The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	8527	52641	2469803	transposase	Streptococcus_phage(16.67%)	46	NA	NA
SPR02194.1|8527_8830_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02200.1|9344_11144_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02203.1|11914_13204_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	29.9	4.0e-44
SPR02207.1|13224_14187_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	43.4	4.3e-59
SPR02214.1|14316_15240_-	permease	NA	NA	NA	NA	NA
SPR02221.1|15416_16754_-	translocation protein TolB	NA	NA	NA	NA	NA
SPR02228.1|17093_18521_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.3	1.6e-38
SPR02236.1|18612_19416_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR02242.1|19590_20199_+	Type surface antigen 22	NA	NA	NA	NA	NA
SPR02249.1|20312_20516_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02254.1|20466_20937_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02259.1|21015_21492_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02265.1|22172_22823_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	39.1	7.0e-29
SPR02287.1|22825_23047_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02292.1|23061_23763_-	histidine kinase	NA	NA	NA	NA	NA
SPR02298.1|23827_24106_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02302.1|24472_24787_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	34.6	7.8e-10
SPR02308.1|24773_25025_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02314.1|25060_25435_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02325.1|25480_25651_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR02331.1|25718_26633_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.5	9.7e-85
SPR02337.1|26754_27180_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR02344.1|27495_27828_-	DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	50.0	1.0e-23
SPR02349.1|28177_29749_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02353.1|29757_31194_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	8.7e-72
SPR02357.1|31433_32063_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	1.2e-06
SPR02362.1|32109_32616_+	membrane protein	NA	NA	NA	NA	NA
SPR02366.1|32619_32760_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR02369.1|32997_33201_-	membrane protein	NA	NA	NA	NA	NA
SPR02372.1|33564_34440_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02375.1|34972_35764_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02378.1|36591_36876_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02381.1|37070_37466_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02385.1|37480_39259_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	9.5e-28
SPR02390.1|39308_40061_-	UMP kinase	NA	NA	NA	NA	NA
SPR02394.1|40289_41381_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR02399.1|41370_42780_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR02404.1|42776_44246_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
SPR02410.1|44232_45984_-	penicillin-binding protein	NA	NA	NA	NA	NA
SPR02412.1|46183_46444_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02417.1|46484_47423_-	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR02421.1|47491_48625_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	29.1	2.1e-28
SPR02423.1|48710_50639_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	46.5	5.9e-140
SPR02426.1|51020_51308_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
SPR02431.1|51515_52313_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
SPR02435.1|52512_52641_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 2
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	63687	110291	2469803	transposase,integrase	Pseudomonas_phage(28.57%)	49	61736:61758	99008:99030
61736:61758	attL	AAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR14202.1|63687_63831_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14203.1|63837_64197_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14204.1|64223_64661_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14205.1|64881_65088_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14206.1|65474_65759_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14207.1|66004_66292_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	31.2	1.1e-05
SPR14208.1|66377_66599_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14209.1|66799_67123_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14210.1|67122_67542_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR14211.1|67522_67675_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14212.1|67671_67878_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14213.1|67874_68600_+	conjugative transfer protein TraC	NA	NA	NA	NA	NA
SPR14214.1|68691_69228_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR14215.1|69141_70131_-	ankyrin repeat-containing protein	NA	Q6VZ29	Canarypox_virus	29.7	9.1e-12
SPR14216.1|70344_70872_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14217.1|70894_71278_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR14218.1|71274_72969_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR14219.1|72980_73280_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14220.1|73246_73663_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14221.1|73659_74553_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14222.1|74506_74962_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14223.1|74961_76710_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14224.1|76681_76858_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14225.1|76844_76979_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14226.1|76984_78739_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14227.1|78748_79768_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14228.1|79767_81774_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14229.1|82040_83603_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14230.1|83648_84899_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14231.1|85581_86817_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	37.7	2.3e-65
SPR14232.1|86919_87297_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR14233.1|87507_87963_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14234.1|88264_89290_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR14235.1|89792_89912_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR14236.1|90325_93763_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR14237.1|95182_95476_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14238.1|96933_98082_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR14239.1|99053_99443_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
99008:99030	attR	TATAGTCATTTACAATGAAGTTT	NA	NA	NA	NA
SPR14240.1|99384_99948_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR14241.1|100198_100834_+	transporter	NA	NA	NA	NA	NA
SPR14242.1|100949_101696_+	Thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA	NA
SPR14243.1|102715_103516_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14244.1|103475_104276_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14245.1|104284_105721_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.6e-70
SPR14246.1|105960_106590_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	2.1e-06
SPR14247.1|106636_107140_+	membrane protein	NA	NA	NA	NA	NA
SPR14248.1|107820_108603_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14249.1|108703_109282_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.4e-06
SPR14250.1|109400_110291_+|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	62.2	3.5e-87
>prophage 3
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	115743	159294	2469803	transposase,integrase	Wolbachia_phage(22.22%)	52	138062:138075	159296:159309
SPR14261.1|115743_116202_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14262.1|116301_116565_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14263.1|117280_118975_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR14264.1|119071_119215_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14265.1|119298_119754_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14266.1|120033_121017_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14267.1|121264_121528_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR14268.1|121595_122570_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.4e-84
SPR14269.1|122691_122910_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR14270.1|122914_123268_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14271.1|123368_124226_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14272.1|124200_124977_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14273.1|125668_127537_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14274.1|128185_128815_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR14275.1|128818_129367_-	membrane protein	NA	NA	NA	NA	NA
SPR14276.1|129469_130114_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	31.7	1.1e-13
SPR14277.1|130125_130701_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14278.1|130936_131728_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	44.4	9.4e-52
SPR14279.1|131908_132373_-	replicative DNA helicase	NA	A0A222ZRG2	Mycobacterium_phage	29.3	1.4e-10
SPR14280.1|132381_134094_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14281.1|134654_134909_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR14282.1|135176_135287_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR14283.1|135517_136480_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR14284.1|136784_137681_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR14285.1|137790_138351_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	39.0	2.9e-23
138062:138075	attL	ATTTCAGTATTTAT	NA	NA	NA	NA
SPR14286.1|138362_138605_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14287.1|138562_139096_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14288.1|139147_139843_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14289.1|140018_140456_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14290.1|140467_140842_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14291.1|140862_141069_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14292.1|141044_141272_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14293.1|141405_141603_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14294.1|141833_142406_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14295.1|142443_143088_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	28.1	1.5e-07
SPR14296.1|143135_143684_+	membrane protein	NA	NA	NA	NA	NA
SPR14297.1|143687_144089_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR14298.1|144945_145662_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14299.1|146012_146741_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14300.1|146762_147059_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14301.1|147251_147620_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14302.1|147720_148296_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14303.1|148417_149368_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	2.9e-84
SPR14304.1|149435_149882_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14305.1|150168_152613_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14306.1|152731_154243_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14307.1|154256_154808_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14308.1|154859_155867_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14309.1|155876_156086_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14310.1|156790_156928_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14311.1|157339_157606_+	Uncharacterised protein	NA	A0A0U4J920	Pseudomonas_phage	48.3	4.4e-14
SPR14312.1|158094_159294_+|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	1.3e-25
159296:159309	attR	ATAAATACTGAAAT	NA	NA	NA	NA
>prophage 4
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	170143	213297	2469803	transposase,integrase	Cryptophlebia_leucotreta_granulosis_virus(16.67%)	46	204403:204430	213716:213743
SPR14330.1|170143_171106_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR14331.1|171261_172152_+	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR14332.1|172346_173063_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14333.1|173059_173689_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14334.1|173738_173915_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14335.1|173927_174362_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14336.1|174361_176944_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14337.1|177040_178186_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR14338.1|178191_179949_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14339.1|179958_180927_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14340.1|180911_181463_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14341.1|181476_183585_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14342.1|183848_186686_-	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	23.3	7.4e-06
SPR14343.1|186965_187421_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14344.1|187745_189155_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR14345.1|189302_189566_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR14346.1|189633_190668_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	2.4e-84
SPR14347.1|190792_191398_-	hydrolase	NA	NA	NA	NA	NA
SPR14348.1|191439_191934_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14349.1|191952_192885_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14350.1|192901_193228_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14351.1|193308_193479_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14352.1|193608_194310_-	histidine kinase	NA	NA	NA	NA	NA
SPR14353.1|194374_194653_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14354.1|195019_195715_+	DNA methyltransferase	NA	A0A0H3UYZ1	Geobacillus_virus	25.2	8.3e-12
SPR14355.1|196084_196621_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR14356.1|196598_196769_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR14357.1|196758_198090_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	5.6e-65
SPR14358.1|198098_199814_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14359.1|199946_200087_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14360.1|200704_201085_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	8.9e-08
SPR14361.1|201081_202644_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR14362.1|203850_204039_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14363.1|204102_204207_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14364.1|204218_204422_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
204403:204430	attL	ATAATTTTGAACTACCTTAACCAGTTTC	NA	NA	NA	NA
SPR14365.1|204529_204631_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14366.1|205010_206213_-	aspartate aminotransferase	NA	NA	NA	NA	NA
SPR14367.1|206320_207358_+	Ubiquinone biosynthesis O-methyltransferase	NA	NA	NA	NA	NA
SPR14368.1|207417_208251_+	ABC transporter	NA	NA	NA	NA	NA
SPR14369.1|208253_208838_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14370.1|208865_210086_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR14371.1|210107_210620_+	Uncharacterised protein	NA	A0A0K0KVI2	Prochlorococcus_phage	38.3	1.0e-19
SPR14372.1|210679_211405_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SPR14373.1|211780_211909_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14374.1|211962_212598_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14375.1|213108_213297_-|integrase	integrase	integrase	NA	NA	NA	NA
213716:213743	attR	GAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 6
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	349172	435633	2469803	transposase,integrase	Wolbachia_phage(15.38%)	96	367736:367753	427818:427834
SPR14519.1|349172_350216_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14520.1|350267_350819_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14521.1|350832_352932_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14522.1|353197_353965_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14523.1|354021_356034_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14524.1|356312_356768_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14525.1|356826_357627_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14526.1|357702_358278_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14527.1|358378_359236_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14528.1|359210_359987_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14529.1|360353_361112_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.3	9.4e-17
SPR14530.1|361167_361719_-	membrane protein	NA	NA	NA	NA	NA
SPR14531.1|361765_362410_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	28.4	3.2e-10
SPR14532.1|362444_362840_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14533.1|362876_363020_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14534.1|364062_365880_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.3	6.0e-187
SPR14535.1|365902_366904_+	ribonucleotide-diphosphate reductase subunit beta	NA	M1I8A4	Pelagibacter_phage	53.5	1.7e-98
SPR14536.1|367394_367970_+	Uncharacterised protein	NA	NA	NA	NA	NA
367736:367753	attL	CATTAAATACAATCTTAA	NA	NA	NA	NA
SPR14537.1|368321_368570_+|integrase	integrase	integrase	NA	NA	NA	NA
367736:367753	attL	CATTAAATACAATCTTAA	NA	NA	NA	NA
SPR14538.1|368704_369955_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SPR14539.1|370256_371153_-	ankyrin repeat-containing protein	NA	Q6VZ43	Canarypox_virus	30.9	1.1e-08
SPR14540.1|371926_372577_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14541.1|372626_372959_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR14542.1|373198_373780_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14543.1|373796_374159_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14544.1|374265_374478_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14545.1|374871_375834_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.0e-84
SPR14546.1|376005_376158_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14547.1|376214_376475_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	59.7	2.7e-16
SPR14548.1|376455_377067_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14549.1|377105_377426_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR14550.1|379181_380279_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
SPR14551.1|380953_382711_+	repeat-containing protein D	NA	NA	NA	NA	NA
SPR14552.1|383702_383864_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14553.1|383817_384192_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14554.1|384151_384373_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14555.1|384483_385074_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14556.1|385138_385354_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14557.1|385435_385582_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14558.1|386022_386916_+	lipase LipB	NA	A0A2I7SAF7	Vibrio_phage	28.3	8.5e-09
SPR14559.1|387309_387426_-|integrase	integrase	integrase	NA	NA	NA	NA
387211:387228	attR	CATTAAATACAATCTTAA	NA	NA	NA	NA
SPR14560.1|387488_387743_-|integrase	integrase	integrase	NA	NA	NA	NA
387211:387228	attR	CATTAAATACAATCTTAA	NA	NA	NA	NA
SPR14561.1|388743_389001_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14562.1|389088_389307_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR14563.1|389664_390528_-	ankyrin repeat-containing protein 19	NA	A0A1V0QGR0	Shearwaterpox_virus	42.5	6.9e-08
SPR14564.1|390545_390710_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR14565.1|390941_391088_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14566.1|391136_391523_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14567.1|391646_392315_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14568.1|392530_392674_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14569.1|392667_392982_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14570.1|392953_393196_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14571.1|393217_393646_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14572.1|393698_394022_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14573.1|394702_395926_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	38.4	1.8e-65
