The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	1130811	1197012	4622297	holin,integrase,protease,tail,terminase,head,portal,tRNA,plate,capsid	Salmonella_phage(60.0%)	69	1126255:1126270	1158034:1158049
1126255:1126270	attL	GCATCAGCCACACGAT	NA	NA	NA	NA
QBJ45874.1|1130811_1131987_-|integrase	integrase	integrase	I6PDJ1	Cronobacter_phage	67.6	8.0e-148
QBJ45875.1|1131947_1132154_-	excisionase	NA	I6PBM8	Cronobacter_phage	77.0	1.1e-23
QBJ45876.1|1132194_1133061_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ45877.1|1133799_1134495_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
QBJ45878.1|1134592_1134817_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QBJ45879.1|1134845_1135400_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
QBJ45880.1|1135396_1136545_+	peptidase	NA	A5LH69	Enterobacteria_phage	80.6	4.5e-164
QBJ45881.1|1136541_1136766_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QBJ45882.1|1136762_1137722_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	80.9	1.6e-117
QBJ45883.1|1137681_1138206_+	hypothetical protein	NA	Q8HA95	Salmonella_phage	97.7	2.9e-94
QBJ45884.1|1138205_1139099_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	93.2	1.4e-160
QBJ45885.1|1139095_1139485_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	96.9	1.7e-67
QBJ45886.1|1139501_1140362_+	DNA-binding protein	NA	A0A192Y6F8	Salmonella_phage	97.2	9.0e-157
QBJ49105.1|1140369_1141359_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	98.5	7.5e-192
QBJ45887.1|1141373_1141742_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	83.3	2.0e-52
QBJ45888.1|1141738_1142374_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ45889.1|1142366_1142789_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ45890.1|1142799_1143897_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ45891.1|1144155_1144545_+	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	71.8	6.2e-41
QBJ45892.1|1144531_1144813_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
QBJ45893.1|1144812_1145430_+	endolysin	NA	Q8HA86	Salmonella_phage	78.9	1.8e-90
QBJ45894.1|1145637_1145955_+	Rz1 lytic protein	NA	Q8SBD8	Shigella_phage	79.8	5.1e-41
QBJ45895.1|1146004_1146862_-|protease	serine protease	protease	S5FV10	Shigella_phage	26.8	1.9e-10
QBJ45896.1|1146976_1147327_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	97.4	3.6e-64
QBJ45897.1|1147470_1147908_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	62.8	4.6e-32
QBJ45898.1|1147907_1149638_+|terminase	terminase large subunit	terminase	Q8W631	Enterobacteria_phage	58.9	1.2e-197
QBJ45899.1|1149908_1150982_+|portal	phage portal protein	portal	A0A1W6JP33	Morganella_phage	84.4	2.3e-178
QBJ45900.1|1150995_1151598_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	91.5	2.0e-99
QBJ45901.1|1151607_1152837_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	90.4	8.7e-206
QBJ45902.1|1152916_1153240_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	72.0	2.6e-40
QBJ45903.1|1153236_1153641_+|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	97.8	7.8e-71
QBJ45904.1|1153612_1154125_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	99.4	1.7e-91
QBJ45905.1|1154121_1154682_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	98.4	2.0e-104
QBJ45906.1|1154685_1154850_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
QBJ45907.1|1154839_1156336_+|tail	phage tail protein	tail	A0A192Y7L1	Salmonella_phage	99.8	6.1e-278
QBJ45908.1|1156335_1156692_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
QBJ45909.1|1156688_1157015_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	98.1	3.3e-51
QBJ45910.1|1157099_1159028_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.5	0.0e+00
1158034:1158049	attR	ATCGTGTGGCTGATGC	NA	NA	NA	NA
QBJ45911.1|1159061_1160402_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.3	2.2e-250
QBJ45912.1|1160398_1161457_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.7	5.0e-202
QBJ45913.1|1161456_1161990_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	98.3	5.5e-96
QBJ45914.1|1161994_1162408_+	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	100.0	3.1e-75
QBJ45915.1|1162957_1163479_+|tail	phage tail protein	tail	Q8HAB6	Salmonella_phage	99.4	1.1e-93
QBJ45916.1|1163481_1164069_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	99.0	4.1e-113
QBJ45917.1|1164055_1165231_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	93.1	1.1e-48
QBJ45918.1|1165227_1166052_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	93.4	6.0e-150
QBJ45919.1|1166041_1166611_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	84.7	6.5e-87
