The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	8803	270106	2465012	terminase,transposase,integrase,tRNA	Indivirus(25.0%)	292	120220:120279	221275:221290
SPR02153.1|8803_8959_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02155.1|9332_9596_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02156.1|9580_9988_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.6	8.6e-09
SPR02158.1|10211_10385_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02160.1|10338_10503_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02163.1|10951_12751_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02165.1|13233_13413_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02167.1|13461_13566_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02170.1|13577_13748_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02172.1|14189_14351_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02174.1|14364_14871_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR02180.1|15094_15232_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02184.1|15351_15690_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR02188.1|15638_15899_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02189.1|16025_16574_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	39.9	4.4e-32
SPR02192.1|16594_17557_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	41.5	2.5e-54
SPR02196.1|17686_18610_-	permease	NA	NA	NA	NA	NA
SPR02198.1|18786_20148_-	translocation protein TolB	NA	NA	NA	NA	NA
SPR02201.1|20463_21891_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	1.4e-37
SPR02204.1|21982_22786_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR02208.1|22961_23570_+	Type surface antigen 22	NA	NA	NA	NA	NA
SPR02211.1|23679_24501_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02215.1|24537_24858_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR02220.1|25579_26527_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	41.9	1.1e-54
SPR02225.1|26780_26945_+	HNH endonuclease	NA	NA	NA	NA	NA
SPR02229.1|27364_27820_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02237.1|28383_28527_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02240.1|29340_30882_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02243.1|31131_32034_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	58.0	1.3e-86
SPR02247.1|32155_32551_-	hydrolase	NA	NA	NA	NA	NA
SPR02252.1|33106_34924_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.5	2.5e-188
SPR02256.1|34946_35936_+	ribonucleotide-diphosphate reductase subunit beta	NA	M1I8A4	Pelagibacter_phage	53.5	2.9e-98
SPR02262.1|36093_36306_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02268.1|36764_36944_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02272.1|37270_37909_+|integrase	integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.9	1.8e-16
SPR02275.1|37911_38382_+	peroxiredoxin	NA	NA	NA	NA	NA
SPR02280.1|38461_39517_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02284.1|39531_40404_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02289.1|40426_40810_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR02295.1|40939_41152_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR02300.1|41175_41688_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02305.1|41827_42040_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02309.1|42033_42381_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02313.1|42398_42611_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02318.1|42951_44583_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR02323.1|44934_47517_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR02328.1|47557_47740_-	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR02333.1|48159_48615_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02338.1|48945_49182_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02341.1|49530_50532_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02346.1|50545_51043_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02350.1|51214_51589_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02355.1|51575_52004_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.7e-12
SPR02359.1|52288_52732_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR02430.1|52718_54380_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02434.1|54366_54753_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02440.1|54941_55571_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02444.1|55567_56296_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02448.1|56307_56820_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02450.1|56875_57376_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02454.1|57389_59495_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02457.1|59760_62628_-	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	24.1	3.7e-05
SPR02461.1|62906_63362_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02465.1|63429_64380_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
SPR02470.1|64500_65076_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	5.7e-06
SPR02472.1|65176_66034_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02475.1|66055_66784_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02478.1|67134_67938_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	25.7	4.5e-17
SPR02483.1|68036_69293_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02487.1|69336_69789_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02492.1|69842_70124_-	ankyrin	NA	NA	NA	NA	NA
SPR02495.1|70454_70844_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	2.6e-07
SPR02500.1|70830_71205_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02504.1|71261_71705_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	36.2	4.8e-05
SPR02509.1|71938_73387_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.6	2.2e-70
SPR02514.1|73395_75111_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02516.1|75603_75729_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02518.1|75944_76070_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02521.1|77086_77467_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	8.9e-08
SPR02525.1|77463_79026_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
SPR02529.1|80064_80433_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02532.1|80426_80561_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02537.1|80574_81081_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
SPR02541.1|81496_81781_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02544.1|81934_82042_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02549.1|82426_83629_-	aspartate aminotransferase	NA	NA	NA	NA	NA
SPR02553.1|83735_84773_+	Ubiquinone biosynthesis O-methyltransferase	NA	NA	NA	NA	NA
SPR02559.1|84832_85666_+	ABC transporter	NA	NA	NA	NA	NA
SPR02563.1|85668_86253_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02567.1|86280_87483_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR02569.1|87523_88036_+	Uncharacterised protein	NA	M1U2M5	Synechococcus_phage	45.8	2.0e-18
SPR02576.1|88095_88821_+	DNA repair protein RecO	NA	NA	NA	NA	NA
SPR02582.1|89243_89399_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR02588.1|89513_89693_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02592.1|89696_90071_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02594.1|90057_90564_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	1.3e-14
SPR02598.1|90585_90849_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02602.1|90860_91235_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02606.1|92130_92283_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR02609.1|92353_92677_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02614.1|92715_93396_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02619.1|93644_94016_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
SPR02622.1|94039_94561_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
SPR02627.1|94564_96691_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.9	1.1e-59
SPR02631.1|96956_98432_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
SPR02635.1|98832_99012_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02638.1|98960_99476_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	1.7e-14
SPR02643.1|99632_99830_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02648.1|99995_100112_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02652.1|100172_100511_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.2	4.8e-05
SPR02655.1|101219_101417_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR02659.1|101428_101548_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02661.1|101620_101734_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02664.1|102859_103081_-	cold-shock protein	NA	A0A218MMZ6	uncultured_virus	35.7	1.1e-05
SPR02669.1|104333_104438_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02674.1|104817_105684_+	aminomethyltransferase	NA	NA	NA	NA	NA
SPR02677.1|105858_106071_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02681.1|106380_108231_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02685.1|108468_108840_+	Purine nucleoside phosphoramidase	NA	NA	NA	NA	NA
SPR02687.1|108899_109937_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
SPR02690.1|110076_111015_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
SPR02695.1|111025_112612_-	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	41.2	2.1e-10
SPR02699.1|112804_114226_-|terminase	terminase	terminase	A0A1B1IUW7	uncultured_Mediterranean_phage	30.7	2.1e-54
SPR02701.1|114555_115176_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
SPR02706.1|115175_115736_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
SPR02711.1|115745_116846_+	GTP-binding protein YchF	NA	NA	NA	NA	NA
SPR02717.1|116893_117034_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02720.1|117475_117904_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	3.9e-12
SPR02723.1|117890_118265_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02728.1|118824_119619_+	exodeoxyribonuclease III	NA	R4TWA8	Phaeocystis_globosa_virus	28.1	4.1e-15
SPR02733.1|119976_120363_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
120220:120279	attL	TATATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAA	NA	NA	NA	NA
SPR02737.1|120359_120866_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	2.2e-14
120220:120279	attL	TATATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAA	NA	NA	NA	NA
SPR02741.1|121360_122680_+|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.3	6.0e-11
120220:120279	attL	TATATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAA	NA	NA	NA	NA
SPR02747.1|122747_123071_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02752.1|123070_123622_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02755.1|123618_124095_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02758.1|124458_124791_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02764.1|124829_126152_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02768.1|126151_126472_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02773.1|126452_128942_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR02778.1|128938_129598_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR02781.1|129688_129862_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02786.1|129862_130840_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02789.1|130862_131246_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR02793.1|131242_132934_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR02796.1|132945_133629_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02801.1|133625_134927_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR02805.1|134926_137551_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR02808.1|137563_138703_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR02813.1|138706_140461_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR02817.1|140470_141526_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR02820.1|141577_144247_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR02824.1|144512_147332_-	conjugal transfer protein TraA	NA	Q7T5H7	Cryptophlebia_leucotreta_granulosis_virus	23.3	8.1e-05
SPR02829.1|147610_148066_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02833.1|148133_149228_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	6.8e-85
SPR02837.1|149348_149936_-	hydrolase	NA	A0A292GI44	Xanthomonas_phage	28.6	2.2e-05
SPR02842.1|149977_150472_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02848.1|150490_151429_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02853.1|151445_152246_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02856.1|152321_152438_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02859.1|152460_153129_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02863.1|153143_153845_-	histidine kinase	NA	NA	NA	NA	NA
SPR02866.1|153909_154188_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02871.1|154554_155364_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.4	2.2e-19
SPR02874.1|155367_155871_-	membrane protein	NA	NA	NA	NA	NA
SPR02879.1|155918_156563_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	5.7e-07
SPR02884.1|156597_157173_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	7.4e-06
SPR02889.1|157405_158854_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	5.1e-72
SPR02894.1|158862_160578_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02898.1|160733_161060_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02904.1|161063_161243_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
161075:161188	attR	TTTTTATACTCTTTTCATATTGGCATATTATGTACCTATTTCCTACGTTCGTGCTATATATCGTATTACGACTTATATTGAATATTTTATATGCTTTAACAATTGATAGTCCAT	NA	NA	NA	NA
SPR02908.1|161284_163573_-	repeat-containing protein D	NA	NA	NA	NA	NA
161075:161188	attR	TTTTTATACTCTTTTCATATTGGCATATTATGTACCTATTTCCTACGTTCGTGCTATATATCGTATTACGACTTATATTGAATATTTTATATGCTTTAACAATTGATAGTCCAT	NA	NA	NA	NA
SPR02909.1|164204_165131_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.7	7.5e-85
161075:161188	attR	TTTTTATACTCTTTTCATATTGGCATATTATGTACCTATTTCCTACGTTCGTGCTATATATCGTATTACGACTTATATTGAATATTTTATATGCTTTAACAATTGATAGTCCAT	NA	NA	NA	NA
SPR02913.1|165251_165839_-	hydrolase	NA	A0A2I2L310	Orpheovirus	29.0	3.4e-06
SPR02917.1|165880_166375_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02920.1|166393_167332_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02924.1|167339_167927_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02927.1|168055_168757_-	histidine kinase	NA	NA	NA	NA	NA
SPR02931.1|168821_169631_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR02934.1|169998_170808_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR02938.1|170911_171319_-	membrane protein	NA	NA	NA	NA	NA
SPR02941.1|171365_172010_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	32.2	3.7e-14
SPR02946.1|172047_172623_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR02949.1|172856_174305_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.6	2.2e-70
SPR02953.1|174313_175669_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02957.1|175902_176028_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02960.1|176235_176358_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR02963.1|177894_178545_+	electron transporter	NA	NA	NA	NA	NA
SPR02967.1|178996_179287_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02971.1|179421_179796_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02974.1|179950_180289_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.3e-05
SPR02977.1|180452_180788_+|integrase	integrase	integrase	G8C7S0	Escherichia_phage	29.4	9.6e-06
SPR02979.1|180845_181106_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR02983.1|181130_181637_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	2.5e-13
SPR02985.1|181623_181998_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR02989.1|182321_182624_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR02992.1|182623_183043_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR02996.1|183023_183176_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR02998.1|183172_183664_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03001.1|183808_184135_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03006.1|184177_185503_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03009.1|185502_185832_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03012.1|185812_186841_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03015.1|186790_187024_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03019.1|187001_188225_-	ankyrin repeat-containing protein	NA	Q6VZY7	Canarypox_virus	29.8	1.1e-06
SPR03022.1|188454_189138_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03025.1|189160_189544_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR03029.1|189540_189864_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03032.1|189937_190135_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03035.1|190146_190836_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03037.1|190832_191018_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR03040.1|191717_191879_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03044.1|192080_192758_+	histidine phosphotransferase	NA	NA	NA	NA	NA
SPR03046.1|192821_194222_+	class II fumarate hydratase	NA	NA	NA	NA	NA
SPR03050.1|194387_195866_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	29.3	1.9e-37
SPR03054.1|198827_199196_-	peroxiredoxin	NA	NA	NA	NA	NA
SPR03057.1|199284_199716_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03059.1|200000_200126_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03063.1|200341_200467_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03066.1|200859_201156_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03069.1|201261_201537_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03072.1|201592_201787_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR03075.1|201899_202580_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03078.1|202671_202815_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03082.1|203381_203696_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03085.1|203667_203931_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03089.1|204380_204755_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03092.1|204732_205248_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	2.5e-13
SPR03095.1|205821_206916_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
SPR03097.1|207107_207236_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03100.1|207596_209360_+	repeat-containing protein D	NA	NA	NA	NA	NA
SPR03103.1|210521_210656_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03106.1|210717_211047_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03110.1|211043_211595_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03114.1|212909_213296_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03117.1|213436_213685_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03119.1|214321_215215_+	lipase LipB	NA	A0A2I7SAF7	Vibrio_phage	28.3	8.5e-09
SPR03123.1|215608_215725_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03126.1|215787_216180_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR03129.1|216176_216683_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	1.3e-14
SPR03131.1|216669_217044_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03134.1|217312_217438_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03137.1|218002_218479_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03141.1|218488_219220_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03144.1|219844_220891_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03145.1|221441_222038_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03148.1|222074_223532_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR03150.1|223539_223704_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03154.1|223707_224457_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
SPR03158.1|224462_224759_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
SPR03160.1|225507_227091_-|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR03162.1|227216_227780_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
SPR03166.1|227742_228288_+	ubiquinone biosynthesis protein UbiB	NA	NA	NA	NA	NA
SPR03169.1|228364_229057_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
SPR03171.1|229108_229882_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR03175.1|229931_230417_+	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR03177.1|230413_230662_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03179.1|230699_233528_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03182.1|233436_233634_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03186.1|233719_235384_-	NADH dehydrogenase	NA	NA	NA	NA	NA
SPR03189.1|235464_236343_-	succinyl-CoA synthetase subunit alpha	NA	A0A2K9L5E9	Tupanvirus	31.9	2.5e-21
SPR03191.1|236357_237518_-	succinyl-CoA ligase subunit beta	NA	NA	NA	NA	NA
SPR03195.1|237574_238783_-	2-polyprenyl-6-methoxyphenol 4-hydroxylase	NA	NA	NA	NA	NA
SPR03199.1|239137_239725_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03201.1|239852_243056_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	34.4	3.4e-177
SPR03204.1|243094_243700_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03208.1|243846_244053_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
SPR03211.1|244081_244591_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
SPR03212.1|244688_245930_+	MFS transporter	NA	NA	NA	NA	NA
SPR03216.1|246155_246878_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03220.1|246960_248214_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03223.1|248302_249481_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03227.1|249520_251731_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
SPR03230.1|252064_252334_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
SPR03233.1|252357_253266_-|tRNA	tRNA pseudouridine(55) synthase	tRNA	NA	NA	NA	NA
SPR03235.1|253961_254126_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03237.1|254510_254951_-	transcriptional regulator	NA	A0A223W054	Agrobacterium_phage	43.2	5.8e-11
SPR03241.1|255211_255469_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03244.1|255520_256540_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR03246.1|256724_256877_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03250.1|257079_257361_+	membrane protein	NA	NA	NA	NA	NA
SPR03253.1|257364_258174_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	9.1e-18
SPR03256.1|258540_258717_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03258.1|258868_259267_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03261.1|259288_260146_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03263.1|260246_260822_+	(p)pGpp hydrolase	NA	A0A292GI44	Xanthomonas_phage	34.9	3.3e-06
SPR03266.1|260942_262001_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.5e-84
SPR03270.1|262068_262524_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03272.1|262802_265517_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03275.1|265485_265647_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03278.1|266401_269071_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03282.1|269122_270106_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	278294	368697	2465012	transposase,integrase	Streptococcus_phage(27.27%)	105	278861:278920	326849:326933
SPR03305.1|278294_278801_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	8.5e-14
SPR03309.1|278787_279162_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
278861:278920	attL	TAATAATTTATTCTAGTTCTTTGTAATCTATTACCTAGTATAATACTTAATTCTTTAGCT	NA	NA	NA	NA
SPR03312.1|279195_279528_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03314.1|279557_279818_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03318.1|279814_280198_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR03321.1|280220_281078_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03323.1|281107_282307_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03327.1|282316_282616_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03331.1|283052_284336_+|integrase	integrase	integrase	A0A076YL28	Mesorhizobium_phage	24.5	2.6e-11
