The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029539	Aquitalea sp. USM4 chromosome, complete genome	4291790	884954	893929	4291790		Caulobacter_phage(16.67%)	10	NA	NA
QBJ77360.1|884954_886736_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.9	2.3e-74
QBJ77361.1|886798_887245_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	48.6	5.5e-25
QBJ77362.1|887351_887564_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QBJ77363.1|887695_888490_-	thiazole synthase	NA	NA	NA	NA	NA
QBJ77364.1|888514_888715_-	thiamine biosynthesis protein ThiS	NA	NA	NA	NA	NA
QBJ77365.1|888718_890875_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9L285	Tupanvirus	34.8	1.9e-09
QBJ77366.1|890898_891105_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
QBJ77367.1|891175_891805_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	36.6	1.6e-17
QBJ77368.1|891972_893271_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	39.3	1.8e-68
QBJ77369.1|893371_893929_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	41.2	5.8e-32
>prophage 2
CP029539	Aquitalea sp. USM4 chromosome, complete genome	4291790	2194148	2201012	4291790		Escherichia_phage(33.33%)	7	NA	NA
QBJ78426.1|2194148_2194697_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	60.9	1.7e-52
QBJ78427.1|2194712_2195582_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.4	2.9e-102
QBJ78428.1|2195598_2196492_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	33.2	8.5e-25
QBJ78429.1|2196488_2197553_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.3	8.9e-90
QBJ78430.1|2197753_2198854_+	glycosyl transferase	NA	NA	NA	NA	NA
QBJ78431.1|2199026_2199314_+	co-chaperone GroES	NA	A0A221S308	uncultured_virus	44.6	1.1e-15
QBJ78432.1|2199368_2201012_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	64.4	2.7e-178
>prophage 3
CP029539	Aquitalea sp. USM4 chromosome, complete genome	4291790	2701429	2710887	4291790		Hokovirus(16.67%)	10	NA	NA
QBJ78822.1|2701429_2703007_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	34.6	4.7e-18
QBJ78823.1|2703072_2703429_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ78824.1|2703425_2703881_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	41.0	1.8e-23
QBJ78825.1|2704059_2704497_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
QBJ78826.1|2704489_2704798_+	RnfH family protein	NA	NA	NA	NA	NA
QBJ78827.1|2704834_2706628_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.5	4.1e-18
QBJ80340.1|2706704_2706995_-	cell division protein FtsB	NA	NA	NA	NA	NA
QBJ78828.1|2707003_2708287_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	62.7	1.0e-148
QBJ78829.1|2708392_2709244_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.3	2.3e-48
QBJ78830.1|2709246_2710887_-	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	54.1	6.3e-159
>prophage 4
CP029539	Aquitalea sp. USM4 chromosome, complete genome	4291790	3168189	3176987	4291790	tRNA	uncultured_Mediterranean_phage(33.33%)	8	NA	NA
QBJ79195.1|3168189_3168513_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.0	1.0e-12
QBJ79196.1|3168633_3169749_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.1	1.5e-87
QBJ79197.1|3170213_3172115_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	39.3	7.1e-130
QBJ79198.1|3172153_3172678_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	6.3e-12
QBJ79199.1|3172834_3173032_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
QBJ79200.1|3173044_3173401_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
QBJ79201.1|3173611_3174595_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.1	5.8e-35
QBJ79202.1|3174614_3176987_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	28.6	3.1e-05
>prophage 1
CP029540	Aquitalea sp. USM4 plasmid unnamed, complete sequence	54370	12674	33619	54370	plate,tail,terminase,coat	uncultured_virus(20.0%)	25	NA	NA
QBJ80504.1|12674_13799_-|plate	baseplate protein	plate	B3GAJ9	uncultured_virus	38.8	3.2e-45
QBJ80505.1|13800_14166_-|tail	phage tail protein	tail	NA	NA	NA	NA
QBJ80506.1|14168_14813_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
QBJ80507.1|14809_15916_-	rhs element Vgr protein	NA	NA	NA	NA	NA
QBJ80508.1|15915_16890_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80509.1|16893_18795_-	hypothetical protein	NA	A4PE52	Ralstonia_virus	24.4	1.4e-24
QBJ80510.1|18830_19043_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ80511.1|19240_20059_-	hypothetical protein	NA	B6SD63	Bacteriophage	57.8	1.7e-27
QBJ80512.1|20285_20765_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80513.1|20942_21341_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80514.1|21430_21856_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80515.1|21907_23467_-|tail	phage tail protein	tail	B3GAJ6	uncultured_virus	43.7	8.2e-92
QBJ80516.1|23682_24501_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80517.1|24502_25141_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80518.1|25141_25540_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80519.1|25749_26901_-|coat	P22 coat - protein 5 family protein	coat	W6EBZ8	Rhizobium_phage	49.6	4.1e-88
QBJ80520.1|26967_27720_-	hypothetical protein	NA	A0A0S2SY92	Pseudomonas_phage	51.6	2.3e-52
QBJ80558.1|27814_29146_-	DNA-binding protein	NA	A0A0H5AWC7	Pseudomonas_phage	44.1	1.5e-94
QBJ80521.1|29201_30476_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	63.2	4.0e-153
QBJ80522.1|30462_31221_-|terminase	terminase small subunit	terminase	I6X6R5	Burkholderia_virus	43.3	2.0e-35
QBJ80523.1|31294_31684_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80524.1|31674_31857_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80525.1|31853_32102_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80526.1|32782_33283_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ80527.1|33301_33619_-	hypothetical protein	NA	F8TUJ6	EBPR_podovirus	44.0	2.0e-13