QBJ45920.1|1166939_1167860_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49106.1|1168461_1169625_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBJ45921.1|1169632_1171813_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
QBJ45922.1|1171809_1173219_-	type I secretion protein TolC	NA	NA	NA	NA	NA
QBJ45923.1|1173283_1184758_-	Ig-like domain repeat protein	NA	NA	NA	NA	NA
QBJ49107.1|1185372_1185855_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
QBJ45924.1|1186004_1186481_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
QBJ45925.1|1186470_1186761_+	RnfH family protein	NA	NA	NA	NA	NA
QBJ45926.1|1186767_1186977_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ45927.1|1186921_1187260_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QBJ45928.1|1187408_1189070_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QBJ45929.1|1189155_1190034_-	NAD(+) kinase	NA	NA	NA	NA	NA
QBJ49108.1|1189965_1190160_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
QBJ45930.1|1190156_1190747_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QBJ45931.1|1190781_1191387_-	cytoplasmic protein	NA	NA	NA	NA	NA
QBJ45932.1|1191507_1192749_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
QBJ45933.1|1192813_1193605_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QBJ45934.1|1193550_1193847_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ45935.1|1193770_1195132_+	signal recognition particle protein	NA	NA	NA	NA	NA
QBJ45936.1|1195384_1195633_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QBJ49109.1|1195651_1196200_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QBJ45937.1|1196244_1197012_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 2
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	1464761	1499966	4622297	holin,protease,tail,terminase,lysis,portal,coat	Salmonella_phage(48.08%)	53	NA	NA
QBJ46156.1|1464761_1465700_+|protease	outer membrane protease PgtE	protease	NA	NA	NA	NA
QBJ46157.1|1465721_1465952_-	hypothetical protein	NA	C6ZR23	Salmonella_phage	93.9	5.7e-10
QBJ46158.1|1465961_1466165_-	hypothetical protein	NA	C6ZR24	Salmonella_phage	97.0	2.7e-32
QBJ46159.1|1466261_1466885_-	Eac protein	NA	A0A220NQT7	Salmonella_phage	95.2	5.7e-113
QBJ46160.1|1466985_1467165_-	Eag protein	NA	K7PL40	Enterobacteria_phage	93.2	2.9e-25
QBJ46161.1|1467261_1468296_-	DUF550 domain-containing protein	NA	K7P7E4	Enterobacteria_phage	84.8	7.4e-81
QBJ46162.1|1468299_1468773_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	79.5	9.5e-68
QBJ46163.1|1469519_1469921_-	chromosome partitioning protein ParB	NA	S4TTI6	Salmonella_phage	100.0	2.9e-73
QBJ46164.1|1469917_1470424_-	hypothetical protein	NA	Q5G8U6	Enterobacteria_phage	80.2	1.3e-51
QBJ46165.1|1470601_1470895_-	RecBCD nuclease inhibitor	NA	E7C9P8	Salmonella_phage	95.9	1.4e-48
QBJ46166.1|1470941_1471226_-	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	98.9	5.2e-45
QBJ46167.1|1471225_1471933_-	recombinase	NA	I6R0N0	Salmonella_phage	88.9	1.2e-119
QBJ46168.1|1472062_1472251_-	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
QBJ46169.1|1472231_1472405_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
QBJ46170.1|1472598_1473366_-	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	85.5	1.2e-80
QBJ46171.1|1473447_1473750_-	regulator	NA	I6S5Z3	Salmonella_phage	97.0	7.0e-48
QBJ49120.1|1474104_1474767_-	LexA family transcriptional repressor	NA	A0A0M4QWY1	Salmonella_phage	99.5	8.2e-126
QBJ46172.1|1474885_1475101_+	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
QBJ46173.1|1475211_1475493_+	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
QBJ46174.1|1475527_1475674_+	hypothetical protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
QBJ46175.1|1475666_1476500_+	DNA replication protein	NA	A0A1R3Y5R9	Salmonella_virus	98.6	2.1e-150
QBJ46176.1|1476496_1477873_+	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	99.8	4.3e-254
QBJ46177.1|1477869_1478139_+	hypothetical protein	NA	I6S1N5	Salmonella_phage	97.8	1.9e-44
QBJ46178.1|1478194_1478653_+	hypothetical protein	NA	K7PKW7	Enterobacterial_phage	97.9	6.8e-79
QBJ46179.1|1478649_1479522_+	hypothetical protein	NA	I6R0S6	Salmonella_phage	93.1	6.7e-168
QBJ46180.1|1479658_1479835_+	NinE family protein	NA	I6RSQ2	Salmonella_phage	100.0	4.6e-28
QBJ46181.1|1479831_1480257_+	DUF2591 domain-containing protein	NA	A0A088CQ65	Enterobacteria_phage	73.3	5.9e-53
QBJ46182.1|1480249_1480426_+	protein ninF	NA	A0A220NRM2	Escherichia_phage	96.6	1.7e-25
QBJ46183.1|1480418_1480631_+	hypothetical protein	NA	K7PK10	Enterobacteria_phage	100.0	1.6e-35
QBJ46184.1|1480623_1480914_+	DUF1364 domain-containing protein	NA	A0A192Y6R9	Salmonella_phage	99.0	1.1e-50
QBJ46185.1|1480910_1481273_+	hypothetical protein	NA	K7P6I9	Enterobacteria_phage	99.2	3.5e-62