SPR03333.1|284460_284763_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03335.1|284762_285182_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03338.1|285162_285315_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03341.1|285311_285788_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03344.1|285932_286259_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03347.1|286301_287621_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03350.1|287620_287950_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03354.1|287930_288803_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03357.1|288774_289209_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03358.1|289212_289734_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03361.1|289632_290295_-	ankyrin repeat-containing protein	NA	A0A1V0QGP6	Shearwaterpox_virus	30.1	1.7e-14
SPR03363.1|291195_291873_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03364.1|291895_292279_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR03366.1|292275_293964_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03368.1|294218_295001_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR03371.1|295018_295444_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR03373.1|295553_296114_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	40.4	3.4e-24
SPR03376.1|296125_296842_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03379.1|296838_298140_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR03381.1|298139_300791_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR03384.1|300813_301959_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR03388.1|301962_303717_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03390.1|303726_304758_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03393.1|304809_305820_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03396.1|306092_307490_+	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR03398.1|307572_310125_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03400.1|310152_310392_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03404.1|310670_311126_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03406.1|311193_312240_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.9e-84
SPR03409.1|312360_312936_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR03413.1|313036_313894_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03416.1|313915_314644_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03418.1|315646_315844_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	50.0	3.5e-08
SPR03421.1|315952_316474_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03424.1|317103_317916_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	30.6	5.3e-26
SPR03426.1|318019_318427_-	membrane protein	NA	NA	NA	NA	NA
SPR03428.1|318473_319118_-	ankyrin	NA	Q9JML4	Wolbachia_phage	46.7	2.2e-06
SPR03432.1|319155_319731_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	4.8e-05
SPR03435.1|320147_320663_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	1.7e-14
SPR03438.1|320640_321015_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03441.1|321086_322385_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	38.4	1.4e-65
SPR03445.1|322393_323071_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03448.1|323599_323842_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03451.1|323850_324072_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03455.1|324079_324238_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03457.1|324337_324712_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03460.1|324698_324815_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03463.1|324868_325207_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.3e-05
SPR03466.1|325304_325943_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03469.1|326317_326707_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03472.1|326816_326909_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03476.1|327113_327620_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
326849:326933	attR	AGCTAAAGAATTAAGTATTATACTAGGTAATAGATTACAAAGAACTAGAATAAATTATTAGACCTCTTTCGAAACTGGTTAAGGT	NA	NA	NA	NA
SPR03480.1|327830_328127_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR03483.1|328250_328988_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03487.1|329849_330059_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03491.1|330068_330980_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03494.1|331031_333701_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03497.1|334455_334617_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03499.1|334585_337318_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03500.1|337596_338040_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03502.1|338376_339144_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR03504.1|339423_339636_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03506.1|339743_340730_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR03509.1|340850_341438_-	hydrolase	NA	NA	NA	NA	NA
SPR03512.1|341479_341974_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03515.1|341992_342928_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03517.1|342935_343523_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03521.1|343652_344354_-	histidine kinase	NA	NA	NA	NA	NA
SPR03524.1|344418_345228_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03527.1|345595_346405_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR03529.1|346408_346957_-	membrane protein	NA	NA	NA	NA	NA
SPR03531.1|347003_347648_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	32.2	3.7e-14
SPR03533.1|347685_348261_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	1.6e-05
SPR03535.1|348494_349931_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	2.3e-72
SPR03539.1|349939_351499_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03542.1|351607_351799_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR03545.1|351965_353678_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03547.1|353908_354853_+	ankyrin	NA	M1HKG5	Paramecium_bursaria_Chlorella_virus	42.6	2.1e-05
SPR03550.1|354899_355415_+	membrane protein	NA	NA	NA	NA	NA
SPR03553.1|355432_355567_-	N-6 DNA methylase	NA	NA	NA	NA	NA
SPR03555.1|355580_356240_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	32.3	1.1e-21
SPR03559.1|356788_357505_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03562.1|357636_357792_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03566.1|357853_357988_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03568.1|358181_358580_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03571.1|358601_359459_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03573.1|359559_360135_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	5.7e-06
SPR03576.1|360255_361254_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR03580.1|361321_361717_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03582.1|362054_362354_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03585.1|362331_362457_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03588.1|362592_364179_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03591.1|364235_364991_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03595.1|365297_366359_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03597.1|366538_367744_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03599.1|367728_368697_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	401333	505950	2465012	transposase,integrase,tRNA,protease	Streptococcus_phage(15.0%)	108	456643:456682	513767:513806
SPR03711.1|401333_402317_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR03714.1|402368_405038_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03718.1|405303_405576_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03721.1|406167_407607_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR03725.1|408019_408502_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03727.1|408558_409269_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03731.1|409258_410581_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03735.1|410858_411314_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03738.1|411733_411916_+	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR03741.1|411956_414539_+	preprotein translocase SecA subunit-like protein	NA	NA	NA	NA	NA
SPR03744.1|414890_416522_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR03747.1|416862_417075_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03750.1|417092_417713_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03753.1|417865_418393_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03755.1|418398_418974_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	37.1	3.3e-06
SPR03757.1|419074_419932_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03760.1|419993_420683_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR03763.1|421049_421571_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	34.6	5.8e-10
SPR03765.1|421516_421858_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR03769.1|421861_422026_-	membrane protein	NA	NA	NA	NA	NA
SPR03773.1|422506_423343_-	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR03776.1|423488_424133_-	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	7.0e-05
SPR03779.1|424170_424746_-	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR03781.1|424981_425113_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR03785.1|425126_425645_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03788.1|426180_426306_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03790.1|426360_426600_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03794.1|426883_427429_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	2.9e-20
SPR03800.1|427425_428349_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.3	1.5e-08
SPR03804.1|428894_431426_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03806.1|431594_432089_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
SPR03810.1|432307_433264_+	malate dehydrogenase	NA	NA	NA	NA	NA
SPR03813.1|433356_435723_+	DNA topoisomerase I	NA	E3T4K4	Cafeteria_roenbergensis_virus	32.1	5.8e-89
SPR03820.1|435722_437108_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03826.1|437042_437948_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	1.5e-29
SPR03829.1|437944_438961_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
SPR03832.1|439159_441943_+	Uncharacterised protein	NA	A0A0B5A7K5	Paracoccus_phage	28.8	5.2e-97
SPR03835.1|442206_442788_-	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
SPR03837.1|442981_444382_-	Type surface antigen 47 (47 kDa/htrA)	NA	NA	NA	NA	NA
SPR03840.1|444399_445266_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
SPR03842.1|445289_446345_-	HflK protein	NA	NA	NA	NA	NA
SPR03846.1|446527_447544_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR03847.1|449417_449519_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03850.1|449523_449808_+	repeat-containing protein D	NA	NA	NA	NA	NA
SPR03853.1|449792_450323_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03857.1|450637_451012_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03860.1|450989_451505_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	5.0e-14
SPR03861.1|452705_453665_-	stomatin 2	NA	NA	NA	NA	NA
SPR03864.1|453912_454461_+	cytochrome c	NA	NA	NA	NA	NA
SPR03867.1|455417_455924_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
SPR03870.1|455910_456285_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
456643:456682	attL	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR03873.1|456979_457084_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03876.1|457034_457355_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03879.1|457341_457638_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.8	4.2e-05
SPR03882.1|457743_457950_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR03885.1|458082_458412_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03888.1|458490_459861_-	ankyrin repeat-containing protein 09	NA	A0A1V0S7M1	Shearwaterpox_virus	29.2	3.0e-05
SPR03890.1|459968_460595_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03893.1|460579_461560_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR03895.1|461569_463048_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03899.1|463125_464691_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR03929.1|464677_465058_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR03932.1|465614_466448_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03937.1|466428_466899_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR03939.1|467002_467326_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03941.1|467325_467745_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR03943.1|467725_467878_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03946.1|467874_468366_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03949.1|468510_468837_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03951.1|468879_470205_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03952.1|470204_470534_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03956.1|470514_471387_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03959.1|471358_471793_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03962.1|471796_473005_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR03964.1|473150_474251_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03967.1|474537_475182_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR03971.1|475269_475443_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR03973.1|475443_476421_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR03977.1|476443_476827_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR03981.1|476823_478518_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR03985.1|478818_480051_+	ankyrin repeat-containing protein 16	NA	NA	NA	NA	NA
SPR03988.1|480296_482510_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR03990.1|482774_485615_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR03993.1|485892_486348_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR03996.1|486420_487419_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR03999.1|487539_488115_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	5.7e-06
SPR04002.1|488215_489073_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04005.1|489094_489493_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04006.1|489686_489821_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04009.1|490173_490986_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	33.5	5.1e-29
SPR04012.1|490989_491538_-	membrane protein	NA	NA	NA	NA	NA
SPR04014.1|491640_492285_-	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	2.4e-05
SPR04016.1|492322_492898_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	2.1e-05
SPR04017.1|493133_494582_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.1	2.0e-71
SPR04019.1|494590_495160_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04022.1|495160_496306_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04026.1|496397_497189_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04027.1|497862_498087_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
SPR04033.1|498120_498726_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
SPR04036.1|498852_499602_+	transcriptional regulator	NA	NA	NA	NA	NA
SPR04039.1|499700_502418_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	35.3	6.2e-103
SPR04042.1|502451_503732_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.3	2.3e-108
SPR04046.1|503936_504200_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04050.1|504323_504593_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04052.1|504605_504761_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04056.1|505025_505160_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04060.1|505357_505795_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04063.1|505806_505950_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
513767:513806	attR	TAGACCTCTTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 4
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	513679	561585	2465012	transposase,integrase,tRNA	Tupanvirus(16.67%)	52	518467:518505	554779:554817
SPR04084.1|513679_513769_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04087.1|514121_514754_-	3'-5' exonuclease	NA	NA	NA	NA	NA
SPR04090.1|514760_515060_-	Cell division protein FtsB	NA	NA	NA	NA	NA
SPR04093.1|515067_515721_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SPR04096.1|515723_516419_-	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	43.9	3.5e-18
SPR04100.1|516594_518400_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.2	1.5e-41
518467:518505	attL	AGACCTCTTTCGAAACTGGTTAAGGTAGATCAAAATTAT	NA	NA	NA	NA
SPR04101.1|519435_523140_-	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	31.0	9.0e-129
SPR04105.1|523129_525694_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9L2Y7	Tupanvirus	50.4	2.1e-246
SPR04107.1|525725_526601_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SPR04110.1|526837_527611_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04113.1|527958_528957_+	peptidase S66	NA	NA	NA	NA	NA
SPR04115.1|529816_530056_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR04118.1|530057_530204_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR04120.1|530464_530569_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04122.1|530516_530750_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04124.1|530763_531102_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR04127.1|531256_531631_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04129.1|531969_532152_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04133.1|532209_532317_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04135.1|532387_533587_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04138.1|534007_534703_-	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
SPR04141.1|534914_535391_-	RDD family protein	NA	NA	NA	NA	NA
SPR04143.1|536552_538769_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04146.1|539821_542692_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.5	1.1e-307
SPR04150.1|543348_543672_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04152.1|543809_545048_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	25.6	7.6e-16
SPR04155.1|545176_545377_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04159.1|545437_545860_-	DNA helicase	NA	G9BWB0	Planktothrix_phage	33.1	1.1e-09
SPR04163.1|545868_546144_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04166.1|546198_546441_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04169.1|546459_546750_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04172.1|546725_547076_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04173.1|547234_547741_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	5.5e-13
SPR04176.1|547727_548102_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04179.1|548158_548605_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04181.1|548997_549786_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04183.1|550564_550963_+	membrane protein	NA	NA	NA	NA	NA
SPR04186.1|551276_551651_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04189.1|551662_551779_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04192.1|551809_552100_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04194.1|552128_552284_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04196.1|552372_552507_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04199.1|552602_553193_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	48.9	1.3e-26
SPR04202.1|553681_553894_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR04205.1|554402_554603_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR04208.1|554797_554926_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
554779:554817	attR	AGACCTCTTTCGAAACTGGTTAAGGTAGATCAAAATTAT	NA	NA	NA	NA
SPR04211.1|555182_555359_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04214.1|555361_555619_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04217.1|555787_557929_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.0	1.6e-106
SPR04220.1|558157_558322_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR04224.1|558734_560174_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	32.7	1.4e-50
SPR04227.1|560238_561585_-|tRNA	glutamate--tRNA ligase 2	tRNA	NA	NA	NA	NA
>prophage 5
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	582502	622766	2465012	transposase,integrase,tRNA	Indivirus(33.33%)	52	602272:602320	635086:635134
SPR04267.1|582502_584038_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	39.2	3.0e-94
SPR04271.1|584080_584839_+	DNA-binding protein	NA	NA	NA	NA	NA
SPR04275.1|585273_585444_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04278.1|585443_585566_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04281.1|585596_585713_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR04288.1|585724_586099_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04290.1|586967_587834_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
SPR04293.1|588087_588195_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04297.1|588885_589551_+	septal ring lytic transglycosylase RlpA family lipoprotein	NA	F5B3X9	Synechococcus_phage	40.2	4.2e-13
SPR04301.1|590098_590515_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR04305.1|590653_591775_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04307.1|591788_591914_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04310.1|592005_592581_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR04315.1|592618_593263_+	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	32.2	3.7e-14
SPR04323.1|593359_594196_+	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR04327.1|594676_594841_+	membrane protein	NA	NA	NA	NA	NA
SPR04330.1|594844_595654_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	7.4e-20
SPR04333.1|596028_596757_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR04337.1|596778_597636_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR04340.1|597736_598312_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	37.1	3.3e-06
SPR04343.1|598398_598944_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04346.1|599046_599442_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04348.1|599779_600079_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04350.1|600056_600182_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04353.1|600317_601724_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04355.1|601791_602166_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
602272:602320	attL	TACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGT	NA	NA	NA	NA
SPR04356.1|602320_602659_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.2	4.8e-05
SPR04358.1|602655_603711_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04361.1|603976_606646_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR04364.1|606697_607633_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR04365.1|607642_609397_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04367.1|609402_610551_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR04369.1|610577_612797_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR04372.1|612783_613308_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04375.1|613357_613987_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR04378.1|613983_614667_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04380.1|614678_616229_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR04383.1|616225_616609_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR04385.1|616631_616898_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04388.1|616897_617506_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04392.1|617520_618720_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR04394.1|618729_619059_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04396.1|619058_619241_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04399.1|619324_619534_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR04402.1|619633_620035_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04405.1|620031_620184_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04407.1|620192_620387_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04410.1|620379_620796_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR04413.1|620931_621306_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04416.1|621404_621911_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	5.5e-13
SPR04419.1|621897_622272_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04422.1|622427_622766_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.6e-05
635086:635134	attR	TACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGT	NA	NA	NA	NA
>prophage 6
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	633633	737930	2465012	transposase,integrase,tRNA,protease	Indivirus(36.0%)	118	635086:635145	739240:739279
