assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004328825.1_ASM432882v1	CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	1	955299-955510	1,1	CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	3,3	3	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP025276.1_956785_956956_+,NA|162aa|down_7|CP025276.1_963038_963524_-	NA|381aa|up_9|CP025276.1_941107_942250_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP025276.1_942293_945050_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP025276.1_945107_946403_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP025276.1_946454_948689_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP025276.1_948773_949130_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP025276.1_949095_949392_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP025276.1_950148_950949_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP025276.1_951176_952814_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP025276.1_952896_954195_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP025276.1_954330_955002_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP025276.1_955607_956405_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP025276.1_956494_956857_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP025276.1_956785_956956_+	NA	NA|600aa|down_3|CP025276.1_957292_959092_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP025276.1_959091_960804_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP025276.1_960879_961614_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP025276.1_961701_962655_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|162aa|down_7|CP025276.1_963038_963524_-	NA	NA|349aa|down_8|CP025276.1_965658_966705_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_9|CP025276.1_966955_967864_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCA_004328825.1_ASM432882v1	CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	2	964640-965644	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	4	4	964729-964761|965461-965493|964730-964761|965462-965493	CP025276.1_2367448-2367416|CP025276.1_2953841-2953873|CP025276.1_2367447-2367416|CP025276.1_2953842-2953873	I-E:I-E:I-E	16,16,16	16	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA|57aa|up_5|CP025276.1_956785_956956_+,NA|162aa|up_0|CP025276.1_963038_963524_-,NA	NA|433aa|up_9|CP025276.1_952896_954195_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_8|CP025276.1_954330_955002_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_7|CP025276.1_955607_956405_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_6|CP025276.1_956494_956857_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|up_5|CP025276.1_956785_956956_+	NA	NA|600aa|up_4|CP025276.1_957292_959092_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|CP025276.1_959091_960804_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|CP025276.1_960879_961614_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_1|CP025276.1_961701_962655_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|162aa|up_0|CP025276.1_963038_963524_-	NA	NA|349aa|down_0|CP025276.1_965658_966705_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP025276.1_966955_967864_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP025276.1_967873_969313_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP025276.1_969299_969905_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP025276.1_969922_970279_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP025276.1_970469_970781_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP025276.1_970799_971510_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP025276.1_971509_971989_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP025276.1_971985_973035_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP025276.1_973015_973777_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