QBJ46186.1|1481269_1481458_+	protein ninH	NA	A5VW84	Enterobacteria_phage	100.0	5.5e-27
QBJ46187.1|1481454_1482078_+	antitermination protein	NA	K7PM87	Enterobacteria_phage	100.0	3.0e-114
QBJ46188.1|1482511_1482838_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
QBJ46189.1|1482821_1483259_+	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.2	4.1e-73
QBJ46190.1|1483255_1483717_+|lysis	lysis protein	lysis	K7PJW6	Enterobacteria_phage	79.3	4.5e-54
QBJ46191.1|1483935_1484457_+	DNA-binding protein	NA	K7P7K9	Enterobacteria_phage	98.8	5.5e-93
QBJ46192.1|1484930_1485173_+	hypothetical protein	NA	A0A0M4R322	Salmonella_phage	100.0	7.5e-37
QBJ46193.1|1485176_1485566_+	hypothetical protein	NA	C6ZR72	Salmonella_phage	99.2	1.5e-74
QBJ46194.1|1485565_1485970_+	Decoration protein	NA	C6ZR73	Salmonella_phage	98.5	2.0e-66
QBJ46195.1|1485982_1486441_+|terminase	terminase	terminase	A0A2P1MXF5	Escherichia_phage	66.2	3.3e-49
QBJ46196.1|1486440_1487901_+|terminase	terminase	terminase	W6MW26	Pseudomonas_phage	76.5	3.3e-220
QBJ46197.1|1487900_1490078_+|portal	portal protein	portal	A0A1R3Y5N6	Salmonella_virus	99.9	0.0e+00
QBJ46198.1|1490091_1491003_+	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	99.7	1.1e-160
QBJ46199.1|1491002_1492295_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	99.8	2.5e-243
QBJ46200.1|1492335_1492896_+	hypothetical protein	NA	C6ZR11	Salmonella_phage	98.9	3.1e-102
QBJ46201.1|1492879_1493380_+	hypothetical protein	NA	I1TEJ0	Salmonella_phage	98.8	7.9e-89
QBJ46202.1|1493339_1494758_+	hypothetical protein	NA	B9UDK6	Salmonella_phage	97.7	3.3e-273
QBJ46203.1|1494761_1495463_+|tail	phage tail protein	tail	C6ZR14	Salmonella_phage	93.6	2.3e-70
QBJ46204.1|1495462_1495918_+	hypothetical protein	NA	I6R0L6	Salmonella_phage	99.3	3.9e-87
QBJ46205.1|1495920_1496610_+	DNA transfer protein	NA	B9UDK9	Salmonella_phage	93.4	6.6e-94
QBJ49121.1|1496652_1497957_+	DNA transfer protein	NA	A0A220NR03	Salmonella_phage	95.2	1.1e-227
QBJ46206.1|1497956_1499966_+	DNA transfer protein	NA	Q76H13	Enterobacteria_phage	87.4	0.0e+00
>prophage 3
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	1730540	1739711	4622297	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QBJ46420.1|1730540_1731488_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QBJ46421.1|1731471_1732203_+	ABC transporter permease	NA	NA	NA	NA	NA
QBJ46422.1|1732183_1732291_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ46423.1|1732350_1733082_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QBJ46424.1|1733304_1734990_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QBJ46425.1|1734986_1735706_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBJ46426.1|1735752_1736220_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QBJ46427.1|1736276_1736807_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QBJ46428.1|1736978_1737437_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
QBJ46429.1|1737677_1739711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	1894991	1902227	4622297		Morganella_phage(33.33%)	8	NA	NA
QBJ46568.1|1894991_1895411_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QBJ46569.1|1895413_1896682_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.4	1.4e-227
QBJ46570.1|1897136_1897349_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QBJ49133.1|1897359_1897548_+	cold-shock protein	NA	NA	NA	NA	NA
QBJ46571.1|1897808_1898987_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	2.5e-109
QBJ46572.1|1899636_1899936_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ46573.1|1900027_1900723_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
QBJ46574.1|1900796_1902227_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	2009655	2015596	4622297	tail	Salmonella_phage(57.14%)	9	NA	NA
QBJ46689.1|2009655_2010762_-	exodeoxyribonuclease 8	NA	Q9QF34	Lambdoid_phage	66.7	6.7e-56
QBJ46690.1|2010792_2011080_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.9	9.6e-39
QBJ46691.1|2011076_2011610_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
QBJ46692.1|2011643_2011829_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ46693.1|2011878_2012046_-	lytic enzyme	NA	NA	NA	NA	NA
QBJ46694.1|2012348_2012840_+	DUF1441 domain-containing protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
QBJ46695.1|2013392_2014730_+	shikimate transporter	NA	E5G6P0	Salmonella_phage	52.1	3.8e-77
QBJ46696.1|2014701_2015022_+	hypothetical protein	NA	A0A0M4QWS3	Salmonella_phage	79.2	2.9e-44
QBJ46697.1|2015011_2015596_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	80.6	5.8e-83
>prophage 6
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	2644919	2649339	4622297		Escherichia_phage(50.0%)	6	NA	NA