SPR04438.1|633633_633915_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04440.1|633993_634128_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04444.1|634141_634648_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	5.0e-14
SPR04447.1|634634_635009_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
635086:635145	attL	TACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGG	NA	NA	NA	NA
SPR04450.1|635134_635365_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
635086:635145	attL	TACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGG	NA	NA	NA	NA
SPR04453.1|635539_635878_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	6.2e-05
SPR04456.1|635967_636225_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR04458.1|636779_638648_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04461.1|638916_639024_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04464.1|639198_640212_-	threonine dehydratase	NA	NA	NA	NA	NA
SPR04467.1|640328_642701_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.2	4.6e-171
SPR04470.1|642765_643416_-	Chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
SPR04472.1|643545_644292_-	amidophosphoribosyltransferase	NA	NA	NA	NA	NA
SPR04474.1|644275_645313_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
SPR04476.1|645382_646000_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	43.0	1.3e-24
SPR04479.1|646565_646817_+	Uncharacterised protein	NA	B0VK10	Azospirillum_phage	45.9	1.5e-11
SPR04480.1|647444_647735_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR04482.1|648219_648396_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04483.1|648403_648778_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04490.1|648764_649271_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.7	7.2e-13
SPR04492.1|649324_649840_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR04495.1|649927_650530_-	ankyrin repeat-containing protein	NA	A0A1V0QG02	Shearwaterpox_virus	31.5	8.5e-05
SPR04499.1|650789_651143_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04502.1|651514_651688_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04505.1|652068_652194_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
SPR04509.1|653099_653330_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04513.1|653526_653853_-	thiol reductase thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.6	1.5e-16
SPR04516.1|653875_656194_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
SPR04520.1|656206_657268_-|protease	zinc metalloprotease	protease	NA	NA	NA	NA
SPR04523.1|657377_658727_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
SPR04527.1|658787_659609_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
SPR04531.1|659727_660603_-	Chaperone SurA	NA	NA	NA	NA	NA
SPR04535.1|660787_661096_-	DNA-binding protein	NA	A7KV42	Bacillus_phage	37.1	2.0e-10
SPR04538.1|661631_662528_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR04542.1|662524_663733_-	poly(A) polymerase	NA	A0A2L0UZ92	Agrobacterium_phage	41.6	1.0e-33
SPR04546.1|663788_664985_-	sodium:proton antiporter	NA	NA	NA	NA	NA
SPR04550.1|665165_668633_-	ATP-dependent DNA helicase UvrD	NA	NA	NA	NA	NA
SPR04554.1|668645_669119_-	phosphohistidine phosphatase	NA	NA	NA	NA	NA
SPR04556.1|669201_670053_-	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
SPR04559.1|670059_670863_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPR04563.1|671288_671816_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
SPR04567.1|672068_672575_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR04570.1|672561_672936_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04574.1|673639_673846_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
SPR04578.1|673942_674308_+	membrane protein	NA	NA	NA	NA	NA
SPR04581.1|674345_674468_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04584.1|674685_675606_-	GTPase Era	NA	NA	NA	NA	NA
SPR04589.1|675602_676625_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04593.1|676830_677910_-	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	34.4	4.0e-05
SPR04597.1|678285_678696_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04601.1|678904_680470_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04603.1|680478_680610_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR04606.1|680560_681916_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.6	1.6e-67
SPR04610.1|682151_682727_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	4.8e-05
SPR04613.1|682895_683075_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04616.1|683078_683453_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04620.1|683439_683838_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	6.4e-09
SPR04624.1|683960_684407_-	Uncharacterised protein	NA	NA	NA	NA	NA
683559:683967	attR	TACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGGGCTTTGTAATAATCAAATTATAGCACCAGTAATATTTGAAGGAAATTGTAATAAAGCAATATTTATAACTTATGTAGAAACTATATTAATCAAAGAATTGCGCCCTAGACAAATAGTAATTATGGATAATATCAACTTTCATAAGAATACTATAATTAAAGTATTAATAGAATCGGTTGGCTGCAGTATTCTATTCTTACCTACATATAAAATCATATAGAACATTATTGGTTTAAGATTAAGAACGAAATAAGAAAAGTTACTCCTCAATTCAAAGATATTAGCATTGCTGTAGAACACGTAATGAAGTTTATCTGATTGTACCTATTTCCTATGTTATTGCTATACT	NA	NA	NA	NA
SPR04628.1|684399_684918_-	Uncharacterised protein	NA	NA	NA	NA	NA
683559:683967	attR	TACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGGGCTTTGTAATAATCAAATTATAGCACCAGTAATATTTGAAGGAAATTGTAATAAAGCAATATTTATAACTTATGTAGAAACTATATTAATCAAAGAATTGCGCCCTAGACAAATAGTAATTATGGATAATATCAACTTTCATAAGAATACTATAATTAAAGTATTAATAGAATCGGTTGGCTGCAGTATTCTATTCTTACCTACATATAAAATCATATAGAACATTATTGGTTTAAGATTAAGAACGAAATAAGAAAAGTTACTCCTCAATTCAAAGATATTAGCATTGCTGTAGAACACGTAATGAAGTTTATCTGATTGTACCTATTTCCTATGTTATTGCTATACT	NA	NA	NA	NA
SPR04631.1|684950_685982_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR04635.1|686474_686981_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	5.5e-13
SPR04638.1|686967_687342_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04641.1|687461_687800_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.1	2.1e-05
SPR04645.1|687913_688489_-	(p)pGpp hydrolase	NA	A0A292GI44	Xanthomonas_phage	35.4	1.9e-06
SPR04649.1|688589_689447_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04653.1|689451_689868_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04656.1|690062_690197_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04662.1|690547_691357_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	25.6	2.0e-17
SPR04665.1|691360_691642_-	membrane protein	NA	NA	NA	NA	NA
SPR04669.1|691844_691997_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04673.1|692181_693201_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR04677.1|693218_693347_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04680.1|693922_694591_+	glutathione S-transferase	NA	NA	NA	NA	NA
SPR04684.1|694728_695103_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04688.1|695092_695383_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04691.1|695395_695554_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04695.1|695969_696476_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
SPR04700.1|696640_696838_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04703.1|697062_697539_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
SPR04707.1|697562_698834_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR04709.1|698836_699280_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
SPR04712.1|699326_699689_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA	NA
SPR04716.1|699660_700167_-	ribonuclease H	NA	A0A1P8DJF0	Virus_Rctr71	47.7	2.4e-29
SPR04720.1|700166_700694_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04724.1|700821_701646_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
SPR04728.1|701777_702098_-	ferredoxin	NA	NA	NA	NA	NA
SPR04730.1|702102_702813_-	heme exporter protein C	NA	NA	NA	NA	NA
SPR04734.1|702805_703369_-	Laccase domain protein YfiH	NA	NA	NA	NA	NA
SPR04736.1|703514_704366_+	glutamine synthetase	NA	NA	NA	NA	NA
SPR04737.1|704996_705578_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04741.1|705808_706183_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04745.1|706337_706676_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.2	2.1e-05
SPR04749.1|707718_711372_-	Secreted effector protein PipB2	NA	NA	NA	NA	NA
SPR04753.1|711878_714152_-	ScaE autotransporter protein	NA	NA	NA	NA	NA
SPR04758.1|714711_714954_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04761.1|715356_715794_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR04765.1|716356_716905_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SPR04768.1|717473_718445_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR04773.1|718454_719135_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR04777.1|719148_719655_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR04781.1|719762_721253_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR04785.1|722009_722171_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04789.1|722139_724434_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04793.1|724569_724998_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04797.1|725275_725731_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04800.1|725781_726147_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04803.1|726105_726834_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.7	2.1e-82
SPR04807.1|726954_727530_-	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	5.7e-06
SPR04811.1|727630_728488_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04814.1|728509_729238_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04817.1|730010_731819_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04820.1|732079_732367_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04823.1|732557_733088_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04827.1|733079_733481_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04830.1|733558_734071_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04834.1|734547_735189_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR04838.1|735866_736163_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04842.1|736730_737930_+|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.7	4.6e-26
739240:739279	attR	AAAAATAAAACTGGCTTAAAATGCTAGTTTTTACTTCAAA	NA	NA	NA	NA
>prophage 7
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	755451	800701	2465012	transposase	Wolbachia_phage(25.0%)	42	NA	NA
SPR04902.1|755451_756444_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04905.1|756428_759098_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR04909.1|759364_762241_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR04913.1|762519_762975_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04916.1|763058_763202_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04919.1|763298_764372_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR04923.1|764651_764864_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR04927.1|764982_765957_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.0e-84
SPR04930.1|766077_766665_-	hydrolase	NA	NA	NA	NA	NA
SPR04934.1|766706_767201_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04937.1|767219_768155_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04941.1|768171_768972_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04945.1|769101_769803_-	histidine kinase	NA	NA	NA	NA	NA
SPR04949.1|769867_770146_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR04953.1|770520_771330_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	3.7e-19
SPR04956.1|771345_772221_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR04960.1|772569_779136_-	Uncharacterised protein	NA	Q9JMP0	Wolbachia_phage	34.7	2.6e-38
SPR04964.1|779113_779674_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04968.1|780492_780996_-	membrane protein	NA	NA	NA	NA	NA
SPR04972.1|781042_781687_-	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	9.8e-07
SPR04976.1|781721_782297_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR04980.1|782529_783966_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.6	2.1e-73
SPR04984.1|783974_785690_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04988.1|786187_786313_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR04992.1|787244_787619_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04995.1|787605_787713_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR04998.1|787773_787899_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05002.1|787904_788111_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05006.1|788124_788400_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05008.1|788990_789410_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	37.4	1.4e-17
SPR05012.1|789817_790273_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05016.1|790612_790888_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05020.1|790917_791460_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR05024.1|791537_793016_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05026.1|793025_793997_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05029.1|794048_796190_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05032.1|796269_797049_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05036.1|797184_797310_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05038.1|797287_797587_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05041.1|797864_798308_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05043.1|798643_799234_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR05045.1|799822_800701_-|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	58.1	7.1e-85
>prophage 8
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	805626	1019486	2465012	transposase,integrase,tRNA,protease	Indivirus(32.61%)	234	833035:833094	1026930:1027346
SPR05070.1|805626_805875_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	68.4	1.2e-24
SPR05073.1|805888_806404_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	3.0e-14
SPR05075.1|806381_806702_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05077.1|806652_806757_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05080.1|806846_807554_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.5	1.1e-48
SPR05083.1|807621_807897_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR05085.1|809224_809959_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05088.1|810415_811471_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR05091.1|811806_812250_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05093.1|812528_815384_+	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	24.3	8.2e-05
SPR05096.1|815649_818319_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05099.1|818370_819354_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05102.1|819363_821118_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05104.1|821121_822264_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR05107.1|822279_824520_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR05110.1|824506_824893_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR05112.1|825081_825711_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR05115.1|825707_826391_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05117.1|826402_826780_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR05120.1|826776_827160_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR05123.1|827182_828055_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05124.1|828069_829269_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR05127.1|829278_829608_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05129.1|829607_829790_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05132.1|829819_830929_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05135.1|830971_831298_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05137.1|831441_831933_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05140.1|831929_832082_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05142.1|832062_832482_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR05144.1|832481_832805_-	Uncharacterised protein	NA	NA	NA	NA	NA
833035:833094	attL	GTATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAAA	NA	NA	NA	NA
SPR05147.1|833107_833482_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
833035:833094	attL	GTATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAAA	NA	NA	NA	NA
SPR05150.1|833468_833975_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	2.5e-13
833035:833094	attL	GTATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAAA	NA	NA	NA	NA
SPR05153.1|833999_834260_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05156.1|834317_834653_-|integrase	integrase	integrase	G8C7S0	Escherichia_phage	29.4	9.6e-06
SPR05159.1|834816_835323_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	2.5e-13
SPR05162.1|835309_835684_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05165.1|836022_836529_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	2.5e-13
SPR05169.1|836477_836831_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05173.1|837575_838775_+	MFS transporter	NA	S4TR35	Salmonella_phage	20.4	3.7e-07
SPR05178.1|839163_841299_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05182.1|841542_842160_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
SPR05184.1|842159_843146_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.3	6.3e-05
SPR05188.1|843316_844141_+	cytochrome c oxidase subunit III	NA	NA	NA	NA	NA
SPR05191.1|844531_844870_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05196.1|844936_846238_-	MFS transporter	NA	NA	NA	NA	NA
SPR05200.1|846526_848005_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05203.1|848010_849294_-	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
SPR05207.1|849293_852185_-	2-oxoglutarate dehydrogenase subunit E1	NA	NA	NA	NA	NA
SPR05211.1|852225_852867_-	superoxide dismutase	NA	NA	NA	NA	NA
SPR05214.1|852951_853137_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05217.1|854082_855351_+	magnesium transporter	NA	NA	NA	NA	NA
SPR05221.1|855340_857203_+	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
SPR05225.1|857975_858320_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05229.1|858464_858797_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05233.1|859019_859124_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05249.1|859074_859395_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05253.1|859381_859888_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	2.5e-13
SPR05255.1|861357_861696_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.1	2.1e-05
861252:861380	attR	TTTTTTATACTCTTTTCATATTGGCATATTATGTACCTATTTCCTACGTTCGTGCTATACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGGGCTTTGTAATAA	NA	NA	NA	NA
SPR05258.1|861822_862329_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	3.8e-14
861252:861380	attR	TTTTTTATACTCTTTTCATATTGGCATATTATGTACCTATTTCCTACGTTCGTGCTATACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGGGCTTTGTAATAA	NA	NA	NA	NA
SPR05262.1|862342_862501_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
861252:861380	attR	TTTTTTATACTCTTTTCATATTGGCATATTATGTACCTATTTCCTACGTTCGTGCTATACTAGATGTTATGGCAATAAAGCTTATCAACATAAATCCAGGGTCAGTATGATAGCAGGGCTTTGTAATAA	NA	NA	NA	NA
SPR05266.1|862512_862629_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05268.1|862628_862739_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05272.1|863150_864902_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.8	9.7e-41
SPR05276.1|864894_865227_-	iron donor protein CyaY	NA	NA	NA	NA	NA
SPR05280.1|865504_865654_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05284.1|866139_870255_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05287.1|870464_871313_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05290.1|871288_871990_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05294.1|873078_873396_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
SPR05299.1|873426_873816_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
SPR05302.1|874010_875798_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
SPR05307.1|875832_876618_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR05311.1|877059_877437_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05316.1|877467_877755_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
SPR05319.1|877993_878368_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05324.1|878354_878861_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	5.0e-14
SPR05328.1|879270_879507_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05332.1|879518_879956_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05336.1|880485_881226_+	S26 family signal peptidase	NA	NA	NA	NA	NA
SPR05340.1|881266_882022_+	ribonuclease III	NA	M1HK80	Acanthocystis_turfacea_Chlorella_virus	30.5	1.8e-20
SPR05344.1|882211_882445_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05348.1|882456_882636_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05352.1|882679_882898_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05356.1|883066_883294_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR05361.1|883518_884094_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	37.8	5.7e-06
SPR05363.1|884180_884747_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05366.1|884844_885300_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05370.1|885578_885881_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05373.1|885935_886277_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05376.1|886344_886719_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05379.1|886705_886840_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05382.1|886896_887271_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05385.1|887257_887764_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	2.5e-13
SPR05388.1|887788_887887_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05391.1|887890_888076_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05394.1|889671_894195_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05398.1|894194_896648_-	virB4 protein precursor	NA	NA	NA	NA	NA
SPR05402.1|896922_897939_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SPR05406.1|898019_899240_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
SPR05414.1|899253_899547_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05418.1|899560_900862_+|tRNA	proline--tRNA ligase	tRNA	A0A1V0SKZ9	Klosneuvirus	21.0	6.8e-07
SPR05421.1|901091_902345_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.6	1.2e-120
SPR05424.1|902550_903120_+	elongation factor P	NA	NA	NA	NA	NA
SPR05428.1|903116_903902_+	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
SPR05432.1|904023_904725_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
SPR05436.1|905600_906038_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05440.1|906111_906486_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05444.1|906472_906607_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05447.1|906663_907038_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05449.1|907024_907531_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	8.5e-14
SPR05453.1|907555_907678_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05457.1|908338_909601_+	MFS transporter permease	NA	NA	NA	NA	NA
SPR05461.1|909616_911020_+	sodium:pantothenate symporter	NA	NA	NA	NA	NA
SPR05465.1|912018_912144_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05468.1|912665_912974_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05472.1|913162_913423_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR05475.1|913508_913883_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05479.1|913869_914376_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.5e-14
SPR05483.1|914644_914941_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05487.1|915027_915672_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05491.1|916053_916740_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05494.1|916785_917025_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05497.1|917112_917301_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05501.1|917610_917913_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR05505.1|918270_918627_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05510.1|918743_918875_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05513.1|919144_920989_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.2	2.2e-35
SPR05517.1|920972_922748_-	DNA primase	NA	S5M810	Pseudoalteromonas_phage	45.3	2.7e-14
SPR05521.1|923659_924820_-	DNA-processing protein DprA	NA	S6BFL3	Thermus_phage	34.3	5.5e-24