SPR14574.1|396040_396490_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR14575.1|396642_396804_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
SPR14576.1|396800_398627_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14577.1|399076_399217_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR14578.1|399316_399562_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR14579.1|399569_399698_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14580.1|399694_399811_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14581.1|399822_400197_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14582.1|400800_401025_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
SPR14583.1|401068_401665_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
SPR14584.1|401791_402541_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR14585.1|402639_405357_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	35.3	6.2e-103
SPR14586.1|405390_406671_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.3	5.1e-108
SPR14587.1|407423_409916_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14588.1|410154_410694_-	ribonuclease P	NA	NA	NA	NA	NA
SPR14589.1|410694_410877_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
SPR14590.1|411608_412403_+	cytochrome c	NA	NA	NA	NA	NA
SPR14591.1|412397_412532_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14592.1|412899_413655_-	ribonuclease PH	NA	NA	NA	NA	NA
SPR14593.1|413783_414380_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
SPR14594.1|414904_415069_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR14595.1|415506_416826_+|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.7	3.5e-11
SPR14596.1|416893_417217_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14597.1|417216_417768_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14598.1|417764_418253_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14599.1|418659_418995_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14600.1|419033_420362_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14601.1|420361_420682_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14602.1|420662_423155_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR14603.1|423151_423811_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR14604.1|423901_424075_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14605.1|424108_425053_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14606.1|425075_425459_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR14607.1|425455_427150_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR14608.1|427146_427845_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14609.1|427841_429143_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14610.1|429142_431038_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14611.1|431095_431776_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14612.1|431788_432928_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR14613.1|432933_434688_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14614.1|434697_435633_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	444618	498261	2469803	tRNA,transposase	Streptococcus_phage(26.67%)	51	NA	NA
SPR14620.1|444618_445689_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	2.5e-84
SPR14621.1|445810_446398_-	hydrolase	NA	NA	NA	NA	NA
SPR14622.1|446439_446934_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14623.1|446952_447888_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14624.1|447904_448483_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14625.1|448612_449314_-	histidine kinase	NA	NA	NA	NA	NA
SPR14626.1|449378_449657_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14627.1|450023_450833_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
SPR14628.1|450836_451385_-	membrane protein	NA	NA	NA	NA	NA
SPR14629.1|451432_452077_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	9.8e-07
SPR14630.1|452111_452687_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	1.6e-05
SPR14631.1|452920_454369_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.6	2.0e-71
SPR14632.1|454377_456093_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14633.1|456248_456575_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR14634.1|456846_456942_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14635.1|456951_457098_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14636.1|457303_457936_-	3'-5' exonuclease	NA	NA	NA	NA	NA
SPR14637.1|457942_458242_-	Cell division protein FtsB	NA	NA	NA	NA	NA
SPR14638.1|458249_458900_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SPR14639.1|458902_459598_-	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	43.0	1.0e-17
SPR14640.1|459773_461579_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.3	2.4e-42
SPR14641.1|461897_465602_-	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	30.7	5.8e-128
SPR14642.1|465591_468156_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9L2Y7	Tupanvirus	50.7	1.2e-246
SPR14643.1|468187_469063_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SPR14644.1|469332_470094_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14645.1|470445_471444_+	peptidase S66	NA	NA	NA	NA	NA
SPR14646.1|472341_472716_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14647.1|472669_472996_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14648.1|473242_474442_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14649.1|475057_476623_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14650.1|476631_478080_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	3.9e-72
SPR14651.1|478314_478890_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	7.4e-06
SPR14652.1|478924_479569_+	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	27.6	3.7e-06
SPR14653.1|479616_480120_+	membrane protein	NA	NA	NA	NA	NA
SPR14654.1|480123_480933_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR14655.1|481306_481585_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14656.1|481649_482351_+	histidine kinase	NA	NA	NA	NA	NA
SPR14657.1|482480_483059_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14658.1|483209_483923_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14659.1|484026_484521_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14660.1|484562_485150_+	hydrolase	NA	NA	NA	NA	NA
SPR14661.1|485271_486282_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	6.3e-85
SPR14662.1|486389_486602_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14663.1|486882_487956_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR14664.1|488277_488733_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14665.1|488942_489320_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR14666.1|489422_490658_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	37.7	3.0e-65
SPR14667.1|491340_494160_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14668.1|494423_496529_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14669.1|496542_497094_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14670.1|497145_498261_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	517927	568427	2469803	tRNA,transposase,integrase	Mannheimia_phage(25.0%)	49	529287:529317	556785:556815
SPR14690.1|517927_519148_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.1	2.0e-16
SPR14691.1|519281_519482_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14692.1|519599_520295_-	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
SPR14693.1|520506_520983_-	RDD family protein	NA	NA	NA	NA	NA
SPR14694.1|522144_524361_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14695.1|524943_525111_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14696.1|525264_525621_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14697.1|525632_525806_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14698.1|525982_528856_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.6	2.2e-308
SPR14699.1|529255_530065_+|transposase	transposase	transposase	NA	NA	NA	NA
529287:529317	attL	TAATAGATAATTTTTGCAAGATATATCAAGA	NA	NA	NA	NA
SPR14700.1|530176_530647_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14701.1|530643_530805_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14702.1|530805_531171_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14703.1|532152_532356_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14704.1|534476_534746_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR14705.1|534786_535113_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR14706.1|535252_535921_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR14707.1|536025_536775_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
SPR14708.1|536995_538366_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	33.2	2.6e-41
SPR14709.1|538424_539900_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14710.1|539991_542958_-	ScaD autotransporter protein	NA	NA	NA	NA	NA
SPR14711.1|544016_545696_+	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	39.1	4.9e-42
SPR14712.1|545707_546268_+	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SPR14713.1|546536_547250_+	zinc ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	1.5e-16
SPR14714.1|547230_548019_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
SPR14715.1|548787_549084_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR14716.1|550636_550726_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14717.1|550985_551384_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14718.1|551371_551749_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14719.1|551911_552505_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	31.4	5.3e-15
SPR14720.1|552549_552726_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14721.1|552853_553147_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14722.1|553374_553731_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14723.1|553742_554087_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14724.1|555165_555300_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR14725.1|555733_556282_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR14726.1|557724_558066_-	Uncharacterised protein	NA	NA	NA	NA	NA
556785:556815	attR	TCTTGATATATCTTGCAAAAATTATCTATTA	NA	NA	NA	NA
SPR14727.1|558206_559043_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR14728.1|559216_560566_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR14729.1|560857_561775_+	peptidase S49	NA	Q9JMP1	Wolbachia_phage	27.8	5.3e-14
SPR14730.1|561878_562262_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14731.1|562886_563024_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14732.1|563150_563495_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR14733.1|563746_563920_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14734.1|564509_565751_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	36.1	1.9e-67
SPR14735.1|566410_566581_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR14736.1|566995_567337_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14737.1|568074_568179_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14738.1|568190_568427_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 9
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	575921	623901	2469803	tRNA,transposase,integrase	Mycobacterium_phage(16.67%)	55	566474:566513	628726:628765
566474:566513	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR14741.1|575921_576056_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14742.1|576610_576967_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14743.1|576993_577221_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14744.1|577265_577445_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14745.1|577583_577793_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14746.1|577957_578533_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR14747.1|579528_579696_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SPR14748.1|579828_580050_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14749.1|580325_580550_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SPR14750.1|580559_580847_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
SPR14751.1|581090_581963_+	EamA family transporter	NA	NA	NA	NA	NA
SPR14752.1|581980_583237_+	MFS transporter	NA	NA	NA	NA	NA
SPR14753.1|583820_584585_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14754.1|584857_586069_-	penicillin-binding protein 4	NA	G3M511	Mycobacterium_phage	26.9	1.0e-09
SPR14755.1|586094_587888_-|tRNA	aspartate--tRNA(Asp/Asn) ligase	tRNA	NA	NA	NA	NA
SPR14756.1|588166_592357_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.0	1.3e-70
SPR14757.1|592471_596596_-	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0K9	Chrysochromulina_ericina_virus	30.7	3.5e-25
SPR14758.1|596911_597301_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
SPR14759.1|597322_597832_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
SPR14760.1|597835_598582_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
SPR14761.1|598585_599032_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
SPR14762.1|599071_599608_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA	NA
SPR14763.1|599649_599850_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
SPR14764.1|600104_601289_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	26.2	2.5e-32
SPR14765.1|601462_602227_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SPR14766.1|602391_603003_-	recombination protein RecR	NA	NA	NA	NA	NA
SPR14767.1|603091_603628_-	septation protein A	NA	NA	NA	NA	NA
SPR14768.1|603631_604471_-	iron permease	NA	NA	NA	NA	NA
SPR14769.1|604499_604865_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14770.1|605329_606562_-	EAL domain-containing protein	NA	NA	NA	NA	NA
SPR14771.1|606747_607479_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	1.1e-27
SPR14772.1|607471_608089_-	arginine ABC transporter permease	NA	NA	NA	NA	NA
SPR14773.1|608757_608949_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR14774.1|608956_609220_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14775.1|609748_611002_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14776.1|611174_611417_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR14777.1|611816_612170_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14778.1|612264_612492_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14779.1|612469_612577_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14780.1|613415_613607_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14781.1|614249_614918_+	glutathione S-transferase	NA	NA	NA	NA	NA
SPR14782.1|615055_615262_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14783.1|615174_615375_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14784.1|615612_616089_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
SPR14785.1|616112_617384_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR14786.1|617386_617872_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
SPR14787.1|617876_618239_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA	NA
SPR14788.1|618210_618717_-	ribonuclease H	NA	A0A1P8DJF0	Virus_Rctr71	47.7	1.9e-29
SPR14789.1|618716_619244_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14790.1|619372_620197_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR14791.1|620326_620647_-	ferredoxin	NA	NA	NA	NA	NA
SPR14792.1|620651_621362_-	heme exporter protein C	NA	NA	NA	NA	NA
SPR14793.1|621354_621969_-	Laccase domain protein YfiH	NA	NA	NA	NA	NA
SPR14794.1|622063_622915_+	glutamine synthetase	NA	NA	NA	NA	NA
SPR14795.1|623418_623901_-|transposase	transposase	transposase	NA	NA	NA	NA
628726:628765	attR	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
>prophage 10
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	632390	686138	2469803	tRNA,transposase,integrase	Salicola_phage(22.22%)	52	645613:645636	676002:676025
SPR14807.1|632390_632711_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14808.1|633337_633817_+	transcription elongation factor GreA	NA	A0A248SJQ8	Salicola_phage	27.7	1.2e-06
SPR14809.1|633863_634763_+	RNA polymerase factor sigma-32	NA	A0A248SJA5	Salicola_phage	29.8	6.7e-30
SPR14810.1|635361_635469_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14811.1|635961_636504_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14812.1|636786_636957_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14813.1|638402_638705_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14814.1|638716_639073_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14815.1|639588_641073_-	ankyrin repeat-containing protein 13	NA	A0A1V0S7Q4	Shearwaterpox_virus	29.8	5.7e-10
SPR14816.1|641355_643521_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR14817.1|643517_644177_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR14818.1|644260_644464_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14819.1|644464_645442_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14820.1|645464_645596_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
645613:645636	attL	GTAATAATAAAAAAAATAAAGAAT	NA	NA	NA	NA
SPR14821.1|645855_647082_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR14822.1|647185_647632_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	43.2	7.9e-24
SPR14823.1|647594_647747_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14824.1|647758_648475_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14825.1|648471_649101_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14826.1|649289_649775_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14827.1|649774_650401_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14828.1|651556_654994_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR14829.1|656152_657712_-	isocitrate dehydrogenase	NA	NA	NA	NA	NA
SPR14830.1|657884_658781_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
SPR14831.1|659092_660313_+	proline/betaine transporter	NA	NA	NA	NA	NA
SPR14832.1|661383_663051_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR14833.1|663604_665473_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14834.1|666038_667052_-	threonine dehydratase	NA	NA	NA	NA	NA
SPR14835.1|667168_669541_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.0	6.1e-171
SPR14836.1|669604_670255_-	Chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
SPR14837.1|670385_671132_-	amidophosphoribosyltransferase	NA	NA	NA	NA	NA
SPR14838.1|671115_672153_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR14839.1|672222_672840_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.5	1.1e-23
SPR14840.1|673405_673651_+	Uncharacterised protein	NA	B0VK10	Azospirillum_phage	46.7	5.0e-12
SPR14841.1|674144_674306_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14842.1|674322_674433_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14843.1|674693_675038_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14844.1|674994_675282_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	34.1	8.7e-08
SPR14845.1|675631_675868_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14846.1|676238_677339_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
676002:676025	attR	GTAATAATAAAAAAAATAAAGAAT	NA	NA	NA	NA
SPR14847.1|677644_678292_-	guanosine polyphosphate pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.7	1.2e-07
SPR14848.1|678475_678685_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14849.1|678653_678779_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14850.1|678838_679258_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14851.1|680348_680993_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14852.1|681093_681945_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR14853.1|682035_682476_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14854.1|682485_683733_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14855.1|683734_684064_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR14856.1|684044_684443_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14857.1|684492_685122_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14858.1|685262_686138_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	689363	788077	2469803	tRNA,transposase,integrase	Wolbachia_phage(17.65%)	112	690179:690196	749095:749112
