The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	1835131	1879358	8156021	transposase	Enterobacteria_phage(18.18%)	57	NA	NA
SPP93079.1|1835131_1836589_+|transposase	transposase	transposase	Q9JMP3	Wolbachia_phage	35.2	3.5e-68
SPP93080.1|1836605_1836752_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93081.1|1837022_1837607_-	protein of unknown function	NA	A0A0N9STL0	Staphylococcus_phage	51.5	2.8e-21
SPP93082.1|1838006_1839041_-	Poly(3-hydroxybutyrate) synthase subunit	NA	NA	NA	NA	NA
SPP93083.1|1839731_1840190_-	Transcriptional regulator, LuxR family (fragment)	NA	NA	NA	NA	NA
SPP93084.1|1840907_1841405_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93085.1|1841539_1841908_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93086.1|1841904_1842093_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93087.1|1842447_1843785_-	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP93088.1|1843960_1845274_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93089.1|1845374_1845875_-	exported protein of unknown function	NA	NA	NA	NA	NA
SPP93090.1|1845937_1846123_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93091.1|1846482_1846644_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93092.1|1846679_1846952_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93093.1|1847278_1847656_+	exported protein of unknown function	NA	NA	NA	NA	NA
SPP93094.1|1847754_1848180_+	exported protein of unknown function	NA	NA	NA	NA	NA
SPP93095.1|1848181_1848898_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93096.1|1848952_1849114_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93097.1|1849179_1849404_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93098.1|1849501_1849738_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93099.1|1849789_1850329_-	Transporter (fragment)	NA	NA	NA	NA	NA
SPP93100.1|1850312_1850492_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93101.1|1850656_1851154_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93102.1|1851185_1851425_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93105.1|1853104_1853344_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93106.1|1853451_1854357_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93107.1|1854738_1855167_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP93108.1|1855163_1855517_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93109.1|1855549_1855978_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP93112.1|1857076_1857379_-	Insertion element ISR1 uncharacterized 10 kDa protein A3	NA	S5WIS5	Leptospira_phage	58.5	7.3e-05
SPP93113.1|1857760_1858912_+|transposase	transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.8	1.9e-85
SPP93114.1|1859012_1859723_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93115.1|1859809_1860025_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93116.1|1860034_1860823_+	Regulatory protein LuxR (modular protein)	NA	NA	NA	NA	NA
SPP93117.1|1861766_1863149_+	Secretion protein HlyD	NA	NA	NA	NA	NA
SPP93118.1|1863159_1863852_+	ABC transporter ATPase component	NA	G9BWD6	Planktothrix_phage	39.3	7.2e-32
SPP93119.1|1863848_1865072_+	Export ABC transporter permease	NA	NA	NA	NA	NA
SPP93120.1|1865405_1865921_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93121.1|1865874_1866213_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93122.1|1866403_1867735_+	Retron-type reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	31.4	3.8e-29
SPP93123.1|1867703_1867907_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93124.1|1868029_1868416_+	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP93125.1|1868557_1868800_-	PRC-barrel	NA	NA	NA	NA	NA
SPP93126.1|1869207_1869837_-	Site-specific recombinase XerD	NA	A0A0A8WE94	Clostridium_phage	29.0	1.6e-06
SPP93127.1|1869851_1870151_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93128.1|1870119_1871004_-	Retron-type reverse transcriptase (fragment)	NA	NA	NA	NA	NA
SPP93129.1|1871135_1872509_+	Putative Integrase	NA	U5N3F9	Enterobacteria_phage	34.4	4.8e-35
SPP93130.1|1872390_1873254_+	Putative IstB domain protein ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.1	7.8e-52
SPP93131.1|1873090_1873738_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93132.1|1873928_1874357_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93133.1|1874353_1875277_+	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP93134.1|1875427_1876309_+	Transcriptional regulator, HxlR family (modular protein)	NA	NA	NA	NA	NA
SPP93135.1|1876442_1876889_+	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP93136.1|1876878_1877226_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93137.1|1877200_1877662_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93138.1|1877825_1878368_+|transposase	transposase (fragment)	transposase	K4I413	Acidithiobacillus_phage	47.8	3.5e-34
SPP93139.1|1878440_1879358_+|transposase	transposase (fragment)	transposase	K4I413	Acidithiobacillus_phage	49.2	5.7e-77
>prophage 2
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	1905545	1922778	8156021	transposase	uncultured_virus(40.0%)	32	NA	NA
SPP93165.1|1905545_1905995_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP93166.1|1905991_1906342_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93167.1|1906396_1907407_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP93168.1|1907427_1908024_+	conserved protein of unknown function	NA	A0A218MNE7	uncultured_virus	38.9	2.0e-30
SPP93169.1|1908024_1908462_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93170.1|1908837_1909152_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93171.1|1909195_1909588_+|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	37.7	3.7e-17
SPP93172.1|1909617_1909956_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP93173.1|1910129_1910651_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93174.1|1910820_1911036_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93175.1|1911206_1911443_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93176.1|1911641_1911842_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93177.1|1911876_1912107_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93178.1|1912114_1912492_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93179.1|1912733_1912925_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93180.1|1912988_1913246_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93181.1|1913996_1914209_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93182.1|1914384_1914714_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93183.1|1914790_1914952_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93184.1|1915287_1915488_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93185.1|1915660_1915915_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93186.1|1916440_1916842_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP93187.1|1916838_1917186_+	conserved protein of unknown function	NA	A0A0P0ZBY2	Stx2-converting_phage	51.9	3.7e-29