SPR05525.1|924860_925463_-	peroxidase	NA	NA	NA	NA	NA
SPR05529.1|926665_927055_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05532.1|927493_927868_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05534.1|927854_928361_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.7	1.0e-14
SPR05538.1|928519_928642_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05542.1|928864_929002_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05546.1|928988_930311_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.9	2.1e-64
SPR05549.1|930319_932035_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05552.1|933215_933740_+	Uncharacterised protein	NA	K4ICR8	Acidithiobacillus_phage	26.8	5.5e-08
SPR05555.1|934211_934370_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
SPR05558.1|934887_935877_-	GTPase ObgE	NA	NA	NA	NA	NA
SPR05562.1|935896_936274_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05566.1|936296_936626_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05568.1|936803_937544_-	membrane protein	NA	NA	NA	NA	NA
SPR05571.1|937893_938283_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
SPR05574.1|938301_940437_+	(p)ppGpp synthetase	NA	U5J9N6	Bacillus_phage	31.0	1.2e-08
SPR05579.1|940447_940846_+	holo-ACP synthase	NA	NA	NA	NA	NA
SPR05584.1|942011_943679_-	molecular chaperone GroEL	NA	A0A219YK78	uncultured_virus	53.3	1.2e-141
SPR05589.1|943751_944036_-	chaperonin	NA	A0A221S4G8	uncultured_virus	46.2	4.0e-13
SPR05592.1|944972_946142_+	ankyrin repeat-containing protein 09	NA	Q6VZB8	Canarypox_virus	27.6	1.4e-06
SPR05596.1|946381_946792_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05599.1|946854_947292_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05604.1|947303_947678_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05608.1|947741_948116_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05612.1|948453_949908_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	34.4	9.8e-63
SPR05616.1|950358_950526_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05621.1|950649_952212_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	34.4	4.6e-26
SPR05625.1|952495_952846_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
SPR05628.1|953442_953625_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR05633.1|954423_954549_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05636.1|954941_955238_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05641.1|955912_956536_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05645.1|956578_957694_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05648.1|957723_957906_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05650.1|957905_958235_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05654.1|958244_959444_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR05658.1|959473_960331_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05662.1|960353_960737_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR05666.1|960733_960994_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR05668.1|961023_962421_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR05672.1|962673_963468_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR05676.1|963578_964145_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.8	2.0e-24
SPR05680.1|964119_964866_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05683.1|964862_965492_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR05686.1|965541_966066_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR05690.1|966052_967618_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR05693.1|967695_969174_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR05697.1|969183_969864_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05700.1|969937_970468_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05703.1|970446_970800_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05706.1|970828_971071_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05710.1|971450_972413_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR05714.1|973094_974147_-	ankyrin repeat-containing protein 19	NA	NA	NA	NA	NA
SPR05718.1|974638_974995_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR05721.1|975181_975688_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	2.2e-14
SPR05724.1|975674_976049_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05728.1|976220_976718_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05732.1|976731_978837_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR05736.1|979591_982270_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR05740.1|982719_983175_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR05744.1|983263_983839_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05748.1|984102_984636_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05751.1|984926_985913_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR05754.1|986033_986621_-	hydrolase	NA	A0A2I2L310	Orpheovirus	29.0	3.4e-06
SPR05758.1|986662_987157_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05762.1|987175_988114_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05766.1|988130_988316_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05768.1|988312_988708_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05772.1|988837_989539_-	histidine kinase	NA	NA	NA	NA	NA
SPR05776.1|989603_989882_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR05780.1|990249_991059_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR05784.1|991062_991566_-	membrane protein	NA	NA	NA	NA	NA
SPR05786.1|991668_992313_-	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	2.4e-05
SPR05790.1|992350_992926_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	4.8e-05
SPR05794.1|993161_994610_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.6	1.7e-70
SPR05798.1|994618_995629_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05802.1|995679_996333_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05804.1|996825_996951_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05808.1|997166_997292_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05813.1|997500_997623_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05817.1|998685_1003611_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
SPR05820.1|1003692_1005036_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
SPR05824.1|1005061_1006000_+	recombinase XerC	NA	A0A0K0N6I5	Gordonia_phage	34.9	2.5e-11
SPR05828.1|1006033_1006465_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
SPR05832.1|1006549_1007077_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	49.7	1.6e-39
SPR05835.1|1007100_1007973_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
SPR05838.1|1007956_1008898_+	ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SPR05842.1|1009740_1010094_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR05846.1|1010042_1010381_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR05851.1|1010500_1010875_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05855.1|1010852_1011368_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.5	3.0e-14
SPR05858.1|1012101_1012389_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR05863.1|1013295_1013592_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05867.1|1013720_1014053_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05870.1|1014077_1014236_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR05872.1|1014329_1014479_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05876.1|1014505_1014814_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05880.1|1014865_1015036_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR05884.1|1015014_1015368_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05889.1|1016262_1016727_-	ATP synthase subunit b	NA	NA	NA	NA	NA
SPR05893.1|1016739_1017237_-	ATP synthase subunit B	NA	NA	NA	NA	NA
SPR05898.1|1017244_1017469_-	ATP synthase subunit C	NA	NA	NA	NA	NA
SPR05902.1|1017524_1018253_-	ATP synthase subunit A	NA	NA	NA	NA	NA
SPR05906.1|1019027_1019138_+	ankyrin	NA	NA	NA	NA	NA
SPR05910.1|1019294_1019486_-|transposase	transposase	transposase	NA	NA	NA	NA
1026930:1027346	attR	TGCTGTAGAACACGTAATGAAGTTTATTTGATTGTACCTATTTCCTACGTTATTGCTATATATAAAAAAATCTATTAGATCTAGATCTAAGCTTGATAGTAACTTGCTTAGATATCAGAATCTATCAAGCTTAGAAGCAATTAAATTTTCTGTGTAAAATATCGTGTTCTGTGTATGTTCAGTATTTGAATTACGTTTCTAGAGTAAAATTTGCTCTAAAACTCCTGCTATATCTGATATTTTGGAGTAAATATTGTGCAGTGTATGAGACGAATTTTTTCAACTAATGTTTGCAAAAGTATTACTAATAATAGTGTTAATAATACAATAATTTTTTATAAATTTGTTGGAAATTTTCCACCAGAAGAATGGAAATGGTTAACAGATGCTGATGGAAAAGCTTTAGGAAAAACTGAA	NA	NA	NA	NA
>prophage 9
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1026092	1130663	2465012	transposase,integrase,tRNA	Indivirus(17.39%)	117	1059602:1059627	1126332:1126348
SPR05929.1|1026092_1026467_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR05934.1|1026621_1026960_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR05939.1|1027184_1028894_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05943.1|1028902_1030351_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.0	4.4e-71
SPR05947.1|1030594_1031170_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR05952.1|1031207_1031852_+	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	2.4e-05
SPR05957.1|1031898_1032402_+	membrane protein	NA	NA	NA	NA	NA
SPR05961.1|1032443_1033256_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	30.9	2.4e-26
SPR05965.1|1033804_1034521_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05970.1|1034652_1034808_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR05975.1|1034869_1035598_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05980.1|1035619_1036477_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR05984.1|1036577_1036892_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR05987.1|1038019_1041493_-	acyl-[ACP]--phospholipid O-acyltransferase	NA	NA	NA	NA	NA
SPR05991.1|1041810_1042443_-	esterase	NA	NA	NA	NA	NA
SPR05996.1|1042439_1043078_-	endonuclease III	NA	NA	NA	NA	NA
SPR06001.1|1043153_1043507_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
SPR06006.1|1043562_1044111_+	iron transporter	NA	NA	NA	NA	NA
SPR06011.1|1044476_1044680_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06015.1|1044950_1045076_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06018.1|1045056_1045347_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06023.1|1045336_1045711_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06027.1|1045736_1045946_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06032.1|1046337_1047144_-	transcriptional regulator	NA	NA	NA	NA	NA
SPR06036.1|1047414_1048332_+	cation-efflux pump	NA	NA	NA	NA	NA
SPR06040.1|1048372_1048834_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
SPR06044.1|1048902_1051002_+	DNA ligase (NAD(+)) LigA	NA	A0A1W6DX16	Sphingobium_phage	36.4	2.6e-101
SPR06048.1|1050998_1052771_+	aminopeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	35.5	2.4e-95
SPR06053.1|1053159_1053465_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06058.1|1053442_1053550_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06062.1|1053772_1054258_-	DNA methyltransferase	NA	NA	NA	NA	NA
SPR06067.1|1054301_1054676_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06072.1|1054662_1055169_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	5.0e-14
SPR06075.1|1056252_1057080_+	ankyrin repeat-containing protein 13	NA	NA	NA	NA	NA
SPR06080.1|1057453_1057672_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR06084.1|1058098_1058458_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06088.1|1058874_1059309_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06092.1|1059354_1059759_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
1059602:1059627	attL	ATAGTTCAAAAATCTTTAACAATTCT	NA	NA	NA	NA
SPR06096.1|1059700_1060285_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
1059602:1059627	attL	ATAGTTCAAAAATCTTTAACAATTCT	NA	NA	NA	NA
SPR06099.1|1060909_1061389_+	transcription elongation factor GreA	NA	A0A248SJQ8	Salicola_phage	27.7	1.2e-06
SPR06104.1|1061435_1062335_+	RNA polymerase factor sigma-32	NA	A0A248SJA5	Salicola_phage	29.8	5.1e-30
SPR06107.1|1062584_1062701_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06112.1|1062715_1062919_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06117.1|1063050_1063452_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.6	4.6e-07
SPR06122.1|1063543_1063918_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06126.1|1064258_1064555_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06131.1|1064855_1065398_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06136.1|1065680_1065851_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06141.1|1067323_1067452_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06146.1|1067463_1067901_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06150.1|1068335_1069808_-	ankyrin repeat-containing protein 13	NA	A0A1V0S7Q4	Shearwaterpox_virus	30.6	3.3e-10
SPR06157.1|1070021_1070654_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06162.1|1070625_1070775_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06167.1|1070924_1071740_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06173.1|1071790_1072063_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06174.1|1072078_1072333_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06179.1|1072504_1075009_-	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	24.7	1.1e-05
SPR06184.1|1075206_1075398_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06189.1|1075471_1075705_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06194.1|1075658_1075790_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06197.1|1075810_1076014_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06201.1|1076110_1076404_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1076115:1076140	attR	AGAATTGTTAAAGATTTTTGAACTAT	NA	NA	NA	NA
SPR06204.1|1076965_1077229_+	Uncharacterised protein	NA	NA	NA	NA	NA
1076115:1076140	attR	AGAATTGTTAAAGATTTTTGAACTAT	NA	NA	NA	NA
SPR06207.1|1077299_1078544_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.2	1.1e-17
SPR06211.1|1078679_1079003_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06215.1|1079002_1079554_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06219.1|1079550_1080027_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06223.1|1080143_1080236_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06226.1|1080528_1080864_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06229.1|1080902_1082225_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06233.1|1082224_1082554_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06237.1|1082534_1085024_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR06241.1|1085020_1085680_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR06245.1|1085763_1085937_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06249.1|1085970_1086915_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06253.1|1086937_1087321_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR06255.1|1087317_1089009_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR06259.1|1089020_1089704_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06262.1|1089700_1091002_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR06264.1|1091001_1093641_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR06269.1|1093656_1094802_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR06273.1|1094805_1096560_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06277.1|1096569_1097658_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06281.1|1097642_1100312_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06287.1|1100576_1103060_-	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	23.5	3.2e-05
SPR06290.1|1103114_1103417_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06294.1|1103695_1104151_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06297.1|1104473_1106288_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR06301.1|1106632_1107679_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.9e-84
SPR06306.1|1107799_1108387_-	hydrolase	NA	A0A2I2L310	Orpheovirus	29.0	3.4e-06
SPR06309.1|1108428_1108923_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06314.1|1108941_1109877_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06318.1|1109893_1110694_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06323.1|1110769_1110886_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06328.1|1110908_1111577_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06333.1|1111591_1112293_-	histidine kinase	NA	NA	NA	NA	NA
SPR06338.1|1112357_1113167_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR06342.1|1113540_1114350_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR06346.1|1114353_1114857_-	membrane protein	NA	NA	NA	NA	NA
SPR06352.1|1114903_1115548_-	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	31.7	4.8e-14
SPR06356.1|1115585_1116161_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.5	1.3e-05
SPR06359.1|1116395_1117832_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	3.5e-73
SPR06364.1|1117840_1119406_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06369.1|1119514_1119706_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR06373.1|1120142_1120343_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06380.1|1120442_1120595_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06385.1|1120803_1121310_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	6.5e-14
SPR06390.1|1121334_1121430_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06394.1|1122234_1122402_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
SPR06399.1|1122531_1122753_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06403.1|1123028_1123253_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SPR06408.1|1123269_1123551_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
SPR06413.1|1123794_1124667_+	EamA family transporter	NA	NA	NA	NA	NA
SPR06416.1|1124684_1125941_+	MFS transporter	NA	NA	NA	NA	NA
SPR06422.1|1126535_1127273_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06424.1|1127632_1128844_-	penicillin-binding protein 4	NA	G3M511	Mycobacterium_phage	26.9	6.1e-10
SPR06429.1|1128869_1130663_-|tRNA	aspartate--tRNA(Asp/Asn) ligase	tRNA	NA	NA	NA	NA
>prophage 10
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1155690	1194337	2465012	transposase	Indivirus(57.14%)	41	NA	NA
SPR06528.1|1155690_1156059_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06533.1|1156092_1156410_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06537.1|1156396_1156903_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.7	2.9e-14
SPR06541.1|1157068_1159357_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	43.0	3.9e-74
SPR06546.1|1159447_1159819_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06550.1|1159851_1161519_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.0	7.3e-46
SPR06555.1|1161652_1162486_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06559.1|1163243_1164785_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06563.1|1165133_1165847_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06568.1|1166013_1166352_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06573.1|1166373_1166712_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.6e-05
SPR06577.1|1166866_1167241_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06581.1|1167308_1168715_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06584.1|1168850_1168976_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06592.1|1168953_1169253_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06594.1|1169590_1169986_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06600.1|1170027_1170813_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
SPR06605.1|1171531_1173400_-	repeat-containing protein D	NA	NA	NA	NA	NA
SPR06610.1|1174108_1174261_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06614.1|1174445_1174580_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR06618.1|1174921_1175398_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06622.1|1175448_1176459_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06627.1|1176467_1177202_+	replicative DNA helicase	NA	G9BWB0	Planktothrix_phage	31.7	3.2e-22
SPR06631.1|1177226_1177733_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.7	2.9e-14
SPR06637.1|1177719_1178094_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06641.1|1178249_1178588_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.6e-05
SPR06645.1|1179078_1182516_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR06649.1|1182925_1183045_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR06653.1|1183287_1183692_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06657.1|1183997_1184300_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06661.1|1184350_1184512_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06664.1|1184516_1185146_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06666.1|1185708_1185990_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR06670.1|1186311_1186767_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06675.1|1187042_1187471_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06683.1|1187483_1189760_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06687.1|1189728_1189890_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06692.1|1190644_1192135_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06696.1|1192242_1192749_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06699.1|1192762_1193314_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06703.1|1193365_1194337_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1199207	1241479	2465012	transposase,integrase,tRNA	Indivirus(37.5%)	42	1202063:1202082	1237346:1237365
SPR06749.1|1199207_1199417_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06753.1|1199717_1200101_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06758.1|1201238_1201676_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06762.1|1201687_1202062_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1202063:1202082	attL	CCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR06767.1|1203032_1203374_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06771.1|1203513_1204350_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
SPR06775.1|1204513_1205863_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
SPR06780.1|1206153_1207071_+	peptidase S49	NA	Q9JMP1	Wolbachia_phage	27.8	5.3e-14
SPR06785.1|1207196_1207613_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR06790.1|1208361_1208700_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR06795.1|1208854_1209229_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06801.1|1209869_1210103_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06805.1|1210236_1210422_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06810.1|1210736_1210916_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR06815.1|1211235_1211355_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR06820.1|1211836_1213078_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	35.5	1.5e-67
SPR06825.1|1214036_1215602_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06830.1|1215610_1217059_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.4	2.8e-70
SPR06833.1|1217292_1217481_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR06838.1|1217643_1217868_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR06843.1|1217988_1219035_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.5e-84
SPR06847.1|1219379_1221194_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR06851.1|1221529_1221973_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR06855.1|1222250_1222550_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06860.1|1222527_1222653_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR06864.1|1222788_1225215_+	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	23.5	4.1e-05
SPR06869.1|1225479_1228149_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR06873.1|1228200_1229124_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR06876.1|1229133_1230612_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06880.1|1230689_1231232_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR06884.1|1231312_1231651_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR06888.1|1231805_1232180_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06892.1|1232247_1232412_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR06896.1|1232620_1233892_+|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
SPR06904.1|1233954_1234947_+	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA	NA