SPR14863.1|689363_690206_+|integrase	integrase	integrase	I6R9B6	Salmonella_phage	24.7	1.8e-05
690179:690196	attL	AAAAATATGGTGTATACC	NA	NA	NA	NA
SPR14864.1|690374_690626_-	conjugative transfer protein	NA	NA	NA	NA	NA
690179:690196	attL	AAAAATATGGTGTATACC	NA	NA	NA	NA
SPR14865.1|690772_690952_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14866.1|691047_691248_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14867.1|691244_691397_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14868.1|691377_691797_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR14869.1|691796_692093_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14870.1|692184_692841_-|integrase	integrase	integrase	A0A1P8CWW9	Bacillus_phage	27.4	1.9e-05
SPR14871.1|693156_693525_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR14872.1|693956_694058_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14873.1|694408_695125_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14874.1|696004_696511_-	membrane protein	NA	NA	NA	NA	NA
SPR14875.1|696557_697202_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	25.0	1.3e-06
SPR14876.1|697236_697809_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14877.1|698039_698612_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14878.1|698613_699135_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14879.1|699176_699752_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14880.1|699980_700919_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	4.5e-85
SPR14881.1|701498_702071_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR14882.1|702027_702453_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR14883.1|702591_703179_-	hydrolase	NA	NA	NA	NA	NA
SPR14884.1|703220_703715_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14885.1|703733_704417_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14886.1|704417_704669_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14887.1|704685_705264_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14888.1|705434_705611_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR14889.1|705977_706673_+	DNA methyltransferase	NA	A0A0H3UYZ1	Geobacillus_virus	25.2	8.3e-12
SPR14890.1|707042_707579_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR14891.1|707556_707727_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR14892.1|707716_709048_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.3	5.6e-65
SPR14893.1|709056_710772_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14894.1|710999_711254_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR14895.1|711814_712954_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14896.1|712955_713528_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14897.1|713757_714330_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14898.1|714364_715009_+	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	27.6	3.7e-06
SPR14899.1|715056_715560_+	membrane protein	NA	NA	NA	NA	NA
SPR14900.1|715563_716373_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR14901.1|716758_717535_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14902.1|717509_718367_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14903.1|718467_719043_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14904.1|719164_720175_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.1e-84
SPR14905.1|720244_720700_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14906.1|720909_722625_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR14907.1|723306_724347_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14908.1|724388_726164_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR14909.1|726282_728364_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR14910.1|728415_729435_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR14911.1|729444_731199_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14912.1|731204_731339_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14913.1|731325_733221_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR14914.1|733220_733700_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14915.1|733894_734524_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR14916.1|734520_735204_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR14917.1|735215_736910_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR14918.1|737049_737406_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR14919.1|737422_737587_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR14920.1|738357_738906_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	44.0	2.1e-34
SPR14921.1|738966_739122_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR14922.1|739959_740130_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14923.1|740474_740615_+|integrase	integrase	integrase	NA	NA	NA	NA
740585:740602	attR	AAAAATATGGTGTATACC	NA	NA	NA	NA
SPR14924.1|740590_740740_+|integrase	integrase	integrase	NA	NA	NA	NA
740585:740602	attR	AAAAATATGGTGTATACC	NA	NA	NA	NA
SPR14925.1|740834_741041_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR14926.1|741141_741465_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14927.1|742451_746996_-	ScaA autotransporter protein	NA	NA	NA	NA	NA
SPR14928.1|747648_748059_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14929.1|748033_748390_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14930.1|748516_748789_-	Multidrug resistance protein MdtL	NA	NA	NA	NA	NA
SPR14931.1|748799_749051_-	MFS transporter	NA	NA	NA	NA	NA
SPR14932.1|749350_749698_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14933.1|749816_749990_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14934.1|749986_750862_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14935.1|751411_752152_+	S26 family signal peptidase	NA	NA	NA	NA	NA
SPR14936.1|752207_752948_+	ribonuclease III	NA	M1HK80	Acanthocystis_turfacea_Chlorella_virus	30.5	1.8e-20
SPR14937.1|753152_753308_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14938.1|753282_753399_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14939.1|753501_753639_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14940.1|753803_753908_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14941.1|753882_754293_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14942.1|754594_754756_+	DNA helicase	NA	NA	NA	NA	NA
SPR14943.1|754988_755246_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14944.1|755810_759284_-	acyl-[ACP]--phospholipid O-acyltransferase	NA	NA	NA	NA	NA
SPR14945.1|759603_760236_-	esterase	NA	NA	NA	NA	NA
SPR14946.1|760232_760871_-	endonuclease III	NA	NA	NA	NA	NA
SPR14947.1|760946_761291_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
SPR14948.1|761349_761898_+	iron transporter	NA	NA	NA	NA	NA
SPR14949.1|763043_763841_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR14950.1|764120_765038_+	cation-efflux pump	NA	NA	NA	NA	NA
SPR14951.1|765093_765546_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SPR14952.1|765623_767723_+	DNA ligase (NAD(+)) LigA	NA	A0A1W6DX16	Sphingobium_phage	36.3	1.0e-100
SPR14953.1|767719_769492_+	aminopeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	35.2	8.2e-96
SPR14954.1|769733_770042_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14955.1|770019_770127_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14956.1|770349_771159_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	7.4e-20
SPR14957.1|771532_772261_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14958.1|772282_773140_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR14959.1|773240_773819_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR14960.1|773937_774582_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	65.5	5.6e-71
SPR14961.1|774822_774930_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14962.1|774907_775135_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14963.1|775146_775584_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR14964.1|775713_775866_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14965.1|776025_777219_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14966.1|778392_778773_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14967.1|778809_780324_-	lipid II flippase MurJ	NA	NA	NA	NA	NA
SPR14968.1|780700_780850_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR14969.1|781637_783392_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	38.4	1.5e-25
SPR14970.1|783429_784968_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
SPR14971.1|786263_786530_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR14972.1|786670_786862_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR14973.1|787052_787214_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR14974.1|787600_788077_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	882892	933236	2469803	transposase,integrase	Pseudomonas_phage(30.0%)	48	927912:927928	934064:934080
SPR15085.1|882892_883903_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.1e-84
SPR15086.1|883970_884246_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR15087.1|884544_885483_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15088.1|885540_885780_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15089.1|885748_885997_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15090.1|886207_887923_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR15091.1|888603_889188_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15092.1|889244_890747_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15093.1|891131_892841_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15094.1|892849_893314_+	replicative DNA helicase	NA	A0A222ZRG2	Mycobacterium_phage	28.5	1.5e-09
SPR15095.1|893494_894298_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	43.4	9.9e-49
SPR15096.1|894537_895167_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	2.1e-06
SPR15097.1|895213_895453_+	membrane protein	NA	NA	NA	NA	NA
SPR15098.1|895456_895717_+	membrane protein	NA	NA	NA	NA	NA
SPR15099.1|896586_896763_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15100.1|897006_898509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15101.1|899404_900133_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15102.1|900154_901012_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15103.1|901112_901688_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.4e-06
SPR15104.1|901809_902832_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.4e-84
SPR15105.1|903022_904225_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15106.1|904321_904465_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15107.1|904548_905004_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15108.1|905214_906930_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR15109.1|907612_909826_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15110.1|909944_911462_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15111.1|911475_912027_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15112.1|912078_913074_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15113.1|913083_914838_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15114.1|914841_915987_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15115.1|916002_918654_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15116.1|918653_919088_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15117.1|919100_919277_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15118.1|919326_919956_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15119.1|919952_920669_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15120.1|920863_922183_-	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR15121.1|922342_924034_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15122.1|924030_924414_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15123.1|924436_924964_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15124.1|925612_926602_+	ankyrin repeat-containing protein	NA	A0A068EF92	Penguinpox_virus	30.1	1.6e-08
SPR15125.1|926515_927466_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
927912:927928	attL	TTTCCTTATCCTAATCT	NA	NA	NA	NA
SPR15126.1|928149_928287_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15127.1|928439_928805_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15128.1|928791_929085_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR15129.1|929087_929864_-|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	28.5	1.6e-16
SPR15130.1|929998_930226_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15131.1|931938_932130_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR15132.1|932444_933236_-|transposase	transposase	transposase	NA	NA	NA	NA
934064:934080	attR	TTTCCTTATCCTAATCT	NA	NA	NA	NA
>prophage 13
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	946257	993083	2469803	transposase,integrase	Streptococcus_phage(33.33%)	48	947416:947439	1000788:1000811
SPR15144.1|946257_946557_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15145.1|946548_946923_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15146.1|946934_947039_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15147.1|947184_947310_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
947416:947439	attL	TATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
SPR15148.1|948323_950027_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
SPR15149.1|950023_950650_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
SPR15150.1|950597_951539_+	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR15151.1|951636_951987_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15152.1|951961_952066_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15153.1|952280_952508_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15154.1|953002_954322_+|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.3	4.6e-11
SPR15155.1|954389_954713_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15156.1|954712_955264_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15157.1|955260_955749_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15158.1|956155_956491_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15159.1|956529_957849_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15160.1|957848_958169_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15161.1|958149_960642_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15162.1|960638_961298_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR15163.1|961388_961592_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15164.1|961592_962570_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15165.1|962592_962976_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15166.1|962972_964529_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15167.1|964553_964667_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15168.1|964678_965362_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15169.1|965358_966660_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15170.1|966659_969287_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15171.1|969299_970439_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15172.1|970444_972199_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15173.1|972208_973180_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15174.1|973231_975901_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15175.1|976164_978984_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15176.1|979292_980624_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15177.1|980681_981125_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15178.1|981192_982239_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.9e-84
SPR15179.1|982360_982948_-	hydrolase	NA	NA	NA	NA	NA
SPR15180.1|982989_983484_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15181.1|983502_984441_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15182.1|984457_985036_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15183.1|985165_985867_-	histidine kinase	NA	NA	NA	NA	NA
SPR15184.1|985931_986210_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15185.1|986577_987387_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
SPR15186.1|987390_987894_-	membrane protein	NA	NA	NA	NA	NA
SPR15187.1|987941_988586_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	9.8e-07
SPR15188.1|988620_989196_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	1.6e-05
SPR15189.1|989429_990878_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	6.7e-72
SPR15190.1|990886_992602_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15191.1|992888_993083_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1000788:1000811	attR	CAAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
>prophage 14
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1003034	1181112	2469803	tRNA,transposase,integrase	Wolbachia_phage(12.9%)	175	1022726:1022741	1152824:1152840
SPR15201.1|1003034_1003790_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15202.1|1004394_1004676_+	replicative DNA helicase DnaB	NA	A0A218KST2	Xenohaliotis_phage	50.0	1.6e-17
SPR15203.1|1004801_1005149_-	RNA-binding protein	NA	NA	NA	NA	NA
SPR15204.1|1005602_1007264_-	RNA-binding protein	NA	NA	NA	NA	NA
SPR15205.1|1007538_1007790_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15206.1|1008023_1010603_+	repeat-containing protein D	NA	NA	NA	NA	NA
SPR15207.1|1011236_1012022_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR15208.1|1012063_1012519_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15209.1|1012796_1013876_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15210.1|1013841_1014279_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15211.1|1014259_1014634_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15212.1|1014608_1015199_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15213.1|1015347_1015491_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15214.1|1015580_1016084_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15215.1|1016403_1018284_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15216.1|1019117_1019624_-	peptidase A8	NA	NA	NA	NA	NA
SPR15217.1|1019918_1020713_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
1022726:1022741	attL	CCTTATCCTAATCTGG	NA	NA	NA	NA
SPR15218.1|1023201_1024953_-	glycosyl transferase	NA	NA	NA	NA	NA
1022726:1022741	attL	CCTTATCCTAATCTGG	NA	NA	NA	NA
SPR15219.1|1024937_1026248_-	Uncharacterised protein	NA	NA	NA	NA	NA
1022726:1022741	attL	CCTTATCCTAATCTGG	NA	NA	NA	NA
SPR15220.1|1026226_1027474_-	cell division protein FtsA	NA	NA	NA	NA	NA
SPR15221.1|1027767_1028469_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
SPR15222.1|1028706_1029120_+	iron-sulfur-binding protein	NA	NA	NA	NA	NA
SPR15223.1|1029131_1030418_+	aminotransferase class V-fold PLP-dependent enzyme	NA	H7BUW1	unidentified_phage	37.8	2.1e-29
SPR15224.1|1030432_1031704_+	cysteine desulfurase	NA	NA	NA	NA	NA
SPR15225.1|1031743_1032169_+	iron-sulfur cluster scaffold-like protein	NA	A0A218MKD1	uncultured_virus	73.8	7.0e-46
SPR15226.1|1032178_1032553_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7N5	Lake_Baikal_phage	42.9	2.1e-14
SPR15227.1|1032565_1033069_+	co-chaperone HscB	NA	NA	NA	NA	NA
SPR15228.1|1033055_1034909_+	molecular chaperone HscA	NA	F2Y0P3	Organic_Lake_phycodnavirus	38.1	2.0e-76
SPR15229.1|1034925_1035270_+	(2Fe-2S) ferredoxin	NA	NA	NA	NA	NA
SPR15230.1|1035706_1036060_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15231.1|1036086_1036311_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15232.1|1036513_1037191_+	histidine phosphotransferase	NA	NA	NA	NA	NA
SPR15233.1|1037254_1038655_+	class II fumarate hydratase	NA	NA	NA	NA	NA
SPR15234.1|1038819_1040298_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	29.1	7.2e-37
SPR15235.1|1042766_1042937_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR15236.1|1043182_1043551_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR15237.1|1044499_1045372_+	ankyrin	NA	NA	NA	NA	NA
SPR15238.1|1045368_1046031_+	membrane protein	NA	NA	NA	NA	NA
SPR15239.1|1046350_1046488_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15240.1|1046477_1046720_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15241.1|1046763_1046997_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15242.1|1046948_1047512_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15243.1|1047486_1048053_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.8	1.1e-25
