The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LT992488	Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 1	3041946	647263	653880	3041946		Staphylococcus_phage(66.67%)	7	NA	NA
SPM15288.1|647263_648397_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
SPM15289.1|648408_649659_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
SPM15290.1|649758_650208_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
SPM15291.1|650233_651337_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
SPM15292.1|651341_651995_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
SPM15293.1|652035_653145_+	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
SPM15294.1|653409_653880_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
LT992488	Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 1	3041946	1133965	1143230	3041946	transposase,integrase	Vibrio_phage(62.5%)	12	1131514:1131527	1148711:1148724
1131514:1131527	attL	CTTTGGGCTGTGGC	NA	NA	NA	NA
SPM15733.1|1133965_1134232_+	phage protein	NA	M1Q554	Vibrio_phage	33.8	1.4e-07
SPM15734.1|1134633_1135008_+	middle operon regulator-related protein	NA	NA	NA	NA	NA
SPM15735.1|1134994_1135315_+	transcriptional regulator	NA	NA	NA	NA	NA
SPM15736.1|1135333_1135912_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM15737.1|1135972_1136344_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM15738.1|1136392_1136752_+	Mu-like prophage FluMu protein gp41	NA	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
SPM15739.1|1136886_1137927_+	Mu-like prophage FluMu protein gp42	NA	A0A2I7S9D9	Vibrio_phage	72.5	2.6e-126
SPM15740.1|1137969_1138278_+|transposase	ISVch4 transposase, OrfA	transposase	Q716C1	Shigella_phage	76.3	7.1e-32
SPM15741.1|1138520_1139147_+|transposase	transposase OrfAB subunit B	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
SPM15742.1|1139360_1141313_+	putative helicase	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	26.7	3.1e-19
SPM15743.1|1141443_1141899_-|integrase	phage integrase	integrase	A0A1V0E8G8	Vibrio_phage	58.4	7.8e-43
SPM15744.1|1141994_1143230_-|integrase	Phage integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	1.2e-146
1148711:1148724	attR	CTTTGGGCTGTGGC	NA	NA	NA	NA
>prophage 3
LT992488	Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 1	3041946	1465164	1507172	3041946		Vibrio_phage(47.06%)	41	NA	NA
SPM16019.1|1465164_1465332_+	Uncharacterised protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
SPM16020.1|1465324_1465492_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM16021.1|1466530_1467082_-	tlcR protein	NA	NA	NA	NA	NA
SPM16022.1|1467258_1468827_+	plasmid replication protein Cri	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
SPM16023.1|1468831_1469116_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM16024.1|1469245_1469938_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM16025.1|1470015_1470183_+	Uncharacterised protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
SPM16026.1|1470175_1470760_+	Phage protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
SPM16027.1|1471249_1471588_-	transcriptional repressor RstR	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
SPM16028.1|1471713_1472793_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM16029.1|1472773_1473145_+	RstB2 protein	NA	U5TMH5	Satellite_phage	99.2	5.7e-68
SPM16030.1|1473238_1473463_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
SPM16031.1|1473974_1474313_-	transcriptional repressor RstR	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
SPM16032.1|1474438_1475518_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM16033.1|1475498_1475879_+	RstB2 protein	NA	A0A0N9HE73	Vibrio_phage	100.0	1.4e-69
SPM16034.1|1475878_1476022_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM16035.1|1476014_1476263_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
SPM16036.1|1476369_1477557_+	orfU	NA	A0A142I701	Vibrio_phage	100.0	1.4e-200
SPM16037.1|1477562_1477847_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM16038.1|1477843_1479043_+	zona occludens toxin	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