SPR06907.1|1235188_1235740_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR06911.1|1236898_1237345_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR06917.1|1237451_1237826_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1237346:1237365	attR	CCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
SPR06921.1|1237980_1238319_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR06924.1|1238399_1238942_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR06928.1|1239019_1240498_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR06932.1|1240507_1241479_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1254417	1300469	2465012	transposase,integrase,capsid	Indivirus(30.0%)	56	1258782:1258813	1289461:1289492
SPR06991.1|1254417_1254933_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	2.3e-14
SPR06996.1|1254910_1255285_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR06998.1|1255729_1256254_+|integrase	integrase	integrase	A0A221SAN4	Ralstonia_phage	39.1	3.6e-07
SPR07003.1|1256339_1256546_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07007.1|1256982_1257117_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR07012.1|1257370_1257487_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07016.1|1257974_1258145_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR07021.1|1258426_1258663_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1258782:1258813	attL	ATAATTTTGAACTACGTTAACCAGTTTCGAAA	NA	NA	NA	NA
SPR07025.1|1259060_1259213_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07029.1|1261085_1261250_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07033.1|1261503_1262178_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07037.1|1262237_1262744_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.0	5.5e-13
SPR07042.1|1262730_1263105_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07046.1|1263924_1264056_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07050.1|1264363_1264513_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07053.1|1266785_1267055_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
SPR07057.1|1267098_1267425_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
SPR07060.1|1267562_1268231_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
SPR07064.1|1268335_1269085_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
SPR07067.1|1269305_1270676_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	33.5	5.2e-42
SPR07072.1|1270734_1272210_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07078.1|1272301_1274539_-	ScaD autotransporter protein	NA	NA	NA	NA	NA
SPR07082.1|1275595_1277275_+	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	39.1	8.4e-42
SPR07087.1|1277286_1277847_+	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SPR07092.1|1278110_1278824_+	zinc ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	2.0e-16
SPR07097.1|1278804_1279593_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
SPR07102.1|1281186_1281990_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07105.1|1282117_1282423_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07109.1|1282479_1282671_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07113.1|1282747_1283077_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07118.1|1283076_1284402_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07123.1|1284444_1284771_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07128.1|1284915_1285407_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07132.1|1285403_1285556_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07137.1|1285536_1285956_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR07142.1|1285955_1286279_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07146.1|1286416_1287391_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	25.6	7.8e-16
SPR07149.1|1287790_1287991_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07154.1|1288486_1288906_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR07159.1|1289050_1289377_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07164.1|1289600_1290074_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	48.3	7.9e-30
1289461:1289492	attR	TTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
SPR07167.1|1290167_1290503_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	68.5	4.7e-37
SPR07170.1|1290624_1290828_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR07175.1|1290893_1291172_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07180.1|1291341_1291716_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07184.1|1292017_1292386_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07189.1|1292547_1292886_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07194.1|1293082_1294687_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07199.1|1295477_1295861_-	glutaredoxin	NA	NA	NA	NA	NA
SPR07202.1|1296068_1296497_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07206.1|1296595_1297399_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07211.1|1297411_1298014_-	TIGR02217 family protein	NA	NA	NA	NA	NA
SPR07216.1|1298006_1298432_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07221.1|1298431_1298773_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07225.1|1298774_1299320_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07230.1|1299353_1300469_-|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	40.3	1.1e-53
>prophage 13
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1308501	1350196	2465012	transposase,integrase,tRNA	Indivirus(80.0%)	57	1337321:1337349	1357249:1357277
SPR07257.1|1308501_1308654_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR07262.1|1308936_1309782_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07265.1|1310221_1310596_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07270.1|1310607_1310877_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07275.1|1312392_1312611_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07280.1|1312827_1313199_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
SPR07284.1|1313211_1313727_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
SPR07289.1|1313737_1314325_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
SPR07293.1|1314350_1315541_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
SPR07297.1|1315537_1316092_+	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA	NA
SPR07301.1|1316109_1317378_+	NADH-quinone oxidoreductase subunit F	NA	NA	NA	NA	NA
SPR07302.1|1317670_1318384_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07306.1|1319515_1321015_+	ADP/ATP carrier protein	NA	NA	NA	NA	NA
SPR07311.1|1321261_1321612_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07313.1|1321674_1322034_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07319.1|1322090_1322441_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07324.1|1322624_1323104_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	25.2	2.5e-07
SPR07328.1|1323160_1324129_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
SPR07332.1|1324157_1324496_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07337.1|1324636_1325377_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
SPR07342.1|1325363_1326230_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
SPR07347.1|1326231_1327083_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
SPR07349.1|1327224_1327707_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
SPR07354.1|1327710_1328202_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
SPR07360.1|1328540_1329287_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07364.1|1331451_1331580_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07368.1|1332626_1332755_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07372.1|1332889_1333156_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07377.1|1333368_1333875_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR07380.1|1333861_1334236_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07384.1|1334567_1335425_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07389.1|1335463_1335769_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07394.1|1335780_1335897_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07399.1|1335927_1336188_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07404.1|1336596_1337187_-	Propionyl-CoA carboxylase beta chain	NA	NA	NA	NA	NA
1337321:1337349	attL	TATAGCAATAACATAGGAAATAGGTACAA	NA	NA	NA	NA
SPR07407.1|1337349_1337856_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	1.3e-14
SPR07412.1|1337842_1338217_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07415.1|1338313_1338664_-	Propionyl-CoA carboxylase beta chain	NA	NA	NA	NA	NA
SPR07420.1|1338911_1340021_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
SPR07424.1|1340253_1341597_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07429.1|1342004_1342157_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07433.1|1342788_1342911_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07438.1|1342978_1343353_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07443.1|1343339_1343729_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.4	2.6e-07
SPR07448.1|1344032_1344173_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07453.1|1344201_1344888_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07458.1|1345269_1345914_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07463.1|1346000_1346297_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07467.1|1346296_1347136_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR07472.1|1347221_1347398_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07476.1|1347431_1348112_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07480.1|1348111_1348378_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07485.1|1348400_1348784_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR07489.1|1348780_1349041_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07493.1|1349070_1349403_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07498.1|1349436_1349811_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07502.1|1349797_1350196_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	26.7	3.8e-09
1357249:1357277	attR	TATAGCAATAACATAGGAAATAGGTACAA	NA	NA	NA	NA
>prophage 14
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1354886	1402149	2465012	transposase,integrase	Indivirus(71.43%)	55	1361416:1361475	1393061:1393164
SPR07531.1|1354886_1355393_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
SPR07536.1|1355379_1355754_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07539.1|1355929_1357075_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07544.1|1357080_1357329_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07548.1|1357277_1357784_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR07551.1|1357770_1358145_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07555.1|1358316_1360926_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
1361416:1361475	attL	TATAGTCATTTACAATGAGGTTTGAGCATAAAAAAAGCGACAATAGCATCATAAGATTTA	NA	NA	NA	NA
SPR07559.1|1361680_1361842_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07564.1|1361810_1364543_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07569.1|1364853_1366176_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07573.1|1366238_1366583_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07576.1|1366730_1367459_-	ankyrin repeat-containing protein 17	NA	NA	NA	NA	NA
SPR07581.1|1367901_1368870_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07586.1|1369078_1369981_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	57.3	8.7e-86
SPR07590.1|1370102_1370510_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR07593.1|1370844_1371045_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07597.1|1371444_1372419_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.6	1.7e-18
SPR07602.1|1372556_1372880_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07607.1|1372879_1373437_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR07612.1|1373426_1373735_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07615.1|1373869_1374196_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07620.1|1374238_1375558_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07625.1|1375557_1375887_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07630.1|1375896_1377105_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR07633.1|1377101_1377761_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR07637.1|1377846_1378044_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07642.1|1378056_1379196_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07645.1|1379199_1380954_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07649.1|1380963_1381956_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07654.1|1383596_1388153_+	ScaA autotransporter protein	NA	NA	NA	NA	NA
SPR07658.1|1389241_1389472_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07662.1|1389667_1389835_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07667.1|1389898_1390117_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07672.1|1390092_1390233_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07676.1|1390555_1390738_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07678.1|1391368_1391494_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07683.1|1391576_1391825_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR07685.1|1391838_1392045_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07690.1|1392150_1392447_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	26.8	3.2e-05
SPR07694.1|1392433_1392808_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07699.1|1393240_1393462_-	conjugative transfer protein	NA	NA	NA	NA	NA
1393061:1393164	attR	TATAGTCATTTACAATGAGGTTTGAGCATAAAAAAAGCGACAATAGCATCATAAGATTTACTAACAGGATATTTTATACGCAAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
SPR07708.1|1393619_1393808_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR07713.1|1394267_1395569_-	malate dehydrogenase	NA	NA	NA	NA	NA
SPR07716.1|1395588_1396515_-	permease	NA	NA	NA	NA	NA
SPR07720.1|1396822_1397422_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07723.1|1397486_1397867_+	citrate synthase	NA	NA	NA	NA	NA
SPR07728.1|1398363_1398870_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR07732.1|1398856_1399177_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07737.1|1399127_1399232_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07742.1|1399406_1399913_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.5e-14
SPR07745.1|1399861_1400029_-	replicative DNA helicase	NA	NA	NA	NA	NA
SPR07749.1|1400042_1400561_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07754.1|1401096_1401222_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07759.1|1401276_1401564_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07762.1|1401771_1402149_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 15
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1407032	1455126	2465012	transposase,integrase	Indivirus(37.5%)	52	1422082:1422111	1453726:1453755
SPR07785.1|1407032_1407308_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07790.1|1407321_1407552_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07796.1|1407673_1407838_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07801.1|1407815_1408190_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07805.1|1409871_1411755_+	RNA-binding protein	NA	NA	NA	NA	NA
SPR07810.1|1411932_1413264_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	2.8e-64
SPR07815.1|1413272_1413806_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07818.1|1413931_1414351_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07823.1|1414989_1416777_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07827.1|1416908_1418099_+	Uncharacterised protein	NA	W8ECU7	Geobacillus_phage	37.4	1.1e-59
SPR07832.1|1418117_1418384_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07837.1|1418872_1419112_-	transcriptional regulator	NA	K4K6E9	Caulobacter_phage	41.4	2.3e-06
SPR07842.1|1419290_1420844_+	ScaC autotransporter protein	NA	NA	NA	NA	NA
SPR07845.1|1421118_1421508_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	26.7	2.2e-06
SPR07849.1|1421501_1421870_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1422082:1422111	attL	TATAGTCATTTACAATGAGGTTTGAGCATA	NA	NA	NA	NA
SPR07854.1|1423804_1424242_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR07858.1|1424309_1424414_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07863.1|1424364_1424685_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07868.1|1424839_1425178_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.2	4.8e-05
SPR07872.1|1425346_1425496_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR07876.1|1425455_1425830_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07881.1|1425841_1426279_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR07885.1|1426291_1426570_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07890.1|1427293_1428163_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR07892.1|1428758_1428914_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07897.1|1429010_1429199_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07902.1|1429174_1429411_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
SPR07907.1|1429528_1429654_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07912.1|1429936_1430140_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR07917.1|1430620_1431700_-	heme A synthase	NA	NA	NA	NA	NA
SPR07922.1|1432993_1433626_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR07926.1|1433878_1435387_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR07931.1|1435496_1436063_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.8	2.0e-24
SPR07936.1|1436037_1436784_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07941.1|1436824_1437685_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07945.1|1437638_1438094_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR07950.1|1438093_1440739_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR07954.1|1440754_1441900_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR07959.1|1441903_1442662_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07963.1|1442672_1443659_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR07968.1|1443668_1444685_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR07973.1|1444669_1446955_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07978.1|1447025_1447532_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.7	3.8e-14
SPR07983.1|1447518_1447893_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR07986.1|1447955_1448312_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR07989.1|1448576_1449332_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07992.1|1449388_1450099_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR07996.1|1450088_1451411_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08001.1|1451688_1452144_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08006.1|1452466_1453540_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08010.1|1453819_1454032_+	conjugative transfer protein	NA	NA	NA	NA	NA
1453726:1453755	attR	TATAGTCATTTACAATGAGGTTTGAGCATA	NA	NA	NA	NA
SPR08016.1|1454139_1455126_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
>prophage 16
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1462501	1503679	2465012	transposase	Indivirus(40.0%)	48	NA	NA
SPR08060.1|1462501_1463017_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	1.7e-14
SPR08065.1|1462994_1463369_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08070.1|1463440_1464739_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	4.2e-65
SPR08074.1|1464747_1466313_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08078.1|1466521_1466926_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08084.1|1466996_1467113_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08088.1|1467124_1467421_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08093.1|1467797_1468142_-	(2Fe-2S) ferredoxin	NA	NA	NA	NA	NA
SPR08097.1|1468158_1470009_-	molecular chaperone HscA	NA	F2Y0P3	Organic_Lake_phycodnavirus	37.2	1.4e-74
SPR08102.1|1469995_1470499_-	co-chaperone HscB	NA	NA	NA	NA	NA
SPR08107.1|1470511_1470886_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7N5	Lake_Baikal_phage	42.9	2.1e-14
SPR08112.1|1470895_1471321_-	iron-sulfur cluster scaffold-like protein	NA	A0A218MKD1	uncultured_virus	73.8	2.4e-46
SPR08117.1|1471361_1472633_-	cysteine desulfurase	NA	NA	NA	NA	NA
SPR08122.1|1472647_1473826_-	aminotransferase class V-fold PLP-dependent enzyme	NA	H7BUW1	unidentified_phage	37.8	6.1e-31
SPR08126.1|1473947_1474361_-	iron-sulfur-binding protein	NA	NA	NA	NA	NA
SPR08130.1|1474598_1475300_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
SPR08135.1|1475593_1476841_+	cell division protein FtsA	NA	NA	NA	NA	NA
SPR08139.1|1476819_1478130_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08144.1|1478114_1479866_+	glycosyl transferase	NA	NA	NA	NA	NA
SPR08149.1|1479908_1480073_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08153.1|1481005_1481167_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08157.1|1482060_1483413_-	Outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
SPR08160.1|1483472_1484150_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08164.1|1484287_1484752_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08167.1|1485064_1485403_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR08171.1|1485557_1485932_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08179.1|1486250_1487603_+	signal recognition particle protein	NA	NA	NA	NA	NA
SPR08184.1|1487659_1488016_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
SPR08188.1|1488198_1488714_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	6.6e-14
SPR08193.1|1488691_1489066_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08196.1|1489169_1489430_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08199.1|1489743_1490613_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08204.1|1490818_1491484_+	guanylate kinase	NA	V9VFN5	Lactococcus_phage	37.7	1.3e-09
SPR08208.1|1491617_1494674_+	cell surface protein	NA	NA	NA	NA	NA
SPR08212.1|1494857_1495232_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08217.1|1495648_1495981_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08222.1|1496049_1496736_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08227.1|1496917_1497859_-	acetylglutamate kinase	NA	NA	NA	NA	NA
SPR08232.1|1497806_1498433_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
SPR08237.1|1498429_1500133_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
SPR08242.1|1501040_1501163_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08247.1|1501230_1501605_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08252.1|1501582_1502098_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	6.6e-14
SPR08257.1|1502266_1502416_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08262.1|1502375_1502750_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08266.1|1502761_1502878_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08270.1|1502956_1503199_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08275.1|1503304_1503679_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 17
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1516972	1547510	2465012	transposase,integrase	Indivirus(71.43%)	48	1517885:1517912	1526602:1526629
SPR08327.1|1516972_1517311_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	2.1e-05
SPR08332.1|1517465_1517840_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1517885:1517912	attL	TGTACCTATTTCCTACGTTCGTGCTATA	NA	NA	NA	NA
SPR08337.1|1518360_1518681_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08342.1|1519177_1519780_+|integrase	integrase	integrase	A0A1S5RGU2	Helicobacter_phage	26.9	4.8e-08
SPR08347.1|1519904_1520207_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08350.1|1520206_1520626_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08355.1|1520606_1520759_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08359.1|1520755_1521232_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08365.1|1521376_1521703_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08369.1|1521745_1522867_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08374.1|1522881_1523064_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08378.1|1523063_1523393_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08382.1|1523402_1524602_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR08386.1|1524631_1525225_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08389.1|1525224_1525491_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08392.1|1525513_1525897_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR08397.1|1525893_1526118_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR08400.1|1526121_1526496_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08405.1|1526473_1526590_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08409.1|1526630_1527137_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
