905_-	exported protein	NA	NA	NA	NA	NA
SPR48885.1|329162_329903_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR48886.1|330117_331128_-	CDP-6-deoxy-delta-34-glucoseen reductase	NA	NA	NA	NA	NA
SPR48887.1|331146_331626_-	hypothetical protein	NA	NA	NA	NA	NA
SPR48888.1|331650_333111_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR48889.1|333155_333887_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48890.1|334006_335515_-	membrane protein	NA	NA	NA	NA	NA
SPR48891.1|335745_336489_+	putative membrane protein	NA	NA	NA	NA	NA
SPR48892.1|336665_337310_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48893.1|337421_338372_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 6
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	361955	419595	4160618	transposase	Paramecium_bursaria_Chlorella_virus(16.67%)	55	NA	NA
SPR48921.1|361955_362906_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48922.1|363028_363757_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
SPR48923.1|363853_365032_+	membrane protein	NA	NA	NA	NA	NA
SPR48924.1|365028_365862_+	bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
SPR48925.1|365898_366639_-	acyltransferase	NA	NA	NA	NA	NA
SPR48926.1|366758_367934_-	dihydroorotase	NA	NA	NA	NA	NA
SPR48927.1|367930_368884_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
SPR48928.1|368897_369299_-	Holliday junction resolvase	NA	NA	NA	NA	NA
SPR48929.1|369291_369897_-	DUF179 domain-containing protein	NA	NA	NA	NA	NA
SPR48930.1|370265_371114_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
SPR48931.1|371110_371764_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
SPR48932.1|371780_373064_+	glutamate-1-semialdehyde 21-aminomutase	NA	NA	NA	NA	NA
SPR48933.1|373303_374929_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48934.1|375022_375424_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48935.1|375448_375883_-	probable 4-hydroxybenzoyl CoA thioesterase	NA	NA	NA	NA	NA
SPR48936.1|375884_377534_-	acid-coenzyme A ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
SPR48937.1|377574_378744_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR48938.1|378746_379610_-	hydratase/isomerase	NA	NA	NA	NA	NA
SPR48939.1|379631_380087_-	partial	NA	NA	NA	NA	NA
SPR48940.1|380421_382233_-	partial	NA	NA	NA	NA	NA
SPR48941.1|382973_383678_-	high-affinity branched-chain amino acid transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
SPR48942.1|383671_384466_-	putative branched-chain amino acid transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
SPR48943.1|384462_385428_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR48944.1|385431_386352_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR48945.1|386448_387612_-	putative ABC transporter substrate binding protein	NA	NA	NA	NA	NA
SPR48946.1|387834_388725_+	esterase	NA	NA	NA	NA	NA
SPR48947.1|388728_389232_+	MarR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR48948.1|389274_390273_+	hypothetical protein	NA	NA	NA	NA	NA
SPR48949.1|390269_391220_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48950.1|391787_392738_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48951.1|392797_393358_+	5'(3')-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
SPR48952.1|393487_394384_+	flagellar protein FlgA	NA	NA	NA	NA	NA
SPR48953.1|394380_394827_+	flagellar protein FlgA	NA	NA	NA	NA	NA
SPR48954.1|394860_395742_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48955.1|395855_397058_+	transporter	NA	NA	NA	NA	NA
SPR48956.1|397186_399046_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR48957.1|399123_399933_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR48958.1|400003_401005_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
SPR48959.1|401036_401897_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR48960.1|402096_403101_+	acetyl esterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
SPR48961.1|403097_404684_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR48962.1|404692_405619_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
SPR48963.1|405641_406268_+	putative regulatory protein	NA	NA	NA	NA	NA
SPR48964.1|406366_407317_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48965.1|407415_408399_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR48966.1|408325_409027_-	putative exported protein	NA	NA	NA	NA	NA
SPR48967.1|409075_409846_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR48968.1|409842_411021_-	CoA transferase	NA	NA	NA	NA	NA
SPR48969.1|411188_412895_-	thiamine pyrophosphate enzyme	NA	NA	NA	NA	NA
SPR48970.1|412891_413788_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR48971.1|413828_415430_-	sulfurtransferase	NA	NA	NA	NA	NA
SPR48972.1|415467_416454_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR48973.1|416528_417128_-	Hypothetical protein	NA	NA	NA	NA	NA
SPR48974.1|417588_418569_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR48975.1|418644_419595_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 7
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	643046	757495	4160618	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	115	NA	NA
SPR49183.1|643046_643997_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49184.1|644095_644896_-	inner membrane protein	NA	NA	NA	NA	NA
SPR49185.1|644957_645341_+	thioredoxin	NA	NA	NA	NA	NA
SPR49186.1|645352_646786_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
SPR49187.1|646992_647322_-	putative conserved inner membrane protein	NA	NA	NA	NA	NA
SPR49188.1|647324_648074_-	inner membrane protein	NA	NA	NA	NA	NA
SPR49189.1|648256_649177_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR49190.1|649223_649436_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
SPR49191.1|649458_649881_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49192.1|649897_650998_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49193.1|651094_652612_-	exported protein	NA	NA	NA	NA	NA
SPR49194.1|652687_653527_+	putative UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
SPR49195.1|653548_654421_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR49196.1|654511_655606_-	outer membrane porin protein OmpQ	NA	NA	NA	NA	NA
SPR49197.1|655899_656850_-	IS481 family	NA	NA	NA	NA	NA
SPR49198.1|656978_657866_+	IS481 family	NA	NA	NA	NA	NA
SPR49199.1|657949_658309_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49200.1|658690_659728_-	inner membrane protein	NA	NA	NA	NA	NA
SPR49201.1|660044_661385_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
SPR49202.1|661394_661847_-	inner membrane protein	NA	NA	NA	NA	NA
SPR49203.1|661943_663125_+	monooxygenase	NA	NA	NA	NA	NA
SPR49204.1|663190_664216_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49205.1|664256_664496_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR49206.1|664565_666155_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
SPR49207.1|666154_666703_+	Crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
SPR49208.1|666783_667356_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR49209.1|667374_668286_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49210.1|668359_669328_-	serine/threonine dehydratase	NA	NA	NA	NA	NA
SPR49211.1|669450_670524_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
SPR49212.1|670528_672349_-	ATP-dependent DNA helicase	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
SPR49213.1|672425_673376_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49214.1|673933_674584_+	carbonic anhydrase	NA	NA	NA	NA	NA
SPR49215.1|674605_676024_-	amidase	NA	NA	NA	NA	NA
SPR49216.1|676093_676834_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR49217.1|676847_677576_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR49218.1|677586_678468_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR49219.1|678484_679192_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
SPR49220.1|679194_679953_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
SPR49221.1|680162_681905_+	sulfite reductase	NA	NA	NA	NA	NA
SPR49222.1|681897_682422_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49223.1|682461_683256_-	exported protein	NA	NA	NA	NA	NA
SPR49224.1|683423_684497_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49225.1|684595_685546_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49226.1|685797_686004_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49227.1|686075_687170_-	phage repressor protein	NA	NA	NA	NA	NA
SPR49228.1|687479_688178_-	phage-related membrane protein	NA	NA	NA	NA	NA
SPR49229.1|688431_689382_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49230.1|690057_690507_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
SPR49231.1|690493_691771_+|terminase	phage terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
SPR49232.1|691773_693192_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
SPR49233.1|693163_694276_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
SPR49234.1|694281_694524_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
SPR49235.1|694646_695249_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
SPR49236.1|695677_695794_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49237.1|695818_696628_-	partial	NA	NA	NA	NA	NA
SPR49238.1|696726_697677_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49239.1|697778_698342_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	70.4	2.0e-64
SPR49240.1|698351_698603_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49241.1|698665_699148_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
SPR49242.1|699149_699350_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49243.1|699349_699745_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
SPR49244.1|699741_700140_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
SPR49245.1|700136_700559_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49246.1|700602_700749_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49247.1|701498_701840_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	35.2	1.2e-08
SPR49248.1|701849_702179_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
SPR49249.1|702208_702487_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.5e-14
SPR49250.1|702512_705125_+|tail	phage tail protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
SPR49251.1|705561_706095_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
SPR49252.1|706091_706481_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
SPR49253.1|706473_710430_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
SPR49254.1|710473_710851_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49255.1|710915_711029_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49256.1|711332_712145_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49257.1|712370_712922_+	phage lysozyme	NA	NA	NA	NA	NA
SPR49258.1|713433_713715_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49259.1|714264_714936_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
SPR49260.1|715291_715978_-	two component system response regulator	NA	NA	NA	NA	NA
SPR49261.1|715958_716531_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR49262.1|716596_718327_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
SPR49263.1|718379_718808_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49264.1|718810_719491_+	protein TolQ	NA	NA	NA	NA	NA
SPR49265.1|719490_719949_+	protein TolR	NA	NA	NA	NA	NA
SPR49266.1|719985_720960_+	proline-rich inner membrane protein	NA	NA	NA	NA	NA
SPR49267.1|720976_722293_+	translocation protein TolB	NA	NA	NA	NA	NA
SPR49268.1|722324_722822_+	putative peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
SPR49269.1|722908_723598_+	putative periplasmic protein	NA	NA	NA	NA	NA
SPR49270.1|723597_724647_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR49271.1|724643_725438_+	putative ABC transport ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
SPR49272.1|727619_728570_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49273.1|728549_730565_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR49274.1|730707_731937_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49275.1|731939_733382_-	pyruvate kinase	NA	NA	NA	NA	NA
SPR49276.1|733486_734632_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