SPP93188.1|1917231_1918893_+	conserved protein of unknown function	NA	A0A218MNE7	uncultured_virus	34.0	2.5e-62
SPP93189.1|1918924_1919263_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93190.1|1919437_1919740_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93191.1|1919790_1919964_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93192.1|1919960_1920140_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93193.1|1920151_1920604_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93194.1|1920966_1921227_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93195.1|1921263_1921413_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93196.1|1921533_1922778_+|transposase	transposase	transposase	A0A2L1IVA1	Escherichia_phage	33.3	1.7e-31
>prophage 3
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	1934100	1977225	8156021	transposase	Enterobacteria_phage(31.25%)	50	NA	NA
SPP93210.1|1934100_1934886_+|transposase	transposase (fragment)	transposase	A0A2L1IVA1	Escherichia_phage	34.2	3.7e-24
SPP93211.1|1935027_1936287_+	Integrase catalytic region	NA	U5N3F9	Enterobacteria_phage	34.9	6.3e-42
SPP93212.1|1936283_1937147_+	putative Insertion sequence IS21 ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.1	3.5e-52
SPP93213.1|1937214_1937748_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP93214.1|1937747_1938605_+	putative Insertion sequence IS21 ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	47.7	7.3e-58
SPP93215.1|1939127_1939304_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93216.1|1939683_1939896_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93217.1|1939922_1941269_-|transposase	transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.1	1.6e-43
SPP93218.1|1941436_1942294_-	protein of unknown function	NA	A0A1X9SH33	Bradyrhizobium_phage	62.9	2.9e-38
SPP93219.1|1942484_1943984_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP93220.1|1944113_1945388_+	membrane protein of unknown function	NA	NA	NA	NA	NA
SPP93221.1|1945582_1945798_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93222.1|1945898_1946102_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93223.1|1946080_1946296_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93224.1|1946532_1948491_-	putative aminoacid/polyamine transporter, permease protein	NA	NA	NA	NA	NA
SPP93225.1|1948447_1948624_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93226.1|1948687_1948804_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93229.1|1949837_1950140_-	Insertion element ISR1 uncharacterized 10 kDa protein A3	NA	S5WIS5	Leptospira_phage	58.5	7.3e-05
SPP93230.1|1950233_1950449_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93231.1|1950589_1950865_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93232.1|1950909_1951725_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93233.1|1950966_1951710_-	putative insertion sequence ATP-binding protein y4pL	NA	K4HZD4	Acidithiobacillus_phage	49.6	3.2e-62
SPP93234.1|1951721_1952636_-|transposase	transposase (fragment)	transposase	K4I413	Acidithiobacillus_phage	49.0	1.7e-76
SPP93235.1|1952711_1953254_-|transposase	transposase (fragment)	transposase	K4I413	Acidithiobacillus_phage	47.8	3.5e-34
SPP93236.1|1953594_1953954_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93237.1|1953925_1954261_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93238.1|1954451_1955783_+	Retron-type reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	31.4	3.8e-29
SPP93239.1|1955948_1956353_-	Response regulator	NA	NA	NA	NA	NA
SPP93240.1|1956345_1958529_-	Signal transduction histidine kinase	NA	NA	NA	NA	NA
SPP93241.1|1958827_1959022_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93242.1|1959105_1959279_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93243.1|1959327_1959750_-	protein of unknown function	NA	A0A1X9SH33	Bradyrhizobium_phage	61.6	2.1e-26
SPP93244.1|1959762_1960221_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93245.1|1960499_1961357_-	putative Insertion sequence IS21 ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	47.7	7.3e-58
SPP93246.1|1961356_1962667_-|transposase	transposase	transposase	U5N3F9	Enterobacteria_phage	33.6	2.8e-40
SPP93247.1|1962753_1962978_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93248.1|1963060_1966405_-	putative adenylate cyclase	NA	NA	NA	NA	NA
SPP93249.1|1966649_1966880_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93250.1|1966830_1967274_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93251.1|1967270_1967912_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93252.1|1968120_1968711_+	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP93253.1|1968770_1968968_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93254.1|1969062_1969392_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93255.1|1969887_1971018_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPP93256.1|1971155_1972058_+	Alkanesulfonate ABC transporter permease protein	NA	NA	NA	NA	NA
SPP93257.1|1972051_1972840_+	conserved protein of unknown function	NA	G3M9Y6	Bacillus_virus	36.1	8.5e-29
SPP93258.1|1972992_1973793_+	Methyltransferase, S-adenosyl-L-methionine (SAM)-MTase	NA	NA	NA	NA	NA
SPP93259.1|1974023_1974440_-	Cyclase (fragment)	NA	NA	NA	NA	NA
SPP93260.1|1974750_1976700_+	Two-component hybrid sensor and regulator	NA	NA	NA	NA	NA
SPP93261.1|1976826_1977225_-|transposase	transposase (fragment)	transposase	A0A1V0SDF8	Indivirus	26.2	5.4e-08
>prophage 4
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	2651073	2659842	8156021	transposase	Enterobacteria_phage(57.14%)	10	NA	NA
SPP93925.1|2651073_2651640_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	34.9	2.2e-23
SPP93926.1|2651811_2652735_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP93927.1|2652864_2653170_-|transposase	transposase (fragment)	transposase	A0A0K2CZ57	Paenibacillus_phage	40.3	2.0e-10
SPP93928.1|2653574_2654372_-	putative Insertion sequence IS21 ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	48.8	6.3e-64
