The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	678735	723886	4899128	terminase,tail,capsid,tRNA,holin,head,portal,integrase	Cronobacter_phage(66.67%)	53	672801:672821	722601:722621
672801:672821	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
QBJ40496.1|678735_680301_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.7e-12
QBJ40497.1|680297_680945_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ40498.1|681176_681944_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QBJ40499.1|682201_683983_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
QBJ40500.1|683972_685010_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
QBJ40501.1|685013_685580_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.2	7.5e-19
QBJ40502.1|685596_686178_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
QBJ40503.1|686321_686543_+	regulator	NA	NA	NA	NA	NA
QBJ40504.1|686573_687077_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QBJ40505.1|687086_687314_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ40506.1|687303_687729_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QBJ40507.1|687728_688130_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QBJ40508.1|688197_688431_+	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
QBJ40509.1|688421_689282_+	adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
QBJ40510.1|689278_691300_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
QBJ40511.1|691419_691626_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ40512.1|691599_691923_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QBJ40513.1|691919_692981_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
QBJ40514.1|692977_694753_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QBJ40515.1|694913_695717_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QBJ40516.1|695778_696801_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QBJ40517.1|696804_697506_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QBJ40518.1|697551_698055_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QBJ40519.1|698051_698558_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QBJ40520.1|698554_699262_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
QBJ40521.1|699258_700386_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QBJ40522.1|700382_700838_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QBJ40523.1|700847_701141_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QBJ40524.1|701137_701479_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QBJ40525.1|701478_701811_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
QBJ40526.1|701782_701971_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
QBJ40527.1|701957_702215_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QBJ40528.1|702402_704373_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
QBJ40529.1|704369_704699_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QBJ40530.1|704695_705880_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QBJ40531.1|705866_706460_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QBJ40532.1|706469_708704_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
QBJ40533.1|708716_709271_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
QBJ40534.1|709260_709986_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
QBJ40535.1|709957_710503_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QBJ40536.1|710502_712206_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
QBJ40537.1|712986_713172_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ40538.1|713279_713906_+	reverse transcriptase	NA	NA	NA	NA	NA
QBJ40539.1|714229_714736_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QBJ40540.1|714859_716842_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
QBJ40541.1|716856_718602_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QBJ40542.1|718837_719053_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QBJ40543.1|719280_720294_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QBJ40544.1|720197_720536_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ40545.1|720543_721155_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
QBJ40546.1|721261_721621_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QBJ40547.1|721718_722540_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QBJ40548.1|722644_723886_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.9	6.5e-92
722601:722621	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
>prophage 2
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	1202917	1267174	4899128	tail,capsid,tRNA,head,portal,plate,integrase	Salmonella_phage(88.89%)	67	1204293:1204340	1238492:1238539
QBJ41012.1|1202917_1204111_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.6	2.6e-106
1204293:1204340	attL	ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
QBJ41013.1|1204455_1205682_-	hypothetical protein	NA	E5G6K9	Salmonella_phage	65.4	3.6e-151
QBJ41014.1|1205688_1206705_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	95.0	5.0e-191
QBJ41015.1|1206706_1207339_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	96.7	5.8e-113
QBJ41016.1|1207458_1207701_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
QBJ41017.1|1207733_1208243_+	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	93.5	3.5e-84
QBJ41018.1|1208329_1208605_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44526.1|1208689_1208884_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	84.1	5.3e-25
QBJ41019.1|1208847_1209189_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	84.1	6.0e-48
QBJ41020.1|1209256_1209484_+	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	64.0	8.1e-17
QBJ41021.1|1209483_1209711_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	66.7	5.4e-21
QBJ41022.1|1209707_1210565_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	69.8	4.6e-113
QBJ41023.1|1210561_1212955_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	88.8	0.0e+00
QBJ41024.1|1212974_1213202_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41025.1|1213339_1213528_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	91.7	5.7e-24
QBJ41026.1|1213858_1215061_+	DNA (cytosine-5-)-methyltransferase	NA	M1PSQ0	Streptococcus_phage	37.1	5.6e-64
QBJ41027.1|1215023_1215941_+	restriction endonuclease	NA	NA	NA	NA	NA
QBJ41028.1|1215987_1217022_-|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	94.8	4.1e-188
QBJ41029.1|1217021_1218788_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	96.6	0.0e+00
QBJ41030.1|1218930_1219764_+|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	97.1	1.1e-127
QBJ41031.1|1219780_1220848_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.0	2.8e-192
QBJ41032.1|1220851_1221502_+	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.6	1.6e-113
QBJ41033.1|1221595_1222060_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	96.8	7.9e-83
QBJ41034.1|1222059_1222263_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
QBJ41035.1|1222266_1222482_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
QBJ41036.1|1222462_1222972_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.6	3.2e-93
QBJ41037.1|1222976_1223351_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41038.1|1223347_1223776_+	hypothetical protein	NA	A0A1S6KZX8	Salmonella_phage	95.0	2.6e-64
QBJ41039.1|1223871_1224303_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	95.1	4.0e-73
QBJ41040.1|1224295_1224742_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.7	3.8e-66
QBJ41041.1|1224810_1225389_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.0	1.5e-107
QBJ41042.1|1225385_1225745_+|plate	baseplate assembly protein	plate	E5G6N7	Salmonella_phage	92.4	6.3e-56
QBJ41043.1|1225731_1226640_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.7	7.2e-157