SPM16039.1|1479134_1479911_+	cholera enterotoxin, A subunit	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
SPM16040.1|1479907_1480282_+	cholera enterotoxin subunit B	NA	D1GID8	Vibrio_virus	100.0	5.9e-65
SPM16041.1|1481195_1481375_-	Uncharacterised protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
SPM16042.1|1481505_1482585_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM16043.1|1482565_1482943_+	RstB2 protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	6.8e-69
SPM16044.1|1482942_1483086_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM16045.1|1483078_1483327_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
SPM16046.1|1483433_1484621_+	orfU	NA	Q8LTP3	Vibrio_virus	99.7	2.4e-192
SPM16047.1|1484626_1484911_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM16048.1|1484907_1486107_+	zona occludens toxin	NA	A0A023W604	Vibrio_virus	99.2	1.4e-237
SPM16049.1|1486198_1486975_+	cholera enterotoxin, A subunit	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
SPM16050.1|1486971_1487346_+	cholera enterotoxin subunit B	NA	D1GID0	Vibrio_virus	100.0	1.3e-64
SPM16051.1|1488259_1488439_-	Uncharacterised protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
SPM16052.1|1488569_1489649_+	RstA1 protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
SPM16053.1|1489629_1490007_+	RstB2 protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	6.8e-69
SPM16054.1|1490006_1490150_+	Uncharacterised protein	NA	NA	NA	NA	NA
SPM16055.1|1490142_1490391_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
SPM16056.1|1490497_1491685_+	orfU	NA	Q8LTP3	Vibrio_virus	99.5	5.3e-192
SPM16057.1|1491690_1491975_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	4.0e-45
SPM16058.1|1491971_1493171_+	zona occludens toxin	NA	Q93AU9	Vibrio_virus	99.5	1.1e-237
SPM16059.1|1493534_1507172_-	RTX toxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
>prophage 4
LT992488	Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 1	3041946	2248936	2256129	3041946		Anguillid_herpesvirus(16.67%)	9	NA	NA
SPM16699.1|2248936_2249365_-	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
SPM16700.1|2249568_2250858_-	aminopeptidase B	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
SPM16701.1|2251077_2251272_-	Fe-S cluster assembly protein	NA	NA	NA	NA	NA
SPM16702.1|2251320_2251659_-	ferredoxin	NA	NA	NA	NA	NA
SPM16703.1|2251672_2253523_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
SPM16704.1|2253546_2254062_-	co-chaperone HscB	NA	NA	NA	NA	NA
SPM16705.1|2254110_2254434_-	iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
SPM16706.1|2254494_2254878_-	NifU-related protein	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
SPM16707.1|2254914_2256129_-	cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 5
LT992488	Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 1	3041946	2572055	2579279	3041946		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
SPM16971.1|2572055_2572943_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
SPM16972.1|2573213_2575799_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
SPM16973.1|2575891_2576899_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
SPM16974.1|2576972_2577908_-	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
SPM16975.1|2577907_2578534_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
SPM16976.1|2578526_2579279_-	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 1
LT992489	Vibrio cholerae strain 4295STDY6534232 genome assembly, chromosome: 2	1050699	432203	478768	1050699	transposase,tRNA,integrase,tail	Shigella_phage(23.08%)	58	457398:457413	486599:486614
SPM23775.1|432203_432512_+|transposase	ISVch4 transposase, OrfA	transposase	Q716C1	Shigella_phage	76.3	7.1e-32
SPM23777.1|432754_433381_+|transposase	transposase OrfAB subunit B	transposase	Q716C2	Shigella_phage	72.9	1.1e-92
SPM23779.1|433506_434073_+|tail	phage tail tape measure family protein	tail	A0A2I7S9D9	Vibrio_phage	61.0	1.6e-05
SPM23781.1|434133_434736_-	Uncharacterised protein	NA	S5FXQ0	Shigella_phage	28.5	6.5e-05
SPM23783.1|434680_435703_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23785.1|435920_436856_-	Restriction endonuclease	NA	NA	NA	NA	NA
