The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LT992492	Vibrio cholerae strain 4295STDY6534248 genome assembly, chromosome: 1	3041945	647262	653879	3041945		Staphylococcus_phage(66.67%)	7	NA	NA
SPM20561.1|647262_648396_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
SPM20562.1|648407_649658_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
SPM20563.1|649757_650207_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
SPM20564.1|650232_651336_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
SPM20565.1|651340_651994_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
SPM20566.1|652034_653144_+	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
SPM20567.1|653408_653879_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
LT992492	Vibrio cholerae strain 4295STDY6534248 genome assembly, chromosome: 1	3041945	1133964	1143229	3041945	integrase,transposase	Vibrio_phage(62.5%)	12	1131513:1131526	1148710:1148723
1131513:1131526	attL	CTTTGGGCTGTGGC	NA	NA	NA	NA
SPM21007.1|1133964_1134231_+	phage protein	NA	M1Q554	Vibrio_phage	33.8	1.4e-07
SPM21008.1|1134632_1135007_+	middle operon regulator-related protein	NA	NA	NA	NA	NA
SPM21009.1|1134993_1135314_+	transcriptional regulator	NA	NA	NA	NA	NA
SPM21010.1|1135332_1135911_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21011.1|1135971_1136343_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21012.1|1136391_1136751_+	Mu-like prophage FluMu protein gp41	NA	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
SPM21013.1|1136885_1137926_+	Mu-like prophage FluMu protein gp42	NA	A0A2I7S9D9	Vibrio_phage	72.5	2.6e-126
SPM21014.1|1137968_1138277_+|transposase	ISVch4 transposase, OrfA	transposase	Q716C1	Shigella_phage	76.3	7.1e-32
SPM21015.1|1138519_1139146_+|transposase	transposase OrfAB subunit B	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
SPM21016.1|1139359_1141312_+	putative helicase	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	26.7	3.1e-19
SPM21017.1|1141442_1141898_-|integrase	phage integrase	integrase	A0A1V0E8G8	Vibrio_phage	58.4	7.8e-43
SPM21018.1|1141993_1143229_-|integrase	Phage integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	1.2e-146
1148710:1148723	attR	CTTTGGGCTGTGGC	NA	NA	NA	NA
>prophage 3
LT992492	Vibrio cholerae strain 4295STDY6534248 genome assembly, chromosome: 1	3041945	1465163	1507171	3041945		Vibrio_phage(47.06%)	41	NA	NA
SPM21293.1|1465163_1465331_+	Uncharacterised protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
SPM21294.1|1465323_1465491_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21295.1|1466529_1467081_-	tlcR protein	NA	NA	NA	NA	NA
SPM21296.1|1467257_1468826_+	plasmid replication protein Cri	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
SPM21297.1|1468830_1469115_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21298.1|1469244_1469937_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21299.1|1470014_1470182_+	Uncharacterised protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
SPM21300.1|1470174_1470759_+	Phage protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
SPM21301.1|1471248_1471587_-	transcriptional repressor RstR	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
SPM21302.1|1471712_1472792_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM21303.1|1472772_1473144_+	RstB2 protein	NA	U5TMH5	Satellite_phage	99.2	5.7e-68
SPM21304.1|1473237_1473462_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
SPM21305.1|1473973_1474312_-	transcriptional repressor RstR	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
SPM21306.1|1474437_1475517_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM21307.1|1475497_1475878_+	RstB2 protein	NA	A0A0N9HE73	Vibrio_phage	100.0	1.4e-69
SPM21308.1|1475877_1476021_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21309.1|1476013_1476262_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
SPM21310.1|1476368_1477556_+	orfU	NA	A0A142I701	Vibrio_phage	100.0	1.4e-200
SPM21311.1|1477561_1477846_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM21312.1|1477842_1479042_+	zona occludens toxin	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