SPR15244.1|1048163_1048613_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR15245.1|1048613_1048997_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR15246.1|1049247_1049358_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15247.1|1049382_1050939_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15248.1|1050935_1051319_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15249.1|1051341_1052286_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15250.1|1052319_1052493_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15251.1|1052583_1053243_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR15252.1|1053239_1055732_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15253.1|1055712_1056042_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15254.1|1056041_1056437_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15255.1|1056451_1056940_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15256.1|1056936_1057488_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15257.1|1057487_1057811_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15258.1|1057875_1058532_-|integrase	integrase	integrase	A0A1P8CWW9	Bacillus_phage	27.3	7.6e-07
SPR15259.1|1058847_1059216_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15260.1|1059648_1059777_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15261.1|1059872_1060463_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	48.9	1.3e-26
SPR15262.1|1060950_1061163_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15263.1|1061671_1061872_+|transposase	transposase	transposase	NA	NA	NA	NA
1061595:1061610	attR	CCTTATCCTAATCTGG	NA	NA	NA	NA
SPR15264.1|1062065_1062194_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1061595:1061610	attR	CCTTATCCTAATCTGG	NA	NA	NA	NA
SPR15265.1|1062197_1062383_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1061595:1061610	attR	CCTTATCCTAATCTGG	NA	NA	NA	NA
SPR15266.1|1062394_1062559_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15267.1|1062649_1062811_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15268.1|1063059_1065201_+	DNA helicase II	NA	A7KV33	Bacillus_phage	36.8	2.1e-106
SPR15269.1|1065401_1065719_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15270.1|1066017_1067454_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	32.1	1.2e-49
SPR15271.1|1067518_1068865_-|tRNA	glutamate--tRNA ligase 2	tRNA	NA	NA	NA	NA
SPR15272.1|1069045_1071088_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.4	7.7e-98
SPR15273.1|1071115_1072369_-	MFS transporter	NA	NA	NA	NA	NA
SPR15274.1|1072405_1074970_-	type VI secretion protein	NA	NA	NA	NA	NA
SPR15275.1|1074962_1078235_-	type VI secretion protein	NA	NA	NA	NA	NA
SPR15276.1|1078288_1082170_-	type VI secretion protein	NA	NA	NA	NA	NA
SPR15277.1|1082191_1084639_-	type VI secretion protein	NA	NA	NA	NA	NA
SPR15278.1|1084638_1087056_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
SPR15279.1|1087066_1087354_-	type VI secretion protein	NA	NA	NA	NA	NA
SPR15280.1|1087669_1089610_-	primosomal protein N'	NA	NA	NA	NA	NA
SPR15281.1|1089796_1091332_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	39.2	2.3e-94
SPR15282.1|1091374_1092133_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR15283.1|1092756_1092990_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15284.1|1093464_1094331_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
SPR15285.1|1095377_1096043_+	septal ring lytic transglycosylase RlpA family lipoprotein	NA	F5B3X9	Synechococcus_phage	40.2	7.2e-13
SPR15286.1|1096854_1098162_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR15287.1|1098653_1098911_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15288.1|1098997_1099573_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15289.1|1099805_1101242_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	2.4e-74
SPR15290.1|1101250_1101997_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15291.1|1102521_1102815_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15292.1|1103996_1104521_+	Uncharacterised protein	NA	K4ICR8	Acidithiobacillus_phage	26.8	5.5e-08
SPR15293.1|1104993_1105152_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
SPR15294.1|1105670_1106660_-	GTPase ObgE	NA	NA	NA	NA	NA
SPR15295.1|1106679_1107057_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15296.1|1107079_1107409_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15297.1|1107588_1108329_-	membrane protein	NA	NA	NA	NA	NA
SPR15298.1|1108673_1109063_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR15299.1|1109080_1111216_+	(p)ppGpp synthetase	NA	U5J9N6	Bacillus_phage	35.1	9.1e-09
SPR15300.1|1111226_1111622_+	holo-ACP synthase	NA	NA	NA	NA	NA
SPR15301.1|1112232_1112406_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15302.1|1112749_1114417_-	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	53.1	1.1e-142
SPR15303.1|1114489_1114774_-	chaperonin	NA	A0A221S4G8	uncultured_virus	46.2	4.0e-13
SPR15304.1|1115705_1116875_+	ankyrin repeat-containing protein 09	NA	Q6VZB8	Canarypox_virus	28.6	4.0e-06
SPR15305.1|1117360_1118815_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	34.6	5.2e-64
SPR15306.1|1119565_1121128_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	34.6	9.3e-27
SPR15307.1|1121411_1121762_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
SPR15308.1|1122378_1122684_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15309.1|1122900_1124556_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR15310.1|1124584_1124923_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15311.1|1124974_1125367_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15312.1|1125423_1127418_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15313.1|1127717_1127954_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15314.1|1127922_1128162_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15315.1|1128245_1128389_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15316.1|1128484_1128844_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15317.1|1129139_1129361_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR15318.1|1129468_1130419_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.0e-84
SPR15319.1|1130540_1131128_-	hydrolase	NA	NA	NA	NA	NA
SPR15320.1|1131169_1131664_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15321.1|1131794_1132169_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15322.1|1132180_1132285_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15323.1|1132375_1132618_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15324.1|1132938_1133490_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15325.1|1133541_1134102_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15326.1|1134117_1135080_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15327.1|1135308_1135734_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15328.1|1135743_1136730_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15329.1|1136806_1137244_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15330.1|1137255_1137483_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15331.1|1137460_1137631_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15332.1|1137647_1137902_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15333.1|1137903_1138233_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR15334.1|1138213_1138612_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15335.1|1138661_1139291_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15336.1|1139431_1139659_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15337.1|1139757_1140363_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15338.1|1140676_1140937_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15339.1|1141546_1141699_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15340.1|1142061_1142205_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15341.1|1142472_1142898_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	28.9	1.1e-06
SPR15342.1|1143261_1144698_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	8.7e-72
SPR15343.1|1144706_1145240_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15344.1|1146086_1146266_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR15345.1|1147323_1147836_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15346.1|1148364_1148487_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15347.1|1148532_1148757_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15348.1|1149271_1150624_-	Outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
SPR15349.1|1150683_1151361_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15350.1|1151499_1151766_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15351.1|1151766_1152033_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15352.1|1152697_1153090_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15353.1|1153427_1153595_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15354.1|1153862_1154330_+	single-stranded DNA-binding protein	NA	A0A1B1IVU7	uncultured_Mediterranean_phage	51.3	1.7e-37
SPR15355.1|1154408_1155269_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15356.1|1156079_1156292_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR15357.1|1156860_1158666_-	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	32.6	3.3e-20
SPR15358.1|1159058_1159922_+	peptide chain release factor 1	NA	NA	NA	NA	NA
SPR15359.1|1160241_1162731_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15360.1|1163057_1163210_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15361.1|1163435_1164455_-	porphobilinogen synthase	NA	NA	NA	NA	NA
SPR15362.1|1164625_1165315_+	protein TolQ	NA	NA	NA	NA	NA
SPR15363.1|1165320_1165779_+	protein TolR	NA	NA	NA	NA	NA
SPR15364.1|1165765_1167004_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15365.1|1167096_1167888_-	NAD kinase	NA	NA	NA	NA	NA
SPR15366.1|1167904_1168939_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.6	6.5e-69
SPR15367.1|1168962_1169472_-	CarD family transcriptional regulator	NA	NA	NA	NA	NA
SPR15368.1|1169691_1170360_-	DNA polymerase III subunit epsilon	NA	A0A1B2LRV5	Wolbachia_phage	50.0	2.8e-09
SPR15369.1|1171104_1174542_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR15370.1|1175254_1175578_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15371.1|1175577_1175895_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR15372.1|1175924_1176107_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15373.1|1176926_1179632_+	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	33.0	2.3e-57
SPR15374.1|1180128_1180803_-	membrane protein	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	27.1	1.9e-08
SPR15375.1|1180920_1181112_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 15
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1184506	1230196	2469803	tRNA,transposase	Streptococcus_phage(25.0%)	40	NA	NA
SPR15381.1|1184506_1184896_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15382.1|1185168_1185525_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15383.1|1185536_1185911_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15384.1|1186191_1188480_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	43.0	3.9e-74
SPR15385.1|1188566_1188938_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15386.1|1188970_1190638_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.1	4.7e-45
SPR15387.1|1190778_1191618_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15388.1|1192003_1192198_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15389.1|1192263_1192866_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15390.1|1193331_1194027_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15391.1|1194802_1194997_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR15392.1|1195479_1197690_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR15393.1|1198146_1198308_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15394.1|1198433_1199894_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR15395.1|1199896_1201375_-|tRNA	glutamyl-tRNA(Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR15396.1|1201374_1201674_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR15397.1|1201756_1203493_-	RNase J family beta-CASP ribonuclease	NA	NA	NA	NA	NA
SPR15398.1|1203624_1204362_-	DNA-binding response regulator	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.5e-14
SPR15399.1|1207332_1207497_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15400.1|1207493_1207688_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15401.1|1208409_1208682_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15402.1|1210876_1211683_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
SPR15403.1|1212498_1214214_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15404.1|1214222_1215659_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	7.4e-71
SPR15405.1|1215893_1216469_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	7.4e-06
SPR15406.1|1216503_1217148_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.5	1.4e-05
SPR15407.1|1217194_1217701_+	membrane protein	NA	NA	NA	NA	NA
SPR15408.1|1217704_1218514_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
SPR15409.1|1218880_1219159_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15410.1|1219223_1219925_+	histidine kinase	NA	NA	NA	NA	NA
SPR15411.1|1220054_1220633_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15412.1|1220649_1221498_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15413.1|1221604_1222099_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15414.1|1222140_1222728_+	hydrolase	NA	NA	NA	NA	NA
SPR15415.1|1222852_1223791_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.2	2.9e-84
SPR15416.1|1223858_1224314_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15417.1|1224593_1227038_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15418.1|1227156_1228668_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15419.1|1228681_1229233_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15420.1|1229284_1230196_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 16
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1249319	1303916	2469803	tRNA,transposase,integrase	Mannheimia_phage(25.0%)	53	1289279:1289295	1304479:1304495
SPR15441.1|1249319_1249496_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15442.1|1249709_1250558_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.6	6.8e-08
SPR15443.1|1250628_1250892_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15444.1|1250992_1251796_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15445.1|1251876_1252266_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15446.1|1252532_1252808_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15447.1|1252826_1253510_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15448.1|1253510_1253762_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15449.1|1253778_1254495_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15450.1|1254771_1255053_-	membrane protein	NA	NA	NA	NA	NA
SPR15451.1|1255012_1255279_-	membrane protein	NA	NA	NA	NA	NA
SPR15452.1|1255696_1256071_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR15453.1|1256170_1256332_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR15454.1|1257113_1257740_-	lipoate-protein ligase B	NA	NA	NA	NA	NA
SPR15455.1|1257822_1259241_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR15456.1|1259247_1260375_+	cell division protein FtsW	NA	NA	NA	NA	NA
SPR15457.1|1260378_1261458_+	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR15458.1|1262008_1262224_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR15459.1|1263245_1263374_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15460.1|1263421_1263619_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15461.1|1263630_1263735_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15462.1|1264333_1265548_-	aspartate kinase	NA	NA	NA	NA	NA
SPR15463.1|1265828_1266323_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15464.1|1266306_1268049_-	potassium transporter	NA	NA	NA	NA	NA
SPR15465.1|1268221_1268794_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
SPR15466.1|1268790_1269405_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15467.1|1269427_1269616_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15468.1|1269704_1270361_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15469.1|1270729_1271167_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15470.1|1271178_1271553_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15471.1|1271659_1274245_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15472.1|1274285_1276784_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15473.1|1277006_1277237_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR15474.1|1277293_1277566_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15475.1|1278813_1279167_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15476.1|1279322_1280105_-	protein disulfide-isomerase	NA	NA	NA	NA	NA
SPR15477.1|1280969_1282415_+	sodium:pantothenate symporter	NA	NA	NA	NA	NA
SPR15478.1|1282786_1285519_+	DNA polymerase I	NA	D9ZNH3	Clostridium_phage	31.0	4.9e-39
SPR15479.1|1285584_1286949_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
SPR15480.1|1286957_1287641_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15481.1|1287711_1288785_+	cell division protein ZapE	NA	NA	NA	NA	NA
SPR15482.1|1288777_1289431_+	thymidylate kinase	NA	Q2Z0N0	Pseudomonas_phage	35.8	5.8e-23
1289279:1289295	attL	TTTCATCAAAAAATTAC	NA	NA	NA	NA
SPR15483.1|1289570_1291439_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
SPR15484.1|1292078_1293362_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15485.1|1293970_1294357_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15486.1|1294402_1294552_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15487.1|1295333_1296839_-	transcription termination factor Rho	NA	NA	NA	NA	NA
SPR15488.1|1298327_1299356_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR15489.1|1299348_1300383_+	ferrochelatase	NA	NA	NA	NA	NA
SPR15490.1|1300391_1300826_+	membrane protein	NA	NA	NA	NA	NA
SPR15491.1|1301912_1302149_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15492.1|1302575_1302944_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15493.1|1303259_1303916_+|integrase	integrase	integrase	A0A1P8CWW9	Bacillus_phage	27.4	1.9e-05
1304479:1304495	attR	TTTCATCAAAAAATTAC	NA	NA	NA	NA
>prophage 17
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1312102	1350026	2469803	transposase	Streptococcus_phage(50.0%)	45	NA	NA
SPR15507.1|1312102_1313065_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15508.1|1313147_1313786_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15509.1|1313908_1314325_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15510.1|1314617_1314974_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	36.6	6.8e-10
SPR15511.1|1315006_1315876_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15512.1|1316224_1316380_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15513.1|1316472_1316628_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15514.1|1316655_1316913_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15515.1|1316888_1317125_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
SPR15516.1|1318192_1319272_-	heme A synthase	NA	NA	NA	NA	NA
SPR15517.1|1320268_1320493_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15518.1|1320499_1320775_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15519.1|1320774_1321167_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15520.1|1321449_1321887_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15521.1|1321898_1322273_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15522.1|1323119_1323296_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15523.1|1323838_1325140_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR15524.1|1325159_1326086_-	permease	NA	NA	NA	NA	NA
SPR15525.1|1326395_1326995_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15526.1|1327058_1327442_+	citrate synthase	NA	NA	NA	NA	NA