SPP93929.1|2654371_2655394_-|transposase	transposase (fragment)	transposase	A0A059NT83	Lactococcus_phage	31.0	7.9e-27
SPP93930.1|2655558_2656422_-	putative Insertion sequence IS21 ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.1	3.5e-52
SPP93931.1|2656418_2657678_-	Integrase catalytic region	NA	U5N3F9	Enterobacteria_phage	34.9	4.8e-42
SPP93932.1|2657650_2657953_-	protein of unknown function	NA	NA	NA	NA	NA
SPP93933.1|2658073_2658352_+	protein of unknown function	NA	NA	NA	NA	NA
SPP93934.1|2658498_2659842_-	Nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	35.0	2.4e-55
>prophage 5
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	2874483	2917788	8156021	integrase,transposase	Leptospira_phage(20.0%)	46	2889840:2889856	2917337:2917353
SPP94142.1|2874483_2874729_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP94143.1|2874743_2875070_+	protein of unknown function	NA	NA	NA	NA	NA
SPP94144.1|2875253_2875463_+	protein of unknown function	NA	NA	NA	NA	NA
SPP94145.1|2875519_2877421_+	conserved membrane protein of unknown function	NA	A0A1V0SAI8	Catovirus	28.7	2.4e-21
SPP94146.1|2877723_2878026_-	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP94147.1|2878228_2879593_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94148.1|2879637_2881356_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94149.1|2881457_2882888_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94150.1|2883243_2883864_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94151.1|2883860_2884376_+	putative Transcriptional antitermination protein	NA	NA	NA	NA	NA
SPP94152.1|2884654_2885305_+	Pcmt-protein-L-isoaspartate o-methyltransferase (fragment)	NA	NA	NA	NA	NA
SPP94153.1|2885503_2886217_+	putative SAM-dependent methyltransferase	NA	A0A1V0SIL0	Klosneuvirus	28.6	1.8e-06
SPP94154.1|2886318_2886528_+	protein of unknown function	NA	NA	NA	NA	NA
SPP94155.1|2886521_2887619_+	putative Teichoic-acid-transporting ATPase	NA	NA	NA	NA	NA
SPP94156.1|2887611_2888406_+	putative ABC-2 type transporter	NA	NA	NA	NA	NA
SPP94157.1|2888536_2889709_-	conserved protein of unknown function	NA	NA	NA	NA	NA
2889840:2889856	attL	TCGGCGGCGGGCGCAAA	NA	NA	NA	NA
SPP94158.1|2889873_2890749_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	58.2	2.4e-88
SPP94159.1|2890765_2891725_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94160.1|2891748_2892660_+	protein of unknown function	NA	NA	NA	NA	NA
SPP94161.1|2892684_2893830_+	Daunorubicin biosynthesis sensory transduction protein DnrJ	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	30.7	8.8e-35
SPP94162.1|2893832_2894249_+	protein of unknown function	NA	NA	NA	NA	NA
SPP94163.1|2894320_2895319_+	Type 11 methyltransferase	NA	NA	NA	NA	NA
SPP94164.1|2895378_2896506_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94165.1|2896921_2897947_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94166.1|2897973_2898777_-	protein of unknown function	NA	NA	NA	NA	NA
SPP94167.1|2898874_2899987_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.7	2.0e-79
SPP94168.1|2900213_2901452_-	Glycosyl transferase	NA	NA	NA	NA	NA
SPP94169.1|2902446_2903406_+	bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	52.3	4.4e-88
SPP94170.1|2903625_2904087_+	protein of unknown function	NA	NA	NA	NA	NA
SPP94171.1|2904577_2905648_+	GDP-D-mannose dehydratase, NAD(P)-binding	NA	A0A0E3I0Y8	Synechococcus_phage	65.4	7.5e-129
SPP94172.1|2905628_2906585_+	bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	54.0	2.8e-90
SPP94173.1|2906618_2906777_-	protein of unknown function	NA	NA	NA	NA	NA
SPP94174.1|2906817_2908002_-	ERF superfamily protein	NA	A0A077KCB6	Edwardsiella_phage	40.1	3.1e-14
SPP94175.1|2907985_2908417_-	protein of unknown function	NA	NA	NA	NA	NA
SPP94176.1|2908474_2909290_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94177.1|2908531_2909275_-	putative insertion sequence ATP-binding protein y4pL	NA	K4HZD4	Acidithiobacillus_phage	49.6	3.2e-62
SPP94178.1|2909286_2910819_-|transposase	transposase	transposase	K4I413	Acidithiobacillus_phage	48.8	2.2e-126
SPP94179.1|2911372_2912566_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP94180.1|2912575_2913436_-|integrase	putative integrase/recombinase y4qK	integrase	S5W9T9	Leptospira_phage	35.1	2.8e-33
SPP94181.1|2913501_2913801_-	protein of unknown function	NA	NA	NA	NA	NA
SPP94182.1|2914113_2915040_-	conserved protein of unknown function	NA	S5WIU1	Leptospira_phage	41.2	1.8e-46
SPP94183.1|2915033_2915336_-	Insertion element ISR1 uncharacterized 10 kDa protein A3	NA	S5WIS5	Leptospira_phage	58.5	7.3e-05
SPP94184.1|2915384_2915558_-	protein of unknown function	NA	NA	NA	NA	NA
SPP94185.1|2915601_2916915_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP94186.1|2917027_2917420_+|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	37.7	3.7e-17
2917337:2917353	attR	TCGGCGGCGGGCGCAAA	NA	NA	NA	NA
SPP94187.1|2917449_2917788_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
>prophage 6
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	3972010	3982028	8156021	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
SPP95297.1|3972010_3973039_+	Glycosyl hydrolase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.2	5.9e-22
SPP95298.1|3973035_3973875_+	conserved protein of unknown function	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.3	9.7e-31
SPP95299.1|3973896_3974661_+	conserved protein of unknown function	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.1	3.5e-43
SPP95300.1|3974826_3975060_+	Sec-independent protein translocase protein TatA	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
SPP95301.1|3975149_3975644_+	Sec-independent protein translocase protein TatB	NA	NA	NA	NA	NA
SPP95302.1|3975640_3976453_+	Sec-independent protein translocase protein TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.8	1.1e-55
SPP95303.1|3976652_3977984_+|tRNA	seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.2	4.5e-99
SPP95304.1|3978045_3978408_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP95305.1|3978516_3979284_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.0	9.1e-36
SPP95306.1|3979286_3979676_-	Two-component response regulator	NA	NA	NA	NA	NA
SPP95307.1|3979843_3980539_+	L-isoaspartate protein carboxylmethyltransferase type II	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	1.5e-29
SPP95308.1|3980648_3982028_+	conserved protein of unknown function	NA	Q8SBN9	Clostridium_phage	41.8	3.1e-18
>prophage 7