1526602:1526629	attR	TATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
SPR08414.1|1527123_1527444_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08417.1|1527394_1527499_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08421.1|1527791_1528322_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08425.1|1528331_1528952_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08431.1|1529025_1529556_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08433.1|1529534_1529888_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08438.1|1529916_1530159_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08443.1|1530538_1531501_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR08448.1|1532182_1533235_-	ankyrin repeat-containing protein 19	NA	NA	NA	NA	NA
SPR08455.1|1533726_1534083_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR08459.1|1534269_1534776_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	2.2e-14
SPR08464.1|1534762_1535137_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08468.1|1535308_1536820_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR08472.1|1537168_1537882_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08477.1|1538048_1538387_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08482.1|1538408_1538747_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.6e-05
SPR08486.1|1538901_1539276_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08491.1|1539343_1540750_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08493.1|1540885_1541011_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08498.1|1540988_1541288_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR08504.1|1541625_1542021_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR08508.1|1542617_1543412_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08513.1|1543849_1544746_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08517.1|1544893_1545157_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR08522.1|1545235_1546198_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	5.1e-84
SPR08525.1|1546319_1546538_-	(p)ppGpp synthetase	NA	NA	NA	NA	NA
SPR08529.1|1546642_1546981_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	1.6e-05
SPR08535.1|1547135_1547510_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 18
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1558638	1609005	2465012	transposase,integrase,tRNA	Indivirus(33.33%)	53	1558829:1558888	1621036:1621107
SPR08594.1|1558638_1558833_+|transposase	transposase	transposase	NA	NA	NA	NA
1558829:1558888	attL	TATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAAAA	NA	NA	NA	NA
SPR08599.1|1558900_1559275_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08603.1|1559428_1559767_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.1	2.8e-05
SPR08608.1|1560413_1561340_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.5	1.9e-35
SPR08612.1|1561423_1564093_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	24.1	1.5e-32
SPR08617.1|1564145_1565678_-	ATP/ADP translocase	NA	NA	NA	NA	NA
SPR08621.1|1566044_1566902_+	rRNA (cytidine-2'-O-)-methyltransferase	NA	NA	NA	NA	NA
SPR08625.1|1566903_1568193_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.0e-100
SPR08630.1|1568170_1568938_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	8.0e-32
SPR08635.1|1568918_1569053_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08639.1|1569083_1569680_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR08644.1|1569686_1570484_+	chromosome partitioning protein ParA	NA	F0PIG8	Enterococcus_phage	33.0	8.6e-13
SPR08648.1|1570495_1571377_+	chromosome partitioning protein	NA	A0A0F7L836	uncultured_marine_virus	25.3	2.5e-05
SPR08653.1|1572277_1572382_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08657.1|1572332_1572653_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08662.1|1572630_1573146_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	2.3e-14
SPR08666.1|1573193_1574885_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08671.1|1574894_1575059_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08676.1|1575119_1575971_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
SPR08681.1|1576070_1576715_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08686.1|1577173_1577293_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08690.1|1578506_1578713_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08694.1|1579006_1579474_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08697.1|1579588_1580581_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08703.1|1580590_1582345_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08709.1|1582350_1583499_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR08715.1|1583525_1585745_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR08718.1|1585731_1586118_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR08722.1|1586306_1586936_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR08727.1|1586932_1587616_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08730.1|1587627_1589178_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR08734.1|1589174_1589558_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR08739.1|1589580_1590453_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08744.1|1590467_1591667_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR08749.1|1591676_1592006_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08755.1|1592005_1593331_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR08760.1|1593373_1593700_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08764.1|1593834_1594143_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08768.1|1594287_1594707_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR08773.1|1594706_1595009_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08779.1|1595133_1595736_-|integrase	integrase	integrase	A0A1S5RGU2	Helicobacter_phage	26.9	4.8e-08
SPR08783.1|1596232_1596553_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR08788.1|1597060_1597495_-	membrane protein	NA	NA	NA	NA	NA
SPR08793.1|1597503_1598538_-	ferrochelatase	NA	NA	NA	NA	NA
SPR08798.1|1598530_1599559_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
SPR08803.1|1601048_1602554_+	transcription termination factor Rho	NA	NA	NA	NA	NA
SPR08808.1|1603336_1603486_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR08812.1|1603611_1603920_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08817.1|1603936_1604065_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08823.1|1604079_1604757_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08826.1|1605051_1606335_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08831.1|1606468_1606651_+	replicative DNA helicase	NA	NA	NA	NA	NA
SPR08835.1|1607136_1609005_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
1621036:1621107	attR	TATAGCACGAACGTAGGAAATAGGTACATAATATGCCAATATGAAAAGAGTATAAAAAAAAATAGATAAATA	NA	NA	NA	NA
>prophage 19
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1619565	1664171	2465012	transposase,tRNA	Indivirus(38.46%)	57	NA	NA
SPR08874.1|1619565_1619919_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR08886.1|1620869_1621007_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08890.1|1621107_1621482_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08895.1|1621468_1621858_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	5.3e-08
SPR08898.1|1622555_1623950_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08903.1|1624852_1625227_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08912.1|1625204_1625348_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08917.1|1625361_1625868_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	1.7e-14
SPR08923.1|1625854_1626229_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08928.1|1626520_1629748_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	27.2	3.2e-21
SPR08933.1|1629946_1630219_+|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR08937.1|1630509_1630638_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR08942.1|1630954_1631329_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08946.1|1631483_1631822_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08950.1|1631985_1632102_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08954.1|1632478_1632751_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08958.1|1633037_1633277_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR08963.1|1633593_1633767_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR08968.1|1633794_1634802_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
SPR08973.1|1635356_1635677_-	(p)pGpp hydrolase	NA	A0A292GI44	Xanthomonas_phage	38.1	4.8e-07
SPR08978.1|1635777_1636635_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR08982.1|1636656_1637385_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR08986.1|1637735_1638539_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	25.7	4.5e-17
SPR08988.1|1638637_1639894_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08992.1|1639937_1640390_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR08997.1|1640443_1640725_-	ankyrin	NA	NA	NA	NA	NA
SPR09001.1|1641055_1641445_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	7.0e-08
SPR09006.1|1641431_1641806_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09011.1|1641925_1642264_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.3	2.1e-05
SPR09016.1|1642327_1642627_-	Cell division protein FtsB	NA	NA	NA	NA	NA
SPR09021.1|1642634_1643288_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
SPR09026.1|1643290_1643917_-	UDP pyrophosphate synthase	NA	R9W0U9	Flavobacterium_phage	43.9	3.1e-18
SPR09031.1|1644019_1644124_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09035.1|1644172_1644352_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09040.1|1644761_1645178_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	38.4	4.1e-06
SPR09044.1|1645169_1646681_-	ATPase AAA	NA	NA	NA	NA	NA
SPR09048.1|1647089_1647194_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR09052.1|1647452_1647815_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09059.1|1648075_1648204_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09064.1|1648245_1648401_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09185.1|1648609_1650094_+	ankyrin repeat-containing protein 13	NA	A0A1V0S7Q4	Shearwaterpox_virus	28.7	4.5e-07
SPR09191.1|1650531_1652184_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.6	2.1e-45
SPR09195.1|1652167_1653019_+	ATPase	NA	NA	NA	NA	NA
SPR09200.1|1653344_1654223_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
SPR09205.1|1654219_1655149_+	elongation factor Ts	NA	NA	NA	NA	NA
SPR09209.1|1655235_1657677_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR09213.1|1657673_1658708_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.7	5.4e-31
SPR09218.1|1659499_1659622_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09223.1|1659646_1660153_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	1.7e-14
SPR09228.1|1660139_1660514_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09233.1|1660829_1661225_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09237.1|1662105_1662495_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09240.1|1662658_1662961_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09245.1|1663063_1663189_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09250.1|1663551_1663803_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09255.1|1663814_1663919_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09259.1|1664033_1664171_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
>prophage 20
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1673426	1725803	2465012	transposase,integrase	Streptococcus_phage(30.0%)	51	1695702:1695718	1722117:1722133
SPR09291.1|1673426_1673651_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR09296.1|1674300_1674576_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09300.1|1674981_1677483_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09306.1|1677530_1680110_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09312.1|1680562_1682281_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09316.1|1682289_1683726_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	1.1e-71
SPR09319.1|1683961_1684537_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR09324.1|1684571_1685216_+	ankyrin	NA	A0A068ELT3	Penguinpox_virus	27.5	5.7e-07
SPR09337.1|1685263_1685812_+	membrane protein	NA	NA	NA	NA	NA
SPR09341.1|1685815_1686628_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	33.1	7.4e-28
SPR09346.1|1687112_1687634_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09351.1|1687744_1687942_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	48.2	6.0e-08
SPR09353.1|1688944_1689673_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09358.1|1689694_1690552_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR09363.1|1690652_1691228_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR09367.1|1691348_1692335_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.8e-84
SPR09374.1|1692402_1692858_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09377.1|1693134_1695954_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
1695702:1695718	attL	ACAAAATAAAGAATATG	NA	NA	NA	NA
SPR09383.1|1696222_1698886_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR09388.1|1698937_1700041_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09393.1|1700050_1701805_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09398.1|1701810_1702950_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR09402.1|1703089_1705615_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR09407.1|1705614_1706916_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR09412.1|1706912_1707629_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09418.1|1707640_1708201_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.8	2.0e-24
SPR09423.1|1708311_1709715_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR09429.1|1709966_1711655_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR09434.1|1711651_1712035_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR09439.1|1712057_1713002_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09443.1|1713035_1713209_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09448.1|1713293_1713953_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR09453.1|1713949_1716439_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR09458.1|1716419_1716749_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09462.1|1716748_1718077_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09466.1|1718115_1718451_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09471.1|1718857_1719346_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09476.1|1719342_1719894_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09481.1|1719893_1720217_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09486.1|1720320_1721604_-|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.3	7.6e-11
SPR09491.1|1722040_1722331_+	Uncharacterised protein	NA	NA	NA	NA	NA
1722117:1722133	attR	ACAAAATAAAGAATATG	NA	NA	NA	NA
SPR09495.1|1722290_1722419_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09497.1|1722679_1722901_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09502.1|1723020_1723395_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09507.1|1723548_1723887_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.1	2.8e-05
SPR09513.1|1723900_1724035_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09517.1|1724021_1724396_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09520.1|1724439_1724724_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09525.1|1724735_1724903_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09531.1|1724936_1725311_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09535.1|1725464_1725803_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	3.7e-05
>prophage 21
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1731282	1815542	2465012	transposase,integrase,tRNA,protease	Indivirus(57.14%)	117	1724864:1724892	1815587:1815614
1724864:1724892	attL	ATATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
SPR09563.1|1731282_1731657_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1724864:1724892	attL	ATATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
SPR09567.1|1731643_1731778_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09570.1|1731834_1732209_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09575.1|1732195_1732702_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	1.1e-13
SPR09580.1|1732870_1733053_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09585.1|1733194_1733311_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09589.1|1733322_1733457_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09594.1|1734819_1735038_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR09599.1|1735485_1735860_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09604.1|1735846_1736353_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR09609.1|1736549_1737629_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
SPR09614.1|1737632_1738760_-	cell division protein FtsW	NA	NA	NA	NA	NA
SPR09618.1|1738766_1740185_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
SPR09623.1|1740267_1740894_+	lipoate-protein ligase B	NA	NA	NA	NA	NA
SPR09626.1|1741041_1741398_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09631.1|1741409_1741790_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09636.1|1741749_1742052_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR09643.1|1742707_1744396_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR09648.1|1744392_1744782_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR09652.1|1744804_1745782_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09657.1|1745782_1745956_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09661.1|1746039_1746699_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR09666.1|1746695_1748345_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR09672.1|1748316_1749189_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR09676.1|1749169_1749499_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09680.1|1749498_1750818_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09684.1|1750860_1751187_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09688.1|1751321_1751630_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09693.1|1751774_1752194_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR09697.1|1752193_1752517_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09702.1|1752654_1753629_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	25.6	6.0e-16
SPR09707.1|1754028_1754229_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09712.1|1754313_1754775_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09717.1|1754889_1755279_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.7	8.5e-06
SPR09722.1|1755265_1755640_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09726.1|1756040_1756661_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
SPR09732.1|1757234_1757447_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09737.1|1757554_1757671_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09742.1|1757682_1757811_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09747.1|1758145_1758352_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR09751.1|1758615_1759422_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
SPR09756.1|1760267_1760399_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR09760.1|1760460_1760736_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09764.1|1761218_1761383_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09769.1|1761379_1761574_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09775.1|1764552_1765290_+	DNA-binding response regulator	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.5e-14
SPR09780.1|1765405_1767142_+	RNase J family beta-CASP ribonuclease	NA	NA	NA	NA	NA
SPR09784.1|1767224_1767524_+|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SPR09789.1|1767523_1769002_+|tRNA	glutamyl-tRNA(Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SPR09798.1|1769004_1770465_+|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	tRNA	NA	NA	NA	NA
SPR09804.1|1770719_1771064_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09809.1|1771041_1771335_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	2.4e-05
SPR09814.1|1771380_1771641_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
1771560:1771588	attR	ATATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
SPR09818.1|1771589_1772105_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	8.6e-14
1771560:1771588	attR	ATATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
SPR09822.1|1772082_1772457_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09826.1|1772499_1772784_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09831.1|1772795_1773170_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09835.1|1773226_1773433_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09840.1|1774803_1774932_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR09844.1|1774937_1775189_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09849.1|1775644_1775875_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09854.1|1775892_1776276_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR09859.1|1776317_1776629_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09864.1|1776970_1778119_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR09869.1|1778548_1778743_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR09874.1|1779514_1780048_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09881.1|1780799_1781192_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR09886.1|1781400_1781973_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09890.1|1782156_1782351_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR09895.1|1782980_1783265_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09899.1|1783308_1783683_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR09904.1|1783669_1784059_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	28.4	7.0e-08
SPR09908.1|1784125_1784305_-|transposase	DDE transposase family protein	transposase	NA	NA	NA	NA
SPR09913.1|1784472_1784595_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09918.1|1785105_1785966_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09925.1|1786044_1786512_-	single-stranded DNA-binding protein	NA	A0A1B1IVU7	uncultured_Mediterranean_phage	50.6	3.8e-37
SPR09930.1|1786871_1787141_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09934.1|1787142_1787361_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09939.1|1787354_1787624_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR09944.1|1788667_1789105_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09949.1|1789116_1789491_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09953.1|1789590_1789686_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09958.1|1789795_1790035_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
SPR09963.1|1790088_1790370_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09968.1|1790944_1791169_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR09973.1|1791168_1791396_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09976.1|1791494_1791755_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR09979.1|1791821_1792220_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.6	1.2e-07
SPR09984.1|1792705_1793989_+|integrase	integrase	integrase	A0A076YL28	Mesorhizobium_phage	24.5	2.0e-11
SPR09990.1|1794113_1794416_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR09995.1|1794415_1794835_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR10000.1|1794979_1795288_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10004.1|1795422_1795749_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10008.1|1795791_1797117_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10014.1|1797116_1797446_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10018.1|1797455_1798655_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR10023.1|1798684_1799278_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10028.1|1799277_1799544_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10032.1|1799566_1799950_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR10037.1|1799946_1800207_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR10041.1|1800236_1801634_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR10047.1|1801886_1802681_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR10053.1|1802791_1803358_+	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	41.8	2.0e-24