SPR15527.1|1327451_1327835_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15528.1|1328031_1328832_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15529.1|1328791_1329496_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15530.1|1329600_1331037_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	1.3e-72
SPR15531.1|1331271_1331844_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15532.1|1331878_1332523_+	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	27.6	1.1e-05
SPR15533.1|1332570_1333074_+	membrane protein	NA	NA	NA	NA	NA
SPR15534.1|1333077_1333887_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	5.3e-18
SPR15535.1|1334253_1334532_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15536.1|1334596_1335298_+	histidine kinase	NA	NA	NA	NA	NA
SPR15537.1|1335427_1336006_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15538.1|1336156_1336960_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15539.1|1336978_1337473_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15540.1|1337514_1338102_+	hydrolase	NA	NA	NA	NA	NA
SPR15541.1|1338223_1339138_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.2	3.3e-85
SPR15542.1|1339328_1340531_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15543.1|1340627_1340771_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15544.1|1340854_1341025_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15545.1|1341117_1341312_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15546.1|1341521_1341899_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR15547.1|1342001_1343237_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	38.0	8.0e-66
SPR15548.1|1343937_1346778_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15549.1|1346896_1348414_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15550.1|1348427_1348979_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15551.1|1349030_1350026_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 18
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1368237	1414088	2469803	transposase,integrase	Pseudomonas_phage(25.0%)	46	1364629:1364645	1379460:1379476
1364629:1364645	attL	AAACTTCATTATAAATG	NA	NA	NA	NA
SPR15573.1|1368237_1368915_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	28.8	8.7e-14
SPR15574.1|1369160_1369469_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15575.1|1370146_1370464_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15576.1|1370915_1371185_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15577.1|1371581_1372388_+	uracil-DNA glycosylase	NA	NA	NA	NA	NA
SPR15578.1|1374069_1375353_+	amino acid transporter	NA	NA	NA	NA	NA
SPR15579.1|1375692_1378611_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15580.1|1379043_1379439_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15581.1|1380034_1381231_-	cytochrome b	NA	NA	NA	NA	NA
1379460:1379476	attR	CATTTATAATGAAGTTT	NA	NA	NA	NA
SPR15582.1|1381371_1382037_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR15583.1|1382148_1383288_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15584.1|1383441_1384092_-	heme exporter protein B	NA	NA	NA	NA	NA
SPR15585.1|1384088_1384694_-	cytochrome c biogenesis protein CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	5.9e-06
SPR15586.1|1384767_1385115_+	Aconitate hydratase A	NA	NA	NA	NA	NA
SPR15587.1|1385062_1385893_+	Aconitate hydratase A	NA	NA	NA	NA	NA
SPR15588.1|1386553_1386778_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15589.1|1386804_1387341_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15590.1|1387359_1387671_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15591.1|1388065_1388866_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15592.1|1388825_1389626_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15593.1|1389634_1390099_+	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	32.2	1.3e-08
SPR15594.1|1390279_1391083_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	42.6	8.9e-50
SPR15595.1|1391322_1391952_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	9.5e-07
SPR15596.1|1391999_1392503_+	membrane protein	NA	NA	NA	NA	NA
SPR15597.1|1393183_1393966_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15598.1|1394066_1394645_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.4e-06
SPR15599.1|1394763_1395714_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	5.9e-85
SPR15600.1|1395849_1396209_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15601.1|1396212_1396359_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15602.1|1396879_1400314_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR15603.1|1400733_1400853_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR15604.1|1401355_1402381_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15605.1|1402682_1403138_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15606.1|1403348_1403726_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR15607.1|1403828_1405064_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	37.7	2.3e-65
SPR15608.1|1405746_1408191_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15609.1|1408339_1409359_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15610.1|1409372_1409579_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15611.1|1409763_1409916_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15612.1|1409959_1410376_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15613.1|1410650_1411202_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15614.1|1411186_1412191_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15615.1|1412200_1413187_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15616.1|1413263_1413701_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15617.1|1413712_1413940_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15618.1|1413917_1414088_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 19
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1418343	1527357	2469803	tRNA,transposase,protease,integrase	Streptococcus_phage(22.22%)	111	1438683:1438720	1516934:1516951
SPR15627.1|1418343_1419306_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15628.1|1419526_1419931_-	ATP synthase subunit epsilon	NA	NA	NA	NA	NA
SPR15629.1|1419927_1421364_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
SPR15630.1|1421709_1422849_-	capsule biosynthesis protein CapM	NA	NA	NA	NA	NA
SPR15631.1|1422884_1423658_+	aplha/beta hydrolase	NA	NA	NA	NA	NA
SPR15632.1|1424037_1426035_-	murein transglycosylase	NA	I1VXB7	Halocynthia_phage	39.4	3.4e-05
SPR15633.1|1426076_1427015_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
SPR15634.1|1427836_1428871_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.7	2.4e-31
SPR15635.1|1428867_1431306_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR15636.1|1431391_1432321_-	elongation factor Ts	NA	NA	NA	NA	NA
SPR15637.1|1432317_1433193_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
SPR15638.1|1433520_1434372_-	ATPase	NA	NA	NA	NA	NA
SPR15639.1|1434355_1436008_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.6	9.4e-46
SPR15640.1|1436812_1438300_-	ankyrin repeat-containing protein 13	NA	A0A1V0S7Q4	Shearwaterpox_virus	27.8	6.4e-09
1438683:1438720	attL	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATT	NA	NA	NA	NA
SPR15641.1|1438734_1438923_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
1438683:1438720	attL	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATT	NA	NA	NA	NA
SPR15642.1|1438951_1439056_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15643.1|1439465_1440977_+	ATPase AAA	NA	NA	NA	NA	NA
SPR15644.1|1441309_1441573_+|tRNA	leucine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR15645.1|1441814_1443479_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR15646.1|1443572_1444988_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	5.6e-71
SPR15647.1|1445326_1446892_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15648.1|1446900_1448337_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	2.4e-74
SPR15649.1|1448572_1449148_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	7.4e-06
SPR15650.1|1449185_1449830_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	28.1	4.4e-07
SPR15651.1|1449877_1450384_+	membrane protein	NA	NA	NA	NA	NA
SPR15652.1|1450387_1451197_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR15653.1|1451570_1452299_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15654.1|1452320_1453178_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15655.1|1453278_1453857_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15656.1|1453975_1454998_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	65.3	9.8e-86
SPR15657.1|1455188_1456391_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15658.1|1456487_1456631_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15659.1|1456714_1456885_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15660.1|1456977_1457172_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15661.1|1457381_1459097_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR15662.1|1459779_1461993_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15663.1|1462111_1464193_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15664.1|1464244_1465240_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15665.1|1465249_1467004_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15666.1|1467009_1468155_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15667.1|1468177_1470814_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15668.1|1470813_1471269_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15669.1|1471222_1472116_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15670.1|1472112_1472829_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15671.1|1472840_1473137_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	59.3	1.6e-12
SPR15672.1|1473247_1474657_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR15673.1|1474910_1476602_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15674.1|1476598_1476982_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15675.1|1477004_1477949_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15676.1|1477982_1478156_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15677.1|1478239_1478899_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR15678.1|1478895_1481388_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15679.1|1481368_1481689_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15680.1|1481688_1483014_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15681.1|1483052_1483388_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15682.1|1483794_1484283_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15683.1|1484279_1484831_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15684.1|1484830_1485154_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15685.1|1485295_1485970_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	31.0	1.9e-16
SPR15686.1|1486215_1486524_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15687.1|1487236_1487569_-|transposase	transposase	transposase	NA	NA	NA	NA
1487202:1487239	attR	AATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR15688.1|1488952_1489573_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
1487202:1487239	attR	AATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR15689.1|1490142_1490403_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15690.1|1490351_1490582_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15691.1|1490550_1490859_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	32.9	6.7e-06
SPR15692.1|1491355_1491601_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15693.1|1491629_1492553_+|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.9	7.2e-11
SPR15694.1|1492656_1492980_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15695.1|1492979_1493375_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15696.1|1493378_1493531_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15697.1|1493527_1493914_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15698.1|1494146_1494473_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15699.1|1494515_1495406_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15700.1|1495374_1495848_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15701.1|1495847_1496177_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15702.1|1496157_1497030_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15703.1|1497001_1497913_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15704.1|1497862_1498906_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR15705.1|1499206_1499959_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15706.1|1499981_1500365_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15707.1|1500361_1500844_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15708.1|1501057_1502233_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15709.1|1502325_1502730_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15710.1|1502813_1503467_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15711.1|1503463_1504357_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15712.1|1504310_1504766_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15713.1|1504765_1505881_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15714.1|1506035_1506482_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15715.1|1506453_1506789_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15716.1|1506743_1507730_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15717.1|1507739_1508630_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15718.1|1508656_1509925_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15719.1|1510035_1510806_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15720.1|1511072_1512311_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15721.1|1512307_1512634_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15722.1|1512679_1513927_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15723.1|1514226_1514439_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15724.1|1514657_1516595_-	membrane protein	NA	NA	NA	NA	NA
SPR15725.1|1516642_1516750_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15726.1|1517282_1517738_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15727.1|1517831_1518368_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15728.1|1518394_1518970_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15729.1|1519070_1519928_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15730.1|1519902_1520679_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15731.1|1521029_1521746_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15732.1|1522638_1523142_-	membrane protein	NA	NA	NA	NA	NA
SPR15733.1|1523188_1523818_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	2.1e-06
SPR15734.1|1524057_1525494_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	4.3e-71
SPR15735.1|1525502_1526303_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15736.1|1526262_1526598_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15737.1|1526958_1527357_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 20
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1541939	1596325	2469803	transposase,integrase	Pseudomonas_phage(25.0%)	50	1560940:1560958	1586644:1586662
SPR15749.1|1541939_1542152_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15750.1|1542316_1543498_-	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	22.5	6.2e-15
SPR15751.1|1544574_1544733_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15752.1|1544954_1546178_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	43.5	9.1e-62
SPR15753.1|1546413_1546989_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15754.1|1547000_1547645_+	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	31.7	1.1e-13
SPR15755.1|1547747_1548296_+	membrane protein	NA	NA	NA	NA	NA
SPR15756.1|1548299_1549109_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
SPR15757.1|1549931_1550135_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15758.1|1550146_1550584_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15759.1|1550773_1551466_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15760.1|1551515_1552910_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR15761.1|1553427_1553787_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15762.1|1553833_1555174_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15763.1|1555341_1555794_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR15764.1|1555908_1557132_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	38.7	1.6e-66
SPR15765.1|1557813_1559175_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15766.1|1559231_1560026_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15767.1|1560192_1560732_+	Uncharacterised protein	NA	NA	NA	NA	NA
1560940:1560958	attL	AAAACGATTATTATTCAAA	NA	NA	NA	NA
SPR15768.1|1561591_1561948_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15769.1|1561959_1562334_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15770.1|1562325_1562562_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15771.1|1562758_1564198_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15772.1|1564616_1565846_+|integrase	integrase	integrase	A0A1V0E8G8	Vibrio_phage	25.5	5.8e-16
SPR15773.1|1565987_1566311_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15774.1|1566310_1566862_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15775.1|1566858_1567347_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15776.1|1567753_1568089_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15777.1|1568127_1569447_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15778.1|1569446_1569776_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15779.1|1569756_1572249_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15780.1|1572245_1572905_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR15781.1|1572995_1573169_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15782.1|1573202_1574147_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15783.1|1574169_1574553_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15784.1|1574549_1576241_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15785.1|1576252_1576936_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15786.1|1576932_1578234_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15787.1|1578233_1580870_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15788.1|1580882_1582022_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15789.1|1582027_1583782_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15790.1|1583791_1584763_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15791.1|1584814_1585366_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15792.1|1585379_1587485_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
1586644:1586662	attR	TTTGAATAATAATCGTTTT	NA	NA	NA	NA
SPR15793.1|1587748_1590568_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15794.1|1591250_1592966_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR15795.1|1593176_1593632_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15796.1|1593715_1593859_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15797.1|1593955_1595158_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15798.1|1595350_1596325_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	1.6e-85
>prophage 21
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1606324	1686519	2469803	transposase,integrase	Pseudomonas_phage(25.0%)	99	1641934:1641950	1672905:1672928
SPR15809.1|1606324_1607761_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.3e-72
SPR15810.1|1607994_1608570_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	1.3e-05
SPR15811.1|1608607_1609252_+	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	31.1	1.1e-13
SPR15812.1|1609299_1609848_+	membrane protein	NA	NA	NA	NA	NA
SPR15813.1|1609851_1610661_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	7.4e-20
SPR15814.1|1611034_1611763_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15815.1|1611784_1612642_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15816.1|1612742_1613327_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.5e-06
SPR15817.1|1613432_1614515_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	8.8e-85