QBJ41044.1|1226632_1227238_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.5	1.1e-116
QBJ41045.1|1227234_1229043_+	hypothetical protein	NA	A0A1B0V7G4	Salmonella_phage	82.2	7.3e-209
QBJ41046.1|1229049_1229457_+|tail	phage tail protein	tail	A0A1B0V844	Salmonella_phage	85.2	6.7e-62
QBJ41047.1|1229460_1230078_-|tail	tail assembly chaperone	tail	A0A1B0VCD0	Salmonella_phage	84.1	1.6e-94
QBJ41048.1|1230047_1230893_-	hypothetical protein	NA	A0A1B0VFW4	Salmonella_phage	84.4	1.1e-114
QBJ41049.1|1230862_1231420_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	98.9	9.4e-99
QBJ41050.1|1231522_1232695_+|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	3.7e-222
QBJ41051.1|1232704_1233220_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
QBJ41052.1|1233274_1233577_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
QBJ41053.1|1233591_1233711_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
QBJ41054.1|1233703_1236511_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	98.3	0.0e+00
QBJ41055.1|1236507_1236993_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
QBJ41056.1|1236989_1238090_+	late control protein D	NA	E5G6Q3	Salmonella_phage	95.6	9.0e-194
QBJ41057.1|1238158_1238377_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
QBJ44527.1|1238928_1240092_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
1238492:1238539	attR	ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
QBJ41058.1|1240099_1242280_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
QBJ41059.1|1242276_1243686_-	type I secretion protein TolC	NA	NA	NA	NA	NA
QBJ41060.1|1243750_1254916_-	Ig-like domain repeat protein	NA	NA	NA	NA	NA
QBJ44528.1|1255529_1256012_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
QBJ41061.1|1256161_1256638_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
QBJ41062.1|1256627_1256918_+	RnfH family protein	NA	NA	NA	NA	NA
QBJ41063.1|1257083_1257422_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QBJ41064.1|1257570_1259232_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QBJ41065.1|1259317_1260196_-	NAD(+) kinase	NA	NA	NA	NA	NA
QBJ44529.1|1260127_1260322_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
QBJ41066.1|1260318_1260909_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QBJ41067.1|1260943_1261549_-	cytoplasmic protein	NA	NA	NA	NA	NA
QBJ41068.1|1261669_1262911_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
QBJ41069.1|1262975_1263767_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QBJ41070.1|1263712_1264009_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41071.1|1263932_1265294_+	signal recognition particle protein	NA	NA	NA	NA	NA
QBJ41072.1|1265546_1265795_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QBJ44530.1|1265813_1266362_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QBJ41073.1|1266406_1267174_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 3
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	1294178	1370924	4899128	terminase,tail,head,transposase,protease,tRNA,capsid,lysis,holin,portal,integrase	Salmonella_phage(37.93%)	94	1286259:1286275	1376771:1376787
1286259:1286275	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QBJ41095.1|1294178_1295216_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QBJ41096.1|1295331_1296021_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QBJ41097.1|1296339_1296723_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QBJ41098.1|1296784_1297372_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QBJ44532.1|1297474_1298374_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ41099.1|1298391_1299726_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QBJ41100.1|1299855_1300593_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
QBJ41101.1|1300577_1302200_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QBJ41102.1|1302284_1302464_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41103.1|1302624_1303200_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QBJ41104.1|1303231_1303882_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QBJ41105.1|1303881_1304838_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QBJ41106.1|1304834_1305314_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
QBJ41107.1|1305343_1305460_+	transcriptional regulator	NA	NA	NA	NA	NA
QBJ41108.1|1305811_1307041_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
QBJ41109.1|1307018_1307303_-	excisionase	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QBJ41110.1|1307343_1307583_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QBJ41111.1|1307625_1308783_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QBJ41112.1|1308745_1311673_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
QBJ41113.1|1311799_1312150_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QBJ41114.1|1312171_1312330_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QBJ41115.1|1312786_1313449_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41116.1|1313448_1313835_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41117.1|1313827_1314667_-	chromosome partitioning protein ParA	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QBJ41118.1|1314725_1315121_-	transcriptional regulator	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QBJ41119.1|1315220_1315463_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QBJ41120.1|1315422_1315797_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
QBJ41121.1|1315888_1316773_+	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
QBJ41122.1|1316769_1317465_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QBJ41123.1|1317478_1318177_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QBJ41124.1|1318284_1318917_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41125.1|1319159_1319393_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QBJ41126.1|1319509_1319758_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QBJ41127.1|1319792_1320395_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QBJ41128.1|1320394_1320601_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QBJ41129.1|1320603_1321215_+	protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.5	1.8e-90
QBJ41130.1|1321211_1321352_+	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QBJ41131.1|1321348_1322026_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QBJ41132.1|1322022_1322208_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41133.1|1322298_1322862_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QBJ41134.1|1323368_1323557_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41135.1|1323771_1324458_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QBJ44533.1|1324733_1325063_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QBJ41136.1|1325046_1325499_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QBJ44534.1|1325516_1325969_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QBJ41137.1|1326204_1326606_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QBJ41138.1|1326640_1326835_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41139.1|1326892_1327438_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QBJ41140.1|1327409_1329341_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QBJ41141.1|1329324_1329528_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QBJ41142.1|1329524_1331105_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QBJ41143.1|1331094_1332591_+	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QBJ41144.1|1332603_1332951_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QBJ41145.1|1333005_1334034_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QBJ41146.1|1334091_1334451_+	DNA packaging protein	NA	NA	NA	NA	NA
QBJ41147.1|1334461_1334845_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QBJ41148.1|1334872_1335451_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QBJ41149.1|1335499_1336750_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