SPM23787.1|437136_437736_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23789.1|437890_438157_-|transposase	transposase IS3	transposase	NA	NA	NA	NA
SPM23791.1|438370_439054_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23793.1|439256_439418_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23795.1|439591_440170_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23797.1|440398_440641_+	transcriptional regulator	NA	NA	NA	NA	NA
SPM23799.1|440637_440937_+	Plasmid stabilization element ParE, putative	NA	NA	NA	NA	NA
SPM23802.1|441064_441460_-	lipoprotein	NA	NA	NA	NA	NA
SPM23805.1|442209_442371_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23807.1|442550_443231_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23810.1|443371_443998_-	Lysine exporter protein	NA	NA	NA	NA	NA
SPM23812.1|444146_444620_-	Uncharacterised protein family (UPF0157)	NA	NA	NA	NA	NA
SPM23814.1|445293_446088_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23816.1|446183_446429_-	helix-turn-helix protein CopG family	NA	NA	NA	NA	NA
SPM23818.1|446866_447529_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23820.1|447656_448124_-	general stress protein 17O	NA	NA	NA	NA	NA
SPM23823.1|449475_449718_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23825.1|449931_450183_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
SPM23827.1|450377_450764_-	glyoxalase family protein	NA	NA	NA	NA	NA
SPM23829.1|452076_452355_+	DNA-damage-inducible protein J	NA	NA	NA	NA	NA
SPM23831.1|452347_452617_+	plasmid stabilization system protein	NA	NA	NA	NA	NA
SPM23833.1|452764_453211_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23835.1|453978_454251_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SPM23837.1|454247_454745_+	acetyltransferase	NA	NA	NA	NA	NA
SPM23839.1|454894_455410_-	outer membrane lipoprotein Blc	NA	A0A1W6JNX6	Morganella_phage	48.8	2.2e-46
SPM23841.1|455546_456083_-	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
SPM23843.1|456340_456562_-	Predicted Fe-S protein	NA	NA	NA	NA	NA
SPM23845.1|456740_457127_-	NUDIX hydrolase	NA	NA	NA	NA	NA
SPM23847.1|457370_457613_+	prevent-host-death protein	NA	NA	NA	NA	NA
457398:457413	attL	AAACGAAATTTTGGTG	NA	NA	NA	NA
SPM23849.1|457631_457949_+	Plasmid stabilization system protein	NA	NA	NA	NA	NA
SPM23851.1|458102_458441_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23853.1|458598_459303_-	HNH endonuclease	NA	NA	NA	NA	NA
SPM23855.1|459464_460673_-	deoxyguanosinetriphosphate triphosphohydrolase-likeprotein	NA	NA	NA	NA	NA
SPM23857.1|460834_461512_-	HNH endonuclease	NA	NA	NA	NA	NA
SPM23859.1|462720_463125_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23861.1|463786_464539_-	short chain dehydrogenase/reductase family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.6	3.7e-21
SPM23863.1|464694_465324_-	acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	37.8	5.8e-20
SPM23865.1|465474_465906_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23867.1|466058_466310_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
SPM23869.1|467544_467871_-	Var1-like protein	NA	NA	NA	NA	NA
SPM23871.1|468006_468207_-	vco30	NA	NA	NA	NA	NA
SPM23873.1|468546_469509_+	site-specific recombinase IntI4	NA	A0A1P8DJJ6	Virus_Rctr41k	44.7	1.0e-63
SPM23875.1|469590_469944_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
SPM23877.1|469985_470180_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
SPM23879.1|470283_470673_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	2.6e-10
SPM23881.1|470838_472767_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.6	2.0e-127
SPM23883.1|473035_473386_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23885.1|473387_474059_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23887.1|474058_474589_-	uropathogenic specific protein	NA	A0A2R3ZY74	Campylobacter_phage	40.7	3.9e-09
SPM23889.1|475109_476297_-	Uncharacterised protein	NA	NA	NA	NA	NA
SPM23891.1|476590_477571_-|transposase	ISVch5 transposase	transposase	Q38213	Escherichia_phage	82.2	3.0e-156
SPM23893.1|477616_478768_-|integrase	integrase	integrase	A0A1P8DTG6	Proteus_phage	33.0	3.1e-56
486599:486614	attR	CACCAAAATTTCGTTT	NA	NA	NA	NA