QBJ47305.1|2644919_2645159_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
QBJ49163.1|2646038_2646848_+	cytolethal distending toxin subunit B	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
QBJ47306.1|2646920_2647298_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
QBJ47307.1|2647445_2647988_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	8.1e-71
QBJ47308.1|2648180_2648909_-	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.0	4.6e-61
QBJ47309.1|2648925_2649339_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	3.2e-19
>prophage 7
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	2905435	2980264	4622297	holin,protease,integrase,tail,terminase,head,portal,tRNA,capsid	Cronobacter_phage(60.0%)	84	2949629:2949646	2980339:2980356
QBJ47546.1|2905435_2906140_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBJ47547.1|2906140_2906524_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ47548.1|2906451_2906670_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBJ47549.1|2906760_2907672_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ47550.1|2907780_2908641_+	pirin family protein	NA	NA	NA	NA	NA
QBJ47551.1|2908660_2909338_+	hydrolase	NA	NA	NA	NA	NA
QBJ47552.1|2909947_2912224_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QBJ47553.1|2912254_2912575_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QBJ47554.1|2912898_2913120_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QBJ47555.1|2913249_2915196_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
QBJ47556.1|2915192_2916311_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
QBJ47557.1|2916438_2917407_+	DUF535 domain-containing protein	NA	NA	NA	NA	NA
QBJ47558.1|2917403_2919062_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
QBJ47559.1|2919262_2920162_+	DUF340 domain-containing protein	NA	NA	NA	NA	NA
QBJ47560.1|2920305_2921958_+	hydroxylamine reductase	NA	NA	NA	NA	NA
QBJ47561.1|2921969_2922938_+	NADH oxidoreductase	NA	NA	NA	NA	NA
QBJ47562.1|2923095_2924814_+	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	2.9e-29
QBJ47563.1|2924852_2925854_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
QBJ47564.1|2925864_2927298_+	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
QBJ47565.1|2927393_2928407_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
QBJ47566.1|2928403_2929234_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.7	2.3e-08
QBJ47567.1|2929230_2929554_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ47568.1|2929681_2930197_+	lipoprotein	NA	NA	NA	NA	NA
QBJ47569.1|2930425_2931154_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.8	5.1e-28
QBJ47570.1|2931171_2931903_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ47571.1|2931909_2932626_+	arginine transporter permease subunit ArtQ	NA	NA	NA	NA	NA
QBJ47572.1|2932625_2933294_+	arginine transporter permease subunit ArtM	NA	NA	NA	NA	NA
QBJ47573.1|2933530_2934262_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ47574.1|2934283_2934472_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ47575.1|2934468_2935956_-	sulfatase	NA	NA	NA	NA	NA
QBJ47576.1|2935965_2936286_-	PTS sugar transporter IIB	NA	NA	NA	NA	NA
QBJ47577.1|2936315_2937659_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
QBJ47578.1|2937953_2939081_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	26.0	3.1e-24
QBJ49171.1|2939123_2939597_-	DUF2593 domain-containing protein	NA	NA	NA	NA	NA
QBJ47579.1|2939670_2940516_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
QBJ47580.1|2940512_2941466_-	putrescine ABC transporter permease	NA	NA	NA	NA	NA
QBJ47581.1|2941475_2942609_-	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.9	6.5e-30
QBJ47582.1|2942696_2943809_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
QBJ47583.1|2944157_2944634_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
QBJ47584.1|2944729_2945632_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	34.0	2.6e-34
QBJ47585.1|2945689_2946412_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
QBJ47586.1|2946395_2946686_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ47587.1|2946855_2947119_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	70.5	5.9e-27
QBJ47588.1|2947150_2947528_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ47589.1|2947798_2949484_+	transporter	NA	NA	NA	NA	NA
2949629:2949646	attL	GTGGGTTTTTTGTTGCCT	NA	NA	NA	NA
QBJ49172.1|2949947_2950298_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ47590.1|2950819_2952523_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.1	4.9e-223
QBJ47591.1|2952522_2953068_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	71.4	7.1e-59