SPR49277.1|734663_735461_-	rRNA small subunit methyltransferase A	NA	NA	NA	NA	NA
SPR49278.1|735485_737045_-	chaperone SurA	NA	NA	NA	NA	NA
SPR49279.1|737041_739408_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
SPR49280.1|739523_740627_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49281.1|740626_741319_+	nucleotidyl transferase	NA	NA	NA	NA	NA
SPR49282.1|741534_742164_+	putative inner membrane protein	NA	NA	NA	NA	NA
SPR49283.1|742148_742490_-	putative pterin-4-alpha-carbinolamine dehydratase	NA	NA	NA	NA	NA
SPR49284.1|742549_743152_-	outer membrane protein	NA	NA	NA	NA	NA
SPR49285.1|743257_744208_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49286.1|744306_745257_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49287.1|745416_746289_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
SPR49288.1|746629_746848_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49289.1|746887_748267_-	aminotransferase	NA	NA	NA	NA	NA
SPR49290.1|748308_749706_-	amidase	NA	NA	NA	NA	NA
SPR49291.1|749745_751398_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
SPR49292.1|751401_752286_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR49293.1|752285_753227_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR49294.1|753305_754925_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR49295.1|755091_755907_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR49296.1|755974_756544_-	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR49297.1|756544_757495_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 8
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	760703	829706	4160618	transposase	Streptococcus_phage(16.67%)	54	NA	NA
SPR49301.1|760703_761654_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49302.1|761897_762488_+	exported protein	NA	NA	NA	NA	NA
SPR49303.1|762503_764909_-	ferric siderophore receptor	NA	NA	NA	NA	NA
SPR49304.1|765067_766039_-	membrane protein	NA	NA	NA	NA	NA
SPR49305.1|766170_766695_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
SPR49306.1|766654_767605_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49307.1|767826_770022_-	DNA methylase	NA	NA	NA	NA	NA
SPR49308.1|770094_770523_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR49309.1|770624_771575_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49310.1|771690_772134_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SPR49311.1|772196_772991_+	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR49312.1|773156_774293_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
SPR49313.1|774363_775497_-	probable GTP-binding protein	NA	NA	NA	NA	NA
SPR49314.1|775646_775907_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR49315.1|775940_776252_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR49316.1|776676_777825_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49317.1|777939_778905_+	octaprenyl-diphosphate synthase	NA	NA	NA	NA	NA
SPR49318.1|779173_780040_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49319.1|780170_782219_+	hydantoin utilization protein A	NA	NA	NA	NA	NA
SPR49320.1|782236_784234_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
SPR49321.1|784268_785606_+	amino acid deaminase	NA	NA	NA	NA	NA
SPR49322.1|785868_787722_+|transposase	phusion between IS481 transposase and tripartite tricarboxylate transporter family receptor	transposase	NA	NA	NA	NA
SPR49323.1|787776_789258_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR49324.1|789273_789831_-	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
SPR49325.1|790309_795430_+	bifunctional hemolysin-adenylate cyclase	NA	NA	NA	NA	NA
SPR49326.1|795507_797646_+	cyclolysin secretion/procession ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
SPR49327.1|797642_798965_+	cyclolysin secretion protein CyaD	NA	NA	NA	NA	NA
SPR49328.1|798966_800391_+	cyclolysin secretion protein CyaE	NA	NA	NA	NA	NA
SPR49329.1|800484_801390_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49330.1|801454_802369_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
SPR49331.1|803206_803890_+	glutamate/aspartate transporter permease GltK	NA	NA	NA	NA	NA
SPR49332.1|803921_804650_+	glutamate/aspartate transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
SPR49333.1|804679_805540_+	aminotransferase	NA	NA	NA	NA	NA
SPR49334.1|805547_806114_-	membrane protein	NA	NA	NA	NA	NA
SPR49335.1|806202_807159_-	exported protein	NA	NA	NA	NA	NA
SPR49336.1|807203_807956_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
SPR49337.1|807952_809698_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
SPR49338.1|809830_810517_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49339.1|810917_811856_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49340.1|811871_812582_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49341.1|812738_813746_-	Zinc-binding dehydrogenase	NA	NA	NA	NA	NA
SPR49342.1|813786_815319_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
SPR49343.1|815315_816413_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49344.1|816430_817213_-	membrane protein	NA	NA	NA	NA	NA
SPR49345.1|817224_818088_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
SPR49346.1|818106_819204_-	exported protein	NA	NA	NA	NA	NA
SPR49347.1|819272_820172_-	dioxygenase	NA	NA	NA	NA	NA
SPR49348.1|820233_821928_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
SPR49349.1|822127_823063_-	mechanosensitive channel protein	NA	NA	NA	NA	NA
SPR49350.1|823168_824119_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49351.1|824217_824874_-	exported protein	NA	NA	NA	NA	NA
SPR49352.1|825021_827730_+	aminopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
SPR49353.1|827739_828759_+	fructose-16-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
SPR49354.1|828755_829706_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 9
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	862453	912766	4160618	holin,transposase	Vibrio_phage(33.33%)	42	NA	NA
SPR49382.1|862453_863404_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49383.1|863421_863976_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49384.1|863977_864412_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49385.1|864408_864843_+	exported protein	NA	NA	NA	NA	NA
SPR49386.1|864826_865630_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR49387.1|865646_866462_-	DNA repair exonuclease	NA	NA	NA	NA	NA
SPR49388.1|866458_867274_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SPR49389.1|867420_868122_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49390.1|868149_870108_-|holin	high-affinity choline transport protein	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
SPR49391.1|870190_871141_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49392.1|871361_872030_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR49393.1|872153_873260_+	HlyD family secretion protein	NA	NA	NA	NA	NA
SPR49394.1|873272_876386_+	multidrug efflux system membrane protein	NA	S5VTK5	Leptospira_phage	21.5	2.6e-57
SPR49395.1|876382_877876_+	multidrug efflux system outer membrane protein	NA	NA	NA	NA	NA
SPR49396.1|877890_878562_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR49397.1|878605_879058_-	azurin	NA	NA	NA	NA	NA
SPR49398.1|879240_879888_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR49399.1|879991_882040_+	hydantoin utilization protein A	NA	NA	NA	NA	NA
SPR49400.1|882036_884049_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
SPR49401.1|884074_885409_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49402.1|885517_886510_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR49403.1|886576_888661_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49404.1|888685_889657_-	exported protein	NA	NA	NA	NA	NA
SPR49405.1|889785_890817_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49406.1|890820_891972_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
SPR49407.1|892190_893066_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49408.1|893143_893968_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR49409.1|894164_895094_-	IS110 family	NA	NA	NA	NA	NA
SPR49410.1|895377_896361_-	putative exported protein	NA	NA	NA	NA	NA
SPR49411.1|896419_897547_-	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR49412.1|897959_899348_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49413.1|899378_900368_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR49414.1|900478_901711_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
SPR49415.1|901992_902793_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49416.1|902815_905047_-|holin	high-affinity choline transport protein	holin	NA	NA	NA	NA
SPR49417.1|905834_906281_-	protein translocase subunit SecG	NA	NA	NA	NA	NA
SPR49418.1|906302_907049_-	triosephosphate isomerase	NA	NA	NA	NA	NA
SPR49419.1|907192_908170_-	NAD(P)H quinone oxidoreductase	NA	NA	NA	NA	NA
SPR49420.1|908869_909415_+	hypothetical protein	NA	K4HZX4	Acidithiobacillus_phage	30.5	3.0e-09
SPR49421.1|909408_910626_-	threonine dehydratase catabolic	NA	NA	NA	NA	NA
SPR49422.1|910766_911717_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49423.1|911815_912766_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 10
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	922378	965295	4160618	transposase	Bacillus_phage(50.0%)	40	NA	NA
SPR49432.1|922378_923329_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49433.1|923427_924378_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49434.1|924374_926207_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
SPR49435.1|926605_927265_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
SPR49436.1|927358_927505_+	vir-repressed protein	NA	NA	NA	NA	NA
SPR49437.1|927613_927781_+	putative exported protein	NA	NA	NA	NA	NA
SPR49438.1|927792_928473_-	lipoprotein	NA	NA	NA	NA	NA
SPR49439.1|928754_929471_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49440.1|929485_930787_-	phospholipase	NA	NA	NA	NA	NA
SPR49441.1|930921_931740_-	partial	NA	NA	NA	NA	NA
SPR49442.1|932955_935334_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
SPR49443.1|936051_937404_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
SPR49444.1|937432_937954_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
SPR49445.1|937950_939405_+	carboxylase	NA	NA	NA	NA	NA
SPR49446.1|939439_939688_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49447.1|939793_940669_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49448.1|940694_941750_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49449.1|941762_942554_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49450.1|942586_943957_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
SPR49451.1|943972_945052_+	partial	NA	NA	NA	NA	NA
SPR49452.1|945133_946084_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49453.1|946148_946358_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49454.1|946517_946730_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49455.1|946849_947968_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
SPR49456.1|948064_948280_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49457.1|948473_948725_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49458.1|948837_949788_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49459.1|949784_950168_-	putative ferredoxin	NA	NA	NA	NA	NA
SPR49460.1|950222_952037_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
SPR49461.1|952186_953014_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
SPR49462.1|953059_954040_+	oxidoreductase	NA	NA	NA	NA	NA
SPR49463.1|954036_954249_-	putative membrane protein	NA	NA	NA	NA	NA
SPR49464.1|954245_955427_-	membrane protein	NA	NA	NA	NA	NA
SPR49465.1|955590_956325_+	serine/threonine protein phosphatase 1	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
SPR49466.1|956326_958939_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
SPR49467.1|959074_960988_-	putative peptidase	NA	NA	NA	NA	NA
SPR49468.1|961603_962014_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49469.1|962111_963197_+	DNA-damage-inducible protein p	NA	NA	NA	NA	NA
SPR49470.1|963295_964246_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49471.1|964344_965295_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 11