SPR15818.1|1614681_1615038_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15819.1|1615247_1616963_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR15820.1|1617645_1618500_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15821.1|1618508_1620464_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15822.1|1620727_1622833_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15823.1|1622846_1623398_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15824.1|1623449_1624517_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15825.1|1624526_1626281_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15826.1|1626286_1627432_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15827.1|1627447_1630105_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR15828.1|1630104_1631406_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR15829.1|1631402_1632086_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15830.1|1632097_1633792_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15831.1|1633788_1634172_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15832.1|1634194_1634947_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15833.1|1635247_1636291_+	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR15834.1|1636365_1637148_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15835.1|1637119_1637992_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15836.1|1637972_1638302_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15837.1|1638301_1639630_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15838.1|1639668_1640004_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15839.1|1640410_1640899_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15840.1|1640895_1641447_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15841.1|1641446_1641770_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15842.1|1641849_1642320_-	peroxiredoxin	NA	NA	NA	NA	NA
1641934:1641950	attL	TTTCTGATTGATTAAAA	NA	NA	NA	NA
SPR15843.1|1642340_1642484_-|integrase	integrase	integrase	NA	NA	NA	NA
1641934:1641950	attL	TTTCTGATTGATTAAAA	NA	NA	NA	NA
SPR15844.1|1642530_1642758_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15845.1|1643129_1643696_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15846.1|1643943_1644471_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15847.1|1644512_1645067_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15848.1|1645697_1647413_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR15849.1|1647622_1648078_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15850.1|1648147_1649158_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.1e-84
SPR15851.1|1649279_1649855_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15852.1|1649955_1650813_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15853.1|1650787_1651564_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15854.1|1651937_1652747_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	9.1e-18
SPR15855.1|1652750_1653299_-	membrane protein	NA	NA	NA	NA	NA
SPR15856.1|1653401_1654046_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	31.7	8.2e-14
SPR15857.1|1654083_1654659_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR15858.1|1654799_1655438_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15859.1|1655424_1655688_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15860.1|1655787_1656165_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15861.1|1656253_1656910_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15862.1|1657181_1657451_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15863.1|1657466_1657892_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
1657470:1657486	attR	TTTCTGATTGATTAAAA	NA	NA	NA	NA
SPR15864.1|1657848_1658421_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
1657470:1657486	attR	TTTCTGATTGATTAAAA	NA	NA	NA	NA
SPR15865.1|1658637_1658844_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15866.1|1659260_1659545_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15867.1|1659790_1660078_+|integrase	integrase	integrase	A0A077KGX2	Edwardsiella_phage	31.2	1.1e-05
SPR15868.1|1660163_1660385_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15869.1|1660585_1660909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15870.1|1660908_1661328_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR15871.1|1661308_1661461_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15872.1|1661457_1661784_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15873.1|1661922_1662090_+	TPR repeat-containing protein 06_01	NA	NA	NA	NA	NA
SPR15874.1|1662055_1662703_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR15875.1|1663300_1663693_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15876.1|1664687_1665338_+	electron transporter	NA	NA	NA	NA	NA
SPR15877.1|1665779_1665953_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15878.1|1665949_1666069_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15879.1|1666482_1666992_+|integrase	integrase	integrase	K7PHM9	Enterobacterial_phage	31.3	9.4e-13
SPR15880.1|1667129_1667231_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15881.1|1667234_1667453_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15882.1|1667452_1667668_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15883.1|1667677_1667872_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR15884.1|1667852_1668005_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15885.1|1668001_1668466_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15886.1|1668522_1669542_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	25.3	3.1e-15
SPR15887.1|1669528_1669903_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15888.1|1669914_1670271_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15889.1|1670779_1670980_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15890.1|1671092_1671359_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR15891.1|1671493_1671622_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15892.1|1672230_1672626_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15893.1|1673326_1674274_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR15894.1|1674379_1675033_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR15895.1|1675595_1675865_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15896.1|1676957_1678169_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR15897.1|1678432_1679227_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15898.1|1679283_1680645_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR15899.1|1681326_1682550_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	38.4	3.0e-65
SPR15900.1|1682664_1683117_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR15901.1|1683253_1683652_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15902.1|1683739_1684120_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15903.1|1684119_1684659_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15904.1|1684600_1684903_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15905.1|1684925_1685345_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15906.1|1685579_1686464_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	63.9	2.6e-74
SPR15907.1|1686402_1686519_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 22
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1719098	1761501	2469803	tRNA,transposase,integrase	uncultured_Mediterranean_phage(25.0%)	52	1702580:1702621	1760738:1760779
1702580:1702621	attL	ATTAGACCTCTTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR15930.1|1719098_1719977_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR15931.1|1720086_1721805_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15932.1|1721813_1723250_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.8	3.2e-74
SPR15933.1|1723484_1724060_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	7.4e-06
SPR15934.1|1724094_1724739_+	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	27.6	1.1e-05
SPR15935.1|1724785_1725292_+	membrane protein	NA	NA	NA	NA	NA
SPR15936.1|1725295_1726105_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	5.3e-18
SPR15937.1|1726471_1726750_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15938.1|1726814_1727516_+	histidine kinase	NA	NA	NA	NA	NA
SPR15939.1|1727645_1728224_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15940.1|1728240_1729173_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15941.1|1729191_1729686_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15942.1|1729727_1730333_+	hydrolase	NA	NA	NA	NA	NA
SPR15943.1|1730471_1730897_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15944.1|1730853_1731426_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR15945.1|1731657_1733349_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR15946.1|1733345_1733729_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR15947.1|1733751_1734279_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR15948.1|1734492_1735482_+	ankyrin repeat-containing protein	NA	Q6VZ29	Canarypox_virus	30.4	4.8e-13
SPR15949.1|1735395_1736346_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR15950.1|1737029_1737167_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15951.1|1737319_1737685_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR15952.1|1737671_1737965_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR15953.1|1737967_1738744_-|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	28.5	1.6e-16
SPR15954.1|1738878_1739106_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15955.1|1739475_1740042_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15956.1|1740150_1740687_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15957.1|1740667_1740994_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15958.1|1740997_1741120_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15959.1|1741119_1741353_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR15960.1|1742504_1743056_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15961.1|1743308_1744301_-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA	NA
SPR15962.1|1744363_1745635_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
SPR15963.1|1745842_1746346_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15964.1|1746485_1746710_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15965.1|1747126_1748053_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.5	5.0e-36
SPR15966.1|1748113_1750807_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	23.7	5.0e-28
SPR15967.1|1750859_1752392_-	ATP/ADP translocase	NA	NA	NA	NA	NA
SPR15968.1|1752757_1753615_+	rRNA (cytidine-2'-O-)-methyltransferase	NA	NA	NA	NA	NA
SPR15969.1|1753616_1754906_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	2.0e-99
SPR15970.1|1754883_1755651_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	8.0e-32
SPR15971.1|1755631_1755766_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15972.1|1755796_1756393_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR15973.1|1756399_1757197_+	chromosome partitioning protein ParA	NA	V5UP47	Mycobacterium_phage	32.1	2.5e-12
SPR15974.1|1757208_1758090_+	chromosome partitioning protein	NA	A0A0F7L836	uncultured_marine_virus	25.3	2.5e-05
SPR15975.1|1758384_1758864_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15976.1|1758990_1759347_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15977.1|1759333_1759600_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR15978.1|1759603_1759702_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15979.1|1760359_1760470_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15980.1|1760759_1761134_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1760738:1760779	attR	ATTAGACCTCTTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR15981.1|1761087_1761501_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 23
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1769568	1814876	2469803	transposase	Pseudomonas_phage(33.33%)	50	NA	NA
SPR15988.1|1769568_1769697_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15989.1|1769896_1770172_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR15990.1|1770140_1770395_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR15991.1|1770423_1770579_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR15992.1|1771024_1771264_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15993.1|1771239_1772127_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR15994.1|1772598_1774767_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR15995.1|1775059_1775863_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.9	1.4e-18
SPR15996.1|1776236_1777013_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15997.1|1776987_1777845_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR15998.1|1777945_1778299_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	3.5e-06
SPR15999.1|1778303_1778525_+	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR16000.1|1778643_1779582_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	59.0	2.2e-84
SPR16001.1|1779649_1780105_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16002.1|1780384_1781644_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16003.1|1781689_1783252_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16004.1|1783580_1784162_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16005.1|1784109_1784370_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16006.1|1784421_1785429_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16007.1|1785438_1787193_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16008.1|1787198_1787333_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16009.1|1787319_1788903_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR16010.1|1789293_1790220_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	59.4	2.6e-85
SPR16011.1|1790564_1792073_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR16012.1|1792178_1792313_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16013.1|1792513_1793380_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16014.1|1793449_1793620_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16015.1|1793712_1793907_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16016.1|1794116_1795832_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.2e-85
SPR16017.1|1796512_1797838_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16018.1|1797809_1799333_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16019.1|1799851_1800751_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16020.1|1800764_1800971_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16021.1|1801155_1801308_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16022.1|1801351_1801768_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16023.1|1802042_1802594_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16024.1|1802645_1803593_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16025.1|1803602_1804850_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16026.1|1804851_1805358_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16027.1|1805363_1805498_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16028.1|1805484_1807380_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR16029.1|1807379_1807835_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16030.1|1807788_1808682_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16031.1|1808678_1809395_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16032.1|1809406_1809559_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16033.1|1809521_1809968_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	42.4	1.7e-21
SPR16034.1|1810602_1810974_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR16035.1|1811460_1813749_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR16036.1|1813921_1814347_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16037.1|1814303_1814876_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 24
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1825059	1921795	2469803	tRNA,transposase,integrase	Pseudomonas_phage(30.77%)	109	1838773:1838789	1927676:1927693
SPR16053.1|1825059_1825737_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	28.8	8.7e-14
SPR16054.1|1825982_1826291_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16055.1|1826424_1826625_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16056.1|1827089_1827665_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR16057.1|1827702_1828347_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	25.4	1.2e-07
SPR16058.1|1828449_1828998_+	membrane protein	NA	NA	NA	NA	NA
SPR16059.1|1829001_1829811_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	9.1e-18
SPR16060.1|1830177_1830906_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR16061.1|1830927_1831785_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR16062.1|1831885_1832461_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.4e-06
SPR16063.1|1832466_1832994_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16064.1|1833145_1833358_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16065.1|1833500_1833869_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16066.1|1834088_1834196_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16067.1|1834428_1835523_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16068.1|1835726_1836296_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR16069.1|1836451_1836613_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR16070.1|1837031_1837487_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16071.1|1837840_1839556_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
1838773:1838789	attL	TAATATTAAGTATATCA	NA	NA	NA	NA
SPR16072.1|1840114_1841563_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
1838773:1838789	attL	TAATATTAAGTATATCA	NA	NA	NA	NA
SPR16073.1|1841559_1841943_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR16074.1|1841965_1842667_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16075.1|1842892_1843156_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16076.1|1843178_1843418_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16077.1|1843429_1843987_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16078.1|1844120_1845113_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR16079.1|1845093_1845423_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16080.1|1845422_1845818_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16081.1|1845832_1846321_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16082.1|1846317_1846470_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16083.1|1846610_1846871_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR16084.1|1846870_1847167_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16085.1|1847258_1847915_-|integrase	integrase	integrase	A0A1P8CWW9	Bacillus_phage	27.4	1.9e-05
SPR16086.1|1848230_1848599_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16087.1|1849103_1849250_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR16088.1|1849483_1849804_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR16089.1|1850680_1851055_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16090.1|1851066_1851423_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16091.1|1852017_1853025_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR16092.1|1853579_1853819_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16093.1|1853999_1854347_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16094.1|1854697_1854970_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR16095.1|1855166_1858394_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	27.2	3.2e-21
SPR16096.1|1859442_1860837_-	Uncharacterised protein	NA	NA	NA	NA	NA
1860714:1860730	attR	TAATATTAAGTATATCA	NA	NA	NA	NA
SPR16097.1|1861173_1861548_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1860714:1860730	attR	TAATATTAAGTATATCA	NA	NA	NA	NA
SPR16098.1|1861501_1861663_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16099.1|1861753_1861996_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16100.1|1862235_1862475_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16101.1|1863207_1866039_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16102.1|1866225_1866384_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16103.1|1867062_1867500_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16104.1|1867511_1867886_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16105.1|1867877_1868114_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16106.1|1868449_1868824_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16107.1|1868835_1869273_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16108.1|1869368_1870325_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	34.4	2.9e-39