QBJ41150.1|1336738_1337140_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QBJ41151.1|1337147_1337894_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QBJ41152.1|1337944_1338340_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QBJ41153.1|1338336_1338675_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QBJ41154.1|1338646_1341742_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
QBJ41155.1|1341744_1342074_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QBJ41156.1|1342083_1342782_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QBJ41157.1|1342788_1343526_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QBJ41158.1|1343423_1344071_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QBJ41159.1|1344132_1347495_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QBJ41160.1|1347533_1347776_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41161.1|1347829_1350202_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QBJ41162.1|1350198_1351023_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QBJ41163.1|1351012_1351591_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QBJ41164.1|1351687_1351915_-	phage virulence factor	NA	NA	NA	NA	NA
QBJ41165.1|1352021_1352234_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QBJ44535.1|1352296_1352362_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41166.1|1353026_1353572_-|transposase	transposase	transposase	NA	NA	NA	NA
QBJ41167.1|1353818_1353956_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41168.1|1354446_1355940_-	type III secretion system protein	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QBJ41169.1|1356344_1358144_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QBJ41170.1|1358160_1359135_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QBJ41171.1|1359408_1360089_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QBJ41172.1|1360085_1360991_+	GTPase Era	NA	NA	NA	NA	NA
QBJ41173.1|1361002_1361731_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QBJ41174.1|1361742_1362474_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QBJ41175.1|1362473_1362854_+	holo-ACP synthase	NA	NA	NA	NA	NA
QBJ41176.1|1362965_1363226_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
QBJ41177.1|1363263_1364190_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	1.8e-09
QBJ41178.1|1364305_1365502_+	MFS transporter	NA	NA	NA	NA	NA
QBJ41179.1|1365523_1366441_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
QBJ41180.1|1366479_1367328_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ41181.1|1367443_1368337_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QBJ41182.1|1368347_1369709_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QBJ41183.1|1369712_1370348_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QBJ41184.1|1370372_1370924_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1376771:1376787	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 4
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	1814832	1824003	4899128	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QBJ41583.1|1814832_1815780_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
QBJ41584.1|1815763_1816495_+	ABC transporter permease	NA	NA	NA	NA	NA
QBJ41585.1|1816475_1816583_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41586.1|1816642_1817374_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QBJ41587.1|1817596_1819282_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QBJ41588.1|1819278_1819998_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBJ41589.1|1820044_1820512_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QBJ41590.1|1820568_1821099_-	lipoprotein	NA	NA	NA	NA	NA
QBJ41591.1|1821270_1821729_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QBJ41592.1|1821969_1824003_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 5
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	1892094	1902601	4899128		Enterobacteria_phage(37.5%)	10	NA	NA
QBJ41647.1|1892094_1893498_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
QBJ41648.1|1893675_1894569_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QBJ41649.1|1894945_1896031_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QBJ41650.1|1896030_1896930_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QBJ44551.1|1896977_1897856_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
QBJ41651.1|1897856_1898408_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
QBJ41652.1|1898413_1899388_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QBJ41653.1|1899403_1900177_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QBJ41654.1|1900181_1901261_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
QBJ41655.1|1901287_1902601_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 6
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	1995733	2006383	4899128		Morganella_phage(25.0%)	13	NA	NA
QBJ41745.1|1995733_1996258_-	peptidase	NA	G9L6C4	Escherichia_phage	77.7	1.3e-36
QBJ41746.1|1996904_1997195_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	50.9	1.0e-08
QBJ41747.1|1997566_1998364_-	protein MtfA	NA	NA	NA	NA	NA
QBJ41748.1|1998844_1999006_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41749.1|1999132_1999552_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QBJ41750.1|1999554_2000823_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
QBJ41751.1|2001277_2001490_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QBJ44558.1|2001500_2001689_+	cold-shock protein	NA	NA	NA	NA	NA
QBJ41752.1|2001946_2003143_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	5.1e-110
QBJ41753.1|2003154_2003355_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41754.1|2003792_2004104_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41755.1|2004183_2004879_+	phosphohydrolase	NA	S4W232	Pandoravirus	28.0	2.8e-07
QBJ41756.1|2004952_2006383_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	2111421	2146538	4899128	tail,protease,integrase	Salmonella_phage(25.0%)	37	2113179:2113194	2128212:2128227
QBJ41870.1|2111421_2112501_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	8.7e-101
2113179:2113194	attL	CACTTCTTCTTTTTCA	NA	NA	NA	NA
QBJ41871.1|2113634_2113922_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	92.7	8.1e-38
QBJ41872.1|2114709_2114877_-	lytic enzyme	NA	NA	NA	NA	NA
QBJ41873.1|2114941_2115130_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41874.1|2115602_2116484_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	74.9	1.4e-64
QBJ41875.1|2116580_2116781_-	phage virulence factor	NA	NA	NA	NA	NA
QBJ41876.1|2116982_2117087_-|tail	phage tail protein	tail	NA	NA	NA	NA
QBJ41877.1|2117349_2117475_+	arsenic transporter	NA	NA	NA	NA	NA
QBJ41878.1|2117603_2117870_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41879.1|2118622_2119237_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
QBJ41880.1|2119246_2119405_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41881.1|2119537_2120452_-	protein PagO	NA	NA	NA	NA	NA
QBJ44563.1|2121069_2121270_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41882.1|2121560_2121809_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41883.1|2121746_2122115_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
QBJ41884.1|2123578_2123719_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41885.1|2123883_2124153_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
QBJ41886.1|2124199_2124394_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41887.1|2124522_2124942_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBJ41888.1|2128014_2129028_-	acyltransferase	NA	NA	NA	NA	NA
2128212:2128227	attR	TGAAAAAGAAGAAGTG	NA	NA	NA	NA
QBJ41889.1|2129724_2129928_-	fimbrial protein	NA	NA	NA	NA	NA
