assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	1	69340-69544	1	CRISPRCasFinder	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GGTGTAGTAGTGGTGTAGTAGTT	23	0	0	NA	NA	NA	3	3	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|94aa|up_2|CP035312.1_67812_68094_-,NA|69aa|up_1|CP035312.1_68213_68420_-,NA|136aa|up_0|CP035312.1_68416_68824_-,NA|180aa|down_3|CP035312.1_71889_72429_-	NA|230aa|up_9|CP035312.1_59988_60678_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|703aa|up_8|CP035312.1_60684_62793_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|92aa|up_7|CP035312.1_62811_63087_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|208aa|up_6|CP035312.1_63141_63765_-	PRK00300, gmk, guanylate kinase; Provisional	NA|561aa|up_5|CP035312.1_64022_65705_+	PRK08097, ligB, NAD-dependent DNA ligase LigB	NA|206aa|up_4|CP035312.1_65701_66319_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|275aa|up_3|CP035312.1_66609_67434_-	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|94aa|up_2|CP035312.1_67812_68094_-	NA	NA|69aa|up_1|CP035312.1_68213_68420_-	NA	NA|136aa|up_0|CP035312.1_68416_68824_-	NA	NA|478aa|down_0|CP035312.1_69641_71075_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|159aa|down_1|CP035312.1_71131_71608_-	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|65aa|down_2|CP035312.1_71623_71818_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|180aa|down_3|CP035312.1_71889_72429_-	NA	NA|419aa|down_4|CP035312.1_72619_73876_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|288aa|down_5|CP035312.1_74050_74914_-	PRK11820, PRK11820, YicC family protein	NA|239aa|down_6|CP035312.1_75040_75757_+	PRK00173, rph, ribonuclease PH; Reviewed	NA|214aa|down_7|CP035312.1_75822_76464_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|199aa|down_8|CP035312.1_76500_77097_-	PRK09480, slmA, division inhibitor protein; Provisional	NA|152aa|down_9|CP035312.1_77203_77659_-	PRK00601, dut, dUTP diphosphatase
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	2	624060-624312	1	PILER-CR	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAG	55	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|180aa|down_1|CP035312.1_625819_626359_-	NA|158aa|up_9|CP035312.1_613634_614108_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|CP035312.1_614130_615411_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|CP035312.1_615659_616469_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|CP035312.1_616523_616988_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|CP035312.1_616987_617323_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|CP035312.1_617471_619043_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|CP035312.1_619417_620752_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|CP035312.1_620767_621538_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP035312.1_621567_622458_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP035312.1_622554_623700_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|368aa|down_0|CP035312.1_624694_625798_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|CP035312.1_625819_626359_-	NA	NA|115aa|down_2|CP035312.1_626613_626958_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|CP035312.1_627146_628085_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|CP035312.1_628183_629173_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|CP035312.1_629194_630526_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|CP035312.1_630551_631760_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|CP035312.1_631793_634088_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|CP035312.1_634101_634491_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|CP035312.1_634562_635927_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	3	942292-942747	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,28,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	Unclear	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|CP035312.1_941001_941142_-,NA	NA|434aa|up_9|CP035312.1_931698_933000_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP035312.1_933047_935282_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP035312.1_935359_935608_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP035312.1_935607_935943_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP035312.1_936013_936805_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP035312.1_937032_938670_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP035312.1_938757_940056_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP035312.1_940115_940988_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP035312.1_941001_941142_-	NA	NA|224aa|up_0|CP035312.1_941280_941952_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP035312.1_943385_944864_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP035312.1_944890_946168_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP035312.1_946486_947272_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP035312.1_947341_948796_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP035312.1_948889_950227_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP035312.1_950204_950984_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP035312.1_950980_951841_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP035312.1_951988_952564_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP035312.1_952580_952841_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP035312.1_952831_954103_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	4	968296-968569	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|CP035312.1_956660_958373_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP035312.1_958446_959181_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|CP035312.1_959539_962206_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|CP035312.1_962620_964129_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|CP035312.1_964121_964604_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP035312.1_964616_965708_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP035312.1_965710_966385_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP035312.1_966371_966971_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP035312.1_966986_967904_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP035312.1_967905_968190_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP035312.1_970218_971256_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP035312.1_971507_972416_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP035312.1_972417_973845_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP035312.1_973844_974450_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP035312.1_974499_974823_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP035312.1_975016_975328_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP035312.1_975346_976057_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP035312.1_976056_976536_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP035312.1_976532_977582_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP035312.1_977562_978324_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	5	969377-970198	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,13,13	13	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|CP035312.1_956660_958373_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP035312.1_958446_959181_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|CP035312.1_959539_962206_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|CP035312.1_962620_964129_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|CP035312.1_964121_964604_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP035312.1_964616_965708_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP035312.1_965710_966385_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP035312.1_966371_966971_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP035312.1_966986_967904_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP035312.1_967905_968190_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP035312.1_970218_971256_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP035312.1_971507_972416_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP035312.1_972417_973845_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP035312.1_973844_974450_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP035312.1_974499_974823_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP035312.1_975016_975328_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP035312.1_975346_976057_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP035312.1_976056_976536_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP035312.1_976532_977582_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP035312.1_977562_978324_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	