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1101963	1154427	4160618	protease,tRNA,transposase	uncultured_Mediterranean_phage(42.86%)	44	NA	NA
SPR49594.1|1101963_1103391_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR49595.1|1103547_1103961_+	partial	NA	NA	NA	NA	NA
SPR49596.1|1104328_1105258_-	IS110 family	NA	NA	NA	NA	NA
SPR49597.1|1105677_1106613_-	protein-export membrane protein	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
SPR49598.1|1106662_1108543_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR49599.1|1108609_1108954_-	putative secreted protein	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
SPR49600.1|1109098_1110235_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
SPR49601.1|1110231_1111275_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SPR49602.1|1111462_1112899_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
SPR49603.1|1112989_1113631_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
SPR49604.1|1114053_1114983_+	IS110 family	NA	NA	NA	NA	NA
SPR49605.1|1115315_1118048_+	pertactin autotransporter	NA	NA	NA	NA	NA
SPR49606.1|1118114_1119596_-	siroheme synthase	NA	NA	NA	NA	NA
SPR49607.1|1119799_1120516_+	membrane protein	NA	NA	NA	NA	NA
SPR49608.1|1120600_1120918_+	putative membrane protein	NA	NA	NA	NA	NA
SPR49609.1|1120958_1121372_+	putative membrane protein	NA	NA	NA	NA	NA
SPR49610.1|1121373_1121733_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49611.1|1121775_1123320_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
SPR49612.1|1123403_1124234_+	transglycosylase	NA	NA	NA	NA	NA
SPR49613.1|1124268_1125423_-	aminotransferase	NA	NA	NA	NA	NA
SPR49614.1|1126454_1128743_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR49615.1|1129949_1130414_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49616.1|1130440_1131391_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49617.1|1131489_1132440_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49618.1|1132807_1133584_-	phosphate transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
SPR49619.1|1133628_1134486_-	phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR49620.1|1134507_1135524_-	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
SPR49621.1|1135658_1136699_-	phosphate-binding periplasmic protein precursor	NA	M4QHS4	Cyanophage	40.2	2.1e-51
SPR49622.1|1136893_1138975_-	polyphosphate kinase	NA	NA	NA	NA	NA
SPR49623.1|1139210_1140704_+	exopolyphosphatase	NA	NA	NA	NA	NA
SPR49624.1|1140822_1140933_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49625.1|1140934_1141729_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49626.1|1141949_1143308_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
SPR49627.1|1143304_1144147_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
SPR49628.1|1144165_1146052_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
SPR49629.1|1146289_1146922_-	rRNA large subunit methyltransferase E	NA	NA	NA	NA	NA
SPR49630.1|1146940_1147543_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49631.1|1147694_1148645_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49632.1|1148815_1149226_+	partial	NA	NA	NA	NA	NA
SPR49633.1|1149447_1150248_-	membrane protein	NA	NA	NA	NA	NA
SPR49634.1|1150291_1151278_-	homoserine kinase	NA	NA	NA	NA	NA
SPR49635.1|1151453_1152431_+|tRNA	tRNA-dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SPR49636.1|1152427_1153378_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49637.1|1153476_1154427_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 12
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1162109	1234479	4160618	protease,tRNA,transposase	Catovirus(25.0%)	57	NA	NA
SPR49644.1|1162109_1163060_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49645.1|1163227_1164052_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
SPR49646.1|1164051_1164930_+	high-affinity branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR49647.1|1165181_1165343_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49648.1|1165619_1165778_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49649.1|1165834_1166950_+	amino acids binding protein	NA	NA	NA	NA	NA
SPR49650.1|1166957_1167773_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
SPR49651.1|1167769_1169635_+	long-chain fatty-acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
SPR49652.1|1169713_1170346_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49653.1|1170342_1170645_-	membrane protein	NA	NA	NA	NA	NA
SPR49654.1|1170687_1172208_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
SPR49655.1|1172214_1172970_-	probable short chain dehydrogenase	NA	NA	NA	NA	NA
SPR49656.1|1172999_1173881_-	peptide chain release factor 2	NA	NA	NA	NA	NA
SPR49657.1|1174206_1175943_-	single-stranded-DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
SPR49658.1|1175888_1176830_-	exported protein	NA	NA	NA	NA	NA
SPR49659.1|1176875_1178156_+	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
SPR49660.1|1178148_1178844_+	lipoprotein releasing system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
SPR49661.1|1178877_1179705_+	putative deoxyribonuclease	NA	NA	NA	NA	NA
SPR49662.1|1179986_1183217_+|protease	serine protease	protease	NA	NA	NA	NA
SPR49663.1|1183952_1187879_+	outer membrane ligand binding protein	NA	NA	NA	NA	NA
SPR49664.1|1188072_1189686_+	partial	NA	NA	NA	NA	NA
SPR49665.1|1189778_1191575_+|transposase	IS481 transposase phused to partial competence protein	transposase	NA	NA	NA	NA
SPR49666.1|1191616_1192543_+	hydrolase	NA	NA	NA	NA	NA
SPR49667.1|1192612_1193458_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49668.1|1193525_1194080_+	transcription elongation factor	NA	NA	NA	NA	NA
SPR49669.1|1194126_1195077_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49670.1|1195175_1195799_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
SPR49671.1|1195976_1198259_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
SPR49672.1|1198413_1201110_-	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR49673.1|1201235_1201724_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR49674.1|1201759_1203622_+	membrane protein	NA	NA	NA	NA	NA
SPR49675.1|1203600_1203810_+	oligopeptide transporter OPT family	NA	NA	NA	NA	NA
SPR49676.1|1204134_1207005_+	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR49677.1|1207050_1208265_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
SPR49678.1|1208494_1209922_+	2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
SPR49679.1|1210019_1211111_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49680.1|1211123_1211882_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR49681.1|1211969_1212872_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49682.1|1212868_1213819_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49683.1|1213948_1214932_-	exported protein	NA	NA	NA	NA	NA
SPR49684.1|1214986_1215709_-	probable short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR49685.1|1216176_1217043_+	partial	NA	NA	NA	NA	NA
SPR49686.1|1217187_1218543_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR49687.1|1218623_1220999_-	transcription accessory protein	NA	NA	NA	NA	NA
SPR49688.1|1221163_1223239_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
SPR49689.1|1223300_1224149_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
SPR49690.1|1224202_1225165_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SPR49691.1|1225152_1225908_+	laccase domain-containing protein	NA	NA	NA	NA	NA
SPR49692.1|1226015_1227653_+	poly-beta-hydroxybutyrate polymerase	NA	NA	NA	NA	NA
SPR49693.1|1227720_1228458_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR49694.1|1228560_1229136_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49695.1|1229308_1229845_+	exported protein	NA	NA	NA	NA	NA
SPR49696.1|1229877_1230192_+	putative exported protein	NA	NA	NA	NA	NA
SPR49697.1|1230207_1231053_+	membrane protein	NA	NA	NA	NA	NA
SPR49698.1|1231091_1232471_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
SPR49699.1|1232548_1233430_+	conserved hypotheticals protein	NA	NA	NA	NA	NA
SPR49700.1|1233528_1234479_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 13
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1354189	1422676	4160618	transposase	Planktothrix_phage(33.33%)	59	NA	NA
SPR49811.1|1354189_1355140_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49812.1|1355241_1355898_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
SPR49813.1|1355908_1356547_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR49814.1|1356910_1357519_-	partial	NA	NA	NA	NA	NA
SPR49815.1|1357526_1357883_+	partial	NA	NA	NA	NA	NA
SPR49816.1|1357964_1358666_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
SPR49817.1|1358666_1359434_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
SPR49818.1|1359430_1360669_-	leucine/isoleucine/valine ABC transporter permease	NA	NA	NA	NA	NA
SPR49819.1|1360668_1361595_-	high-affinity branched-chain amino acid transport system permease protein	NA	NA	NA	NA	NA
SPR49820.1|1361697_1362813_-	leucine/isoleucine/valine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR49821.1|1362828_1363779_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49822.1|1364132_1364714_-	membrane protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
SPR49823.1|1364710_1365544_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
SPR49824.1|1365754_1367068_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
SPR49825.1|1367244_1368126_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR49826.1|1368145_1368997_+	sn-glycerol-3-phosphate transport system permease protein	NA	NA	NA	NA	NA
SPR49827.1|1369049_1370138_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
SPR49828.1|1370248_1371376_-	leu/Ile/val-binding protein	NA	NA	NA	NA	NA
SPR49829.1|1371496_1372222_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49830.1|1372320_1373271_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49831.1|1373492_1373870_-	putative membrane protein	NA	NA	NA	NA	NA
SPR49832.1|1374017_1374515_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49833.1|1374511_1375039_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49834.1|1375172_1375988_+	putative exported protein	NA	NA	NA	NA	NA
SPR49835.1|1376000_1377182_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SPR49836.1|1377229_1378123_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR49837.1|1378249_1378720_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49838.1|1378845_1379673_-	lipoprotein	NA	NA	NA	NA	NA
SPR49839.1|1379701_1380478_-	putative lipoate-protein ligase A	NA	NA	NA	NA	NA
SPR49840.1|1380474_1380750_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49841.1|1380764_1381229_-	acetyltransferase	NA	NA	NA	NA	NA
SPR49842.1|1381240_1381942_-	glutathione transferase	NA	NA	NA	NA	NA
SPR49843.1|1382051_1382552_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
SPR49844.1|1382634_1385265_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49845.1|1385440_1385776_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
SPR49846.1|1385963_1387412_+	CoA-transferase	NA	NA	NA	NA	NA
SPR49847.1|1387469_1387814_+	putative arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
SPR49848.1|1387920_1388460_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR49849.1|1388552_1389503_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49850.1|1390854_1391259_-	membrane protein	NA	NA	NA	NA	NA
SPR49851.1|1392495_1392819_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49852.1|1392821_1393709_-	putative exported protein	NA	NA	NA	NA	NA
SPR49853.1|1393741_1394167_-	universal stress family protein	NA	NA	NA	NA	NA
SPR49854.1|1394238_1394592_-	partial	NA	NA	NA	NA	NA
SPR49855.1|1394831_1395338_-	putative membrane protein	NA	NA	NA	NA	NA
SPR49856.1|1395376_1396708_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49857.1|1396767_1397583_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
SPR49858.1|1397579_1398434_+	pyridoxine kinase	NA	NA	NA	NA	NA
SPR49859.1|1398534_1400454_+	ATPase	NA	NA	NA	NA	NA
SPR49860.1|1405406_1407161_-	alpha amylase	NA	NA	NA	NA	NA
SPR49861.1|1407157_1409278_-	glycosyl hydrolase	NA	NA	NA	NA	NA
SPR49862.1|1409282_1411478_-	14-alpha-glucan-branching protein	NA	NA	NA	NA	NA
