The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LT992486	Vibrio cholerae strain 4295STDY6534216 genome assembly, chromosome: 1	3041944	647262	653879	3041944		Staphylococcus_phage(66.67%)	7	NA	NA
SPM12641.1|647262_648396_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
SPM12642.1|648407_649658_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
SPM12643.1|649757_650207_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
SPM12644.1|650232_651336_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
SPM12645.1|651340_651994_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
SPM12646.1|652034_653144_+	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
SPM12647.1|653408_653879_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
LT992486	Vibrio cholerae strain 4295STDY6534216 genome assembly, chromosome: 1	3041944	1133964	1143229	3041944	integrase,transposase	Vibrio_phage(62.5%)	12	1131513:1131526	1148710:1148723
1131513:1131526	attL	CTTTGGGCTGTGGC	NA	NA	NA	NA
SPM13086.1|1133964_1134231_+	phage protein	NA	M1Q554	Vibrio_phage	33.8	1.4e-07
SPM13087.1|1134632_1135007_+	middle operon regulator-related protein	NA	NA	NA	NA	NA
SPM13088.1|1134993_1135314_+	transcriptional regulator	NA	NA	NA	NA	NA
SPM13089.1|1135332_1135911_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13090.1|1135971_1136343_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13091.1|1136391_1136751_+	Mu-like prophage FluMu protein gp41	NA	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
SPM13092.1|1136885_1137926_+	Mu-like prophage FluMu protein gp42	NA	A0A2I7S9D9	Vibrio_phage	72.5	2.6e-126
SPM13093.1|1137968_1138277_+|transposase	ISVch4 transposase, OrfA	transposase	Q716C1	Shigella_phage	76.3	7.1e-32
SPM13094.1|1138519_1139146_+|transposase	transposase OrfAB subunit B	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
SPM13095.1|1139359_1141312_+	putative helicase	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	26.7	3.1e-19
SPM13096.1|1141442_1141898_-|integrase	phage integrase	integrase	A0A1V0E8G8	Vibrio_phage	58.4	7.8e-43
SPM13097.1|1141993_1143229_-|integrase	Phage integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	1.2e-146
1148710:1148723	attR	CTTTGGGCTGTGGC	NA	NA	NA	NA
>prophage 3
LT992486	Vibrio cholerae strain 4295STDY6534216 genome assembly, chromosome: 1	3041944	1465163	1507171	3041944		Vibrio_phage(47.06%)	41	NA	NA
SPM13372.1|1465163_1465331_+	Uncharacterised protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
SPM13373.1|1465323_1465491_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13374.1|1466529_1467081_-	tlcR protein	NA	NA	NA	NA	NA
SPM13375.1|1467257_1468826_+	plasmid replication protein Cri	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
SPM13376.1|1468830_1469115_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13377.1|1469244_1469937_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13378.1|1470014_1470182_+	Uncharacterised protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
SPM13379.1|1470174_1470759_+	Phage protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
SPM13380.1|1471248_1471587_-	transcriptional repressor RstR	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
SPM13381.1|1471712_1472792_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM13382.1|1472772_1473144_+	RstB2 protein	NA	U5TMH5	Satellite_phage	99.2	5.7e-68
SPM13383.1|1473237_1473462_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
SPM13384.1|1473973_1474312_-	transcriptional repressor RstR	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
SPM13385.1|1474437_1475517_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM13386.1|1475497_1475878_+	RstB2 protein	NA	A0A0N9HE73	Vibrio_phage	100.0	1.4e-69
SPM13387.1|1475877_1476021_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13388.1|1476013_1476262_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
SPM13389.1|1476368_1477556_+	orfU	NA	A0A142I701	Vibrio_phage	100.0	1.4e-200
SPM13390.1|1477561_1477846_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM13391.1|1477842_1479042_+	zona occludens toxin	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