QBJ41890.1|2130111_2130396_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41891.1|2131555_2131765_+	chemotaxis protein	NA	NA	NA	NA	NA
QBJ41892.1|2131992_2132469_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ41893.1|2132784_2133180_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
QBJ41894.1|2133863_2134586_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
QBJ41895.1|2134870_2135035_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ41896.1|2135258_2135909_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	2.7e-57
QBJ41897.1|2135927_2136119_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
QBJ41898.1|2136229_2136469_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
QBJ44564.1|2136583_2138023_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
QBJ41899.1|2138100_2140740_-	MCE family protein	NA	NA	NA	NA	NA
QBJ41900.1|2140702_2141986_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QBJ41901.1|2142027_2142612_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
QBJ41902.1|2142709_2143396_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
QBJ41903.1|2143415_2145464_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
QBJ41904.1|2145656_2146538_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 8
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	2904487	3032723	4899128	terminase,tail,protease,tRNA,lysis,head,holin,portal,integrase	Salmonella_phage(51.89%)	158	2972080:2972099	3043875:3043894
QBJ44597.1|2904487_2904808_-	hypothetical protein	NA	E5G6P3	Salmonella_phage	76.6	1.2e-08
QBJ42657.1|2905025_2905901_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA	NA
QBJ42658.1|2906122_2906803_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	9.8e-82
QBJ42659.1|2907191_2907458_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	78.4	7.3e-33
QBJ42660.1|2907514_2908162_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44598.1|2908204_2908402_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	97.0	1.4e-09
QBJ42661.1|2909027_2909420_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	8.5e-14
QBJ42662.1|2909529_2910138_-	DUF4376 domain-containing protein	NA	S5MBX6	Escherichia_phage	44.7	1.1e-31
QBJ42663.1|2910200_2910386_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42664.1|2910634_2911153_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	53.8	2.0e-47
QBJ42665.1|2911167_2912700_-|tail	phage tail protein	tail	S4TP62	Salmonella_phage	66.2	1.4e-128
QBJ42666.1|2912699_2913380_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.0	5.5e-125
QBJ42667.1|2913376_2914576_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	5.5e-213
QBJ42668.1|2914576_2914930_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	95.7	3.0e-58
QBJ42669.1|2914929_2915682_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	69.8	9.7e-91
QBJ42670.1|2915800_2916256_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42671.1|2916339_2916672_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
QBJ42672.1|2916668_2917736_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.5	2.0e-174
QBJ42673.1|2917738_2918041_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
QBJ42674.1|2918040_2918616_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
QBJ42675.1|2918615_2920625_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	95.2	0.0e+00
QBJ44599.1|2920614_2920791_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
QBJ42676.1|2920802_2921255_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	78.7	1.3e-61
QBJ42677.1|2921258_2921702_-	DUF3277 domain-containing protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	1.0e-55
QBJ42678.1|2921714_2922860_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.3	1.2e-164
QBJ42679.1|2922863_2923427_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	78.7	2.1e-82
QBJ42680.1|2923401_2923791_-|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	98.4	2.1e-68
QBJ42681.1|2923777_2924332_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.4e-94
QBJ42682.1|2924328_2924736_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	3.0e-70
QBJ42683.1|2924701_2925091_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	62.0	4.0e-32
QBJ42684.1|2925132_2926074_-	hypothetical protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	3.1e-179
QBJ42685.1|2926085_2926583_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
QBJ42686.1|2926587_2927820_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.3	3.7e-228
QBJ44600.1|2927823_2928363_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	91.0	4.5e-82
QBJ42687.1|2928454_2929924_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.3e-280
QBJ42688.1|2929923_2931546_-	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
QBJ42689.1|2931548_2932178_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	1.5e-108
QBJ44601.1|2932678_2933134_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	76.8	1.3e-53
QBJ42690.1|2933451_2933991_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	74.1	4.0e-78
QBJ44602.1|2933968_2934271_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBJ42691.1|2934473_2934662_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42692.1|2935054_2935633_-	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
QBJ42693.1|2935629_2935923_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
QBJ42694.1|2935919_2936516_-	DUF1367 domain-containing protein	NA	H9C173	Pectobacterium_phage	73.7	1.5e-81
QBJ42695.1|2936584_2936776_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42696.1|2936959_2937298_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
QBJ42697.1|2937297_2937468_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
QBJ42698.1|2937464_2938067_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
QBJ42699.1|2938059_2938308_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42700.1|2938311_2938992_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42701.1|2939029_2940418_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	1.2e-105
QBJ42702.1|2940414_2941395_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	80.6	2.3e-44
QBJ42703.1|2941397_2941622_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
QBJ42704.1|2941644_2942091_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
QBJ44603.1|2942025_2942241_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42705.1|2942155_2942389_-	XRE family transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	48.6	6.2e-12
QBJ42706.1|2942487_2942952_+	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	51.7	2.7e-35
QBJ42707.1|2943636_2943960_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42708.1|2943967_2944213_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
QBJ42709.1|2944242_2946507_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.7	1.5e-102
QBJ42710.1|2946503_2947058_+	hypothetical protein	NA	H9C156	Pectobacterium_phage	59.3	1.3e-47
QBJ42711.1|2947060_2947243_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42712.1|2947292_2947490_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
QBJ42713.1|2947455_2947680_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
QBJ42714.1|2947680_2948700_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	1.2e-91
QBJ42715.1|2949287_2949947_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
QBJ42716.1|2950033_2950363_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QBJ42717.1|2950359_2950641_-	acylphosphatase	NA	NA	NA	NA	NA
QBJ42718.1|2950689_2951469_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ42719.1|2951494_2952043_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QBJ42720.1|2952257_2953469_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QBJ42721.1|2953526_2953844_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QBJ42722.1|2953888_2954305_-	CoA-binding protein	NA	NA	NA	NA	NA