SPR16109.1|1870314_1872366_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR16110.1|1872358_1873237_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR16111.1|1873785_1875384_+	Type surface antigen 56 (56 kDa)	NA	NA	NA	NA	NA
SPR16112.1|1875613_1876342_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16113.1|1876509_1878018_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SPR16114.1|1877986_1878898_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
SPR16115.1|1878875_1879850_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SPR16116.1|1879842_1880673_+	cell division protein FtsQ	NA	NA	NA	NA	NA
SPR16117.1|1880690_1881827_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
SPR16118.1|1882241_1882598_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16119.1|1882609_1882984_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16120.1|1883817_1883967_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16121.1|1883995_1884121_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16122.1|1884194_1884371_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16123.1|1884382_1884634_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16124.1|1885406_1887074_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16125.1|1887634_1888270_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR16126.1|1888428_1889232_+	ankyrin repeat-containing protein 16	NA	A0A0G2Y2X3	Acanthamoeba_polyphaga_mimivirus	24.2	7.1e-07
SPR16127.1|1889416_1889950_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16128.1|1890131_1891025_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16129.1|1890978_1891434_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16130.1|1891433_1893329_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR16131.1|1893315_1893450_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16132.1|1893455_1893962_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16133.1|1893963_1895211_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16134.1|1895220_1896216_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16135.1|1896267_1897536_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16136.1|1897646_1898417_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16137.1|1898683_1901110_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16138.1|1901406_1901763_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16139.1|1902280_1903675_+	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR16140.1|1903724_1904417_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16141.1|1904441_1904573_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16142.1|1904941_1906237_+	ankyrin repeat-containing protein 14	NA	NA	NA	NA	NA
SPR16143.1|1906787_1907411_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16144.1|1907562_1908090_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16145.1|1908095_1908671_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.4e-06
SPR16146.1|1908771_1909629_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR16147.1|1909650_1910379_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR16148.1|1910729_1911446_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16149.1|1912339_1912843_-	membrane protein	NA	NA	NA	NA	NA
SPR16150.1|1912889_1913519_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	2.1e-06
SPR16151.1|1913758_1915195_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	4.3e-71
SPR16152.1|1915203_1916883_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16153.1|1917091_1917274_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16154.1|1917382_1918426_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16155.1|1918468_1918795_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16156.1|1919027_1919414_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16157.1|1919410_1919563_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16158.1|1919566_1919962_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16159.1|1919961_1920285_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16160.1|1920568_1920745_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16161.1|1920958_1921795_-|integrase	integrase	integrase	H2BDA3	Pseudomonas_phage	23.7	5.7e-07
1927676:1927693	attR	AAATAATTAGTTTAGAAT	NA	NA	NA	NA
>prophage 25
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	1937045	1992703	2469803	tRNA,transposase,integrase	Tupanvirus(33.33%)	60	1953094:1953111	1987027:1987044
SPR16178.1|1937045_1937972_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	62.0	5.8e-85
SPR16179.1|1938039_1938315_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR16180.1|1938613_1939552_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16181.1|1939609_1939849_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16182.1|1939817_1940066_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16183.1|1940345_1941605_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16184.1|1941650_1942361_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16185.1|1942417_1943185_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16186.1|1943333_1945559_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16187.1|1945572_1945665_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16188.1|1945865_1946123_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16189.1|1946174_1947194_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16190.1|1947203_1948451_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16191.1|1948452_1948959_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16192.1|1948964_1949099_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16193.1|1949085_1950981_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR16194.1|1950980_1952282_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16195.1|1952278_1952995_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16196.1|1953006_1953159_-	Uncharacterised protein	NA	NA	NA	NA	NA
1953094:1953111	attL	ATAATCTTCAATATTTTT	NA	NA	NA	NA
SPR16197.1|1953121_1953568_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	43.2	7.9e-24
SPR16198.1|1953671_1954898_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR16199.1|1955157_1955289_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR16200.1|1955311_1956256_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16201.1|1956289_1956463_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16202.1|1956553_1957213_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR16203.1|1957209_1958859_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR16204.1|1958830_1959703_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR16205.1|1959683_1960013_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16206.1|1960012_1960486_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16207.1|1960767_1961352_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16208.1|1961394_1961724_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16209.1|1961868_1962345_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16210.1|1962341_1962494_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16211.1|1962497_1962893_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16212.1|1962892_1963216_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16213.1|1963499_1963676_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16214.1|1963889_1964738_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16215.1|1964808_1965072_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16216.1|1965156_1965447_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16217.1|1965816_1966302_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR16218.1|1967366_1967486_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16219.1|1967699_1969931_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16220.1|1970422_1973065_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
SPR16221.1|1973310_1974342_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR16222.1|1974430_1975762_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
SPR16223.1|1976021_1977968_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	8.9e-120
SPR16224.1|1977978_1978524_+	translation initiation factor IF-3	NA	A0A2I7S9Q1	Vibrio_phage	35.2	2.9e-12
SPR16225.1|1978690_1979137_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A2R8FFV2	Cedratvirus	55.5	2.6e-35
SPR16226.1|1979231_1979777_+	ATP synthase subunit delta	NA	NA	NA	NA	NA
SPR16227.1|1979819_1981358_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR16228.1|1981372_1982263_+	ATPase	NA	NA	NA	NA	NA
SPR16229.1|1982273_1982906_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16230.1|1982907_1984521_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16231.1|1984653_1987320_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.5	4.0e-70
1987027:1987044	attR	AAAAATATTGAAGATTAT	NA	NA	NA	NA
SPR16232.1|1987484_1988942_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
SPR16233.1|1988942_1989287_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
SPR16234.1|1989452_1991225_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR16235.1|1991236_1991992_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
SPR16236.1|1992285_1992420_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16237.1|1992397_1992703_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 26
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	2001865	2054484	2469803	tRNA,transposase,integrase	Brevibacillus_phage(11.11%)	50	1993090:1993129	2055087:2055126
1993090:1993129	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR16248.1|2001865_2002630_-|tRNA	tRNA (guanine(37)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
SPR16249.1|2002676_2004527_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16250.1|2004528_2005092_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16251.1|2005142_2006516_-	transporter	NA	NA	NA	NA	NA
SPR16252.1|2006859_2007789_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.8	7.0e-30
SPR16253.1|2007826_2007997_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16254.1|2008123_2008600_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16255.1|2008594_2009317_-	surfeit locus protein 1	NA	NA	NA	NA	NA
SPR16256.1|2009556_2010042_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
SPR16257.1|2010060_2010633_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR16258.1|2010632_2011988_+	DNA repair protein RadA	NA	NA	NA	NA	NA
SPR16259.1|2012025_2012946_-	membrane protein	NA	NA	NA	NA	NA
SPR16260.1|2013095_2014994_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16261.1|2015039_2016968_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16262.1|2017990_2018230_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR16263.1|2019616_2019880_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16264.1|2020013_2020190_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16265.1|2020283_2020772_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16266.1|2021303_2022587_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16267.1|2023730_2024555_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR16268.1|2024655_2025234_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR16269.1|2025352_2026267_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.5	2.6e-85
SPR16270.1|2026345_2026609_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR16271.1|2026904_2027165_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR16272.1|2027267_2027912_-	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	26.3	8.3e-06
SPR16273.1|2027946_2028342_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR16274.1|2028378_2028522_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR16275.1|2028755_2030204_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.6	3.7e-70
SPR16276.1|2030212_2031013_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16277.1|2030972_2031308_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16278.1|2032793_2033213_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	37.4	1.4e-17
SPR16279.1|2033482_2034418_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16280.1|2034570_2036421_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16281.1|2036686_2037469_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16282.1|2037525_2039538_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16283.1|2040221_2041457_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	37.7	2.3e-65
SPR16284.1|2041559_2041937_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR16285.1|2042146_2042602_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16286.1|2042699_2043266_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16287.1|2043529_2044063_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16288.1|2044246_2044684_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16289.1|2044695_2045070_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16290.1|2045123_2045267_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16291.1|2045397_2045598_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16292.1|2046355_2048200_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.2	1.7e-35
SPR16293.1|2048183_2049959_-	DNA primase	NA	S5M810	Pseudoalteromonas_phage	45.3	2.7e-14
SPR16294.1|2050398_2050599_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16295.1|2051386_2052547_-	DNA-processing protein DprA	NA	S6BFL3	Thermus_phage	33.8	2.7e-23
SPR16296.1|2052587_2053190_-	peroxidase	NA	NA	NA	NA	NA
SPR16297.1|2053521_2054484_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
2055087:2055126	attR	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
>prophage 27
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	2057725	2104519	2469803	tRNA,transposase,capsid	Streptococcus_phage(25.0%)	54	NA	NA
SPR16300.1|2057725_2057911_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16301.1|2058374_2058833_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16302.1|2058803_2060177_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.3	1.2e-62
SPR16303.1|2060185_2060986_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16304.1|2060945_2061746_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16305.1|2062023_2062347_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16306.1|2062554_2062764_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR16307.1|2062963_2063260_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16308.1|2063435_2063630_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16309.1|2064286_2065777_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16310.1|2066216_2066600_-	glutaredoxin	NA	NA	NA	NA	NA
SPR16311.1|2066808_2067237_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16312.1|2067335_2068139_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16313.1|2068151_2068754_-	TIGR02217 family protein	NA	NA	NA	NA	NA
SPR16314.1|2068746_2069172_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16315.1|2069171_2069513_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16316.1|2069512_2070058_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16317.1|2070091_2071207_-|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	39.9	1.4e-53
SPR16318.1|2071218_2071773_-	peptidase U35	NA	I6S2W2	Marinomonas_phage	43.8	1.7e-23
SPR16319.1|2072447_2073419_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16320.1|2073502_2074864_-	cell division protein FtsZ	NA	NA	NA	NA	NA
SPR16321.1|2075068_2076334_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SPR16322.1|2077147_2077843_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16323.1|2079112_2079265_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16324.1|2079547_2080393_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16325.1|2080840_2081215_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16326.1|2081226_2081664_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16327.1|2083027_2083246_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16328.1|2083463_2083835_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
SPR16329.1|2083847_2084363_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
SPR16330.1|2084373_2084964_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
SPR16331.1|2084975_2086166_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
SPR16332.1|2086162_2086717_+	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA	NA
SPR16333.1|2086734_2088003_+	NADH-quinone oxidoreductase subunit F	NA	NA	NA	NA	NA
SPR16334.1|2088301_2089063_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16335.1|2089313_2089595_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16336.1|2090143_2091643_+	ADP/ATP carrier protein	NA	NA	NA	NA	NA
SPR16337.1|2091884_2092241_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16338.1|2092282_2092657_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16339.1|2092722_2093076_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16340.1|2093207_2093717_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	25.2	7.7e-07
SPR16341.1|2093772_2094741_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
SPR16342.1|2094769_2095108_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16343.1|2095246_2095987_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
SPR16344.1|2095973_2096840_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
SPR16345.1|2096841_2097690_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
SPR16346.1|2097831_2098314_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SPR16347.1|2098317_2098809_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
SPR16348.1|2099147_2099894_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16349.1|2099993_2100431_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16350.1|2100442_2100817_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16351.1|2102648_2102936_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16352.1|2103566_2103851_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16353.1|2104315_2104519_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 28
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	2126212	2231773	2469803	tRNA,transposase,integrase	Penguinpox_virus(20.0%)	106	2125898:2125931	2169050:2169083
2125898:2125931	attL	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGA	NA	NA	NA	NA
SPR16370.1|2126212_2126383_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16371.1|2126579_2128877_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR16372.1|2129049_2129475_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16373.1|2129431_2130004_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16374.1|2130232_2130349_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16375.1|2130356_2130713_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16376.1|2130934_2134372_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR16377.1|2134984_2135860_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16378.1|2136191_2136356_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16379.1|2138291_2138381_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16380.1|2138639_2139038_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16381.1|2139025_2139403_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16382.1|2139906_2140575_+|integrase	integrase	integrase	A0A0M4R586	Salmonella_phage	27.9	3.8e-14