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	5379192	5389819	8156021		Escherichia_phage(42.86%)	8	NA	NA
SPP96703.1|5379192_5382372_-	Cation/multidrug efflux pump	NA	S5VTK5	Leptospira_phage	22.3	2.2e-67
SPP96704.1|5382541_5384233_-	Methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.8	2.4e-12
SPP96705.1|5384401_5385676_-	conserved hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	41.4	5.0e-71
SPP96706.1|5385672_5386455_-	conserved hypothetical protein	NA	NA	NA	NA	NA
SPP96707.1|5386470_5387388_-	putative dehydrogenase, with NAD(P)-binding Rossmann-fold domain	NA	A0A077SLF7	Escherichia_phage	49.0	6.3e-68
SPP96708.1|5387490_5388165_+	putative class II aldolase	NA	A0A077SK32	Escherichia_phage	49.3	7.0e-48
SPP96709.1|5388399_5389104_-	High-affinity branched-chain amino acid transport ATP-binding protein BraG	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	2.6e-13
SPP96710.1|5389087_5389819_-	Amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.0e-12
>prophage 8
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	6624090	6733579	8156021	protease,transposase	Indivirus(14.29%)	101	NA	NA
SPP97971.1|6624090_6624474_+|transposase	Conserved hypothetical protein; putative transposase	transposase	NA	NA	NA	NA
SPP97972.1|6624436_6625006_+|transposase	putative transposase	transposase	A0A1V0SCG6	Indivirus	27.6	4.1e-09
SPP97973.1|6625483_6625846_-	protein of unknown function	NA	NA	NA	NA	NA
SPP97974.1|6625842_6628095_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97975.1|6628651_6630883_-	Putative Type III secretion system effector, E3 ubiquitin ligase YopM/NopM family	NA	NA	NA	NA	NA
SPP97976.1|6631133_6632960_+	putative Type III secretion system effector, E3 ubiquitin ligase YopM/NopM family	NA	NA	NA	NA	NA
SPP97977.1|6634710_6635055_+	protein of unknown function	NA	NA	NA	NA	NA
SPP97978.1|6635448_6635682_-	protein of unknown function	NA	NA	NA	NA	NA
SPP97979.1|6636221_6636839_+	Putative Heat shock protein DnaJ-like	NA	NA	NA	NA	NA
SPP97980.1|6637064_6638045_-	Putative Endo-polygalacturonase/pectinesterase; Putative nopAD effector protein	NA	NA	NA	NA	NA
SPP97981.1|6638300_6639599_-	putative Endo-polygalacturonase; Putative Type III effector NopAC	NA	NA	NA	NA	NA
SPP97982.1|6639959_6640880_-	protein of unknown function	NA	NA	NA	NA	NA
SPP97983.1|6640855_6641776_-	protein of unknown function	NA	NA	NA	NA	NA
SPP97984.1|6642407_6642866_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97985.1|6643412_6644582_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97986.1|6644584_6648019_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97987.1|6648015_6648654_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97988.1|6648643_6650173_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97989.1|6650622_6650889_+|transposase	protein of unknown function; putative transposase	transposase	NA	NA	NA	NA
SPP97990.1|6650842_6651055_+	Protein of unknown function	NA	NA	NA	NA	NA
SPP97991.1|6651118_6651715_+	conserved protein of unknown function; putative DNA methylase	NA	NA	NA	NA	NA
SPP97992.1|6651715_6652006_-	protein of unknown function	NA	NA	NA	NA	NA
SPP97993.1|6652158_6653523_-	Putative Serine/threonine-protein kinase HipA (Y4mE)	NA	NA	NA	NA	NA
SPP97994.1|6653497_6653851_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SPP97995.1|6654192_6654354_+	50S ribosomal subunit protein L33	NA	NA	NA	NA	NA
SPP97996.1|6655596_6656115_-	protein of unknown function; putative Ferredoxin--NADP+ reductase	NA	NA	NA	NA	NA
SPP97997.1|6658244_6658559_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97998.1|6658567_6658867_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP97999.1|6659401_6659755_+	Aspartate 1-decarboxylase	NA	NA	NA	NA	NA
SPP98002.1|6660976_6661519_+	ATP-dependent dethiobiotin synthetase BioD (fragment)	NA	NA	NA	NA	NA
SPP98003.1|6661821_6662121_+	Putative PLP-dependent aminotransferase (fragment)	NA	NA	NA	NA	NA
SPP98004.1|6662202_6662487_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98005.1|6662917_6663379_+	Putative Transcriptional regulatory protein	NA	NA	NA	NA	NA
SPP98006.1|6664299_6664503_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98007.1|6664735_6664858_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98008.1|6665164_6665344_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98009.1|6665556_6665763_-	putative cold shock protein y4cH	NA	A0A1W6JNX5	Morganella_phage	52.7	1.3e-10
SPP98010.1|6666264_6667185_-|protease	protein of unknown function; Putative protease	protease	NA	NA	NA	NA
SPP98014.1|6670959_6671169_-	Putative transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	34.9	3.5e-06
SPP98015.1|6672308_6672842_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98016.1|6673555_6674311_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98017.1|6674922_6675861_+	Phosphoenolpyruvate phosphomutase	NA	NA	NA	NA	NA
SPP98018.1|6676095_6676914_+	Nucleotidyl transferase	NA	NA	NA	NA	NA
SPP98019.1|6676921_6677530_+	conserved membrane protein of unknown function	NA	NA	NA	NA	NA
SPP98020.1|6677686_6678805_+	L-threonine O-3-phosphate decarboxylase	NA	NA	NA	NA	NA
SPP98021.1|6679185_6680670_-	Type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
SPP98022.1|6681217_6682699_-	putative multidrug resistance protein NorM	NA	NA	NA	NA	NA
SPP98023.1|6683543_6685115_-	Porin subfamily	NA	NA	NA	NA	NA
SPP98024.1|6685808_6686681_-	ABC transporter permease	NA	NA	NA	NA	NA
SPP98025.1|6686681_6687617_-	Glutathione transport system permease protein GsiC	NA	NA	NA	NA	NA
SPP98026.1|6687616_6688318_-	Putative peptide import ATP-binding protein BruAb2_1034 (fragment)	NA	NA	NA	NA	NA
SPP98027.1|6688608_6689595_-	oligopeptide transporter subunit; ATP-binding component of ABC superfamily	NA	G9BWD6	Planktothrix_phage	33.6	4.2e-17
SPP98028.1|6689618_6690119_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98029.1|6690201_6691782_-	Oligopeptide ABC transpoter oligopeptide-binding protein	NA	NA	NA	NA	NA
SPP98030.1|6692317_6692512_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98031.1|6692572_6692992_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98032.1|6692978_6693227_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98033.1|6693328_6694351_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98034.1|6694494_6695268_-|transposase	transposase (fragment)	transposase	S5WIU1	Leptospira_phage	39.5	1.7e-34
SPP98035.1|6695261_6695564_-	Insertion element ISR1 uncharacterized 10 kDa protein A3	NA	NA	NA	NA	NA