QBJ42723.1|2954475_2955138_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
QBJ42724.1|2955232_2955691_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QBJ42725.1|2955726_2957781_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	1.1e-19
QBJ42726.1|2957904_2958351_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QBJ42727.1|2958369_2960523_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QBJ42728.1|2960509_2961115_-	DNA transformation protein	NA	NA	NA	NA	NA
QBJ42729.1|2961331_2961841_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QBJ42730.1|2962197_2963250_+	porin OmpA	NA	NA	NA	NA	NA
QBJ42731.1|2963321_2963774_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QBJ42732.1|2963959_2965720_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QBJ42733.1|2965788_2966307_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QBJ42734.1|2966406_2966574_-	ribosome modulation factor	NA	NA	NA	NA	NA
QBJ42735.1|2966829_2967393_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42736.1|2967389_2969030_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
QBJ42737.1|2969034_2970288_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QBJ42738.1|2970302_2972210_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
2972080:2972099	attL	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
QBJ42739.1|2972222_2974331_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QBJ42740.1|2974429_2975539_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42741.1|2975535_2976078_-	cell division protein ZapC	NA	NA	NA	NA	NA
QBJ42742.1|2976243_2977254_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QBJ42743.1|2977461_2980074_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	4.8e-20
QBJ42744.1|2980500_2980692_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QBJ42745.1|2980962_2981649_+	virulence protein	NA	NA	NA	NA	NA
QBJ42746.1|2981633_2981933_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42747.1|2982001_2982628_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QBJ42748.1|2983275_2984244_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
QBJ42749.1|2984719_2985301_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QBJ42750.1|2985300_2987739_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
QBJ42751.1|2987792_2988035_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42752.1|2988073_2991424_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QBJ42753.1|2991495_2992200_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
QBJ42754.1|2992097_2992835_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QBJ42755.1|2992844_2993540_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QBJ42756.1|2993629_2994163_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QBJ42757.1|2994279_2994777_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QBJ42758.1|2994875_2995208_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
QBJ44604.1|2995204_2998192_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
QBJ42759.1|2998271_2998601_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
QBJ42760.1|2998597_2998996_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
QBJ42761.1|2999041_2999791_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
QBJ42762.1|2999802_3000204_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
QBJ42763.1|3000200_3000767_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
QBJ42764.1|3000747_3001047_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
QBJ42765.1|3001039_3001363_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
QBJ44606.1|3001453_3003535_-	peptidase S14	NA	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
QBJ44605.1|3003458_3004976_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
QBJ42766.1|3005002_3005209_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
QBJ42767.1|3005205_3007344_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
QBJ42768.1|3007300_3007834_-	DNA breaking-rejoining protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
QBJ44608.1|3008041_3008521_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
QBJ42769.1|3008538_3008991_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
QBJ44607.1|3008974_3009304_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QBJ42770.1|3009579_3010266_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QBJ42771.1|3010626_3011076_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42772.1|3011211_3011337_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42773.1|3011510_3011828_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42774.1|3011894_3012692_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QBJ42775.1|3012681_3012828_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QBJ42776.1|3012824_3013436_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
QBJ42777.1|3013438_3013645_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QBJ42778.1|3013644_3014247_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QBJ42779.1|3014329_3014551_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42780.1|3014662_3014896_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QBJ42781.1|3015187_3015478_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42782.1|3015555_3015867_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QBJ42783.1|3015863_3016211_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QBJ42784.1|3016221_3016971_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QBJ42785.1|3016973_3017957_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QBJ42786.1|3018041_3018416_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QBJ42787.1|3018381_3018621_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QBJ42788.1|3018740_3019151_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QBJ42789.1|3019200_3019461_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42790.1|3019453_3019612_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
QBJ42791.1|3019633_3019933_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
QBJ42792.1|3020059_3022945_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
QBJ42793.1|3022907_3024065_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
QBJ42794.1|3024107_3024347_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QBJ42795.1|3024387_3024636_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QBJ42796.1|3024680_3025973_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.0e-252
QBJ42797.1|3026167_3027370_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QBJ42798.1|3027450_3028884_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBJ42799.1|3029129_3030344_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QBJ42800.1|3030430_3030664_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42801.1|3030660_3031122_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ42802.1|3031322_3032723_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
3043875:3043894	attR	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
>prophage 9
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	3097153	3104467	4899128	protease,integrase	Ralstonia_phage(16.67%)	8	3092028:3092042	3103203:3103217
3092028:3092042	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
QBJ42851.1|3097153_3097531_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	42.7	5.9e-20
QBJ42852.1|3097692_3097890_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42853.1|3098103_3100380_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QBJ42854.1|3100410_3100731_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QBJ42855.1|3101054_3101276_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QBJ42856.1|3101230_3101425_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42857.1|3101405_3103352_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3103203:3103217	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