SPR16383.1|2140718_2141042_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16384.1|2141041_2141434_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR16385.1|2141442_2141595_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16386.1|2141591_2142068_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16387.1|2142212_2142542_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16388.1|2142584_2143169_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16389.1|2143450_2143780_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16390.1|2143749_2144685_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR16391.1|2144681_2145341_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR16392.1|2145426_2145603_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16393.1|2145636_2146581_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16394.1|2146603_2146987_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR16395.1|2146983_2148672_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR16396.1|2148681_2149176_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR16397.1|2149334_2151029_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR16398.1|2151025_2151409_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR16399.1|2151431_2152112_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16400.1|2152443_2154603_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR16401.1|2154583_2154913_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16402.1|2154912_2155095_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16403.1|2155203_2156247_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16404.1|2156289_2156616_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16405.1|2156847_2157234_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16406.1|2157230_2157383_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16407.1|2157386_2157782_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16408.1|2157781_2158105_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16409.1|2158208_2159225_-|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.3	1.3e-10
SPR16410.1|2160459_2161950_+	carboxypeptidase M32	NA	NA	NA	NA	NA
SPR16411.1|2162053_2163418_-	magnesium transporter	NA	NA	NA	NA	NA
SPR16412.1|2163607_2164627_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SPR16413.1|2164646_2167166_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	38.3	6.3e-158
SPR16414.1|2167785_2168517_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA	NA
SPR16415.1|2168895_2169003_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16416.1|2170002_2171466_-	exopolyphosphatase	NA	NA	NA	NA	NA
2169050:2169083	attR	TCTTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR16417.1|2171701_2172094_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16418.1|2172251_2172488_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16419.1|2172499_2172604_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16420.1|2172694_2172937_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16421.1|2172971_2173199_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16422.1|2173244_2173367_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16423.1|2173574_2175287_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16424.1|2175295_2176732_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	2.5e-71
SPR16425.1|2176971_2177601_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	2.1e-06
SPR16426.1|2177647_2178151_+	membrane protein	NA	NA	NA	NA	NA
SPR16427.1|2178831_2179614_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR16428.1|2179714_2180296_+	(p)pGpp hydrolase	NA	A0A292GI44	Xanthomonas_phage	26.6	1.4e-07
SPR16429.1|2180662_2181601_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16430.1|2181658_2181898_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16431.1|2181866_2182115_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16432.1|2182392_2185215_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16433.1|2185747_2186224_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16434.1|2186443_2187004_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16435.1|2186981_2193641_+	Uncharacterised protein	NA	Q9JMP0	Wolbachia_phage	34.1	1.2e-38
SPR16436.1|2193989_2194865_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16437.1|2195030_2197088_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16438.1|2197263_2197416_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16439.1|2198377_2198611_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16440.1|2198687_2199512_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16441.1|2199583_2199886_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16442.1|2200042_2200192_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16443.1|2200206_2200383_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16444.1|2200434_2200995_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16445.1|2201010_2201973_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16446.1|2202128_2203016_+	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR16447.1|2203264_2203918_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16448.1|2203914_2204808_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16449.1|2204761_2205217_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16450.1|2205216_2207112_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR16451.1|2207098_2207233_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16452.1|2207238_2207745_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16453.1|2207746_2208994_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16454.1|2209003_2209999_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16455.1|2210050_2211610_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16456.1|2211952_2212159_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16457.1|2212381_2213182_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16458.1|2213751_2215887_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16459.1|2216568_2218284_+	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	6.3e-85
SPR16460.1|2218493_2218949_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16461.1|2218990_2219467_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR16462.1|2219491_2219776_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR16463.1|2219953_2220163_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR16464.1|2220435_2222256_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR16465.1|2223002_2223221_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR16466.1|2223225_2223579_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR16467.1|2223679_2224537_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR16468.1|2224511_2225288_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR16469.1|2225638_2226355_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16470.1|2227248_2227752_-	membrane protein	NA	NA	NA	NA	NA
SPR16471.1|2227798_2228428_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	26.9	2.1e-06
SPR16472.1|2228667_2230104_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.8	7.4e-71
SPR16473.1|2230274_2230670_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16474.1|2230792_2231188_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16475.1|2231491_2231773_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 29
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	2235679	2292785	2469803	tRNA,transposase,protease,integrase	Bacillus_phage(33.33%)	56	2231290:2231313	2258939:2258962
2231290:2231313	attL	CAAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR16480.1|2235679_2235889_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16481.1|2236126_2236285_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16482.1|2236317_2237349_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16483.1|2237626_2237806_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16484.1|2237884_2238142_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16485.1|2238161_2242280_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16486.1|2243191_2243524_+	iron donor protein CyaY	NA	NA	NA	NA	NA
SPR16487.1|2243516_2245244_+	ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.8	5.6e-41
SPR16488.1|2245597_2245792_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16489.1|2245791_2245908_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16490.1|2246022_2246298_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16491.1|2247663_2252169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16492.1|2252168_2254625_-	virB4 protein precursor	NA	NA	NA	NA	NA
SPR16493.1|2254899_2255916_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SPR16494.1|2255996_2257217_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
SPR16495.1|2257230_2257524_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16496.1|2257537_2258839_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
SPR16497.1|2259067_2260321_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.6	1.2e-120
2258939:2258962	attR	CAAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR16498.1|2260526_2261096_+	elongation factor P	NA	NA	NA	NA	NA
SPR16499.1|2261092_2261878_+	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
SPR16500.1|2261897_2262599_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
SPR16501.1|2262893_2263400_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16502.1|2263448_2263670_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16503.1|2264121_2264322_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16504.1|2264369_2264567_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16505.1|2264578_2264935_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16506.1|2265320_2266400_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	37.5	5.3e-05
SPR16507.1|2266604_2267627_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16508.1|2267623_2268544_+	GTPase Era	NA	NA	NA	NA	NA
SPR16509.1|2268751_2268877_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16510.1|2268914_2269280_-	membrane protein	NA	NA	NA	NA	NA
SPR16511.1|2269376_2269583_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
SPR16512.1|2269864_2270392_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR16513.1|2270780_2271626_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR16514.1|2271632_2272484_+	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
SPR16515.1|2272565_2273039_+	phosphohistidine phosphatase	NA	NA	NA	NA	NA
SPR16516.1|2273051_2276519_+	ATP-dependent DNA helicase UvrD	NA	NA	NA	NA	NA
SPR16517.1|2276699_2277896_+	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR16518.1|2277948_2279157_+	poly(A) polymerase	NA	A0A2L0UZ92	Agrobacterium_phage	41.6	1.3e-33
SPR16519.1|2279153_2280050_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR16520.1|2280585_2280894_+	DNA-binding protein	NA	A7KV42	Bacillus_phage	37.1	2.0e-10
SPR16521.1|2281076_2281952_+	Chaperone SurA	NA	NA	NA	NA	NA
SPR16522.1|2282080_2282902_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
SPR16523.1|2282962_2284312_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
SPR16524.1|2284421_2285483_+|protease	zinc metalloprotease	protease	NA	NA	NA	NA
SPR16525.1|2285495_2287814_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
SPR16526.1|2287836_2288163_+	thiol reductase thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.6	2.0e-16
SPR16527.1|2288395_2288497_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16528.1|2289233_2289359_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
SPR16529.1|2290445_2290631_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16530.1|2290736_2291483_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16531.1|2291690_2291906_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16532.1|2291917_2292022_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16533.1|2292112_2292355_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16534.1|2292389_2292617_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16535.1|2292662_2292785_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 30
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	2301294	2360637	2469803	transposase,integrase	Pseudomonas_phage(27.27%)	50	2323396:2323431	2356820:2356855
SPR16547.1|2301294_2302245_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	5.9e-85
SPR16548.1|2302813_2303437_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16549.1|2303463_2305647_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16550.1|2306001_2306574_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16551.1|2306530_2306956_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16552.1|2306971_2308006_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16553.1|2308219_2309929_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16554.1|2309937_2311386_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.1	1.8e-72
SPR16555.1|2311618_2312194_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	32.1	1.6e-05
SPR16556.1|2312228_2312873_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	5.7e-07
SPR16557.1|2312920_2313469_+	membrane protein	NA	NA	NA	NA	NA
SPR16558.1|2313472_2314282_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	3.1e-18
SPR16559.1|2314656_2315433_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR16560.1|2315407_2316265_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR16561.1|2316365_2316950_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	7.5e-06
SPR16562.1|2317055_2318066_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	6.3e-85
SPR16563.1|2318133_2318589_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16564.1|2318798_2320514_-	HNH endonuclease	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
SPR16565.1|2321214_2324016_+	conjugal transfer protein TraA	NA	Q7T5H7	Cryptophlebia_leucotreta_granulosis_virus	23.3	3.6e-05
2323396:2323431	attL	GAGAAAGAACGGACAAAGACAACTGTTTTTAGTAAA	NA	NA	NA	NA
SPR16566.1|2324653_2327323_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16567.1|2327374_2328418_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16568.1|2328427_2330182_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16569.1|2330187_2331327_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR16570.1|2331339_2333973_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR16571.1|2333972_2335274_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR16572.1|2335270_2335954_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16573.1|2335965_2337660_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR16574.1|2337656_2338040_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR16575.1|2338062_2339007_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16576.1|2339040_2339214_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16577.1|2339297_2339957_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR16578.1|2339953_2342443_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR16579.1|2342423_2342753_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16580.1|2342752_2344078_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16581.1|2344116_2344452_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16582.1|2344585_2344813_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16583.1|2344948_2345437_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16584.1|2345433_2345985_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16585.1|2345984_2346308_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16586.1|2346387_2346858_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR16587.1|2346860_2348000_-|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.0	2.0e-18
SPR16588.1|2348393_2350109_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16589.1|2350158_2351553_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR16590.1|2352070_2352427_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16591.1|2352636_2353014_-	HNH endonuclease	NA	NA	NA	NA	NA
SPR16592.1|2353116_2354352_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	37.7	2.3e-65
SPR16593.1|2355034_2357479_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
2356820:2356855	attR	GAGAAAGAACGGACAAAGACAACTGTTTTTAGTAAA	NA	NA	NA	NA
SPR16594.1|2357597_2359109_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16595.1|2359122_2359674_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16596.1|2359725_2360637_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 31
LS398548	Orientia tsutsugamushi isolate Karp genome assembly, chromosome: I	2469803	2365623	2410594	2469803	tRNA,transposase,integrase	Bordetella_phage(28.57%)	51	2403475:2403494	2410625:2410644
SPR16600.1|2365623_2366049_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16601.1|2366005_2366578_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR16602.1|2366754_2367165_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16603.1|2367241_2368228_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR16604.1|2368237_2369257_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16605.1|2369308_2370577_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16606.1|2370687_2371458_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR16607.1|2371724_2373287_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16608.1|2373332_2374592_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR16609.1|2374870_2375065_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16610.1|2375157_2375331_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR16611.1|2375398_2376421_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	6.4e-85
SPR16612.1|2376542_2377118_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	29.4	1.6e-05
SPR16613.1|2377218_2378076_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR16614.1|2378050_2378827_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR16615.1|2379179_2379464_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16616.1|2379776_2381762_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR16617.1|2382554_2383187_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR16618.1|2383190_2383694_-	membrane protein	NA	NA	NA	NA	NA
SPR16619.1|2383740_2384247_-	ankyrin	NA	A0A2H4X2N8	Flamingopox_virus	29.7	2.9e-06
SPR16620.1|2384423_2384999_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.5	6.2e-05
SPR16621.1|2385012_2385171_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16622.1|2385232_2386669_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.6	2.1e-73
SPR16623.1|2386677_2388393_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16624.1|2388747_2388930_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
SPR16625.1|2389061_2389277_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR16626.1|2389276_2389525_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16627.1|2389747_2389915_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16628.1|2390236_2390479_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16629.1|2390569_2390695_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16630.1|2390684_2391059_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR16631.1|2391018_2391459_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR16632.1|2392891_2397817_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR16633.1|2397898_2399242_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
SPR16634.1|2399267_2400206_+	recombinase XerC	NA	A0A0K0N6I5	Gordonia_phage	34.9	2.5e-11
SPR16635.1|2400240_2400672_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
SPR16636.1|2400761_2401289_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	49.7	1.6e-39
SPR16637.1|2401312_2402185_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SPR16638.1|2402168_2403110_+	ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
2403475:2403494	attL	TATAGTCATTTACAATGAAG	NA	NA	NA	NA
SPR16639.1|2403742_2403916_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16640.1|2403905_2404199_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR16641.1|2404478_2405483_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16642.1|2405671_2407051_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16643.1|2407656_2407815_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR16644.1|2408463_2408691_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR16645.1|2408726_2408864_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR16646.1|2409303_2409462_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR16647.1|2409476_2409701_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR16648.1|2409727_2409991_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16649.1|2409991_2410264_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR16650.1|2410282_2410594_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2410625:2410644	attR	CTTCATTGTAAATGACTATA	NA	NA	NA	NA