SPP98036.1|6695598_6695859_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98037.1|6696407_6696899_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98038.1|6696979_6697873_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98039.1|6697872_6698223_-	Transcriptional regulator, XRE family	NA	NA	NA	NA	NA
SPP98040.1|6698340_6699081_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98041.1|6699077_6700508_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98042.1|6700561_6700969_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98043.1|6701718_6701985_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98044.1|6702359_6703112_+	exported protein of unknown function	NA	NA	NA	NA	NA
SPP98045.1|6703641_6704505_-	putative Insertion sequence IS21 ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.1	3.5e-52
SPP98046.1|6704501_6704804_-	Integrase catalytic region (fragment)	NA	NA	NA	NA	NA
SPP98047.1|6704800_6705751_-|transposase	Putative transposase (Fragment)	transposase	NA	NA	NA	NA
SPP98048.1|6705892_6706339_-	Plasmid transfer factor TraG (fragment)	NA	NA	NA	NA	NA
SPP98049.1|6706798_6707707_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SPP98050.1|6707713_6708034_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98051.1|6709368_6709728_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98052.1|6709915_6710155_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98053.1|6710199_6710640_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98054.1|6711782_6712010_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98055.1|6713781_6713991_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98056.1|6713987_6716444_+	SMC domain protein	NA	NA	NA	NA	NA
SPP98057.1|6716931_6717081_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98058.1|6717538_6717976_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98061.1|6718886_6719333_+|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.6	3.0e-15
SPP98062.1|6719307_6719646_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98063.1|6719638_6720043_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98064.1|6720132_6720300_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98065.1|6720308_6720428_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98066.1|6720610_6720826_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98067.1|6721313_6721550_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98068.1|6721867_6722896_+	putative metal-dependent hydrolase with the TIM-barrel fold	NA	NA	NA	NA	NA
SPP98069.1|6723745_6724069_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98070.1|6724495_6725707_+	Aminotransferase class-V family protein 4	NA	NA	NA	NA	NA
SPP98071.1|6725777_6726080_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98072.1|6726098_6727199_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP98073.1|6728318_6729521_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98074.1|6729569_6729896_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98075.1|6731996_6732287_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98076.1|6732515_6732635_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98077.1|6732923_6733118_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98078.1|6733126_6733579_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
>prophage 9
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	6769530	6815435	8156021	integrase,transposase	Acidithiobacillus_phage(50.0%)	45	6808094:6808108	6811353:6811367
SPP98109.1|6769530_6770877_-|transposase	transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.1	2.1e-43
SPP98110.1|6771094_6772438_-	Glutamate dehydrogenase	NA	NA	NA	NA	NA
SPP98111.1|6773379_6774849_-	succinate-semialdehyde dehydrogenase I, NADP-dependent	NA	NA	NA	NA	NA
SPP98112.1|6774892_6775111_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98113.1|6775287_6775635_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98114.1|6776025_6776964_-	Glyoxylate/hydroxypyruvate reductase A	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	33.1	3.7e-07
SPP98115.1|6777866_6779732_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98118.1|6780769_6782509_-	Hydantoinase B/oxoprolinase	NA	NA	NA	NA	NA
SPP98119.1|6782505_6784587_-	5-oxoprolinase (ATP-hydrolyzing)	NA	NA	NA	NA	NA
SPP98120.1|6785793_6787410_-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II	NA	NA	NA	NA	NA
SPP98121.1|6787489_6788614_-	NAD-dependent epimerase/dehydratase	NA	NA	NA	NA	NA
SPP98122.1|6788987_6789686_-	Long-chain-fatty-acid--CoA ligase (fragment)	NA	NA	NA	NA	NA
SPP98123.1|6789628_6790276_-	Medium-chain-fatty-acid--CoA ligase (fragment)	NA	NA	NA	NA	NA
SPP98124.1|6790372_6790546_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98125.1|6790685_6791870_-	3-ketoacyl-CoA thiolase	NA	NA	NA	NA	NA
SPP98126.1|6791917_6794032_-	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPP98127.1|6794206_6794620_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98128.1|6794616_6795114_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98129.1|6795117_6796248_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98130.1|6796283_6797648_-	Acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPP98131.1|6797857_6799033_-	Thiolase	NA	NA	NA	NA	NA
SPP98132.1|6799029_6799422_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98133.1|6799652_6800807_-	Acyl-CoA dehydrogenase domain protein	NA	NA	NA	NA	NA
SPP98134.1|6800902_6802105_-	Pimeloyl-CoA dehydrogenase, large subunit	NA	NA	NA	NA	NA
SPP98135.1|6803069_6803930_-	putative ABC transporter, substrate binding protein (Amino acid)	NA	NA	NA	NA	NA
SPP98136.1|6804778_6806191_-	putative amidase AmiD	NA	NA	NA	NA	NA
SPP98137.1|6806494_6806716_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98138.1|6806696_6806924_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98139.1|6807563_6807869_-	protein of unknown function	NA	NA	NA	NA	NA
6808094:6808108	attL	CTCCGCCACATAATC	NA	NA	NA	NA
SPP98140.1|6808423_6808615_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98141.1|6808488_6809103_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98142.1|6808930_6810004_-|integrase	putative integrase/recombinase y4rE	integrase	NA	NA	NA	NA
SPP98143.1|6810034_6810538_-|integrase	Putative integrase	integrase	NA	NA	NA	NA
SPP98144.1|6810497_6811241_-|integrase	Putative integrase/recombinase y4rF (fragment)	integrase	NA	NA	NA	NA
SPP98145.1|6811343_6811499_-|transposase	transposase	transposase	NA	NA	NA	NA
6811353:6811367	attR	CTCCGCCACATAATC	NA	NA	NA	NA