QBJ42858.1|3103348_3104467_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.8e-08
>prophage 10
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	3180317	3265802	4899128	head,tail,terminase,protease,lysis,coat,portal,integrase	Salmonella_phage(38.24%)	106	3228664:3228688	3265868:3265892
QBJ42928.1|3180317_3180833_-|protease	outer membrane protease	protease	A5LH44	Enterobacteria_phage	34.2	1.1e-16
QBJ42929.1|3181186_3182074_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
QBJ42930.1|3182376_3182880_+	DNA starvation/stationary phase protection protein	NA	A0A222YYG6	Streptomyces_phage	23.0	7.1e-05
QBJ42931.1|3183356_3184103_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
QBJ42932.1|3184248_3184908_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
QBJ42933.1|3184904_3185627_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.2	1.9e-35
QBJ42934.1|3185745_3187968_+	mechanosensitive channel protein	NA	NA	NA	NA	NA
QBJ42935.1|3187964_3188891_-	ribosomal RNA large subunit methyltransferase F	NA	NA	NA	NA	NA
QBJ42936.1|3189095_3189362_+	DksA/TraR family C4-type zinc finger protein	NA	E5E4B1	Acinetobacter_phage	52.8	2.2e-13
QBJ42937.1|3189646_3189907_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ42938.1|3190062_3191037_-	DNA-binding protein YbiB	NA	NA	NA	NA	NA
QBJ42939.1|3191066_3193211_-	ATP-dependent helicase DinG	NA	A0A127AW80	Bacillus_phage	26.7	7.4e-43
QBJ42940.1|3193418_3194780_-	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.2	2.9e-53
QBJ42941.1|3195009_3195684_+	transcriptional regulator	NA	NA	NA	NA	NA
QBJ42942.1|3195683_3196679_+	secretion protein HlyD	NA	NA	NA	NA	NA
QBJ42943.1|3196671_3198408_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.3	1.3e-18
QBJ42944.1|3198400_3199531_+	ABC transporter permease	NA	NA	NA	NA	NA
QBJ42945.1|3199646_3200753_+	ABC transporter permease	NA	NA	NA	NA	NA
QBJ42946.1|3200714_3201125_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42947.1|3201257_3202016_+	EEP domain-containing protein	NA	NA	NA	NA	NA
QBJ42948.1|3202012_3203254_+	cardiolipin synthase B	NA	NA	NA	NA	NA
QBJ42949.1|3203253_3204216_+	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA	NA
QBJ42950.1|3204218_3204779_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42951.1|3204786_3205395_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42952.1|3205418_3206126_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42953.1|3206271_3206976_-	BAX inhibitor (BI)-1/YccA family protein	NA	NA	NA	NA	NA
QBJ42954.1|3207023_3207476_-	molybdopterin synthase catalytic subunit	NA	NA	NA	NA	NA
QBJ42955.1|3207477_3207729_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
QBJ42956.1|3207715_3208201_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
QBJ42957.1|3208203_3208716_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
QBJ42958.1|3208737_3209727_-	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
QBJ42959.1|3210123_3211032_+	hypothetical protein	NA	A1IMD5	Streptococcus_phage	29.9	6.0e-26
QBJ42960.1|3211123_3213391_-	SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP	NA	Q9MBL9	Phage_Gifsy-2	42.1	4.1e-15
QBJ42961.1|3213398_3213572_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42962.1|3213880_3215902_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
QBJ42963.1|3215898_3216126_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42964.1|3216552_3217239_-	dethiobiotin synthase	NA	NA	NA	NA	NA
QBJ42965.1|3217231_3217987_-	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA	NA
QBJ42966.1|3217970_3219128_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
QBJ42967.1|3219124_3220165_-	biotin synthase	NA	NA	NA	NA	NA
QBJ42968.1|3220251_3221541_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.5	7.7e-19
QBJ42969.1|3221598_3222075_+	kinase inhibitor	NA	NA	NA	NA	NA
QBJ42970.1|3222159_3223680_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	40.0	1.7e-81
QBJ42971.1|3223681_3225367_-	urocanate hydratase	NA	NA	NA	NA	NA
QBJ42972.1|3225563_3226289_-	histidine utilization repressor	NA	NA	NA	NA	NA
QBJ42973.1|3226333_3227275_-	formimidoylglutamase	NA	NA	NA	NA	NA
QBJ42974.1|3227271_3228495_-	imidazolonepropionase	NA	NA	NA	NA	NA
3228664:3228688	attL	CGTTCAACTTAGTATAAAAAAGCAG	NA	NA	NA	NA
QBJ42975.1|3228956_3230813_-|tail	phage tail protein	tail	S4TVJ1	Salmonella_phage	90.1	2.3e-274
QBJ42976.1|3230850_3231081_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ42977.1|3231097_3233089_-	DNA transfer protein	NA	A0A1R3Y5Q1	Salmonella_virus	96.6	0.0e+00
QBJ42978.1|3233088_3234384_-	acyltransferase	NA	Q716G3	Shigella_phage	84.0	2.1e-181
QBJ42979.1|3234393_3235086_-	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	99.6	2.7e-111
QBJ42980.1|3235088_3235544_-	hypothetical protein	NA	I1TEJ3	Salmonella_phage	98.7	4.4e-86
QBJ42981.1|3235543_3236245_-|tail	phage tail protein	tail	C6ZR14	Salmonella_phage	92.3	4.7e-71
QBJ42982.1|3236248_3237667_-	hypothetical protein	NA	A0A075B8I2	Enterobacteria_phage	98.3	3.9e-274
QBJ42983.1|3237676_3238138_-|head	head DNA stabilization protein	head	A5VW70	Enterobacteria_phage	100.0	7.1e-84
QBJ42984.1|3238118_3238307_-	hypothetical protein	NA	A5VW71	Enterobacteria_phage	100.0	2.9e-28
QBJ42985.1|3238348_3239602_-|coat	coat protein	coat	A0A088CQ56	Enterobacteria_phage	98.3	1.0e-233
QBJ42986.1|3239620_3240514_-	scaffolding protein	NA	A0A088CPT0	Enterobacteria_phage	84.2	2.6e-114
QBJ42987.1|3240604_3242803_-|portal	portal protein	portal	A0A088CQ69	Enterobacteria_phage	97.3	0.0e+00
QBJ42988.1|3242804_3244220_-|terminase	PBSX family phage terminase large subunit	terminase	A5VW75	Enterobacteria_phage	99.2	3.2e-276
QBJ44615.1|3244216_3244639_-	ubiquitin carboxyl-hydrolase	NA	Q716H4	Shigella_phage	99.3	3.6e-74
QBJ42989.1|3244662_3244842_-	hypothetical protein	NA	Q9AZ02	Salmonella_phage	93.2	2.1e-23
QBJ42990.1|3244843_3245086_-	hypothetical protein	NA	A0A0M4R322	Salmonella_phage	98.8	8.3e-36
QBJ42991.1|3245381_3245909_-	DUF2829 domain-containing protein	NA	A0A1B0VMG3	Pseudomonas_phage	54.6	3.3e-45
QBJ42992.1|3245987_3246425_-|lysis	lysis protein	lysis	A0A2I6PIF7	Escherichia_phage	97.9	6.5e-71
QBJ44616.1|3246513_3247011_-	lysozyme	NA	I6R0P2	Salmonella_phage	100.0	9.9e-92
QBJ42993.1|3246988_3247192_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
QBJ42994.1|3247655_3248174_-	antiterminator	NA	Q716B8	Shigella_phage	98.8	2.2e-94
QBJ42995.1|3248164_3248836_-	serine/threonine protein phosphatase	NA	Q5TJL8	Enterobacteria_phage	95.5	2.0e-127
QBJ42996.1|3248832_3249441_-	protein NinG	NA	I6S604	Salmonella_phage	95.0	2.9e-93
QBJ42997.1|3249415_3249595_-	NinF family protein	NA	I6R994	Salmonella_phage	94.9	1.1e-27
QBJ42998.1|3249591_3249768_-	NinE family protein	NA	Q5G8S3	Enterobacteria_phage	100.0	3.0e-27
QBJ42999.1|3249734_3249908_-	protein ninD	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
QBJ43000.1|3249904_3250342_-	recombination protein NinB	NA	A0A192Y6T2	Salmonella_phage	98.6	9.4e-78
QBJ43001.1|3250356_3250563_-	hypothetical protein	NA	I1TEG6	Salmonella_phage	98.5	2.7e-35
QBJ43002.1|3250566_3250818_-	hypothetical protein	NA	A0A220NQX3	Salmonella_phage	65.5	2.9e-23
QBJ43003.1|3250829_3251030_-	hypothetical protein	NA	Q716C9	Shigella_phage	100.0	4.6e-32
QBJ43004.1|3251026_3251353_-	hypothetical protein	NA	Q716D0	Shigella_phage	99.1	4.2e-59
QBJ43005.1|3251425_3251695_-	hypothetical protein	NA	G9L682	Escherichia_phage	98.9	1.9e-44
QBJ43006.1|3251691_3251982_-	hypothetical protein	NA	K7PH23	Enterobacteria_phage	100.0	2.5e-50
QBJ43007.1|3251978_3252824_-	ATP-binding protein	NA	K7PLU3	Enterobacteria_phage	73.6	2.1e-110
QBJ43008.1|3252826_3253669_-	replication protein	NA	K7PGT1	Enterobacteria_phage	94.2	1.0e-128