SPM21313.1|1479133_1479910_+	cholera enterotoxin, A subunit	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
SPM21314.1|1479906_1480281_+	cholera enterotoxin subunit B	NA	D1GID8	Vibrio_virus	100.0	5.9e-65
SPM21315.1|1481194_1481374_-	Uncharacterised protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
SPM21316.1|1481504_1482584_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM21317.1|1482564_1482942_+	RstB2 protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	6.8e-69
SPM21318.1|1482941_1483085_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21319.1|1483077_1483326_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
SPM21320.1|1483432_1484620_+	orfU	NA	Q8LTP3	Vibrio_virus	99.7	2.4e-192
SPM21321.1|1484625_1484910_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM21322.1|1484906_1486106_+	zona occludens toxin	NA	A0A023W604	Vibrio_virus	99.2	1.4e-237
SPM21323.1|1486197_1486974_+	cholera enterotoxin, A subunit	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
SPM21324.1|1486970_1487345_+	cholera enterotoxin subunit B	NA	D1GID0	Vibrio_virus	100.0	1.3e-64
SPM21325.1|1488258_1488438_-	Uncharacterised protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
SPM21326.1|1488568_1489648_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM21327.1|1489628_1490006_+	RstB2 protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	6.8e-69
SPM21328.1|1490005_1490149_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM21329.1|1490141_1490390_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
SPM21330.1|1490496_1491684_+	orfU	NA	Q8LTP3	Vibrio_virus	99.5	5.3e-192
SPM21331.1|1491689_1491974_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM21332.1|1491970_1493170_+	zona occludens toxin	NA	Q93AU9	Vibrio_virus	99.5	1.1e-237
SPM21333.1|1493533_1507171_-	RTX toxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
>prophage 4
LT992492	Vibrio cholerae strain 4295STDY6534248 genome assembly, chromosome: 1	3041945	2248935	2256128	3041945		Anguillid_herpesvirus(16.67%)	9	NA	NA
SPM21973.1|2248935_2249364_-	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
SPM21974.1|2249567_2250857_-	aminopeptidase B	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
SPM21975.1|2251076_2251271_-	Fe-S cluster assembly protein	NA	NA	NA	NA	NA
SPM21976.1|2251319_2251658_-	ferredoxin	NA	NA	NA	NA	NA
SPM21977.1|2251671_2253522_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
SPM21978.1|2253545_2254061_-	co-chaperone HscB	NA	NA	NA	NA	NA
SPM21979.1|2254109_2254433_-	iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
SPM21980.1|2254493_2254877_-	NifU-related protein	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
SPM21981.1|2254913_2256128_-	cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 5
LT992492	Vibrio cholerae strain 4295STDY6534248 genome assembly, chromosome: 1	3041945	2572054	2579278	3041945		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
SPM22245.1|2572054_2572942_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
SPM22246.1|2573212_2575798_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
SPM22247.1|2575890_2576898_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
SPM22248.1|2576971_2577907_-	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
SPM22249.1|2577906_2578533_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
SPM22250.1|2578525_2579278_-	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 1
LT992493	Vibrio cholerae strain 4295STDY6534248 genome assembly, chromosome: 2	1050699	193588	240153	1050699	transposase,tRNA,integrase,tail	Shigella_phage(23.08%)	58	185743:185758	214944:214959
185743:185758	attL	AAACGAAATTTTGGTG	NA	NA	NA	NA
SPM25633.1|193588_194740_+|integrase	integrase	integrase	A0A1P8DTG6	Proteus_phage	33.0	3.1e-56
SPM25634.1|194785_195766_+|transposase	ISVch5 transposase	transposase	Q38213	Escherichia_phage	82.2	3.0e-156
SPM25635.1|196059_197247_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25636.1|197767_198298_+	uropathogenic specific protein	NA	A0A2R3ZY74	Campylobacter_phage	40.7	3.9e-09
SPM25637.1|198297_198969_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25638.1|198970_199321_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25639.1|199589_201518_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.6	2.0e-127