QBJ47592.1|2953039_2953765_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
QBJ47593.1|2953754_2954300_-|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	1.2e-87
QBJ47594.1|2954312_2956559_-|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	70.4	3.1e-169
QBJ47595.1|2956568_2957162_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
QBJ47596.1|2957148_2958333_-	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QBJ47597.1|2958329_2958659_-	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QBJ47598.1|2958655_2960626_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	67.4	6.2e-254
QBJ47599.1|2960813_2961071_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QBJ47600.1|2961057_2961246_-	hypothetical protein	NA	F1BUL1	Cronobacter_phage	80.6	1.1e-22
QBJ47601.1|2961217_2961550_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	6.7e-36
QBJ47602.1|2961549_2961891_-	hypothetical protein	NA	F1BUL3	Cronobacter_phage	90.1	8.4e-50
QBJ47603.1|2961887_2962181_-|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QBJ47604.1|2962190_2962646_-	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QBJ47605.1|2962642_2963770_-	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QBJ47606.1|2963766_2964474_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.9	6.8e-102
QBJ47607.1|2964470_2964977_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.8	5.2e-64
QBJ47608.1|2964973_2965477_-|head	head completion protein	head	F1BUL8	Cronobacter_phage	82.0	4.0e-64
QBJ47609.1|2965522_2966224_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	2.7e-87
QBJ47610.1|2966227_2967250_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
QBJ47611.1|2967311_2968112_-|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	54.8	3.2e-76
QBJ47612.1|2968272_2970048_+|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	82.9	6.3e-290
QBJ47613.1|2970044_2971106_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.1	2.3e-162
QBJ47614.1|2971102_2971426_+	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QBJ49173.1|2971399_2971618_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	49.1	2.8e-06
QBJ47615.1|2971731_2973753_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.6	4.7e-297
QBJ47616.1|2973749_2974610_-	adenine methylase	NA	F1BUN1	Cronobacter_phage	83.8	2.4e-133
QBJ47617.1|2974600_2974831_-	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
QBJ47618.1|2974898_2975300_-	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QBJ47619.1|2975299_2975725_-	hypothetical protein	NA	F1BUN5	Cronobacter_phage	50.4	7.6e-24
QBJ47620.1|2975714_2975942_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ47621.1|2975951_2976455_-	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QBJ47622.1|2976487_2976709_-	regulator	NA	NA	NA	NA	NA
QBJ47623.1|2976801_2977395_+	phage repressor protein	NA	F1BUN8	Cronobacter_phage	35.5	1.3e-29
QBJ47624.1|2977410_2978439_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ47625.1|2978435_2979116_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ47626.1|2979211_2980264_+|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	55.8	1.7e-104
2980339:2980356	attR	GTGGGTTTTTTGTTGCCT	NA	NA	NA	NA
>prophage 8
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	3503084	3571353	4622297	transposase,plate	Bluetongue_virus(50.0%)	52	NA	NA
QBJ48104.1|3503084_3504293_+|transposase	IS4 family transposase ISVsa5	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
QBJ48105.1|3504423_3504612_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49195.1|3504724_3504919_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ48106.1|3505385_3506003_-	TioA protein	NA	NA	NA	NA	NA
QBJ48107.1|3506142_3506598_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ49196.1|3506730_3507777_-	fimbrial protein TcfD	NA	NA	NA	NA	NA
QBJ48108.1|3510606_3511182_-	fimbrial protein	NA	NA	NA	NA	NA
QBJ48109.1|3511232_3511943_-	fimbrial protein	NA	NA	NA	NA	NA
QBJ48110.1|3511965_3512145_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48111.1|3513836_3513962_-	cytoplasmic protein	NA	NA	NA	NA	NA
QBJ48112.1|3514081_3515029_-	transcriptional regulator	NA	NA	NA	NA	NA
QBJ48113.1|3515504_3515765_-	transcriptional activator PerC	NA	NA	NA	NA	NA
QBJ48114.1|3515844_3516666_-	carbohydrate transporter	NA	NA	NA	NA	NA
QBJ48115.1|3517072_3517543_-	pilin structural protein SafD	NA	NA	NA	NA	NA
QBJ48116.1|3517564_3520075_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
QBJ48117.1|3520918_3521413_-	pilus assembly protein	NA	NA	NA	NA	NA
QBJ48118.1|3522930_3523245_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
QBJ49197.1|3523311_3523590_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48119.1|3523907_3524375_-	sugar tyrosine-protein kinase	NA	NA	NA	NA	NA