6	1517641-1517758	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|CP035312.1_1506926_1507112_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|CP035312.1_1507124_1508024_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|CP035312.1_1508216_1509407_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|CP035312.1_1509403_1510663_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|CP035312.1_1510652_1512281_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|CP035312.1_1512553_1513912_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|CP035312.1_1513916_1514993_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|CP035312.1_1515455_1516106_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP035312.1_1516159_1516414_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP035312.1_1516413_1517544_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP035312.1_1517777_1520063_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|241aa|down_1|CP035312.1_1524570_1525293_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_2|CP035312.1_1525439_1528067_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_3|CP035312.1_1528215_1529904_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_4|CP035312.1_1529900_1530524_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|CP035312.1_1530667_1535062_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|CP035312.1_1535062_1536712_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|CP035312.1_1536716_1537493_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|CP035312.1_1537566_1538751_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|CP035312.1_1538781_1540104_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	7	2132089-2132212	6	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|CP035312.1_2141108_2141198_+	NA|471aa|up_9|CP035312.1_2120767_2122180_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP035312.1_2122736_2122946_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP035312.1_2124176_2124803_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP035312.1_2124823_2126926_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP035312.1_2126929_2127577_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP035312.1_2127640_2128309_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP035312.1_2128305_2129091_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP035312.1_2129094_2129907_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP035312.1_2129918_2131523_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP035312.1_2131648_2131954_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP035312.1_2132526_2133783_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP035312.1_2133823_2135197_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP035312.1_2135411_2136053_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP035312.1_2136092_2137241_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP035312.1_2137531_2138743_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP035312.1_2138855_2139788_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP035312.1_2139784_2140810_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|CP035312.1_2141108_2141198_+	NA	NA|390aa|down_8|CP035312.1_2141363_2142533_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|CP035312.1_2142767_2143349_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	9	3071799-3071943	8	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|CP035312.1_3059697_3060687_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|CP035312.1_3061083_3061992_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|CP035312.1_3062183_3064205_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|CP035312.1_3064783_3065461_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|CP035312.1_3065453_3066209_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|CP035312.1_3066195_3067350_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|CP035312.1_3067346_3068387_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|CP035312.1_3068473_3069763_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|CP035312.1_3069821_3070298_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|CP035312.1_3070449_3071733_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP035312.1_3071966_3074228_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP035312.1_3074410_3075844_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP035312.1_3075919_3076972_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|152aa|down_3|CP035312.1_3077155_3077611_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|403aa|down_4|CP035312.1_3077589_3078798_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|332aa|down_5|CP035312.1_3079487_3080483_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|CP035312.1_3080637_3081456_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|CP035312.1_3081456_3082515_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|CP035312.1_3082517_3083207_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_9|CP035312.1_3083206_3083980_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	10	3302712-3302808	9	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|CP035312.1_3294507_3295200_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|CP035312.1_3295419_3295962_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|CP035312.1_3296432_3297299_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|CP035312.1_3297300_3297513_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|CP035312.1_3297620_3298142_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|CP035312.1_3298177_3299563_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|CP035312.1_3299736_3300231_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|CP035312.1_3300233_3300956_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|CP035312.1_3301073_3301583_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|CP035312.1_3301579_3302647_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|CP035312.1_3302841_3303735_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|CP035312.1_3303731_3304547_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|CP035312.1_3304557_3305817_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|CP035312.1_3305826_3307494_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|CP035312.1_3307810_3308860_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|CP035312.1_3308881_3310117_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|CP035312.1_3310127_3310913_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|CP035312.1_3311140_3312286_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|CP035312.1_3312307_3313609_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|CP035312.1_3313665_3315027_-	PRK08044, PRK08044, allantoinase AllB
GCA_004328685.1_ASM432868v1	CP035312	Escherichia coli strain D72 chromosome, complete genome	11	3807672-3807813	10	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|96aa|up_9|CP035312.1_3796664_3796952_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|CP035312.1_3796948_3798235_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|CP035312.1_3798285_3799227_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|CP035312.1_3799241_3800012_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|CP035312.1_3800483_3801998_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|CP035312.1_3802028_3803171_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|CP035312.1_3803299_3804517_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|CP035312.1_3804590_3806144_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|CP035312.1_3806252_3807038_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|CP035312.1_3807043_3807634_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|CP035312.1_3807842_3808238_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|CP035312.1_3808499_3811721_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|CP035312.1_3811738_3812887_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|CP035312.1_3813342_3814164_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|CP035312.1_3814330_3815245_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|CP035312.1_3815310_3816261_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|CP035312.1_3816262_3816712_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|CP035312.1_3816799_3817294_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|CP035312.1_3817293_3820110_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|CP035312.1_3820152_3821094_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