SPR49863.1|1411474_1414816_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
SPR49864.1|1417618_1418569_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49865.1|1418634_1418814_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49866.1|1418930_1419686_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49867.1|1419672_1420818_-	hypothetical protein	NA	NA	NA	NA	NA
SPR49868.1|1420871_1421708_-	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA	NA
SPR49869.1|1421725_1422676_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 14
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1526398	1584642	4160618	tRNA,transposase	Planktothrix_phage(28.57%)	55	NA	NA
SPR49965.1|1526398_1527349_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49966.1|1527466_1528393_+	putative membrane protein	NA	NA	NA	NA	NA
SPR49967.1|1528458_1529616_+	membrane protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
SPR49968.1|1529596_1530064_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
SPR49969.1|1530211_1531162_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49970.1|1531178_1531613_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49971.1|1531602_1531953_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49972.1|1532149_1533304_+	probable acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR49973.1|1533300_1534473_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
SPR49974.1|1534520_1535414_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
SPR49975.1|1535459_1535897_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR49976.1|1535956_1536646_+	membrane protein	NA	NA	NA	NA	NA
SPR49977.1|1536655_1537606_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49978.1|1537704_1538655_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49979.1|1538753_1539716_-	transaldolase B	NA	H6WFR1	Cyanophage	29.2	7.5e-11
SPR49980.1|1539942_1541097_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
SPR49981.1|1541107_1544350_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
SPR49982.1|1544499_1545207_+	partial	NA	NA	NA	NA	NA
SPR49983.1|1545371_1546016_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
SPR49984.1|1546026_1546926_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR49985.1|1546973_1548059_-	probable ATP-binding component of ABC transporter	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
SPR49986.1|1548055_1549750_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR49987.1|1549783_1549942_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49988.1|1549928_1550879_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR49989.1|1551365_1552391_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
SPR49990.1|1552432_1553494_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
SPR49991.1|1553527_1554364_+	lipoprotein	NA	NA	NA	NA	NA
SPR49992.1|1554373_1554916_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
SPR49993.1|1554929_1556222_-	molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
SPR49994.1|1556218_1556812_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
SPR49995.1|1556964_1558062_+	putative iron sulfur binding protein	NA	NA	NA	NA	NA
SPR49996.1|1558068_1558629_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49997.1|1558625_1559306_+	hypothetical protein	NA	NA	NA	NA	NA
SPR49998.1|1559362_1561420_+	iron-sulfur binding protein	NA	NA	NA	NA	NA
SPR49999.1|1561416_1562046_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50000.1|1562197_1562407_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50001.1|1562421_1565391_+	formate dehydrogenase	NA	NA	NA	NA	NA
SPR50002.1|1565636_1566029_+	formate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR50003.1|1566025_1566259_+	putative lipoprotein	NA	NA	NA	NA	NA
SPR50004.1|1566271_1567429_+	formate dehydrogenase subunit C	NA	NA	NA	NA	NA
SPR50005.1|1567451_1567826_+	exported protein	NA	NA	NA	NA	NA
SPR50006.1|1567859_1568975_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50007.1|1569874_1570579_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
SPR50008.1|1570575_1571394_+	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50009.1|1571677_1573081_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
SPR50010.1|1573095_1573746_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
SPR50011.1|1573827_1574904_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
SPR50012.1|1575090_1576221_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR50013.1|1576391_1577975_+	membrane protein	NA	NA	NA	NA	NA
SPR50014.1|1577978_1578791_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
SPR50015.1|1578935_1580030_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50016.1|1580241_1580871_+	membrane protein	NA	NA	NA	NA	NA
SPR50017.1|1580873_1582541_+	membrane protein	NA	NA	NA	NA	NA
SPR50018.1|1582555_1583212_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
SPR50019.1|1583691_1584642_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 15
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1630324	1696652	4160618	transposase	Streptococcus_virus(10.0%)	60	NA	NA
SPR50070.1|1630324_1631275_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50071.1|1631281_1632394_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
SPR50072.1|1633080_1634283_+	membrane protein	NA	NA	NA	NA	NA
SPR50073.1|1634318_1634465_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50074.1|1634486_1637147_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50075.1|1637159_1640564_+	nuclease/helicase	NA	NA	NA	NA	NA
SPR50076.1|1641231_1643457_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
SPR50077.1|1643503_1643830_+	nucleoid-associated protein	NA	NA	NA	NA	NA
SPR50078.1|1643880_1644489_+	recombination protein RecR	NA	NA	NA	NA	NA
SPR50079.1|1644587_1645538_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50080.1|1645607_1646372_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50081.1|1646368_1646905_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50082.1|1647071_1647923_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
SPR50083.1|1647982_1648609_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50084.1|1648605_1649556_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50085.1|1649654_1650776_-	exported protein	NA	NA	NA	NA	NA
SPR50086.1|1650756_1651758_-	aminopeptidase	NA	NA	NA	NA	NA
SPR50087.1|1651863_1653276_-	thiol oxidoreductase	NA	NA	NA	NA	NA
SPR50088.1|1653371_1654676_-	exported protein	NA	NA	NA	NA	NA
SPR50089.1|1654787_1655345_-	membrane protein	NA	NA	NA	NA	NA
SPR50090.1|1655615_1656170_+	chromate reductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
SPR50091.1|1656625_1656841_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50092.1|1657095_1659693_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
SPR50093.1|1659689_1660877_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50094.1|1661145_1661508_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50095.1|1661504_1662149_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
SPR50096.1|1662237_1663359_-	lipoprotein	NA	NA	NA	NA	NA
SPR50097.1|1663376_1664282_-	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR50098.1|1664367_1664766_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50099.1|1665174_1666125_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50100.1|1666306_1667059_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50101.1|1667187_1667787_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
SPR50102.1|1667783_1668512_+	glutamine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
SPR50103.1|1668524_1670804_-	guanosine-3'5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
SPR50104.1|1670828_1671032_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR50105.1|1671073_1671706_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
SPR50106.1|1671841_1672759_-	cytochrome C	NA	NA	NA	NA	NA
SPR50107.1|1672755_1673469_-	cytochrome C	NA	NA	NA	NA	NA
SPR50108.1|1673706_1674477_+	putative oxidoreductase	NA	NA	NA	NA	NA
SPR50109.1|1674481_1675081_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
SPR50110.1|1675325_1676816_+	AMP nucleosidase	NA	NA	NA	NA	NA
SPR50111.1|1676874_1677159_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR50112.1|1677155_1677284_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50113.1|1677296_1677452_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50114.1|1677724_1678651_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50115.1|1678787_1679528_+	ribonuclease PH	NA	NA	NA	NA	NA
SPR50116.1|1679694_1681071_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50117.1|1681252_1682158_+	probable transcriptional regulator	NA	NA	NA	NA	NA
SPR50118.1|1682240_1683932_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
SPR50119.1|1683809_1685612_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50120.1|1685738_1686380_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
SPR50121.1|1686478_1687429_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50122.1|1687450_1688671_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR50123.1|1688856_1690269_+	glutamine synthetase	NA	NA	NA	NA	NA
SPR50124.1|1690332_1691400_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
SPR50125.1|1691399_1692887_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
SPR50126.1|1692896_1693841_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50127.1|1694000_1694699_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50128.1|1694776_1695682_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50129.1|1695701_1696652_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 16
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1732601	1770014	4160618	transposase	Brazilian_cedratvirus(33.33%)	34	NA	NA
SPR50157.1|1732601_1733552_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50158.1|1733610_1734384_+	oxidoreductase	NA	NA	NA	NA	NA
SPR50159.1|1734376_1735933_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
SPR50160.1|1735929_1736880_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50161.1|1736978_1737929_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50162.1|1738392_1739280_+	oxidoreductase	NA	NA	NA	NA	NA
SPR50163.1|1739255_1739858_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50164.1|1740097_1740799_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR50165.1|1740792_1741575_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
SPR50166.1|1741759_1742710_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50167.1|1742808_1743546_-	membrane protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
SPR50168.1|1743735_1744494_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR50169.1|1744540_1745530_-	exported protein	NA	NA	NA	NA	NA
SPR50170.1|1745707_1746676_-	exported protein	NA	NA	NA	NA	NA
SPR50171.1|1747707_1748160_+	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
SPR50172.1|1748215_1749184_+	regulatory protein	NA	NA	NA	NA	NA
SPR50173.1|1749192_1750134_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50174.1|1750130_1751618_+	von Willebrand factor type A domain protein	NA	NA	NA	NA	NA
SPR50175.1|1751608_1753123_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50176.1|1753119_1754466_+	exported protein	NA	NA	NA	NA	NA
SPR50177.1|1754468_1755503_+	nonspecific acid phosphatase	NA	NA	NA	NA	NA
SPR50178.1|1755552_1757178_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
SPR50179.1|1757730_1758681_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50180.1|1758785_1759733_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50181.1|1759786_1761601_-	two component system sensor histidine kinase	NA	NA	NA	NA	NA
SPR50182.1|1761593_1762268_-	response regulator protein	NA	NA	NA	NA	NA
SPR50183.1|1762397_1765472_+	autotransporter	NA	NA	NA	NA	NA
SPR50184.1|1765485_1765785_-	putative DNA-binding protein	NA	NA	NA	NA	NA
SPR50185.1|1765787_1765958_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50186.1|1766099_1766723_-	glutathione S-transferase	NA	NA	NA	NA	NA
SPR50187.1|1766966_1767836_+	alpha-ketoglutarate-dependent 24-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA	NA