QBJ48120.1|3525047_3525188_-	type IV secretion protein Rhs	NA	NA	NA	NA	NA
QBJ48121.1|3526158_3526536_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48122.1|3527949_3528375_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49198.1|3528391_3531223_-	type IV secretion protein Rhs	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	39.3	5.0e-31
QBJ48123.1|3533107_3533566_-	DUF1795 domain-containing protein	NA	NA	NA	NA	NA
QBJ48124.1|3534128_3535337_+|transposase	IS4 family transposase ISVsa5	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
QBJ48125.1|3537594_3538116_-	DUF2778 domain-containing protein	NA	NA	NA	NA	NA
QBJ48126.1|3538139_3538556_-	DUF2195 domain-containing protein	NA	NA	NA	NA	NA
QBJ48127.1|3540116_3540551_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48128.1|3540540_3545040_-	sugar-binding protein	NA	NA	NA	NA	NA
QBJ48129.1|3545070_3545502_-	DUF1795 domain-containing protein	NA	NA	NA	NA	NA
QBJ48130.1|3545532_3547749_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
QBJ48131.1|3547780_3548242_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48132.1|3548243_3548945_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48133.1|3549071_3549533_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48134.1|3549517_3549988_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48135.1|3550030_3550798_-	DUF2094 domain-containing protein	NA	NA	NA	NA	NA
QBJ48136.1|3555076_3555304_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ48137.1|3555310_3556084_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48138.1|3556088_3557393_-	type VI secretion system protein TssL	NA	NA	NA	NA	NA
QBJ48139.1|3557389_3558733_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
QBJ49199.1|3558736_3559273_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
QBJ48140.1|3559339_3559825_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
QBJ49200.1|3560078_3560411_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48141.1|3560711_3562220_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
QBJ48142.1|3562243_3562786_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
QBJ48143.1|3562849_3563140_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48144.1|3563225_3565889_-	type VI secretion system ATPase TssH	NA	A0A2I7SAX5	Vibrio_phage	34.5	1.2e-77
QBJ48145.1|3566257_3567160_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
QBJ48146.1|3567146_3567971_+	impE family protein	NA	NA	NA	NA	NA
QBJ48147.1|3567967_3568462_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
QBJ48148.1|3568477_3570361_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
QBJ48149.1|3570357_3571353_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 9
CP025276	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 chromosome, complete genome	4622297	4382198	4471075	4622297	holin,integrase,tail,terminase,head,portal,tRNA,transposase,capsid	Cronobacter_phage(51.35%)	99	4409366:4409410	4439410:4439454
QBJ48840.1|4382198_4383454_-|transposase	transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
QBJ48841.1|4383555_4383768_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
QBJ48842.1|4383971_4386170_+	primosomal protein N'	NA	NA	NA	NA	NA
QBJ48843.1|4386324_4387350_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
QBJ48844.1|4387443_4388427_+	cell division protein FtsN	NA	NA	NA	NA	NA
QBJ48845.1|4388518_4389049_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
QBJ48846.1|4389058_4390390_+	HslU--HslV peptidase ATPase subunit	NA	W6AS21	Erwinia_phage	28.3	2.4e-44
QBJ48847.1|4390456_4391386_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
QBJ48848.1|4391478_4391964_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
QBJ48849.1|4392185_4392425_-	cell division protein ZapB	NA	NA	NA	NA	NA
QBJ48850.1|4392823_4393669_+	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	28.6	2.0e-15
QBJ48851.1|4393689_4395198_+	glycerol kinase	NA	NA	NA	NA	NA
QBJ48852.1|4395309_4396320_+	fructose-bisphosphatase class II	NA	NA	NA	NA	NA
QBJ48853.1|4396416_4397163_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
QBJ48854.1|4397269_4397698_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
QBJ48855.1|4397798_4398395_+	DUF1454 domain-containing protein	NA	NA	NA	NA	NA
QBJ48856.1|4398507_4399275_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
QBJ48857.1|4399384_4400689_-	citrate transporter	NA	NA	NA	NA	NA
QBJ49232.1|4400786_4401509_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ48858.1|4401571_4402612_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA	NA
QBJ48859.1|4402621_4403581_-	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