SPP98146.1|6811971_6812526_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98147.1|6812522_6812780_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98148.1|6812655_6813213_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98149.1|6813004_6813172_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98150.1|6813216_6813525_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98151.1|6813705_6814062_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98152.1|6814114_6814720_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP98153.1|6814658_6814853_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98154.1|6814947_6815169_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98155.1|6815198_6815435_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	6818678	6871459	8156021	integrase,transposase	Stx2-converting_phage(25.0%)	56	6818994:6819016	6854233:6854255
SPP98161.1|6818678_6818912_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98162.1|6818991_6819462_-	protein of unknown function	NA	NA	NA	NA	NA
6818994:6819016	attL	AGCTTGGCCACATCGATTCCGAC	NA	NA	NA	NA
SPP98163.1|6820056_6821736_+	Nodulation protein U	NA	Q58MH7	Prochlorococcus_phage	33.0	4.2e-25
SPP98164.1|6822229_6822376_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98165.1|6822821_6823976_-	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
SPP98166.1|6824553_6825237_+|transposase	transposase (fragment)	transposase	A0A220NQR7	Corynebacterium_phage	48.1	1.6e-52
SPP98167.1|6825298_6826648_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98168.1|6826738_6827014_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98169.1|6827298_6828534_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP98170.1|6828391_6828871_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98171.1|6828752_6828962_+|transposase	transposase (fragment)	transposase	A0A220NQR7	Corynebacterium_phage	54.0	1.1e-07
SPP98172.1|6829238_6829604_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98173.1|6829552_6829879_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98174.1|6829959_6830082_+	protein of unknown function	NA	Q9JMP3	Wolbachia_phage	55.0	3.8e-05
SPP98175.1|6830206_6830497_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98176.1|6830493_6830739_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98177.1|6830887_6832333_-|transposase	transposase	transposase	Q9JMP3	Wolbachia_phage	34.5	1.3e-67
SPP98178.1|6832489_6834007_-	conserved protein of unknown function	NA	A0A0P0ZEB3	Stx2-converting_phage	40.4	1.2e-92
SPP98179.1|6834347_6834557_-	conserved protein of unknown function	NA	A0A0P0ZDM8	Stx2-converting_phage	50.7	3.1e-15
SPP98180.1|6834553_6834988_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP98183.1|6835688_6837194_-	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP98184.1|6837679_6838159_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98185.1|6838022_6838565_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98186.1|6838850_6839600_-	cAMP-binding protein	NA	NA	NA	NA	NA
SPP98187.1|6839984_6840806_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP98188.1|6840857_6840971_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98189.1|6843741_6844773_-	Beta-lactamase domain-containing protein	NA	NA	NA	NA	NA
SPP98190.1|6845433_6847083_-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II	NA	A0A1V0SBX8	Catovirus	27.4	2.6e-11
SPP98191.1|6847286_6848414_-	(R)-benzylsuccinyl-CoA dehydrogenase	NA	NA	NA	NA	NA
SPP98192.1|6850761_6850902_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98193.1|6851438_6851588_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98194.1|6851577_6851832_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98195.1|6851804_6852047_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98196.1|6852288_6852708_+|integrase	Putative integrase/recombinase y4rB (fragment)	integrase	NA	NA	NA	NA
SPP98197.1|6852691_6852985_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98198.1|6853048_6853621_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98199.1|6853611_6853995_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98200.1|6854343_6854703_-	protein of unknown function	NA	NA	NA	NA	NA
6854233:6854255	attR	AGCTTGGCCACATCGATTCCGAC	NA	NA	NA	NA
SPP98201.1|6855220_6855451_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98202.1|6855480_6855702_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98203.1|6855765_6856536_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98204.1|6858187_6858565_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98205.1|6858604_6859132_+	protein of unknown function	NA	A0A2H4UV16	Bodo_saltans_virus	31.2	2.7e-07
SPP98206.1|6859513_6861166_-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II	NA	A0A2H4PQU7	Staphylococcus_phage	26.5	8.9e-28
SPP98207.1|6861414_6861639_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98208.1|6862313_6862523_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98209.1|6862644_6862998_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98210.1|6863030_6863720_+|transposase	transposase (fragment)	transposase	A0A0P0ZEB3	Stx2-converting_phage	31.6	3.5e-18
SPP98211.1|6863697_6864723_+	conserved protein of unknown function	NA	S5VTD3	Leptospira_phage	31.8	1.1e-33
SPP98212.1|6865072_6865213_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98213.1|6865362_6865563_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98214.1|6866517_6866820_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98215.1|6868474_6869077_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98216.1|6869073_6870639_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98217.1|6870689_6871043_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98218.1|6871036_6871459_-|transposase	Putative transposase	transposase	NA	NA	NA	NA
>prophage 11
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	6888562	6935161	8156021	transposase	Stx2-converting_phage(25.0%)	53	NA	NA
SPP98238.1|6888562_6889402_-|transposase	Putative transposase	transposase	NA	NA	NA	NA
SPP98239.1|6888654_6889212_-|transposase	Putative transposase	transposase	NA	NA	NA	NA
SPP98240.1|6890124_6890451_-	Integrase, catalytic region (fragment)	NA	NA	NA	NA	NA
SPP98241.1|6891633_6891990_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98242.1|6892027_6892273_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98243.1|6892481_6892751_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98244.1|6893406_6893847_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98245.1|6894198_6894576_-	PUTATIVE INTEGRASE/RECOMBINASE PROTEIN (fragment)	NA	NA	NA	NA	NA