SPM25640.1|201683_202073_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	2.6e-10
SPM25641.1|202176_202371_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
SPM25642.1|202412_202766_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
SPM25643.1|202847_203810_-	site-specific recombinase IntI4	NA	A0A1P8DJJ6	Virus_Rctr41k	44.7	1.0e-63
SPM25644.1|204149_204350_+	vco30	NA	NA	NA	NA	NA
SPM25645.1|204485_204812_+	Var1-like protein	NA	NA	NA	NA	NA
SPM25646.1|206046_206298_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
SPM25647.1|206450_206882_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25648.1|207032_207662_+	acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	37.8	5.8e-20
SPM25649.1|207817_208570_+	short chain dehydrogenase/reductase family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.6	3.7e-21
SPM25650.1|209231_209636_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25651.1|210844_211522_+	HNH endonuclease	NA	NA	NA	NA	NA
SPM25652.1|211683_212892_+	deoxyguanosinetriphosphate triphosphohydrolase-likeprotein	NA	NA	NA	NA	NA
SPM25653.1|213053_213758_+	HNH endonuclease	NA	NA	NA	NA	NA
SPM25654.1|213915_214254_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25655.1|214407_214725_-	Plasmid stabilization system protein	NA	NA	NA	NA	NA
SPM25656.1|214743_214986_-	prevent-host-death protein	NA	NA	NA	NA	NA
214944:214959	attR	CACCAAAATTTCGTTT	NA	NA	NA	NA
SPM25657.1|215229_215616_+	NUDIX hydrolase	NA	NA	NA	NA	NA
SPM25658.1|215794_216016_+	Predicted Fe-S protein	NA	NA	NA	NA	NA
SPM25659.1|216273_216810_+	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
SPM25660.1|216946_217462_+	outer membrane lipoprotein Blc	NA	A0A1W6JNX6	Morganella_phage	48.8	2.2e-46
SPM25661.1|217611_218109_-	acetyltransferase	NA	NA	NA	NA	NA
SPM25662.1|218105_218378_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SPM25663.1|219145_219592_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25664.1|219739_220009_-	plasmid stabilization system protein	NA	NA	NA	NA	NA
SPM25665.1|220001_220280_-	DNA-damage-inducible protein J	NA	NA	NA	NA	NA
SPM25666.1|221592_221979_+	glyoxalase family protein	NA	NA	NA	NA	NA
SPM25667.1|222173_222425_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
SPM25668.1|222638_222881_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25669.1|224232_224700_+	general stress protein 17O	NA	NA	NA	NA	NA
SPM25670.1|224827_225490_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25671.1|225927_226173_+	helix-turn-helix protein CopG family	NA	NA	NA	NA	NA
SPM25672.1|226268_227063_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25673.1|227736_228210_+	Uncharacterised protein family (UPF0157)	NA	NA	NA	NA	NA
SPM25674.1|228358_228985_+	Lysine exporter protein	NA	NA	NA	NA	NA
SPM25675.1|229125_229806_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25676.1|229985_230147_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25677.1|230896_231292_+	lipoprotein	NA	NA	NA	NA	NA
SPM25678.1|231419_231719_-	Plasmid stabilization element ParE, putative	NA	NA	NA	NA	NA
SPM25679.1|231715_231958_-	transcriptional regulator	NA	NA	NA	NA	NA
SPM25680.1|232186_232765_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25681.1|232938_233100_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25682.1|233302_233986_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25683.1|234199_234466_+|transposase	transposase IS3	transposase	NA	NA	NA	NA
SPM25684.1|234620_235220_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25685.1|235500_236436_+	Restriction endonuclease	NA	NA	NA	NA	NA
SPM25686.1|236653_237676_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM25687.1|237620_238223_+	Uncharacterised protein	NA	S5FXQ0	Shigella_phage	28.5	6.5e-05
SPM25688.1|238283_238850_-|tail	phage tail tape measure family protein	tail	A0A2I7S9D9	Vibrio_phage	61.0	1.6e-05
SPM25689.1|238975_239602_-|transposase	transposase OrfAB subunit B	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
SPM25690.1|239844_240153_-|transposase	ISVch4 transposase, OrfA	transposase	Q716C1	Shigella_phage	76.3	7.1e-32