QBJ48860.1|4403591_4404926_-	MFS transporter	NA	NA	NA	NA	NA
QBJ48861.1|4405188_4405944_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA	NA
QBJ48862.1|4406044_4407034_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ48863.1|4407237_4408200_-	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBJ48864.1|4408384_4409287_-	cation-efflux pump FieF	NA	NA	NA	NA	NA
4409366:4409410	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTG	NA	NA	NA	NA
QBJ48865.1|4410074_4411799_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	63.0	1.3e-175
QBJ48866.1|4411806_4412349_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	56.0	7.1e-43
QBJ48867.1|4412320_4413043_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	40.3	1.5e-40
QBJ48868.1|4413032_4413620_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	55.5	1.0e-58
QBJ48869.1|4413619_4415566_-|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	67.8	1.1e-122
QBJ48870.1|4415577_4416171_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	63.8	4.7e-72
QBJ48871.1|4416163_4417348_-	hypothetical protein	NA	F1BUK6	Cronobacter_phage	69.2	1.2e-154
QBJ48872.1|4417340_4417676_-	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	57.7	3.6e-29
QBJ48873.1|4417672_4419787_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	41.4	4.5e-141
QBJ48874.1|4419788_4419968_-	hypothetical protein	NA	A5X9I8	Aeromonas_virus	63.0	6.4e-09
QBJ48875.1|4419976_4420246_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48876.1|4420242_4420440_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48877.1|4420348_4420732_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	38.5	1.2e-12
QBJ48878.1|4420731_4421070_-	hypothetical protein	NA	F1BUL3	Cronobacter_phage	86.1	6.2e-45
QBJ48879.1|4421056_4421368_-|holin	holin	holin	NA	NA	NA	NA
QBJ48880.1|4421372_4421828_-	DUF2597 domain-containing protein	NA	A5X9I1	Aeromonas_virus	52.3	1.5e-38
QBJ48881.1|4421831_4422974_-	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	61.6	1.9e-130
QBJ48882.1|4422976_4423672_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.3	1.4e-70
QBJ48883.1|4423668_4424145_-|tail	phage tail protein	tail	NA	NA	NA	NA
QBJ48884.1|4424141_4424615_-|head	head completion protein	head	F1BUL8	Cronobacter_phage	54.3	1.6e-30
QBJ48885.1|4424717_4425419_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	57.1	3.4e-69
QBJ48886.1|4425421_4426444_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	56.1	2.8e-96
QBJ48887.1|4426472_4427534_-|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	45.3	7.7e-33
QBJ48888.1|4427710_4429522_+	hypothetical protein	NA	F1BUM5	Cronobacter_phage	54.5	1.9e-185
QBJ48889.1|4429518_4430580_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	60.7	5.2e-122
QBJ48890.1|4430627_4430903_+	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	57.3	3.1e-26
QBJ48891.1|4430929_4431622_-	DNA methylase	NA	A0A0M4S5U3	Salmonella_phage	69.1	3.9e-86
QBJ48892.1|4431711_4431912_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48893.1|4432016_4434653_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	37.9	3.5e-127
QBJ48894.1|4434645_4435569_-	DNA cytosine methyltransferase	NA	Q6J1P4	Burkholderia_virus	54.5	1.2e-93
QBJ48895.1|4435565_4435793_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48896.1|4435792_4436776_-	adenine methylase	NA	A0A0M4QWR0	Salmonella_phage	61.0	5.9e-104
QBJ48897.1|4436846_4437230_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49233.1|4437251_4437476_-	hypothetical protein	NA	A0A0M4S6M9	Salmonella_phage	50.0	2.3e-11
QBJ48898.1|4437478_4437751_-	hypothetical protein	NA	Q1JS20	Enterobacteria_phage	85.6	1.3e-40
QBJ48899.1|4437945_4438239_+	XRE family transcriptional regulator	NA	Q1JS21	Enterobacteria_phage	77.3	2.0e-36
QBJ48900.1|4438308_4439289_+|integrase	integrase	integrase	Q7Y4C5	Escherichia_virus	84.7	3.4e-160
QBJ48901.1|4439478_4439979_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
4439410:4439454	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTG	NA	NA	NA	NA
QBJ48902.1|4440129_4440828_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QBJ48903.1|4440824_4442198_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
QBJ48904.1|4442248_4442644_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
QBJ48905.1|4442655_4443408_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
QBJ48906.1|4443414_4444035_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
QBJ48907.1|4444363_4445347_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ48908.1|4445365_4445881_+	TRAP transporter small permease	NA	NA	NA	NA	NA
QBJ48909.1|4445873_4447181_+	TRAP transporter large permease	NA	NA	NA	NA	NA