SPR50188.1|1767813_1768758_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50189.1|1768843_1768945_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50190.1|1769063_1770014_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 17
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1780521	1836836	4160618	tRNA,transposase	uncultured_Caudovirales_phage(13.33%)	57	NA	NA
SPR50202.1|1780521_1781472_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50203.1|1781580_1781769_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50204.1|1781765_1782503_-	NADPH-dependent FMN reductase	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
SPR50205.1|1782480_1782753_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	71.1	1.9e-28
SPR50206.1|1782926_1784114_-	membrane protein	NA	NA	NA	NA	NA
SPR50207.1|1784117_1784468_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR50208.1|1784701_1786114_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50209.1|1786217_1787189_+	exported protein	NA	NA	NA	NA	NA
SPR50210.1|1787202_1787916_+	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR50211.1|1787920_1788823_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50212.1|1788944_1789241_+	putative membrane protein	NA	NA	NA	NA	NA
SPR50213.1|1789339_1790290_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50214.1|1790280_1791027_-	partial	NA	NA	NA	NA	NA
SPR50215.1|1791448_1794382_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
SPR50216.1|1794381_1794726_+	putative pH adaptation potassium efflux protein	NA	NA	NA	NA	NA
SPR50217.1|1794722_1796351_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
SPR50218.1|1796350_1796827_+	monovalent cation/H+ antiporter subunit E	NA	NA	NA	NA	NA
SPR50219.1|1796826_1797108_+	pH adaptation potassium efflux system protein F	NA	NA	NA	NA	NA
SPR50220.1|1797104_1797431_+	monovalent cation/H+ antiporter subunit G	NA	NA	NA	NA	NA
SPR50221.1|1797586_1798537_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50222.1|1798613_1799123_+	exported protein	NA	NA	NA	NA	NA
SPR50223.1|1799155_1800106_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50224.1|1800269_1801118_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50225.1|1801125_1801617_+	putative zinc-binding hydrolase	NA	S4VYT2	Pandoravirus	38.4	3.3e-07
SPR50226.1|1801613_1802615_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
SPR50227.1|1802627_1803422_-	hydratase/isomerase	NA	NA	NA	NA	NA
SPR50228.1|1805368_1805992_-	putative membrane protein	NA	NA	NA	NA	NA
SPR50229.1|1806118_1807243_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50230.1|1807623_1809228_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
SPR50231.1|1809383_1810160_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
SPR50232.1|1810244_1811243_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50233.1|1811239_1812013_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR50234.1|1812049_1812916_+	ABC transporter	NA	NA	NA	NA	NA
SPR50235.1|1812997_1813948_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50236.1|1813988_1814573_+	hypothetical protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
SPR50237.1|1814590_1814974_-	thioredoxin 2	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
SPR50238.1|1815109_1815673_-	luciferase family oxidoreductase	NA	NA	NA	NA	NA
SPR50239.1|1816333_1817626_-	permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
SPR50240.1|1817760_1818801_+|tRNA	tRNA N6-adenosine threonylcarbamoyltransferase	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
SPR50241.1|1818898_1819828_-	IS110 family	NA	NA	NA	NA	NA
SPR50242.1|1820182_1820818_-	putative membrane protein	NA	NA	NA	NA	NA
SPR50243.1|1820955_1821714_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
SPR50244.1|1821698_1822478_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
SPR50245.1|1822495_1823380_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
SPR50246.1|1823376_1824156_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50247.1|1824260_1824860_+	exported protein	NA	NA	NA	NA	NA
SPR50248.1|1825148_1825901_+	exported protein	NA	NA	NA	NA	NA
SPR50249.1|1826019_1827420_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
SPR50250.1|1827443_1827842_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50251.1|1828017_1828218_+	putative exported protein	NA	NA	NA	NA	NA
SPR50252.1|1828356_1829085_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
SPR50253.1|1829218_1830634_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
SPR50254.1|1830637_1831501_-	rRNA large subunit methyltransferase J	NA	NA	NA	NA	NA
SPR50255.1|1832505_1834461_+	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SPR50256.1|1834442_1834991_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
SPR50257.1|1835103_1835787_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.6	1.3e-22
SPR50258.1|1835885_1836836_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 18
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	1850337	1900706	4160618	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	45	NA	NA
SPR50271.1|1850337_1851288_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50272.1|1851284_1851758_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
SPR50273.1|1851919_1852858_+	membrane protein	NA	NA	NA	NA	NA
SPR50274.1|1852859_1854068_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
SPR50275.1|1854172_1854679_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
SPR50276.1|1854681_1857543_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
SPR50277.1|1857532_1858498_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
SPR50278.1|1858557_1860552_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
SPR50279.1|1860650_1861601_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50280.1|1861699_1862650_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50281.1|1862646_1863021_-	exported protein	NA	NA	NA	NA	NA
SPR50282.1|1863282_1864491_+	fatty acid desaturase	NA	NA	NA	NA	NA
SPR50283.1|1864487_1866788_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
SPR50284.1|1866840_1869453_-	exported protein	NA	NA	NA	NA	NA
SPR50285.1|1869812_1871720_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
SPR50286.1|1871734_1872631_-	50S ribosomal protein L3 glutamine methyltransferase	NA	NA	NA	NA	NA
SPR50287.1|1872637_1873777_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR50288.1|1873776_1874598_-	2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR50289.1|1874623_1875346_-	N-succinyl-LL-diaminopimelate aminotransferase	NA	NA	NA	NA	NA
SPR50290.1|1876168_1876498_-	exported protein	NA	NA	NA	NA	NA
SPR50291.1|1876880_1878137_+	autotransporter	NA	NA	NA	NA	NA
SPR50292.1|1878211_1878493_+	putative membrane protein	NA	NA	NA	NA	NA
SPR50293.1|1878534_1878855_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50294.1|1879161_1879365_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
SPR50295.1|1879448_1880015_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
SPR50296.1|1880360_1880561_+	cold shock-like protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
SPR50297.1|1880672_1881233_-	hypothetical protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
SPR50298.1|1881429_1882740_+	trigger factor	NA	NA	NA	NA	NA
SPR50299.1|1882742_1883396_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
SPR50300.1|1883500_1884805_+|protease	ATP-dependent Clp protease ATP-binding protein	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
SPR50301.1|1884993_1887447_+|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
SPR50302.1|1887570_1888521_-	probable LysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR50303.1|1888748_1889972_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50304.1|1890037_1891009_+	exported protein	NA	NA	NA	NA	NA
SPR50305.1|1891075_1891477_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50306.1|1891496_1892294_+	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR50307.1|1892290_1892722_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50308.1|1892718_1893876_+	thiolase	NA	NA	NA	NA	NA
SPR50309.1|1893897_1894674_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR50310.1|1894676_1895855_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR50311.1|1895847_1896420_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR50312.1|1896838_1897555_+	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA	NA
SPR50313.1|1897547_1898189_+	CoA transferase subunit B	NA	NA	NA	NA	NA
SPR50314.1|1898223_1898955_+	partial	NA	NA	NA	NA	NA
SPR50315.1|1899755_1900706_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 19
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	2024129	2076330	4160618	transposase	Mycobacterium_phage(25.0%)	51	NA	NA
SPR50436.1|2024129_2025080_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50437.1|2025178_2025586_-	N-acetyltransferase	NA	NA	NA	NA	NA
SPR50438.1|2025732_2026683_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50439.1|2026701_2027049_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50440.1|2027077_2028517_-	transmembrane efflux protein	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
SPR50441.1|2028535_2028931_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50442.1|2029105_2029714_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50443.1|2029726_2030545_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
SPR50444.1|2030496_2031471_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
SPR50445.1|2031499_2032546_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50446.1|2032557_2034774_-	exported oxidoreductase subunit	NA	NA	NA	NA	NA
SPR50447.1|2034787_2035246_-	oxidoreductase subunit	NA	NA	NA	NA	NA
SPR50448.1|2035403_2035748_-	exported protein	NA	NA	NA	NA	NA
SPR50449.1|2035904_2036810_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50450.1|2036932_2037910_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50451.1|2037917_2038841_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	50.2	8.0e-79
SPR50452.1|2039976_2040906_+	IS110 family	NA	NA	NA	NA	NA
SPR50453.1|2041048_2042401_-	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
SPR50454.1|2042575_2042872_+	putative membrane protein	NA	NA	NA	NA	NA
SPR50455.1|2042970_2043921_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50456.1|2044245_2045229_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
SPR50457.1|2045267_2046239_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR50458.1|2046242_2047097_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50459.1|2047115_2047937_+	hydrolase	NA	NA	NA	NA	NA
SPR50460.1|2047968_2048763_+	amidase	NA	NA	NA	NA	NA
SPR50461.1|2049374_2050208_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR50462.1|2050493_2051999_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50463.1|2052040_2052823_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR50464.1|2052892_2053339_-	membrane protein	NA	NA	NA	NA	NA
SPR50465.1|2053335_2054562_-	membrane protein	NA	NA	NA	NA	NA
SPR50466.1|2054554_2054959_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50467.1|2055118_2055421_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR50468.1|2055417_2056368_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50469.1|2056589_2057540_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50470.1|2057638_2058604_-	exported protein	NA	NA	NA	NA	NA
SPR50471.1|2058741_2059548_-	putative lysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR50472.1|2060171_2061995_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
SPR50473.1|2062352_2063723_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50474.1|2063733_2064930_+	thiolase	NA	NA	NA	NA	NA
SPR50475.1|2065002_2066322_+	acyl-CoA ligase	NA	NA	NA	NA	NA
SPR50476.1|2066318_2067194_+	esterase	NA	NA	NA	NA	NA
SPR50477.1|2067224_2068373_-	fatty-acyl-CoA racemase	NA	NA	NA	NA	NA
SPR50478.1|2068390_2068705_-	ferredoxin	NA	NA	NA	NA	NA
SPR50479.1|2068726_2069449_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
SPR50480.1|2069448_2070261_-	enoyl-CoA hydratase/isomerase-like protein	NA	NA	NA	NA	NA
SPR50481.1|2070271_2070799_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50482.1|2070804_2072061_-	dioxygenase hydroxylase large subunit	NA	NA	NA	NA	NA