SPR10058.1|1803332_1804079_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10063.1|1804075_1804705_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10068.1|1804893_1805280_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10073.1|1805266_1806148_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR10077.1|1806148_1807501_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR10082.1|1807523_1808669_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR10086.1|1808672_1810427_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10091.1|1810436_1811468_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR10096.1|1811519_1812071_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10100.1|1812084_1813086_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10105.1|1813434_1814148_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10110.1|1814314_1814653_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10115.1|1814674_1815181_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	6.5e-14
SPR10119.1|1815167_1815542_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1815587:1815614	attR	TGTACCTATTTCCTACGTTCGTGCTATA	NA	NA	NA	NA
>prophage 22
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1829392	1921035	2465012	transposase,integrase,tRNA	Indivirus(23.81%)	100	1847487:1847502	1930568:1930602
SPR10208.1|1829392_1830841_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	5.7e-71
SPR10213.1|1831076_1831652_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	4.8e-05
SPR10217.1|1831689_1832334_+	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	2.4e-05
SPR10222.1|1832436_1832940_+	membrane protein	NA	NA	NA	NA	NA
SPR10227.1|1832943_1833753_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR10232.1|1834119_1834254_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10237.1|1834448_1834847_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10242.1|1834868_1835726_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10248.1|1835826_1836402_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	38.6	5.7e-06
SPR10253.1|1836522_1837521_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
SPR10258.1|1837593_1838049_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10262.1|1838326_1841167_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR10267.1|1841431_1844101_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR10272.1|1844152_1845148_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR10277.1|1845157_1846636_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10282.1|1846713_1847079_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR10287.1|1847133_1847640_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.0	5.5e-13
1847487:1847502	attL	TATGTTGATAAGCTTT	NA	NA	NA	NA
SPR10290.1|1847626_1848001_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1847487:1847502	attL	TATGTTGATAAGCTTT	NA	NA	NA	NA
SPR10295.1|1848004_1849246_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR10300.1|1849232_1849619_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10304.1|1849807_1850437_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10309.1|1850433_1851117_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10312.1|1851128_1852820_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR10317.1|1852816_1853206_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR10322.1|1853228_1854206_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10328.1|1854206_1854380_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10331.1|1854463_1855123_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR10337.1|1855119_1856328_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR10342.1|1856331_1857609_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR10346.1|1857589_1857919_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10352.1|1857918_1859238_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10356.1|1859280_1859607_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10360.1|1859741_1860050_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10365.1|1860194_1860614_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR10370.1|1860613_1860937_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10375.1|1861074_1861347_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10380.1|1861950_1862184_+	DNA methyltransferase	NA	NA	NA	NA	NA
SPR10386.1|1862703_1863153_-	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
SPR10391.1|1863446_1863644_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10395.1|1863619_1863991_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10400.1|1864331_1864484_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR10405.1|1865489_1865996_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.8	1.7e-14
SPR10410.1|1866000_1866357_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10415.1|1866721_1866823_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10420.1|1866942_1867341_-	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
SPR10426.1|1867423_1867930_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.9	1.3e-14
SPR10431.1|1867916_1868291_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10436.1|1868294_1868474_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10441.1|1868854_1869868_-	porphobilinogen synthase	NA	NA	NA	NA	NA
1868597:1868612	attR	AAAGCTTATCAACATA	NA	NA	NA	NA
SPR10446.1|1870038_1870728_+	protein TolQ	NA	NA	NA	NA	NA
1868597:1868612	attR	AAAGCTTATCAACATA	NA	NA	NA	NA
SPR10451.1|1870733_1871192_+	protein TolR	NA	NA	NA	NA	NA
SPR10457.1|1871178_1872399_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10462.1|1872498_1873290_-	NAD kinase	NA	NA	NA	NA	NA
SPR10467.1|1873302_1874337_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.3	1.4e-68
SPR10472.1|1874360_1874870_-	CarD family transcriptional regulator	NA	NA	NA	NA	NA
SPR10477.1|1875089_1875758_-	DNA polymerase III subunit epsilon	NA	A0A1B2LRV5	Wolbachia_phage	48.5	8.3e-09
SPR10482.1|1876501_1879939_+	sodium:proline symporter	NA	NA	NA	NA	NA
SPR10486.1|1880458_1880605_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10490.1|1880987_1881878_-|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	62.5	1.2e-87
SPR10495.1|1881988_1882117_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10500.1|1882319_1882814_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10503.1|1883475_1883655_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR10509.1|1883722_1884589_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	25.4	4.4e-18
SPR10514.1|1885028_1887485_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10519.1|1887804_1888608_-	peptide chain release factor 1	NA	NA	NA	NA	NA
SPR10524.1|1889056_1890862_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	32.6	3.3e-20
SPR10529.1|1891191_1891566_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10534.1|1891577_1891862_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10539.1|1891905_1892235_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10546.1|1892221_1892728_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	1.4e-13
SPR10551.1|1892741_1893116_-	ankyrin	NA	A0A068ELU4	Penguinpox_virus	41.3	8.2e-06
SPR10556.1|1893150_1893726_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	4.8e-05
SPR10560.1|1893961_1894753_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	44.4	7.2e-52
SPR10567.1|1895538_1897245_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10571.1|1897474_1898050_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.3	5.7e-06
SPR10576.1|1898084_1898729_+	ankyrin	NA	Q9JML4	Wolbachia_phage	43.3	2.4e-05
SPR10581.1|1898776_1898950_+	membrane protein	NA	NA	NA	NA	NA
SPR10586.1|1899243_1899618_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR10591.1|1899713_1900262_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR10596.1|1900376_1900577_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10601.1|1900705_1901944_+|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.2	2.4e-17
SPR10607.1|1902081_1902405_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10612.1|1902404_1902962_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR10617.1|1902951_1903428_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10622.1|1903544_1903637_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10625.1|1903929_1904262_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10629.1|1904300_1905617_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10634.1|1905616_1905946_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10639.1|1905926_1908416_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR10644.1|1908412_1909072_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR10649.1|1909155_1909329_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10654.1|1909329_1910307_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10660.1|1910329_1910713_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR10664.1|1910709_1912401_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR10680.1|1912412_1913096_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10685.1|1913092_1914394_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR10690.1|1914393_1917042_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR10695.1|1917057_1918203_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR10700.1|1918206_1919961_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR10705.1|1919970_1921035_-|transposase	transposase	transposase	NA	NA	NA	NA
1930568:1930602	attR	CTTCAGCTTTACCTTCAGCTTTACCTTCAGCTTTA	NA	NA	NA	NA
>prophage 23
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	1930391	2093921	2465012	transposase,integrase,tRNA	Indivirus(29.41%)	171	1962688:1962729	2094734:2094777
SPR10741.1|1930391_1931402_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.8e-84
SPR10745.1|1931522_1932110_-	hydrolase	NA	A0A2I2L310	Orpheovirus	29.0	3.4e-06
SPR10750.1|1932151_1932646_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10755.1|1932664_1933603_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10759.1|1933610_1934198_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10764.1|1934326_1935028_-	histidine kinase	NA	NA	NA	NA	NA
SPR10769.1|1935092_1935902_-	ATP-binding protein	NA	NA	NA	NA	NA
SPR10774.1|1936269_1937079_+	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR10779.1|1937082_1937586_-	membrane protein	NA	NA	NA	NA	NA
SPR10784.1|1937632_1938277_-	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	8.3e-06
SPR10788.1|1938314_1938890_-	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	1.6e-05
SPR10792.1|1939123_1940560_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.9	3.0e-72
SPR10797.1|1940568_1942134_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10802.1|1942243_1942435_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR10807.1|1942799_1943078_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10810.1|1943240_1944485_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	25.7	4.5e-16
SPR10815.1|1945459_1945858_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	6.4e-09
SPR10820.1|1945844_1946219_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10825.1|1946579_1947017_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10830.1|1947028_1947403_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10833.1|1947652_1947787_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10839.1|1947978_1950006_-	ribonuclease E/G	NA	NA	NA	NA	NA
SPR10845.1|1950795_1955235_+	spoT ppGpp synthetase	NA	NA	NA	NA	NA
SPR10850.1|1955688_1957668_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10856.1|1957733_1958057_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10861.1|1958059_1958362_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SPR10867.1|1958462_1959530_+	rod shape-determining protein	NA	NA	NA	NA	NA
SPR10872.1|1959536_1960388_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
SPR10877.1|1961143_1962412_+	ankyrin repeat-containing protein 09	NA	A0A1V0S7N0	Shearwaterpox_virus	28.7	1.1e-06
1962688:1962729	attL	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGTCTAAT	NA	NA	NA	NA
SPR10882.1|1962727_1962913_+	Uncharacterised protein	NA	NA	NA	NA	NA
1962688:1962729	attL	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGTCTAAT	NA	NA	NA	NA
SPR10887.1|1963089_1964850_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10892.1|1964957_1966430_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
SPR10897.1|1966570_1968154_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.2	3.5e-05
SPR10902.1|1968813_1970862_-	competence protein ComEC	NA	NA	NA	NA	NA
SPR10907.1|1971014_1971803_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10912.1|1972014_1972521_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR10917.1|1972626_1972869_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10920.1|1973641_1974175_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR10925.1|1974183_1975620_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	3.9e-72
SPR10930.1|1975829_1976279_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	32.1	8.3e-13
SPR10935.1|1976365_1976815_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR10941.1|1977559_1977934_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR10946.1|1978088_1978427_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR10951.1|1979797_1980160_-	ribosome-binding factor A	NA	NA	NA	NA	NA
SPR10956.1|1980190_1982734_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	27.3	2.1e-28
SPR10961.1|1982983_1984486_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
SPR10965.1|1984504_1984987_-	ribosome maturation factor	NA	NA	NA	NA	NA
SPR10970.1|1985576_1986350_+	ubiquinone biosynthesis protein	NA	NA	NA	NA	NA
SPR10975.1|1986346_1987735_+	ubiquinone biosynthesis protein UbiB	NA	A0A0R6PKQ6	Moraxella_phage	25.9	2.9e-32
SPR10980.1|1987876_1988311_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10986.1|1988264_1988639_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR10990.1|1988932_1989043_+|transposase	transposase	transposase	NA	NA	NA	NA
1988620:1988661	attR	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGTCTAAT	NA	NA	NA	NA
SPR10995.1|1989671_1989911_+|transposase	transposase	transposase	NA	NA	NA	NA
1988620:1988661	attR	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGTCTAAT	NA	NA	NA	NA
SPR11001.1|1990643_1993454_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11006.1|1993952_1994327_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11011.1|1994504_1994879_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11016.1|1994865_1995162_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	26.8	3.2e-05
SPR11019.1|1995267_1995474_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11025.1|1995937_1996066_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11031.1|1996183_1996312_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11035.1|1996406_1996754_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11040.1|1997001_1997352_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SPR11045.1|1997323_1997578_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SPR11050.1|1997561_1998008_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
SPR11056.1|1998028_1998937_-	lipoyl synthase	NA	NA	NA	NA	NA
SPR11060.1|1998947_1999856_-	signal peptide peptidase SppA	NA	NA	NA	NA	NA
SPR11065.1|1999876_2000338_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	48.6	1.4e-28
SPR11070.1|2000340_2001237_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
SPR11075.1|2001217_2002120_-	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
SPR11080.1|2002331_2004527_-	ATPase AAA	NA	A0A0H3UZA5	Geobacillus_virus	27.4	1.5e-54
SPR11084.1|2004553_2004928_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
SPR11089.1|2004924_2005689_-|tRNA	tRNA (guanine(37)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
SPR11094.1|2005735_2007565_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11098.1|2007566_2008133_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11102.1|2008183_2009557_-	transporter	NA	NA	NA	NA	NA
SPR11109.1|2009839_2010829_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.8	1.3e-29
SPR11113.1|2011537_2012011_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR11120.1|2012005_2012728_-	surfeit locus protein 1	NA	NA	NA	NA	NA
SPR11125.1|2012967_2013471_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
SPR11131.1|2013474_2014047_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR11136.1|2014046_2015402_+	DNA repair protein RadA	NA	NA	NA	NA	NA
SPR11141.1|2015441_2016362_-	membrane protein	NA	NA	NA	NA	NA
SPR11146.1|2016511_2018410_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11149.1|2018455_2020384_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11153.1|2021427_2021667_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR11158.1|2021638_2021893_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR11163.1|2023080_2023218_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR11169.1|2023859_2024099_+	ankyrin	NA	Q9JML4	Wolbachia_phage	43.3	2.0e-05
SPR11174.1|2024385_2024568_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11178.1|2024689_2025184_+	membrane protein	NA	NA	NA	NA	NA
SPR11184.1|2025187_2025997_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR11189.1|2026609_2026900_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11193.1|2026997_2027168_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11198.1|2027212_2027401_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11203.1|2027533_2027824_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11206.1|2028068_2028419_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11211.1|2028506_2028695_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11217.1|2028739_2028910_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11221.1|2029007_2029298_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11226.1|2029728_2029869_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR11229.1|2030496_2030871_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11234.1|2030857_2031364_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	1.4e-13
SPR11239.1|2031870_2032026_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11244.1|2032132_2033089_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	34.1	1.4e-38
SPR11250.1|2033078_2035130_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
SPR11255.1|2035122_2036001_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
SPR11258.1|2036544_2038119_+	Type surface antigen 56 (56 kDa)	NA	NA	NA	NA	NA
SPR11263.1|2038349_2039090_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11268.1|2039257_2040766_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
SPR11273.1|2040734_2041646_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
SPR11276.1|2041626_2042598_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
SPR11281.1|2042590_2043421_+	cell division protein FtsQ	NA	NA	NA	NA	NA
SPR11286.1|2043438_2044578_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
SPR11290.1|2045277_2045463_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR11295.1|2045881_2046256_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11300.1|2046242_2046749_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.5e-14
SPR11305.1|2046770_2047040_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11310.1|2047017_2047425_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.6	5.6e-08
SPR11314.1|2047759_2047897_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11328.1|2048011_2048116_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11332.1|2048127_2048379_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11338.1|2048861_2049038_-	ankyrin	NA	NA	NA	NA	NA
SPR11343.1|2049272_2049425_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11348.1|2049609_2050629_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR11352.1|2050680_2050938_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11357.1|2051527_2051659_-	ankyrin	NA	NA	NA	NA	NA
SPR11362.1|2051863_2051989_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11367.1|2052122_2052272_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11370.1|2052231_2052723_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11374.1|2052837_2053056_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11379.1|2053689_2054175_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
SPR11384.1|2056008_2058240_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11387.1|2058917_2059055_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11391.1|2059088_2059955_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	25.7	3.3e-18
SPR11396.1|2059976_2060297_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11403.1|2060250_2060622_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11407.1|2060895_2061069_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11411.1|2061447_2064090_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
SPR11416.1|2064335_2065364_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
SPR11421.1|2065454_2066786_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
SPR11426.1|2067045_2068992_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	8.9e-120
SPR11431.1|2069002_2069548_+	translation initiation factor IF-3	NA	A0A2I7S9Q1	Vibrio_phage	36.1	3.5e-13
SPR11436.1|2069868_2070315_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	V9SFR6	Tunisvirus	55.4	2.6e-35
SPR11440.1|2070409_2070955_+	ATP synthase subunit delta	NA	NA	NA	NA	NA
SPR11444.1|2070998_2072537_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
SPR11449.1|2072551_2073442_+	ATPase	NA	NA	NA	NA	NA
SPR11454.1|2073452_2074085_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11458.1|2074086_2075700_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11463.1|2075832_2078499_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.5	2.3e-70
SPR11469.1|2078673_2080131_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
SPR11472.1|2080131_2080476_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
SPR11477.1|2080641_2082414_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
SPR11483.1|2082425_2083178_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
SPR11488.1|2083317_2083449_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11492.1|2083502_2083880_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR11496.1|2084087_2084882_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11501.1|2085001_2085205_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR11506.1|2085632_2086466_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11510.1|2086446_2086581_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR11515.1|2086662_2086911_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11520.1|2087046_2087436_-|integrase	integrase	integrase	A0A221SAN4	Ralstonia_phage	39.1	2.6e-07
SPR11526.1|2087553_2088387_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR11530.1|2088857_2089364_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	2.5e-13
SPR11534.1|2089350_2089725_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11539.1|2090469_2090868_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.5	6.4e-09
SPR11543.1|2090854_2091229_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11548.1|2091232_2091412_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11553.1|2091736_2091925_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11558.1|2092104_2092479_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11563.1|2092490_2092874_-|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11568.1|2093465_2093921_+|integrase	integrase	integrase	NA	NA	NA	NA
2094734:2094777	attR	ATATTAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 24
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	2101595	2123966	2465012	transposase	Indivirus(50.0%)	27	NA	NA
SPR11609.1|2101595_2101913_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR11615.1|2101937_2102144_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11620.1|2102149_2102275_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11625.1|2102335_2102443_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11630.1|2102429_2102804_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11635.1|2102869_2103037_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11641.1|2103300_2103624_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR11646.1|2103834_2105490_+	ankyrin repeat-containing protein 09	NA	NA	NA	NA	NA