SPP98246.1|6894565_6895009_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98247.1|6894996_6895398_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98248.1|6895832_6896213_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98251.1|6898284_6898488_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98252.1|6898484_6898820_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98253.1|6899297_6900089_-	conserved protein of unknown function	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.2	4.0e-10
SPP98254.1|6900282_6901551_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98255.1|6902606_6902921_+	conserved protein of unknown function	NA	A0A0P0ZDM8	Stx2-converting_phage	56.4	5.2e-22
SPP98256.1|6902931_6903357_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98257.1|6903469_6905062_-	conserved protein of unknown function	NA	A0A218MNE7	uncultured_virus	32.1	4.5e-53
SPP98258.1|6905136_6905481_-	conserved protein of unknown function	NA	S5VXZ8	Leptospira_phage	32.7	5.9e-11
SPP98259.1|6905477_6905591_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98260.1|6906075_6906453_+	conserved protein of unknown function	NA	A0A0P0ZEB3	Stx2-converting_phage	40.7	1.1e-10
SPP98261.1|6906404_6906893_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98262.1|6907369_6908212_-	putative Regulatory protein IclR	NA	NA	NA	NA	NA
SPP98263.1|6908289_6908985_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98264.1|6909243_6909738_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98265.1|6909680_6911000_+	putative FAD dependent oxidoreductase	NA	NA	NA	NA	NA
SPP98266.1|6911260_6911485_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98267.1|6911499_6911862_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98268.1|6911807_6912068_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98269.1|6912152_6912617_+	Putative MFS transporter (fragment)	NA	NA	NA	NA	NA
SPP98270.1|6912639_6913041_+	conserved protein of unknown function	NA	U5N3V8	Enterobacteria_phage	50.0	6.0e-31
SPP98271.1|6913204_6914245_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98272.1|6914269_6914461_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98273.1|6914553_6916197_-	Alcohol dehydrogenase [acceptor]	NA	A0A1V0S9J5	Catovirus	28.5	6.3e-50
SPP98274.1|6916355_6917303_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98275.1|6918414_6918639_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98276.1|6918655_6919156_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98277.1|6919520_6920375_-	glutamine transporter subunit; ATP-binding component of ABC superfamily	NA	G3M9Y6	Bacillus_virus	30.4	1.2e-20
SPP98278.1|6920379_6921027_-	Amino acid ABC transporter permease	NA	NA	NA	NA	NA
SPP98279.1|6921023_6921743_-	putative amino-acid ABC transporter permease protein y4tF	NA	NA	NA	NA	NA
SPP98280.1|6921754_6922615_-	putative Amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SPP98281.1|6922906_6923263_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98282.1|6923920_6924046_+	Insertion element ISR1 uncharacterized 10 kDa protein A3 (fragment)	NA	NA	NA	NA	NA
SPP98283.1|6924569_6924752_+	protein of unknown function	NA	NA	NA	NA	NA
SPP98284.1|6924879_6926508_-	Long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
SPP98285.1|6926729_6927251_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98286.1|6927328_6927724_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98287.1|6927743_6928007_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98288.1|6928172_6929291_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98289.1|6929668_6930088_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98290.1|6930280_6931867_-	Diaminobutyrate--2-oxoglutarate aminotransferase	NA	NA	NA	NA	NA
SPP98291.1|6931887_6933294_-	putative multidrug resistance protein NorM	NA	NA	NA	NA	NA
SPP98292.1|6934807_6935161_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
>prophage 12
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	6985536	7019946	8156021	transposase	Ralstonia_phage(12.5%)	33	NA	NA
SPP98333.1|6985536_6986547_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98334.1|6986601_6986952_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98335.1|6987004_6987430_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98336.1|6987489_6987672_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98337.1|6987737_6987959_-	protein of unknown function	NA	A0A077KET4	Ralstonia_phage	48.6	6.1e-09
SPP98338.1|6988431_6989514_-	Inner-membrane translocator (Modular protein)	NA	NA	NA	NA	NA
SPP98339.1|6989513_6990398_-	Branched-chain amino acid ABC-type transport system, permease component	NA	NA	NA	NA	NA
SPP98340.1|6990394_6991126_-	ABC-type branched-chain amino acid transport systems, ATPase component	NA	A0A1V0SE00	Indivirus	23.6	5.0e-07
SPP98341.1|6991122_6991878_-	ABC transporter related protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	28.0	5.5e-09
SPP98342.1|6991954_6993190_-	Extracellular ligand-binding receptor	NA	NA	NA	NA	NA
SPP98343.1|6993237_6994554_-	Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
SPP98344.1|6994585_6995446_-	Extracellular ligand-binding receptor (fragment)	NA	NA	NA	NA	NA
SPP98345.1|6995674_6996355_-	putative isochorismatase family protein	NA	NA	NA	NA	NA
SPP98346.1|6996323_6997151_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
SPP98347.1|6997829_6999065_+	Acetyl-CoA synthetase (fragment)	NA	NA	NA	NA	NA
SPP98348.1|6999000_7000083_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98349.1|7000103_7000700_+	Acetyl-coenzyme A synthetase (fragment)	NA	A0A2H4PQU7	Staphylococcus_phage	42.9	4.3e-33
SPP98350.1|7001487_7002126_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
SPP98351.1|7002883_7004266_-	conserved protein of unknown function	NA	H7BVN7	unidentified_phage	30.6	5.2e-13
SPP98352.1|7005093_7006728_-	Threonine synthase	NA	A0A2P0VNF3	Tetraselmis_virus	30.2	5.7e-11
SPP98353.1|7006737_7007031_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98354.1|7007045_7007405_-	protein of unknown function	NA	NA	NA	NA	NA
SPP98355.1|7007809_7008076_+	Insertion element ISR1 uncharacterized 10 kDa protein A3	NA	NA	NA	NA	NA
SPP98356.1|7008069_7008843_+	conserved protein of unknown function	NA	S5WIU1	Leptospira_phage	39.5	3.3e-33