QBJ48910.1|4447338_4448022_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ48911.1|4448640_4449675_+	rhamnose/proton symporter RhaT	NA	NA	NA	NA	NA
QBJ48912.1|4449671_4450520_-	HTH-type transcriptional activator RhaR	NA	NA	NA	NA	NA
QBJ48913.1|4450542_4450725_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ48914.1|4450672_4451509_-	HTH-type transcriptional activator RhaS	NA	NA	NA	NA	NA
QBJ48915.1|4451796_4453266_+	rhamnulokinase	NA	NA	NA	NA	NA
QBJ48916.1|4453262_4454522_+	L-rhamnose isomerase	NA	NA	NA	NA	NA
QBJ48917.1|4454664_4455492_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
QBJ48918.1|4455618_4456767_+	lactaldehyde reductase	NA	NA	NA	NA	NA
QBJ48919.1|4456763_4457078_+	L-rhamnose mutarotase	NA	NA	NA	NA	NA
QBJ49234.1|4457166_4457733_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBJ48920.1|4457815_4458475_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBJ48921.1|4458474_4458798_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
QBJ48922.1|4459153_4460254_-	DUF3829 domain-containing protein	NA	NA	NA	NA	NA
QBJ48923.1|4460446_4461283_-	sulfurtransferase FdhD	NA	NA	NA	NA	NA
QBJ48924.1|4461477_4462065_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ48925.1|4462113_4464528_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA	NA
QBJ48926.1|4464540_4465443_+	formate dehydrogenase subunit beta	NA	NA	NA	NA	NA
QBJ48927.1|4465439_4466075_+	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA	NA
QBJ48928.1|4466071_4467001_+	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA	NA
QBJ49235.1|4467047_4467302_-	transcriptional regulator	NA	NA	NA	NA	NA
QBJ48929.1|4467338_4467650_-	toxin HigB-2	NA	NA	NA	NA	NA
QBJ48930.1|4467867_4468797_+	alpha/beta hydrolase	NA	A0A2K9L5W3	Tupanvirus	44.4	4.4e-08
QBJ48931.1|4468882_4469194_+	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA	NA
QBJ48932.1|4469190_4469637_+	type II toxin-antitoxin system HigA family antitoxin	NA	NA	NA	NA	NA
QBJ48933.1|4469651_4470641_-	acetyltransferase	NA	NA	NA	NA	NA
QBJ48934.1|4470637_4471075_-|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
>prophage 1
CP025277	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60984 plasmid pSJO-60984, complete sequence	266480	97018	118005	266480	integrase,transposase	Salmonella_phage(28.57%)	30	95913:95928	114489:114504
95913:95928	attL	TCAGGAAAGTTACTTT	NA	NA	NA	NA
QBJ49332.1|97018_99991_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.1	0.0e+00
QBJ49333.1|99993_100551_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	5.8e-48
QBJ49334.1|100588_100912_-|transposase	transposase	transposase	NA	NA	NA	NA
QBJ49335.1|100856_101870_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	6.1e-72
QBJ49513.1|102015_102813_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA13	NA	NA	NA	NA	NA
QBJ49336.1|103289_103637_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QBJ49337.1|103630_104470_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QBJ49338.1|104399_104579_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49339.1|104597_105098_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBJ49340.1|105403_105517_-	NTP-binding protein	NA	NA	NA	NA	NA
QBJ49341.1|105604_106369_+|transposase	IS6 family transposase IS6100	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
QBJ49342.1|106451_107156_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBJ49343.1|107880_108057_+	resolvase	NA	NA	NA	NA	NA
QBJ49344.1|108076_108289_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QBJ49514.1|108251_108371_+	mercury resistance protein	NA	NA	NA	NA	NA
QBJ49345.1|108354_108591_-	mercury resistance protein	NA	NA	NA	NA	NA
QBJ49346.1|108587_108953_-	transcriptional regulator	NA	NA	NA	NA	NA
QBJ49347.1|108970_110656_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
QBJ49348.1|110694_111120_-	mercury transport protein MerC	NA	NA	NA	NA	NA
QBJ49349.1|111147_111423_-	mercuric transporter periplasmic component	NA	NA	NA	NA	NA
QBJ49350.1|111438_111804_-	mercuric transport protein	NA	NA	NA	NA	NA
QBJ49351.1|111875_112331_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
QBJ49352.1|113066_113270_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ49353.1|113611_114016_-	DNA-binding protein	NA	NA	NA	NA	NA
QBJ49354.1|114193_114487_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49355.1|114512_114749_-	hypothetical protein	NA	NA	NA	NA	NA
114489:114504	attR	AAAGTAACTTTCCTGA	NA	NA	NA	NA
QBJ49356.1|114789_115245_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49357.1|115304_115970_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49358.1|116027_116408_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ49359.1|117162_118005_+|transposase	transposase	transposase	NA	NA	NA	NA