QBJ43009.1|3253655_3254300_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44617.1|3254334_3254613_-	hypothetical protein	NA	Q8VNP9	Enterobacteria_phage	100.0	3.6e-43
QBJ43010.1|3254721_3254916_-	Cro/Cl family transcriptional regulator	NA	K7PLQ6	Enterobacteria_phage	100.0	1.8e-28
QBJ43011.1|3255022_3255739_+	helix-turn-helix domain-containing protein	NA	K7PGR7	Enterobacteria_phage	100.0	9.2e-123
QBJ43012.1|3255757_3256126_+	hypothetical protein	NA	K7PJJ3	Enterobacteria_phage	100.0	1.3e-56
QBJ43013.1|3256493_3256799_+	hypothetical protein	NA	A5VW99	Enterobacteria_phage	92.8	1.3e-25
QBJ43014.1|3257069_3257264_+	restriction endonuclease	NA	A0A2H4FS18	Salmonella_phage	100.0	2.5e-30
QBJ44618.1|3257347_3258358_+	hypothetical protein	NA	Q5G8T6	Enterobacteria_phage	80.4	7.2e-73
QBJ43015.1|3258552_3258726_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	I6R987	Salmonella_phage	100.0	8.9e-24
QBJ43016.1|3258706_3258895_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
QBJ43017.1|3259024_3259732_+	recombinase	NA	B8K1D9	Salmonella_phage	96.2	6.7e-134
QBJ43018.1|3259732_3260191_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	89.0	2.6e-70
QBJ43019.1|3260199_3260679_+	hypothetical protein	NA	Q716E9	Shigella_phage	91.2	1.6e-86
QBJ43020.1|3260687_3261236_+	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	100.0	2.1e-106
QBJ43021.1|3261251_3261545_+	RecBCD nuclease inhibitor	NA	A0A1V0E5L7	Salmonella_phage	100.0	5.5e-50
QBJ43022.1|3261555_3261729_+	DUF2737 domain-containing protein	NA	A0A2H4FUQ1	Salmonella_phage	96.5	2.1e-25
QBJ44619.1|3261740_3262265_+	hypothetical protein	NA	Q5G8U6	Enterobacteria_phage	64.8	1.6e-39
QBJ43023.1|3262261_3262858_+	hypothetical protein	NA	A0A2H4FRZ0	Salmonella_phage	55.2	8.7e-42
QBJ43024.1|3262859_3263078_+	sugar acetyltransferase inhibitor	NA	C6ZR28	Salmonella_phage	97.2	7.0e-34
QBJ43025.1|3263081_3263315_+	hypothetical protein	NA	A0A1V0E5L6	Salmonella_phage	91.1	6.0e-15
QBJ43026.1|3263384_3264359_+	hypothetical protein	NA	Q5G8V2	Enterobacteria_phage	44.0	5.2e-28
QBJ43027.1|3264535_3264754_+	excisionase	NA	A0A1V0E5M4	Salmonella_phage	100.0	5.7e-36
QBJ43028.1|3264731_3265802_+|integrase	integrase	integrase	A0A1V0E5M7	Salmonella_phage	99.6	3.0e-154
3265868:3265892	attR	CGTTCAACTTAGTATAAAAAAGCAG	NA	NA	NA	NA
>prophage 11
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	4493377	4538153	4899128	tail,tRNA,plate	Burkholderia_phage(40.91%)	48	NA	NA
QBJ44114.1|4493377_4494376_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QBJ44115.1|4494463_4495774_-	conjugal transfer protein	NA	NA	NA	NA	NA
QBJ44116.1|4496020_4496536_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QBJ44117.1|4496635_4496845_-	CsbD family protein	NA	NA	NA	NA	NA
QBJ44674.1|4496866_4496980_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44118.1|4496976_4498302_-	MATE family efflux transporter	NA	NA	NA	NA	NA
QBJ44119.1|4498480_4499089_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QBJ44120.1|4499197_4499566_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QBJ44121.1|4499736_4502157_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QBJ44122.1|4502255_4503128_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QBJ44123.1|4503141_4503639_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QBJ44124.1|4503819_4504737_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QBJ44125.1|4504900_4506259_-	maltoporin	NA	NA	NA	NA	NA
QBJ44126.1|4506347_4507457_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QBJ44127.1|4507818_4509009_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QBJ44128.1|4509140_4510685_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QBJ44129.1|4510699_4511590_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QBJ44130.1|4511755_4512166_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QBJ44131.1|4512308_4514405_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QBJ44132.1|4514404_4515142_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44133.1|4515138_4515777_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QBJ44134.1|4515840_4516083_-	outer membrane protein	NA	NA	NA	NA	NA
QBJ44135.1|4516526_4518176_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QBJ44136.1|4518520_4519870_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QBJ44137.1|4520000_4520348_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QBJ44138.1|4520925_4521213_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QBJ44139.1|4521215_4521821_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QBJ44140.1|4521833_4522148_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QBJ44141.1|4522307_4522763_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44142.1|4522759_4522957_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QBJ44143.1|4522946_4524374_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.8e-194
QBJ44144.1|4524373_4524898_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QBJ44145.1|4524949_4525267_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QBJ44146.1|4525226_4525355_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QBJ44147.1|4525451_4527806_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.8	2.8e-67
QBJ44148.1|4527805_4528759_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QBJ44149.1|4528758_4528968_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QBJ44150.1|4528955_4529999_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	3.2e-76
QBJ44151.1|4530008_4530731_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	2.3e-12
QBJ44152.1|4530739_4530979_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44153.1|4531054_4531417_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
QBJ44154.1|4531413_4532343_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
QBJ44155.1|4532342_4533890_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	30.4	1.6e-50
QBJ44156.1|4534053_4534413_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QBJ44157.1|4534403_4535519_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	5.3e-101
QBJ44158.1|4535511_4536144_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
QBJ44159.1|4536146_4537628_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	1.6e-52
QBJ44160.1|4537637_4538153_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	40.7	1.3e-33
>prophage 12
CP025273	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 chromosome, complete genome	4899128	4686985	4722703	4899128	terminase,tail,capsid,holin,head,portal,plate,integrase	Salmonella_phage(45.24%)	48	4686778:4686824	4717757:4717803
4686778:4686824	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QBJ44279.1|4686985_4687402_+	hypothetical protein	NA	S4TTB4	Salmonella_phage	52.3	1.8e-33
QBJ44280.1|4687436_4687655_-	transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
QBJ44281.1|4687732_4688902_-	hypothetical protein	NA	S4TRX8	Salmonella_phage	95.6	1.4e-205
QBJ44282.1|4688898_4689384_-|tail	phage tail protein	tail	S4TUC3	Salmonella_phage	94.4	5.9e-81
QBJ44283.1|4689395_4691837_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	93.1	0.0e+00
QBJ44284.1|4691829_4691985_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	98.0	8.8e-23
QBJ44285.1|4691981_4692317_-|tail	phage tail assembly protein	tail	A0A0M4S5P8	Salmonella_phage	100.0	1.8e-52
QBJ44286.1|4692379_4692898_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
QBJ44287.1|4692913_4694101_-|tail	phage tail protein	tail	Q6K1H0	Salmonella_virus	100.0	2.0e-223
QBJ44288.1|4694235_4694805_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.8	3.0e-92
QBJ44289.1|4694804_4696547_-	hypothetical protein	NA	A0A0M3ULF6	Salmonella_phage	97.1	1.5e-267
QBJ44290.1|4696557_4697088_-|tail	phage tail protein I	tail	A0A0M4R4W9	Salmonella_phage	100.0	1.9e-104