SPP98357.1|7008986_7010009_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP98358.1|7010113_7010359_+|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP98359.1|7010448_7011489_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP98360.1|7012725_7013019_+	conserved protein of unknown function; putative Cell filamentation protein Fic (Fragment)	NA	NA	NA	NA	NA
SPP98361.1|7013537_7014650_+	Putative Type III effector	NA	NA	NA	NA	NA
SPP98362.1|7015363_7015783_+	conserved protein of unknown function; Putative SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
SPP98363.1|7016305_7016857_+	Putative MarR family transcriptional regulator	NA	NA	NA	NA	NA
SPP98364.1|7017540_7018032_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP98365.1|7018599_7019946_-|transposase	Putative transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.6	5.5e-44
>prophage 13
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	7642758	7650004	8156021		Bacillus_phage(16.67%)	6	NA	NA
SPP98968.1|7642758_7644555_+	Beta-(1-->2)glucan export ATP-binding/permease protein NdvA	NA	W8CYL7	Bacillus_phage	21.9	6.7e-21
SPP98969.1|7644646_7646332_+	conserved protein of unknown function	NA	B6DZZ7	Stx2-converting_phage	34.7	4.5e-27
SPP98970.1|7646525_7648211_+	acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)	NA	Q75ZG1	Hepacivirus	26.9	3.8e-42
SPP98971.1|7648228_7648783_+	conserved protein of unknown function	NA	A0A1V0SIY0	Klosneuvirus	32.4	8.4e-15
SPP98972.1|7648891_7649377_+	Peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	1.5e-20
SPP98973.1|7649539_7650004_-	ribonuclease HI, degrades RNA of DNA-RNA hybrids	NA	J9Q745	Salmonella_phage	57.6	3.2e-44
>prophage 14
LS398110	Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257	8156021	7858086	7909355	8156021	transposase	Klosneuvirus(15.38%)	51	NA	NA
SPP99196.1|7858086_7858461_-|transposase	transposase (fragment)	transposase	NA	NA	NA	NA
SPP99197.1|7858463_7859075_-	Integrase family protein (fragment)	NA	NA	NA	NA	NA
SPP99198.1|7859177_7859579_+	Polyketide cyclase / dehydrase and lipid transport	NA	NA	NA	NA	NA
SPP99199.1|7859600_7861043_-	conserved membrane protein of unknown function	NA	NA	NA	NA	NA
SPP99200.1|7861337_7861751_-	conserved protein of unknown function	NA	A0A1V0SGX0	Hokovirus	35.6	1.0e-09
SPP99201.1|7861854_7862991_-	Deoxycytidine deaminase	NA	NA	NA	NA	NA
SPP99202.1|7863224_7864412_+	O-succinylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
SPP99203.1|7864527_7865520_-	Lysophospholipase L1-like esterase	NA	NA	NA	NA	NA
SPP99204.1|7865532_7866312_-	conserved exported protein of unknown function	NA	NA	NA	NA	NA
SPP99205.1|7866311_7867568_-	conserved membrane protein of unknown function	NA	NA	NA	NA	NA
SPP99206.1|7867752_7868157_+	Protein ApaG	NA	NA	NA	NA	NA
SPP99207.1|7868710_7869670_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP99208.1|7869933_7871034_+|transposase	transposase	transposase	NA	NA	NA	NA
SPP99209.1|7871052_7871559_+	protein of unknown function	NA	NA	NA	NA	NA
SPP99210.1|7871807_7872815_-	33 kDa chaperonin	NA	NA	NA	NA	NA
SPP99211.1|7873063_7873987_-	Ornithine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	29.9	4.1e-22
SPP99212.1|7873986_7875195_-	Acetylornithine aminotransferase 1	NA	A0A1V0SKB7	Klosneuvirus	26.2	1.5e-24
SPP99213.1|7875656_7876169_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99214.1|7876195_7876594_-|transposase	transposase (fragment)	transposase	A0A1V0SDF8	Indivirus	26.2	5.4e-08
SPP99215.1|7876751_7877138_-|transposase	transposase	transposase	NA	NA	NA	NA
SPP99216.1|7877475_7878183_-	DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)	NA	W8CYM9	Bacillus_phage	36.3	2.9e-36
SPP99217.1|7878198_7878915_-	Phosphate-specific transport system accessory protein PhoU homolog	NA	NA	NA	NA	NA
SPP99218.1|7878926_7879748_-	high-affinity phosphate transport protein (ABC superfamily, atp_bind)	NA	A0A1V0SJ29	Klosneuvirus	27.2	5.6e-15
SPP99219.1|7879744_7880590_-	phosphate transporter subunit; membrane component of ABC superfamily	NA	NA	NA	NA	NA
SPP99220.1|7880591_7881581_-	phosphate transporter subunit; membrane component of ABC superfamily	NA	NA	NA	NA	NA
SPP99221.1|7881749_7882763_-	phosphate transporter subunit; periplasmic-binding component of ABC superfamily	NA	A0A222YW41	Synechococcus_phage	37.6	1.1e-47
SPP99222.1|7882907_7884206_-	Phosphate regulon, two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.0	1.0e-31
SPP99223.1|7884252_7885308_-	conserved membrane protein of unknown function	NA	NA	NA	NA	NA
SPP99224.1|7885707_7886010_-	conserved membrane protein of unknown function	NA	NA	NA	NA	NA
SPP99225.1|7886012_7887407_-	conserved protein of unknown function	NA	G3M9Z0	Bacillus_virus	36.3	1.0e-08
SPP99226.1|7887572_7888631_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99227.1|7888813_7889614_+	Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
SPP99228.1|7889795_7891247_-	Benzoyl-CoA oxygenase component B	NA	NA	NA	NA	NA
SPP99229.1|7891398_7893087_-	Benzoyl-CoA-dihydrodiol lyase	NA	NA	NA	NA	NA
SPP99230.1|7893224_7894037_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99231.1|7894293_7895835_-	4-hydroxybenzoate--CoA/benzoate--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.4	2.6e-13
SPP99232.1|7896036_7896957_+	Shikimate kinase	NA	NA	NA	NA	NA
SPP99233.1|7896959_7897355_+	Group 2 truncated hemoglobin GlbO	NA	NA	NA	NA	NA
SPP99234.1|7897521_7897854_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99235.1|7897918_7898704_-	Pca regulon regulatory protein	NA	NA	NA	NA	NA
SPP99236.1|7898813_7900172_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99237.1|7900317_7901754_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99238.1|7902184_7902898_-	High-affinity branched-chain amino acid transport ATP-binding protein BraG	NA	F2Y2R6	Organic_Lake_phycodnavirus	26.7	5.5e-11
SPP99239.1|7902890_7903658_-	ABC-type branched-chain amino acid transport system, ATPase component	NA	A0A2R8FG22	Brazilian_cedratvirus	29.8	1.7e-13
SPP99240.1|7903650_7904595_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SPP99241.1|7904608_7905526_-	ABC transporter permease protein	NA	NA	NA	NA	NA
SPP99242.1|7905919_7906138_-	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99243.1|7906139_7906796_-	Isovaleryl-homoserine lactone synthase	NA	NA	NA	NA	NA
SPP99244.1|7906881_7907619_-	Transcriptional activator protein BjaR1	NA	A0A1I9KF49	Aeromonas_phage	32.0	5.7e-19
SPP99245.1|7907792_7907969_+	conserved protein of unknown function	NA	NA	NA	NA	NA
SPP99246.1|7908272_7909355_-|transposase	transposase	transposase	NA	NA	NA	NA