SPM13392.1|1479133_1479910_+	cholera enterotoxin, A subunit	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
SPM13393.1|1479906_1480281_+	cholera enterotoxin subunit B	NA	D1GID8	Vibrio_virus	100.0	5.9e-65
SPM13394.1|1481194_1481374_-	Uncharacterised protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
SPM13395.1|1481504_1482584_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM13396.1|1482564_1482942_+	RstB2 protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	6.8e-69
SPM13397.1|1482941_1483085_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13398.1|1483077_1483326_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
SPM13399.1|1483432_1484620_+	orfU	NA	Q8LTP3	Vibrio_virus	99.7	2.4e-192
SPM13400.1|1484625_1484910_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM13401.1|1484906_1486106_+	zona occludens toxin	NA	A0A023W604	Vibrio_virus	99.2	1.4e-237
SPM13402.1|1486197_1486974_+	cholera enterotoxin, A subunit	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
SPM13403.1|1486970_1487345_+	cholera enterotoxin subunit B	NA	D1GID0	Vibrio_virus	100.0	1.3e-64
SPM13404.1|1488258_1488438_-	Uncharacterised protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
SPM13405.1|1488568_1489648_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM13406.1|1489628_1490006_+	RstB2 protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	6.8e-69
SPM13407.1|1490005_1490149_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM13408.1|1490141_1490390_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
SPM13409.1|1490496_1491684_+	orfU	NA	Q8LTP3	Vibrio_virus	99.5	5.3e-192
SPM13410.1|1491689_1491974_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM13411.1|1491970_1493170_+	zona occludens toxin	NA	Q93AU9	Vibrio_virus	99.5	1.1e-237
SPM13412.1|1493533_1507171_-	RTX toxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
>prophage 4
LT992486	Vibrio cholerae strain 4295STDY6534216 genome assembly, chromosome: 1	3041944	2248935	2256128	3041944		Anguillid_herpesvirus(16.67%)	9	NA	NA
SPM14052.1|2248935_2249364_-	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
SPM14053.1|2249567_2250857_-	aminopeptidase B	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
SPM14054.1|2251076_2251271_-	Fe-S cluster assembly protein	NA	NA	NA	NA	NA
SPM14055.1|2251319_2251658_-	ferredoxin	NA	NA	NA	NA	NA
SPM14056.1|2251671_2253522_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
SPM14057.1|2253545_2254061_-	co-chaperone HscB	NA	NA	NA	NA	NA
SPM14058.1|2254109_2254433_-	iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
SPM14059.1|2254493_2254877_-	NifU-related protein	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
SPM14060.1|2254913_2256128_-	cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 5
LT992486	Vibrio cholerae strain 4295STDY6534216 genome assembly, chromosome: 1	3041944	2572054	2579278	3041944		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
SPM14324.1|2572054_2572942_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
SPM14325.1|2573212_2575798_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
SPM14326.1|2575890_2576898_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
SPM14327.1|2576971_2577907_-	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
SPM14328.1|2577906_2578533_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
SPM14329.1|2578525_2579278_-	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 1
LT992487	Vibrio cholerae strain 4295STDY6534216 genome assembly, chromosome: 2	1050697	950403	996968	1050697	tail,transposase,tRNA,integrase	Shigella_phage(23.08%)	58	975598:975613	1004799:1004814
SPM23966.1|950403_950712_+|transposase	ISVch4 transposase, OrfA	transposase	Q716C1	Shigella_phage	76.3	7.1e-32
SPM23968.1|950954_951581_+|transposase	transposase OrfAB subunit B	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
SPM23970.1|951706_952273_+|tail	phage tail tape measure family protein	tail	A0A2I7S9D9	Vibrio_phage	61.0	1.6e-05
SPM23972.1|952333_952936_-	Uncharacterised protein	NA	S5FXQ0	Shigella_phage	28.5	6.5e-05
SPM23974.1|952880_953903_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23976.1|954120_955056_-	Restriction endonuclease	NA	NA	NA	NA	NA