QBJ44291.1|4697080_4697989_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	98.7	1.7e-158
QBJ44292.1|4697995_4698343_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	2.1e-56
QBJ44293.1|4698339_4698981_-|plate	phage baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	85.0	2.4e-98
QBJ44294.1|4699057_4700434_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
QBJ44295.1|4700438_4700906_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	67.8	9.8e-49
QBJ44296.1|4700898_4701366_-|tail	phage tail protein	tail	U5N0S7	Enterobacteria_phage	69.0	2.2e-56
QBJ44297.1|4701328_4701574_-|holin	holin	holin	S4TNY4	Salmonella_phage	73.1	5.5e-27
QBJ44298.1|4701473_4701887_-	protein lysB	NA	O80310	Escherichia_phage	59.9	8.4e-36
QBJ44299.1|4701883_4702393_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	82.6	4.6e-76
QBJ44300.1|4702376_4702598_-	primosomal protein	NA	A0A218M4L5	Erwinia_phage	71.2	8.7e-24
QBJ44301.1|4702588_4702792_-|tail	phage tail protein	tail	U5N3E7	Enterobacteria_phage	76.1	8.9e-23
QBJ44302.1|4702791_4703292_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	68.5	3.8e-59
QBJ44303.1|4703389_4704148_-|terminase	terminase	terminase	Q94MJ2	Enterobacteria_phage	67.1	2.7e-80
QBJ44304.1|4704151_4705312_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	62.5	2.8e-129
QBJ44305.1|4705343_4706207_-|capsid	capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	64.8	4.5e-100
QBJ44306.1|4706371_4708141_+	oxidoreductase	NA	Q9T0R3	Escherichia_phage	81.0	3.2e-286
QBJ44307.1|4708140_4709178_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	78.7	7.7e-163
QBJ44308.1|4709698_4709890_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	100.0	1.1e-27
QBJ44309.1|4709888_4710320_+	hypothetical protein	NA	S4TUD6	Salmonella_phage	100.0	1.1e-75
QBJ44310.1|4710453_4711494_+	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	100.0	6.3e-197
QBJ44311.1|4711490_4711688_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44312.1|4711866_4714143_-	replication endonuclease	NA	S4TTC1	Salmonella_phage	88.0	0.0e+00
QBJ44313.1|4714132_4714408_-	hypothetical protein	NA	M1TAP2	Escherichia_phage	72.5	7.0e-31
QBJ44314.1|4714404_4714629_-	hypothetical protein	NA	A0A0F7LDG9	Escherichia_phage	75.7	2.0e-23
QBJ44315.1|4714930_4715155_-	DUF2732 domain-containing protein	NA	Q7Y4C2	Escherichia_virus	78.4	3.4e-23
QBJ44316.1|4715218_4715719_-	replication protein B	NA	M1SV55	Escherichia_phage	91.0	1.8e-85
QBJ44317.1|4715888_4716161_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	87.8	1.0e-42
QBJ44318.1|4716297_4716591_+	XRE family transcriptional regulator	NA	Q1JS45	Enterobacteria_phage	75.3	1.6e-36
QBJ44319.1|4716660_4717641_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	96.0	1.5e-179
QBJ44320.1|4717825_4718326_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
4717757:4717803	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QBJ44321.1|4718476_4719175_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QBJ44322.1|4719171_4720545_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
QBJ44323.1|4720592_4720796_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44324.1|4720916_4721312_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
QBJ44325.1|4721323_4722076_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
QBJ44326.1|4722082_4722703_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
>prophage 1
CP025275	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923 plasmid pSNE2-1923	125113	9880	63050	125113	tail,head,transposase	Escherichia_phage(23.08%)	56	NA	NA
QBJ44696.1|9880_11143_+|transposase	IS1380 family transposase ISEc9	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
QBJ44697.1|11466_12612_+	class C beta-lactamase CMY-2	NA	NA	NA	NA	NA
QBJ44698.1|12705_13239_+	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	54.1	6.1e-47
QBJ44699.1|13235_13553_-	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA	NA
QBJ44700.1|13809_14235_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ44701.1|19914_20622_+	disulfide isomerase	NA	NA	NA	NA	NA
QBJ44702.1|22563_22956_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
QBJ44703.1|22959_23538_-	type IV conjugative transfer system protein TraV	NA	NA	NA	NA	NA
QBJ44704.1|23534_24851_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
QBJ44705.1|24847_25765_-	conjugal transfer protein TraK	NA	NA	NA	NA	NA
QBJ44706.1|25748_26375_-	pilus assembly protein	NA	NA	NA	NA	NA
QBJ44707.1|26371_26653_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
QBJ44708.1|26797_27175_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44709.1|27498_28161_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44710.1|28160_28538_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44711.1|28547_28994_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44712.1|29003_29633_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
QBJ44713.1|29589_30174_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44714.1|30184_32050_-	conjugal transfer protein	NA	NA	NA	NA	NA
QBJ44715.1|32046_35019_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
QBJ44716.1|35186_35804_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44717.1|35785_36019_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44718.1|36018_38211_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.4	9.9e-43
QBJ44719.1|38225_38714_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44720.1|38804_39104_-	RNA-binding protein	NA	A0A0K1LLW2	Caulobacter_phage	55.4	3.6e-20
QBJ44721.1|39108_39315_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44722.1|39315_39933_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
QBJ44723.1|39988_40645_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44724.1|40644_42072_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
QBJ44725.1|42075_42576_-	hypothetical protein	NA	I3UMJ0	Colwellia_phage	38.4	9.5e-18
QBJ44726.1|42584_42917_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44824.1|42901_43333_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44727.1|43400_44075_-	thymidylate kinase	NA	NA	NA	NA	NA
QBJ44728.1|44049_44331_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44729.1|44323_44701_-	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	49.6	1.7e-22
QBJ44730.1|45262_45898_+	restriction endonuclease subunit M	NA	NA	NA	NA	NA
QBJ44731.1|45950_46223_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44732.1|46271_47453_-	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	28.7	2.4e-11
QBJ44733.1|47456_48242_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	6.1e-11
QBJ44734.1|48415_48727_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44735.1|49033_49849_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
QBJ44736.1|49909_50713_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
QBJ44737.1|50712_51549_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QBJ44738.1|51854_52097_+	relaxase	NA	NA	NA	NA	NA
QBJ44739.1|52128_52806_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ44740.1|52884_54084_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
QBJ44741.1|54350_54656_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ44742.1|54683_55898_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	3.2e-19
QBJ44743.1|56114_56999_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
QBJ44744.1|57029_58523_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QBJ44745.1|58733_58958_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ44746.1|58954_59692_-	resolvase	NA	NA	NA	NA	NA
QBJ44747.1|59798_60290_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ44748.1|60323_61028_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBJ44749.1|61090_61795_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QBJ44750.1|62345_63050_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