SPR50483.1|2072419_2073559_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50484.1|2073636_2074509_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR50485.1|2074512_2075298_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR50486.1|2075379_2076330_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 20
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	2319977	2369688	4160618	tRNA,transposase	Hokovirus(14.29%)	44	NA	NA
SPR50691.1|2319977_2320928_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50692.1|2320936_2324653_+	virulence sensor protein BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
SPR50693.1|2324696_2325572_-	regulatory protein BvgR	NA	NA	NA	NA	NA
SPR50694.1|2325705_2326500_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50695.1|2326557_2327907_-	amidase	NA	NA	NA	NA	NA
SPR50696.1|2328709_2329714_-	TRAP transporter large permease	NA	NA	NA	NA	NA
SPR50697.1|2329923_2330376_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50698.1|2330605_2331106_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50699.1|2331092_2332043_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50700.1|2332159_2332879_+	GntR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR50701.1|2333051_2334038_+	exported protein	NA	NA	NA	NA	NA
SPR50702.1|2334038_2334521_+	membrane protein	NA	NA	NA	NA	NA
SPR50703.1|2334524_2335808_+	membrane protein	NA	NA	NA	NA	NA
SPR50704.1|2335804_2336743_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
SPR50705.1|2336739_2338449_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
SPR50706.1|2338458_2339706_+	N-carbamoyl-L-amino acid amidohydrolase	NA	NA	NA	NA	NA
SPR50707.1|2339755_2341375_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
SPR50708.1|2341316_2342606_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR50709.1|2342798_2343542_-	formimidoylglutamase	NA	NA	NA	NA	NA
SPR50710.1|2343743_2344517_-	glutamine transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
SPR50711.1|2344786_2345182_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPR50712.1|2345178_2345922_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50713.1|2345996_2346737_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR50714.1|2346932_2347769_-	exported protein	NA	NA	NA	NA	NA
SPR50715.1|2347819_2348590_-	hypothetical protein	NA	NA	NA	NA	NA
SPR50716.1|2348639_2349692_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SPR50717.1|2349688_2350315_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
SPR50718.1|2350311_2351346_-	exported protein	NA	NA	NA	NA	NA
SPR50719.1|2351524_2352541_+	hypothetical protein	NA	NA	NA	NA	NA
SPR50720.1|2352639_2353590_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50721.1|2353724_2355506_+	error-prone DNA polymerase	NA	A0A2H4P750	Pseudomonas_phage	30.0	4.6e-54
SPR50722.1|2355548_2356265_+	error-prone DNA polymerase	NA	NA	NA	NA	NA
SPR50723.1|2356330_2357620_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR50724.1|2357738_2358176_-	DNA-binding protein	NA	NA	NA	NA	NA
SPR50725.1|2358219_2359428_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
SPR50726.1|2359574_2360039_+|tRNA	aspartyl-tRNA amidotransferase subunit B	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
SPR50727.1|2360062_2361013_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR50728.1|2361111_2361672_-	L-24-diaminobutyric acid acetyltransferase	NA	NA	NA	NA	NA
SPR50729.1|2361668_2362214_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
SPR50730.1|2362409_2363438_+	SIS family regulator	NA	NA	NA	NA	NA
SPR50731.1|2363478_2364819_+	aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
SPR50732.1|2364927_2365932_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR50733.1|2366038_2368639_+	inner membrane protein	NA	NA	NA	NA	NA
SPR50734.1|2368737_2369688_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 21
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	2742267	2779690	4160618	tRNA,transposase	Salmonella_phage(33.33%)	39	NA	NA
SPR51080.1|2742267_2743218_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51081.1|2743328_2743511_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51082.1|2743610_2744204_-	lipoprotein	NA	NA	NA	NA	NA
SPR51083.1|2744390_2745482_+	exported protein	NA	NA	NA	NA	NA
SPR51084.1|2745981_2746392_-	putative MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR51085.1|2746450_2746780_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
SPR51086.1|2746797_2749215_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR51087.1|2749227_2750250_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
SPR51088.1|2750324_2750684_-	50s ribosomal protein	NA	NA	NA	NA	NA
SPR51089.1|2750699_2750897_-	50s ribosomal protein l35	NA	NA	NA	NA	NA
SPR51090.1|2751232_2752183_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51091.1|2752377_2752827_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
SPR51092.1|2752823_2753774_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51093.1|2753884_2755333_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51094.1|2755447_2755693_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51095.1|2755832_2756783_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51096.1|2757027_2757741_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51097.1|2758385_2759024_-	DedA family integral membrane protein	NA	NA	NA	NA	NA
SPR51098.1|2759132_2760167_+	integral membrane protein	NA	NA	NA	NA	NA
SPR51099.1|2760163_2761114_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51100.1|2761254_2761521_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51101.1|2761529_2762054_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
SPR51102.1|2762057_2762327_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51103.1|2762525_2763587_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
SPR51104.1|2763670_2765305_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
SPR51105.1|2765306_2766161_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR51106.1|2766138_2767098_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR51107.1|2767101_2768613_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR51108.1|2768652_2769708_-	partial	NA	NA	NA	NA	NA
SPR51109.1|2770088_2770559_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51110.1|2770594_2771206_-	membrane transport protein	NA	NA	NA	NA	NA
SPR51111.1|2771236_2771860_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51112.1|2771940_2773473_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51113.1|2773507_2774725_-	membrane protein	NA	NA	NA	NA	NA
SPR51114.1|2774792_2775824_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
SPR51115.1|2775820_2776990_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51116.1|2776983_2777664_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51117.1|2777825_2778668_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51118.1|2778739_2779690_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 22
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	2844509	2895108	4160618	transposase	Moraxella_phage(16.67%)	39	NA	NA
SPR51173.1|2844509_2845460_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51174.1|2845456_2853118_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
SPR51175.1|2853358_2857405_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
SPR51176.1|2857762_2858299_+	integral membrane protein	NA	NA	NA	NA	NA
SPR51177.1|2858295_2859594_+	membrane permease	NA	NA	NA	NA	NA
SPR51178.1|2859673_2860702_+	exported protein	NA	NA	NA	NA	NA
SPR51179.1|2860962_2861913_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51180.1|2861909_2862860_-|transposase	transposase for IS1002	transposase	NA	NA	NA	NA
SPR51181.1|2863176_2863782_+	fimbrial protein	NA	NA	NA	NA	NA
SPR51182.1|2863835_2865149_-	phenylacetate-coenzyme A ligase	NA	NA	NA	NA	NA
SPR51183.1|2865223_2865694_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR51184.1|2865693_2866482_-	2-(12-epoxy-12-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
SPR51185.1|2866492_2868145_-	oxidoreductase	NA	NA	NA	NA	NA
SPR51186.1|2868232_2869183_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51187.1|2869169_2870333_-	PaaK subunit	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
SPR51188.1|2870344_2870851_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR51189.1|2870847_2871612_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
SPR51190.1|2871627_2871912_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
SPR51191.1|2871976_2872966_-	12-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
SPR51192.1|2873137_2874067_+	phenylacetic acid degradation operon negative regulatory protein	NA	NA	NA	NA	NA
SPR51193.1|2874038_2874725_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
SPR51194.1|2874758_2875304_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
SPR51195.1|2875348_2876614_+	peptidase M48	NA	NA	NA	NA	NA
SPR51196.1|2876610_2877513_+	putative ATP/GTP-binding protein	NA	NA	NA	NA	NA
SPR51197.1|2877810_2878698_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR51198.1|2878694_2879639_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR51199.1|2879733_2881251_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR51200.1|2881292_2882921_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR51201.1|2883028_2883910_+	LysR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR51202.1|2884989_2886447_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
SPR51203.1|2886563_2886908_-	partial	NA	NA	NA	NA	NA
SPR51204.1|2887022_2887397_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
SPR51205.1|2887393_2888344_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51206.1|2888470_2888809_-	nitrogen regulatory protein	NA	NA	NA	NA	NA
SPR51207.1|2888852_2890487_-	NAD synthetase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
SPR51208.1|2890525_2891872_-	putative membrane transport protein	NA	NA	NA	NA	NA
SPR51209.1|2891979_2893401_+	argininosuccinate lyase	NA	NA	NA	NA	NA
SPR51210.1|2893470_2894055_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51211.1|2894157_2895108_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 23
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	2915463	2968222	4160618	protease,transposase	uncultured_Mediterranean_phage(33.33%)	39	NA	NA
SPR51231.1|2915463_2916414_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51232.1|2916512_2917463_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51233.1|2917561_2918512_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51234.1|2918508_2919303_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51235.1|2919334_2920039_-	oxidoreductase	NA	NA	NA	NA	NA
SPR51236.1|2920113_2920914_-	SurF1-family protein	NA	NA	NA	NA	NA
SPR51237.1|2920910_2921318_-	cytochrome ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
SPR51238.1|2921314_2921956_-	cytochrome ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
SPR51239.1|2921948_2923970_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
SPR51240.1|2924006_2924498_-	partial	NA	NA	NA	NA	NA
SPR51241.1|2925209_2926541_+	membrane transport protein	NA	NA	NA	NA	NA
SPR51242.1|2926537_2927488_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51243.1|2928041_2929088_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
SPR51244.1|2929194_2929461_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51245.1|2930168_2930507_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SPR51246.1|2930532_2931258_+	ammonium transporter	NA	NA	NA	NA	NA
SPR51247.1|2931835_2933956_-	autotransporter BapC	NA	NA	NA	NA	NA
SPR51248.1|2935059_2935662_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51249.1|2935758_2937048_+	membrane transport protein	NA	NA	NA	NA	NA
SPR51250.1|2937105_2937837_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
SPR51251.1|2937833_2938637_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
SPR51252.1|2938633_2939722_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR51253.1|2939718_2940648_-	ABC transporter permease	NA	NA	NA	NA	NA
SPR51254.1|2940796_2941942_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR51255.1|2941963_2942914_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51256.1|2943244_2947066_-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