SPM23977.1|955336_955936_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23979.1|956090_956357_-|transposase	transposase IS3	transposase	NA	NA	NA	NA
SPM23981.1|956570_957254_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23983.1|957456_957618_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23985.1|957791_958370_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23987.1|958598_958841_+	transcriptional regulator	NA	NA	NA	NA	NA
SPM23988.1|958837_959137_+	Plasmid stabilization element ParE, putative	NA	NA	NA	NA	NA
SPM23990.1|959264_959660_-	lipoprotein	NA	NA	NA	NA	NA
SPM23992.1|960409_960571_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23994.1|960750_961431_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23997.1|961571_962198_-	Lysine exporter protein	NA	NA	NA	NA	NA
SPM23999.1|962346_962820_-	Uncharacterised protein family (UPF0157)	NA	NA	NA	NA	NA
SPM24001.1|963493_964288_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24003.1|964383_964629_-	helix-turn-helix protein CopG family	NA	NA	NA	NA	NA
SPM24005.1|965066_965729_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24007.1|965856_966324_-	general stress protein 17O	NA	NA	NA	NA	NA
SPM24009.1|967675_967918_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24011.1|968131_968383_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
SPM24013.1|968577_968964_-	glyoxalase family protein	NA	NA	NA	NA	NA
SPM24015.1|970276_970555_+	DNA-damage-inducible protein J	NA	NA	NA	NA	NA
SPM24017.1|970547_970817_+	plasmid stabilization system protein	NA	NA	NA	NA	NA
SPM24019.1|970964_971411_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24021.1|972178_972451_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SPM24023.1|972447_972945_+	acetyltransferase	NA	NA	NA	NA	NA
SPM24025.1|973094_973610_-	outer membrane lipoprotein Blc	NA	A0A1W6JNX6	Morganella_phage	48.8	2.2e-46
SPM24027.1|973746_974283_-	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
SPM24029.1|974540_974762_-	Predicted Fe-S protein	NA	NA	NA	NA	NA
SPM24031.1|974940_975327_-	NUDIX hydrolase	NA	NA	NA	NA	NA
SPM24033.1|975570_975813_+	prevent-host-death protein	NA	NA	NA	NA	NA
975598:975613	attL	AAACGAAATTTTGGTG	NA	NA	NA	NA
SPM24035.1|975831_976149_+	Plasmid stabilization system protein	NA	NA	NA	NA	NA
SPM24037.1|976302_976641_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24039.1|976798_977503_-	HNH endonuclease	NA	NA	NA	NA	NA
SPM24041.1|977664_978873_-	deoxyguanosinetriphosphate triphosphohydrolase-likeprotein	NA	NA	NA	NA	NA
SPM24043.1|979034_979712_-	HNH endonuclease	NA	NA	NA	NA	NA
SPM24045.1|980920_981325_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24047.1|981986_982739_-	short chain dehydrogenase/reductase family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.6	3.7e-21
SPM24049.1|982894_983524_-	acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	37.8	5.8e-20
SPM24051.1|983674_984106_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24053.1|984258_984510_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
SPM24054.1|985744_986071_-	Var1-like protein	NA	NA	NA	NA	NA
SPM24056.1|986206_986407_-	vco30	NA	NA	NA	NA	NA
SPM24058.1|986746_987709_+	site-specific recombinase IntI4	NA	A0A1P8DJJ6	Virus_Rctr41k	44.7	1.0e-63
SPM24060.1|987790_988144_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
SPM24062.1|988185_988380_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
SPM24065.1|988483_988873_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	2.6e-10
SPM24067.1|989038_990967_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.6	2.0e-127
SPM24069.1|991235_991586_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24071.1|991587_992259_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24073.1|992258_992789_-	uropathogenic specific protein	NA	A0A2R3ZY74	Campylobacter_phage	40.7	3.9e-09
SPM24075.1|993309_994497_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM24077.1|994790_995771_-|transposase	ISVch5 transposase	transposase	Q38213	Escherichia_phage	82.2	3.0e-156
SPM24079.1|995816_996968_-|integrase	integrase	integrase	A0A1P8DTG6	Proteus_phage	33.0	3.1e-56
1004799:1004814	attR	CACCAAAATTTCGTTT	NA	NA	NA	NA