SPR11651.1|2105518_2105662_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11655.1|2105773_2106148_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11663.1|2106134_2106641_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	2.9e-14
SPR11667.1|2107915_2108086_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
SPR11672.1|2108094_2108424_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
SPR11677.1|2110858_2111092_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR11682.1|2112522_2112618_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR11687.1|2113263_2113629_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
SPR11693.1|2113648_2113855_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
SPR11697.1|2114294_2116187_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.9	1.2e-89
SPR11702.1|2116351_2117518_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPR11708.1|2117671_2119138_+	trigger factor	NA	NA	NA	NA	NA
SPR11713.1|2119299_2119806_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	2.5e-13
SPR11718.1|2119792_2120167_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR11723.1|2120234_2121641_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11727.1|2121776_2121902_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11730.1|2121879_2122179_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR11735.1|2122516_2122912_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR11740.1|2122979_2123966_-|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
>prophage 25
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	2189158	2239748	2465012	transposase,integrase	Pseudomonas_phage(18.18%)	50	2197710:2197729	2243870:2243889
SPR12134.1|2189158_2189473_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12138.1|2189421_2189889_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12143.1|2190136_2191675_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
SPR12150.1|2191712_2193467_-	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	39.0	1.2e-25
SPR12154.1|2194255_2194405_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12159.1|2194784_2196299_+	lipid II flippase MurJ	NA	NA	NA	NA	NA
SPR12166.1|2196335_2196716_-	Uncharacterised protein	NA	NA	NA	NA	NA
2197710:2197729	attL	TATAATAGACTTCTTTCAAA	NA	NA	NA	NA
SPR12171.1|2197887_2199081_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12177.1|2200097_2200319_-	ankyrin	NA	Q9JML4	Wolbachia_phage	43.3	3.1e-05
SPR12181.1|2200960_2201152_+	reverse transcriptase	NA	NA	NA	NA	NA
SPR12188.1|2201260_2202139_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12192.1|2202248_2203964_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12197.1|2203972_2205421_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.2	2.2e-70
SPR12203.1|2205654_2206230_+	(p)pGpp hydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	1.3e-05
SPR12207.1|2206267_2206912_+	ankyrin	NA	A0A167R1M3	Powai_lake_megavirus	31.1	5.3e-13
SPR12212.1|2206958_2207366_+	membrane protein	NA	NA	NA	NA	NA
SPR12217.1|2207469_2208279_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR12223.1|2208645_2209374_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12228.1|2209395_2210253_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12231.1|2210353_2210929_+	(p)pGpp hydrolase	NA	B3FJI5	Pseudomonas_phage	37.1	3.3e-06
SPR12236.1|2211015_2211561_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12241.1|2211663_2212119_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12246.1|2212397_2215265_+	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	24.3	8.2e-05
SPR12251.1|2215530_2217021_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12254.1|2217128_2217635_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12259.1|2217648_2218200_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12263.1|2218184_2219201_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12268.1|2219223_2220966_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12274.1|2220971_2222111_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12279.1|2222123_2224793_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12283.1|2224792_2225248_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12288.1|2225201_2226062_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12293.1|2226102_2226849_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12299.1|2226823_2227390_-	Uncharacterised protein	NA	I6R0L8	Salmonella_phage	40.4	1.2e-24
SPR12304.1|2227499_2228483_-	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12307.1|2228853_2230542_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12312.1|2230538_2230928_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR12315.1|2230950_2231823_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12319.1|2231919_2232579_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR12324.1|2232575_2234225_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12329.1|2234196_2235069_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12334.1|2235049_2235379_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12339.1|2235378_2235561_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12344.1|2235575_2236697_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12349.1|2236739_2237066_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12354.1|2237200_2237509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12359.1|2237653_2238073_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
SPR12364.1|2238072_2238396_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12369.1|2238533_2239211_-|integrase	integrase	integrase	A0A0M3LQN1	Mannheimia_phage	27.3	6.6e-14
SPR12374.1|2239319_2239748_-|integrase	integrase	integrase	H2BDA3	Pseudomonas_phage	33.3	7.9e-05
2243870:2243889	attR	TATAATAGACTTCTTTCAAA	NA	NA	NA	NA
>prophage 26
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	2243939	2272484	2465012	transposase,integrase	Indivirus(75.0%)	45	2256241:2256277	2269206:2269242
SPR12399.1|2243939_2244095_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12404.1|2244260_2244377_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12406.1|2244388_2244763_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12412.1|2244952_2245459_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR12416.1|2245445_2245766_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12421.1|2245716_2245821_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12426.1|2246173_2246680_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
SPR12430.1|2246693_2249036_-	sodium:proline symporter	NA	NA	NA	NA	NA
SPR12435.1|2249392_2249554_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12440.1|2249789_2250971_-	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	22.3	6.2e-15
SPR12444.1|2251827_2252076_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12448.1|2252756_2253032_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12451.1|2253040_2253367_+	DNA helicase	NA	G9BWB0	Planktothrix_phage	30.7	8.4e-07
SPR12456.1|2253446_2253626_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12462.1|2253629_2254004_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12466.1|2253990_2254497_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.0	2.9e-14
SPR12471.1|2254510_2254654_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12475.1|2254631_2255006_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12479.1|2255062_2255377_-|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	28.8	2.0e-05
SPR12484.1|2255530_2255905_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2256241:2256277	attL	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGT	NA	NA	NA	NA
SPR12489.1|2256938_2257688_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12493.1|2257800_2258436_-	transporter	NA	NA	NA	NA	NA
SPR12502.1|2258736_2259045_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12507.1|2259096_2259267_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12510.1|2260557_2261712_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
SPR12514.1|2262151_2262274_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12518.1|2262299_2262422_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12522.1|2262698_2262851_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12526.1|2263024_2263531_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	2.5e-13
SPR12529.1|2263517_2263892_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12533.1|2264131_2264347_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12537.1|2265214_2265436_-|transposase	transposase	transposase	NA	NA	NA	NA
SPR12541.1|2265986_2266286_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12545.1|2267179_2267350_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12549.1|2267500_2267812_+	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12552.1|2267963_2268401_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12556.1|2268412_2268787_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12560.1|2269245_2269398_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
2269206:2269242	attR	ATAATTTTGAACTACGTTAACCAGTTTCGAAAGAGGT	NA	NA	NA	NA
SPR12564.1|2269489_2269735_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12568.1|2270015_2270333_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12572.1|2270622_2271105_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12578.1|2271131_2271461_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12583.1|2271441_2271603_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12585.1|2271616_2272123_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	31.0	1.4e-13
SPR12589.1|2272109_2272484_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 27
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	2285761	2329387	2465012	transposase,integrase	Indivirus(42.86%)	58	2316189:2316217	2342279:2342307
SPR12644.1|2285761_2286688_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.7	3.4e-85
SPR12647.1|2286978_2287512_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12651.1|2287775_2288351_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12654.1|2288439_2288895_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12659.1|2289171_2292030_+	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	23.9	9.7e-06
SPR12663.1|2292295_2294965_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR12666.1|2295016_2295952_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR12670.1|2295961_2297716_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12674.1|2297721_2298870_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12678.1|2298896_2301116_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12683.1|2301102_2301489_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12687.1|2301677_2302307_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12691.1|2302303_2302987_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12695.1|2302998_2304549_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12699.1|2304545_2304929_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR12705.1|2304951_2305218_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12711.1|2305217_2305931_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12714.1|2305931_2306105_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12718.1|2306188_2306848_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR12722.1|2306844_2308053_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12726.1|2308056_2308491_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12730.1|2308462_2309335_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12734.1|2309315_2309645_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12738.1|2309644_2310973_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12741.1|2311015_2311342_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12745.1|2311476_2311965_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12749.1|2311961_2312114_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12753.1|2312094_2312514_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12757.1|2312513_2312816_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12761.1|2312940_2314224_-|integrase	integrase	integrase	A0A076YL28	Mesorhizobium_phage	24.1	2.2e-10
SPR12765.1|2314660_2314960_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12769.1|2314940_2315246_+	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR12773.1|2315270_2315777_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR12777.1|2315763_2316138_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2316189:2316217	attL	TGTACCTATTTCCTACGTTCGTGCTATAT	NA	NA	NA	NA
SPR12781.1|2316200_2316320_-	reverse transcriptase	NA	NA	NA	NA	NA
SPR12793.1|2316756_2316984_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12798.1|2317116_2317407_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12802.1|2317539_2317728_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12806.1|2317772_2317943_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12809.1|2318040_2318331_-|integrase	integrase	integrase	NA	NA	NA	NA
SPR12813.1|2318758_2319055_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR12817.1|2319200_2320445_+	ankyrin repeat-containing protein 16	NA	A0A0M3PB69	Turkeypox_virus	34.5	1.1e-06
SPR12822.1|2320639_2321356_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12826.1|2321352_2322246_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12828.1|2322199_2322556_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR12832.1|2322542_2324117_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12835.1|2324205_2324562_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12839.1|2324573_2324948_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR12843.1|2324934_2325675_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR12848.1|2325687_2326077_+	TPR repeat-containing protein 03	NA	NA	NA	NA	NA
SPR12852.1|2326153_2326258_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12854.1|2326208_2326529_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12858.1|2326506_2327022_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	29.3	5.0e-14
SPR12862.1|2327117_2327804_+	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR12867.1|2327809_2328325_+	conjugal transfer protein	NA	NA	NA	NA	NA
SPR12873.1|2328318_2328495_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
SPR12877.1|2328519_2329035_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.6e-14
SPR12881.1|2329012_2329387_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2342279:2342307	attR	ATATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
>prophage 28
LS398551	Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I	2465012	2334223	2454297	2465012	transposase,integrase,tRNA,protease	Indivirus(26.92%)	118	2352308:2352335	2392893:2392920
SPR12893.1|2334223_2336743_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	38.5	3.7e-158
SPR12897.1|2336762_2337782_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
SPR12900.1|2337970_2339335_+	magnesium transporter	NA	NA	NA	NA	NA
SPR12904.1|2339431_2340922_-	carboxypeptidase M32	NA	NA	NA	NA	NA
SPR12907.1|2342161_2342284_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12911.1|2342308_2342815_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.5e-14
SPR12916.1|2343231_2343504_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12918.1|2343547_2344249_+|integrase	integrase	integrase	NA	NA	NA	NA
SPR12922.1|2344335_2344632_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12926.1|2344900_2345407_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.1	8.5e-14
SPR12930.1|2345393_2345768_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12934.1|2345998_2347762_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.1	1.6e-59
SPR12939.1|2347775_2348249_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
SPR12943.1|2348245_2349160_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12946.1|2349190_2349586_-	cytochrome c biogenesis protein CcmE	NA	NA	NA	NA	NA
SPR12949.1|2349893_2351039_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
SPR12953.1|2352159_2352279_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
2352308:2352335	attL	TATAGCACGAACGTAGGAAATAGGTACA	NA	NA	NA	NA
SPR12955.1|2352336_2352843_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR12958.1|2352829_2353150_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12961.1|2353100_2353205_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR12963.1|2353678_2355394_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR12966.1|2355402_2356839_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.0	8.7e-72
SPR12969.1|2357076_2357652_+	(p)pGpp hydrolase	NA	NA	NA	NA	NA
SPR12972.1|2357689_2358334_+	ankyrin	NA	Q9JML4	Wolbachia_phage	45.0	2.4e-05
SPR12975.1|2358380_2358884_+	membrane protein	NA	NA	NA	NA	NA
SPR12978.1|2358887_2359697_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
SPR12981.1|2360071_2360800_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12984.1|2360821_2361679_+	ATP-binding protein	NA	NA	NA	NA	NA
SPR12987.1|2361779_2362355_+	(p)pGpp hydrolase	NA	A0A292GI44	Xanthomonas_phage	34.9	3.3e-06
SPR12991.1|2362475_2363570_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.5e-84
SPR12994.1|2363637_2364093_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR12997.1|2364371_2367218_+	conjugal transfer protein TraA	NA	A0A2H4ZK82	Cryptophlebia_leucotreta_granulosis_virus	23.5	4.8e-05
SPR13000.1|2367482_2370152_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13004.1|2370203_2370764_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13007.1|2370779_2371742_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
SPR13010.1|2371970_2372444_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13013.1|2372453_2373440_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13015.1|2373450_2374209_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13019.1|2374212_2375358_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13022.1|2375373_2378019_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
SPR13026.1|2378018_2379320_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
SPR13028.1|2379316_2380000_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13031.1|2380011_2381703_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
SPR13034.1|2381699_2382083_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
SPR13038.1|2382105_2383083_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13039.1|2383083_2383257_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13042.1|2383340_2384000_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
SPR13046.1|2383996_2386486_-	conjugal transfer protein TraC	NA	NA	NA	NA	NA
SPR13049.1|2386466_2386796_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13052.1|2386795_2388112_-	conjugal transfer protein	NA	NA	NA	NA	NA
SPR13054.1|2388154_2388484_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13057.1|2388617_2388845_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13060.1|2388989_2389466_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13063.1|2389462_2390014_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13066.1|2390013_2390337_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13069.1|2390404_2391724_-|integrase	integrase	integrase	A0A0S2GLI2	Bacillus_phage	24.0	3.0e-10
SPR13072.1|2392218_2392725_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	2.2e-14
SPR13075.1|2392841_2393330_+	membrane protein	NA	NA	NA	NA	NA
2392893:2392920	attR	TGTACCTATTTCCTACGTTCGTGCTATA	NA	NA	NA	NA
SPR13078.1|2393352_2394162_-	DNA methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
SPR13081.1|2394395_2394815_+	hydrolase	NA	NA	NA	NA	NA
SPR13084.1|2394936_2395272_+|transposase	transposase	transposase	A0A1B2LRR6	Wolbachia_phage	68.5	4.7e-37
SPR13087.1|2395365_2395815_+|transposase	transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	49.7	6.3e-29
SPR13090.1|2396403_2396994_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13093.1|2397329_2397773_-	conjugative transfer protein	NA	NA	NA	NA	NA
SPR13096.1|2398050_2398350_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13099.1|2398327_2398453_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13101.1|2398588_2399368_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
SPR13105.1|2399447_2400677_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
SPR13109.1|2400690_2401197_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	30.3	2.5e-13
SPR13111.1|2401245_2401473_-	Aconitate hydratase A	NA	NA	NA	NA	NA
SPR13114.1|2401845_2402451_+	cytochrome c biogenesis protein CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	7.8e-06
SPR13116.1|2402447_2403098_+	heme exporter protein B	NA	NA	NA	NA	NA
SPR13119.1|2403251_2404391_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13122.1|2404502_2405168_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
SPR13125.1|2405317_2406514_+	cytochrome b	NA	NA	NA	NA	NA
SPR13128.1|2407110_2407554_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13131.1|2408085_2411019_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13134.1|2411358_2412642_-	amino acid transporter	NA	NA	NA	NA	NA
SPR13137.1|2414164_2414671_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	29.3	8.5e-14
SPR13140.1|2414657_2415032_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13142.1|2415354_2416161_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
SPR13145.1|2416390_2416885_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13148.1|2416838_2417075_+|transposase	IS5 family transposase ISOt6	transposase	NA	NA	NA	NA
SPR13150.1|2417189_2417459_-	TPR repeat-containing protein 08	NA	NA	NA	NA	NA
SPR13153.1|2417962_2418301_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	27.2	1.6e-05
SPR13155.1|2418455_2418830_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13157.1|2419155_2419575_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13159.1|2419589_2421368_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	6.2e-27
SPR13161.1|2421417_2422170_-	UMP kinase	NA	NA	NA	NA	NA
SPR13163.1|2422398_2423490_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
SPR13165.1|2423479_2424889_-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA	NA
SPR13167.1|2424885_2426355_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
SPR13168.1|2426341_2428093_-	penicillin-binding protein	NA	NA	NA	NA	NA
SPR13171.1|2428292_2428553_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13173.1|2428593_2429496_-	16S rRNA methyltransferase	NA	NA	NA	NA	NA
SPR13175.1|2429600_2430734_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	29.3	3.2e-29
SPR13177.1|2430822_2432751_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	46.7	3.4e-140
SPR13179.1|2433130_2433418_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
SPR13182.1|2433626_2434424_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
SPR13185.1|2434561_2434753_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
SPR13187.1|2434840_2435107_-	Uncharacterised protein	NA	A0A0U4J920	Pseudomonas_phage	48.3	2.6e-14
SPR13190.1|2435520_2435658_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13193.1|2435838_2436018_+|transposase	transposase	transposase	NA	NA	NA	NA
SPR13196.1|2437173_2437293_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPR13200.1|2437476_2437971_-	protein-export protein SecB	NA	NA	NA	NA	NA
SPR13203.1|2438012_2438579_-	deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	55.7	2.8e-58
SPR13206.1|2439181_2440462_+	porin	NA	NA	NA	NA	NA
SPR13210.1|2440656_2441220_-	ribosome-recycling factor	NA	NA	NA	NA	NA
SPR13213.1|2441499_2443539_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
SPR13216.1|2443595_2444639_+	NADH:ubiquinone oxidoreductase subunit H	NA	NA	NA	NA	NA
SPR13218.1|2444692_2445178_+	NADH-quinone oxidoreductase subunit I	NA	NA	NA	NA	NA
SPR13221.1|2445181_2445790_+	NADH:ubiquinone oxidoreductase subunit J	NA	NA	NA	NA	NA
SPR13224.1|2445773_2446097_+	NADH-quinone oxidoreductase subunit K	NA	NA	NA	NA	NA
SPR13226.1|2446100_2448008_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
SPR13229.1|2448008_2449508_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
SPR13233.1|2449552_2450989_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
SPR13235.1|2451071_2452397_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
SPR13238.1|2452413_2454297_+|protease	ATP-dependent metalloprotease	protease	C7U047	Ostreococcus_tauri_virus	46.4	1.9e-111