SPR51257.1|2947222_2947891_-	lipoprotein	NA	NA	NA	NA	NA
SPR51258.1|2947895_2949569_-	membrane protein	NA	NA	NA	NA	NA
SPR51259.1|2949587_2950784_-	exported protein	NA	NA	NA	NA	NA
SPR51260.1|2950911_2953227_-|protease	ATP-dependent Clp protease ATP-binding protein	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
SPR51261.1|2953282_2955451_-	penicillin-binding protein	NA	NA	NA	NA	NA
SPR51262.1|2955447_2960628_-	exported protein	NA	NA	NA	NA	NA
SPR51263.1|2960726_2961041_-|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
SPR51264.1|2961268_2961514_+	putative cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
SPR51265.1|2961635_2962127_+	exported protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
SPR51266.1|2962226_2963432_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
SPR51267.1|2963547_2964945_-	putative chloride-channel protein	NA	NA	NA	NA	NA
SPR51268.1|2965061_2965640_-	superoxide dismutase	NA	NA	NA	NA	NA
SPR51269.1|2967271_2968222_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 24
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	2977868	3027654	4160618	tRNA,transposase	Vibrio_phage(20.0%)	47	NA	NA
SPR51281.1|2977868_2978819_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51282.1|2978815_2979367_-	partial	NA	NA	NA	NA	NA
SPR51283.1|2980194_2981154_-	partial	NA	NA	NA	NA	NA
SPR51284.1|2981202_2982315_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR51285.1|2982371_2983322_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51286.1|2983530_2983752_-	lipoprotein	NA	NA	NA	NA	NA
SPR51287.1|2983965_2985372_-	threonine synthase	NA	NA	NA	NA	NA
SPR51288.1|2985368_2986673_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
SPR51289.1|2986669_2987857_-	aminotransferase	NA	NA	NA	NA	NA
SPR51290.1|2988073_2988526_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51291.1|2988528_2988993_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR51292.1|2989072_2990752_+	phosphate starvation protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
SPR51293.1|2990856_2991834_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
SPR51294.1|2991913_2992882_+	exported protein	NA	NA	NA	NA	NA
SPR51295.1|2992902_2994276_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
SPR51296.1|2994272_2995109_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51297.1|2995225_2995681_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
SPR51298.1|2995696_2995969_-	30s ribosomal protein s18	NA	NA	NA	NA	NA
SPR51299.1|2996061_2996310_-	primosomal replication protein n	NA	NA	NA	NA	NA
SPR51300.1|2996432_2996813_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
SPR51301.1|2997032_2997830_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51302.1|2997986_2999849_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
SPR51303.1|2999898_3000810_-	geranyltranstransferase	NA	NA	NA	NA	NA
SPR51304.1|3000814_3001081_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SPR51305.1|3001167_3002037_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR51306.1|3002172_3003138_+	exported protein	NA	NA	NA	NA	NA
SPR51307.1|3003281_3004232_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51308.1|3004357_3005368_+	membrane protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
SPR51309.1|3005515_3006667_+	iron-sulfur protein	NA	NA	NA	NA	NA
SPR51310.1|3006750_3007614_-	IS481 family	NA	NA	NA	NA	NA
SPR51311.1|3007809_3009282_-	cation transport protein	NA	NA	NA	NA	NA
SPR51312.1|3009292_3009703_-	putative thioesterase	NA	NA	NA	NA	NA
SPR51313.1|3009766_3010813_-	putative integral membrane protein	NA	NA	NA	NA	NA
SPR51314.1|3010919_3011798_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51315.1|3011811_3013008_-	hydrolase	NA	NA	NA	NA	NA
SPR51316.1|3013084_3014761_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
SPR51317.1|3014757_3015708_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51318.1|3015828_3016725_-	inositol monophosphatase	NA	NA	NA	NA	NA
SPR51319.1|3016882_3018070_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR51320.1|3018015_3018708_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34)oxidoreductase MnmC	tRNA	NA	NA	NA	NA
SPR51321.1|3019002_3021228_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51322.1|3021392_3022481_+	ABC transport protein ATP-binding component	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
SPR51323.1|3022437_3023091_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR51324.1|3023138_3023936_+	lipoprotein	NA	NA	NA	NA	NA
SPR51325.1|3024467_3025418_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51326.1|3025498_3026647_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SPR51327.1|3026703_3027654_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 25
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	3044648	3091084	4160618	transposase	Ostreococcus_lucimarinus_virus(16.67%)	45	NA	NA
SPR51346.1|3044648_3045599_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51347.1|3045702_3046266_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51348.1|3046426_3047167_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
SPR51349.1|3047484_3048108_+	IS3 family	NA	NA	NA	NA	NA
SPR51350.1|3048568_3049348_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51351.1|3049178_3050069_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51352.1|3050081_3051032_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51353.1|3051018_3052059_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51354.1|3052067_3052679_-	partial	NA	NA	NA	NA	NA
SPR51355.1|3052995_3053946_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51356.1|3053942_3054851_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51357.1|3054977_3055814_+	probable 3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
SPR51358.1|3056326_3057436_+	outer membrane porin protein	NA	NA	NA	NA	NA
SPR51359.1|3057497_3058448_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51360.1|3058640_3059423_-	short chain dehydrogenase	NA	NA	NA	NA	NA
SPR51361.1|3059436_3060186_-	short chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
SPR51362.1|3060213_3061560_-	membrane transport protein	NA	NA	NA	NA	NA
SPR51363.1|3061585_3062515_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51364.1|3062630_3063536_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51365.1|3063532_3064483_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51366.1|3064602_3065802_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
SPR51367.1|3065874_3066567_-	hypothetical protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
SPR51368.1|3066615_3069042_-	cation-transporting ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
SPR51369.1|3069086_3070037_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51370.1|3070253_3070622_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51371.1|3070908_3071835_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51372.1|3071878_3072889_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
SPR51373.1|3072885_3073320_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51374.1|3073552_3074434_+	exported protein	NA	NA	NA	NA	NA
SPR51375.1|3074445_3075234_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
SPR51376.1|3075243_3076026_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR51377.1|3076029_3077121_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51378.1|3077226_3078702_+	acid CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
SPR51379.1|3078843_3079392_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51380.1|3079407_3079869_-	putative AsnC-family transcriptional regulator	NA	NA	NA	NA	NA
SPR51381.1|3079969_3080959_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
SPR51382.1|3081257_3081959_+	riboflavin synthase subunit alpha	NA	NA	NA	NA	NA
SPR51383.1|3081997_3083371_-	amidase	NA	NA	NA	NA	NA
SPR51384.1|3085045_3085915_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51385.1|3086009_3086681_+	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51386.1|3086670_3087180_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51387.1|3087176_3088397_+	membrane transport protein	NA	NA	NA	NA	NA
SPR51388.1|3088344_3089247_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51389.1|3089435_3090041_+	partial	NA	NA	NA	NA	NA
SPR51390.1|3090133_3091084_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 26
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	3243945	3316705	4160618	tRNA,transposase	Xanthomonas_phage(14.29%)	60	NA	NA
SPR51528.1|3243945_3244896_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51529.1|3244904_3245453_+	lipid A palmitoyltransferase	NA	NA	NA	NA	NA
SPR51530.1|3245449_3246058_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51531.1|3246240_3246699_-	glutamate uptake regulatory protein	NA	NA	NA	NA	NA
SPR51532.1|3246717_3247974_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
SPR51533.1|3248029_3248842_-	oxidoreductase	NA	NA	NA	NA	NA
SPR51534.1|3248956_3249511_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR51535.1|3249520_3250510_-	membrane protein	NA	NA	NA	NA	NA
SPR51536.1|3250689_3251409_-	VOC family protein	NA	NA	NA	NA	NA
SPR51537.1|3251425_3254161_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
SPR51538.1|3254340_3255327_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
SPR51539.1|3255455_3255863_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51540.1|3255974_3256898_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
SPR51541.1|3257126_3258311_-	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR51542.1|3258499_3259726_-	cell division protein FtsA	NA	NA	NA	NA	NA
SPR51543.1|3259730_3260552_-	cell division protein FtsQ	NA	NA	NA	NA	NA
SPR51544.1|3260564_3261515_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SPR51545.1|3261511_3262918_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SPR51546.1|3262914_3263988_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR51547.1|3263984_3265178_-	lipid II flippase FtsW	NA	NA	NA	NA	NA
SPR51548.1|3265174_3266707_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR51549.1|3266703_3267873_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR51550.1|3267862_3270700_-	bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR51551.1|3270696_3272427_-	peptidoglycan synthetase	NA	NA	NA	NA	NA
SPR51552.1|3272423_3272702_-	cell division protein FtsL	NA	NA	NA	NA	NA
SPR51553.1|3272701_3273796_-	S-adenosyl-methyltransferase	NA	NA	NA	NA	NA
SPR51554.1|3273804_3274155_-	cell division protein MraZ	NA	NA	NA	NA	NA
SPR51555.1|3275035_3276844_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
SPR51556.1|3276883_3277948_-	dihydroorotase	NA	NA	NA	NA	NA
SPR51557.1|3277959_3279153_-	hydrolase	NA	NA	NA	NA	NA
SPR51558.1|3279302_3279581_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51559.1|3279909_3280275_-	putative membrane protein	NA	NA	NA	NA	NA
SPR51560.1|3287026_3287488_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
SPR51561.1|3287655_3288768_+	hemolysin	NA	NA	NA	NA	NA
SPR51562.1|3288835_3289396_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
SPR51563.1|3289419_3289752_-	cytochrome C552 precursor	NA	NA	NA	NA	NA
SPR51564.1|3289735_3291424_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
SPR51565.1|3291543_3292332_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
SPR51566.1|3292306_3292879_-	DUF541 domain-containing protein	NA	NA	NA	NA	NA
SPR51567.1|3293039_3293990_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51568.1|3294434_3294746_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51569.1|3294745_3295192_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51570.1|3295438_3296389_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51571.1|3296487_3297438_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51572.1|3297727_3298192_+	putative membrane protein	NA	NA	NA	NA	NA
SPR51573.1|3298206_3299712_+	membrane protein	NA	NA	NA	NA	NA
SPR51574.1|3299968_3301573_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR51575.1|3301700_3302534_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR51576.1|3302582_3302936_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
SPR51577.1|3302974_3303925_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51578.1|3304063_3304816_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
SPR51579.1|3305090_3306779_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
SPR51580.1|3306867_3308058_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51581.1|3308072_3309167_-|tRNA	tRNA CCA-pyrophosphorylase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
SPR51582.1|3309163_3311290_-	putative transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
SPR51583.1|3311302_3311983_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR51584.1|3312218_3313634_+	integral membrane transport protein	NA	NA	NA	NA	NA
SPR51585.1|3313635_3314655_+	aminohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
SPR51586.1|3314718_3315690_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR51587.1|3315754_3316705_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 27
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	3336404	3377569	4160618	protease,transposase	Erwinia_phage(50.0%)	38	NA	NA
SPR51608.1|3336404_3336944_+|protease	ATP-dependent protease subunit HsIV	protease	NA	NA	NA	NA
SPR51609.1|3336965_3338300_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
SPR51610.1|3338313_3338619_-	RND transporter	NA	NA	NA	NA	NA
SPR51611.1|3339043_3339625_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
SPR51612.1|3339706_3340657_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51613.1|3340873_3342448_+	phospholipase D	NA	NA	NA	NA	NA
SPR51614.1|3342454_3343564_-	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
SPR51615.1|3343575_3344256_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
SPR51616.1|3344277_3345033_-	molybdate-binding periplasmic protein precursor	NA	NA	NA	NA	NA
SPR51617.1|3345168_3346050_-	putative hydrolase	NA	NA	NA	NA	NA
SPR51618.1|3346140_3346722_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51619.1|3346814_3346937_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51620.1|3346982_3347282_-	exported protein	NA	NA	NA	NA	NA
SPR51621.1|3347433_3347913_-	membrane protein	NA	NA	NA	NA	NA
SPR51622.1|3347928_3348294_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51623.1|3348632_3350069_-	probable TonB-dependent receptor	NA	NA	NA	NA	NA
SPR51624.1|3350065_3350494_-	regulatory protein	NA	NA	NA	NA	NA
SPR51625.1|3350584_3351535_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51626.1|3351616_3351988_-	partial	NA	NA	NA	NA	NA
SPR51627.1|3352062_3352836_-	putative molybdate-binding periplasmic protein	NA	NA	NA	NA	NA
SPR51628.1|3352968_3353979_-	putative exported protein	NA	NA	NA	NA	NA
SPR51629.1|3354130_3355786_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
SPR51630.1|3355840_3356182_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51631.1|3356195_3357635_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51632.1|3357767_3358583_-	probable MerR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR51633.1|3358776_3359727_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51634.1|3359723_3360686_-	MFS transporter	NA	NA	NA	NA	NA
SPR51635.1|3361120_3362062_+	putative membrane protein	NA	NA	NA	NA	NA
SPR51636.1|3362288_3363029_+	putative TetR-family transcriptional regulator	NA	NA	NA	NA	NA
SPR51637.1|3363114_3364065_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51638.1|3364451_3364937_+	partial	NA	NA	NA	NA	NA
SPR51639.1|3364952_3365456_+	partial	NA	NA	NA	NA	NA
SPR51640.1|3365506_3367078_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SPR51641.1|3367410_3369264_+	autotransporter	NA	NA	NA	NA	NA
SPR51642.1|3369308_3371873_+	autotransporter	NA	NA	NA	NA	NA
SPR51643.1|3372291_3373242_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51644.1|3374391_3375822_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51645.1|3376618_3377569_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
>prophage 28
LS398604	Bordetella pertussis strain VS377 genome assembly, chromosome: I	4160618	3535997	3645475	4160618	integrase,tRNA,transposase	Acinetobacter_phage(21.05%)	104	3588507:3588524	3623308:3623325
SPR51781.1|3535997_3536948_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51782.1|3537046_3538180_-	partial	NA	NA	NA	NA	NA
SPR51783.1|3538704_3539694_+	partial	NA	NA	NA	NA	NA
SPR51784.1|3539690_3539849_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51785.1|3539869_3540658_-	indole-3-glycerol phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
SPR51786.1|3540654_3541686_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
SPR51787.1|3541704_3542268_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
SPR51788.1|3542323_3543844_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
SPR51789.1|3544107_3544812_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
SPR51790.1|3544819_3545548_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
SPR51791.1|3545662_3546037_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
SPR51792.1|3546079_3547369_+	membrane-bound transglycosylase	NA	NA	NA	NA	NA
SPR51793.1|3547365_3548535_+	ubiquinone biosynthesis hydroxylase family protein	NA	NA	NA	NA	NA
SPR51794.1|3548561_3549371_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR51795.1|3549430_3550366_+	2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
SPR51796.1|3550378_3551329_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51797.1|3551427_3552390_-|tRNA	tRNA 2-thiocytidine biosynthesis protein	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
SPR51798.1|3552421_3552781_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
SPR51799.1|3552905_3553808_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
SPR51800.1|3553809_3555576_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51801.1|3555616_3556393_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR51802.1|3556689_3557757_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51803.1|3557716_3558667_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51804.1|3559518_3559839_+	ABC transporter permease	NA	NA	NA	NA	NA
SPR51805.1|3559911_3560793_+	ATP synthase A chain	NA	NA	NA	NA	NA
SPR51806.1|3560909_3561152_+	ATP synthase c chain	NA	NA	NA	NA	NA
SPR51807.1|3561289_3561760_+	ATP synthase B chain	NA	NA	NA	NA	NA
SPR51808.1|3561772_3562312_+	ATP synthase delta chain	NA	NA	NA	NA	NA
SPR51809.1|3562346_3563888_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR51810.1|3563986_3564892_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
SPR51811.1|3564934_3566335_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR51812.1|3566344_3566767_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
SPR51813.1|3566949_3567834_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51814.1|3567909_3568986_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR51815.1|3569292_3571395_+	primosomal protein N'	NA	NA	NA	NA	NA
SPR51816.1|3571437_3573507_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
SPR51817.1|3573605_3574556_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51818.1|3574684_3575818_-	peptidase	NA	NA	NA	NA	NA
SPR51819.1|3575861_3576767_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51820.1|3576769_3578470_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
SPR51821.1|3578466_3579387_-	binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR51822.1|3579394_3580372_-	putative binding-protein-dependent transport permease	NA	NA	NA	NA	NA
SPR51823.1|3580430_3581390_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
SPR51824.1|3581513_3582434_-	partial	NA	NA	NA	NA	NA
SPR51825.1|3583439_3583676_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51826.1|3583802_3584666_-	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
SPR51827.1|3584754_3585576_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
SPR51828.1|3585655_3586393_-	putative enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR51829.1|3586389_3587361_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51830.1|3587534_3588158_+	TetR family transcriptional repressor	NA	NA	NA	NA	NA
SPR51831.1|3588202_3589351_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
3588507:3588524	attL	CCGACGACCAGCGCCAGC	NA	NA	NA	NA
SPR51832.1|3589334_3590090_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51833.1|3590771_3591593_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPR51834.1|3591674_3592625_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51835.1|3592965_3593916_+|transposase	transposase IS1002 family	transposase	NA	NA	NA	NA
SPR51836.1|3594014_3594965_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51837.1|3595261_3595759_+	blue copper protein	NA	NA	NA	NA	NA
SPR51838.1|3595801_3597577_+	copper resitance protein	NA	NA	NA	NA	NA
SPR51839.1|3597584_3598451_+	copper resistance protein	NA	NA	NA	NA	NA
SPR51840.1|3598457_3599183_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
SPR51841.1|3599757_3600525_+	hypothetical protein	NA	NA	NA	NA	NA
SPR51842.1|3600361_3601132_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
SPR51843.1|3601445_3602036_+	cysteine dioxygenase	NA	NA	NA	NA	NA
SPR51844.1|3602069_3603398_-	amidase	NA	NA	NA	NA	NA
SPR51845.1|3603472_3604618_-	binding-protein-dependent transport protein	NA	NA	NA	NA	NA
SPR51846.1|3604729_3605728_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR51847.1|3605693_3606125_+	membrane protein	NA	NA	NA	NA	NA
SPR51848.1|3606259_3607168_+	MFS transporter	NA	NA	NA	NA	NA
SPR51849.1|3607641_3608526_+	membrane protein	NA	NA	NA	NA	NA
SPR51850.1|3608522_3609728_-	phospholipase	NA	NA	NA	NA	NA
SPR51851.1|3609724_3610585_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
SPR51852.1|3610697_3612488_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
SPR51853.1|3612528_3613179_-	putative membrane protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
SPR51854.1|3613194_3613503_-	hypothetical protein	NA	NA	NA	NA	NA
SPR51855.1|3613668_3614955_-	membrane protein	NA	NA	NA	NA	NA
SPR51856.1|3615081_3616332_-	partial	NA	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
SPR51857.1|3616388_3617339_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51858.1|3617437_3618388_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51859.1|3618469_3620158_-	partial	NA	NA	NA	NA	NA
SPR51860.1|3620339_3621554_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
SPR51861.1|3621659_3622649_+	conserved hypothetical protein	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
SPR51862.1|3622645_3623254_+	probable hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
SPR51863.1|3623266_3623896_+	exported protein	NA	NA	NA	NA	NA
3623308:3623325	attR	GCTGGCGCTGGTCGTCGG	NA	NA	NA	NA
SPR51864.1|3623892_3624513_+	exported protein	NA	NA	NA	NA	NA
SPR51865.1|3624544_3625336_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
SPR51866.1|3625689_3625911_+	partial	NA	NA	NA	NA	NA
SPR51867.1|3626178_3626643_+	nitrogen regulatory IIA protein	NA	NA	NA	NA	NA
SPR51868.1|3626661_3627588_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
SPR51869.1|3627641_3628928_-	cytochrome C	NA	NA	NA	NA	NA
SPR51870.1|3628976_3629843_-	cytochrome C	NA	NA	NA	NA	NA
SPR51871.1|3629858_3630731_+	conserved hypothetical protein	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
SPR51872.1|3630727_3631678_+	lipoprotein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
SPR51873.1|3631776_3632727_+|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
SPR51874.1|3633188_3633608_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPR51875.1|3633594_3635976_-	dehydrogenase/oxidase	NA	NA	NA	NA	NA
SPR51876.1|3635968_3637345_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
SPR51877.1|3637360_3638356_-	45-dihydroxyphthalate decarboxylase	NA	NA	NA	NA	NA
SPR51878.1|3638374_3639367_-	exported protein	NA	NA	NA	NA	NA
SPR51879.1|3639607_3640168_-	probable flavoprotein	NA	NA	NA	NA	NA
SPR51880.1|3640172_3640499_-	glutaredoxin	NA	NA	NA	NA	NA
SPR51881.1|3640535_3641348_-	release factor glutamine methyltransferase	NA	NA	NA	NA	NA
SPR51882.1|3641358_3642441_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
SPR51883.1|3642527_3643802_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
SPR51884.1|3644524_3645475_-|transposase	transposase IS481 family	transposase	NA	NA	NA	NA
