assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004328605.1_ASM432860v1	CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	1	825567-825692	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	TTTCCCCTTGGCAGGGGAGGGAACTGTTCAGTG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA|278aa|down_6|CP036514.1_835013_835847_+	NA|182aa|up_9|CP036514.1_814189_814735_-	PRK10330, PRK10330, electron transport protein HydN	NA|715aa|up_8|CP036514.1_815180_817325_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|176aa|up_7|CP036514.1_817647_818175_-	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|152aa|up_6|CP036514.1_818167_818623_-	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|275aa|up_5|CP036514.1_818622_819447_-	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|186aa|up_4|CP036514.1_819443_820001_-	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional	NA|568aa|up_3|CP036514.1_820017_821721_-	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|312aa|up_2|CP036514.1_821791_822727_-	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]	NA|636aa|up_1|CP036514.1_822737_824645_-	PRK06521, PRK06521, hydrogenase 4 subunit B; Validated	NA|205aa|up_0|CP036514.1_824641_825256_-	cd10554, HycB_like, HycB, HydN and similar proteins	NA|333aa|down_0|CP036514.1_825758_826757_-	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|336aa|down_1|CP036514.1_826796_827804_-	PRK10727, PRK10727, HTH-type transcriptional regulator GalR	NA|723aa|down_2|CP036514.1_828634_830803_+	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase	NA|403aa|down_3|CP036514.1_830799_832008_+	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional	NA|347aa|down_4|CP036514.1_832053_833094_-	PRK10625, tas, putative aldo-keto reductase; Provisional	NA|485aa|down_5|CP036514.1_833353_834808_+	PRK10518, PRK10518, alkaline phosphatase; Provisional	NA|278aa|down_6|CP036514.1_835013_835847_+	NA	NA|239aa|down_7|CP036514.1_835901_836618_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|229aa|down_8|CP036514.1_836718_837405_-	PRK05070, PRK05070, DNA mismatch repair protein; Provisional	NA|179aa|down_9|CP036514.1_838116_838653_+	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed
GCA_004328605.1_ASM432860v1	CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	2	1128616-1129063	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,7,6	7	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA	NA|515aa|up_9|CP036514.1_1118418_1119963_-	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|267aa|up_8|CP036514.1_1119965_1120766_-	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|258aa|up_7|CP036514.1_1120770_1121544_-	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional	NA|353aa|up_6|CP036514.1_1121553_1122612_-	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|170aa|up_5|CP036514.1_1122627_1123137_-	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|254aa|up_4|CP036514.1_1123164_1123926_-	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|96aa|up_3|CP036514.1_1123934_1124222_-	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|336aa|up_2|CP036514.1_1124236_1125244_-	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|691aa|up_1|CP036514.1_1125500_1127573_+	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional	NA|265aa|up_0|CP036514.1_1127644_1128439_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|533aa|down_0|CP036514.1_1129072_1130671_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|557aa|down_1|CP036514.1_1130756_1132427_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|550aa|down_2|CP036514.1_1132524_1134174_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|485aa|down_3|CP036514.1_1134335_1135790_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|546aa|down_4|CP036514.1_1136071_1137709_+	PRK05380, pyrG, CTP synthetase; Validated	NA|435aa|down_5|CP036514.1_1137792_1139097_+	PRK00077, eno, enolase; Provisional	NA|76aa|down_6|CP036514.1_1139211_1139439_-	PRK11415, PRK11415, hypothetical protein; Provisional	NA|256aa|down_7|CP036514.1_1139794_1140562_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|255aa|down_8|CP036514.1_1140657_1141422_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_9|CP036514.1_1141408_1142131_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCA_004328605.1_ASM432860v1	CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	3	1142250-1142351	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	CAGAATCTCGATTGGCTCCTCCCCCTGCGAAGGGGGAG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA	NA|533aa|up_9|CP036514.1_1129072_1130671_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|557aa|up_8|CP036514.1_1130756_1132427_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|550aa|up_7|CP036514.1_1132524_1134174_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|485aa|up_6|CP036514.1_1134335_1135790_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|546aa|up_5|CP036514.1_1136071_1137709_+	PRK05380, pyrG, CTP synthetase; Validated	NA|435aa|up_4|CP036514.1_1137792_1139097_+	PRK00077, eno, enolase; Provisional	NA|76aa|up_3|CP036514.1_1139211_1139439_-	PRK11415, PRK11415, hypothetical protein; Provisional	NA|256aa|up_2|CP036514.1_1139794_1140562_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|255aa|up_1|CP036514.1_1140657_1141422_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|up_0|CP036514.1_1141408_1142131_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|478aa|down_0|CP036514.1_1142361_1143795_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|512aa|down_1|CP036514.1_1143896_1145432_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|563aa|down_2|CP036514.1_1145431_1147120_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|285aa|down_3|CP036514.1_1147485_1148340_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|258aa|down_4|CP036514.1_1148413_1149187_-	PRK08017, PRK08017, SDR family oxidoreductase	NA|214aa|down_5|CP036514.1_1149241_1149883_-	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional	NA|229aa|down_6|CP036514.1_1149850_1150537_+	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional	NA|802aa|down_7|CP036514.1_1150533_1152939_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|473aa|down_8|CP036514.1_1153180_1154599_+	pfam17158, MASE4, Membrane-associated sensor, integral membrane domain	NA|175aa|down_9|CP036514.1_1155719_1156244_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
GCA_004328605.1_ASM432860v1	CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	4	2784473-2784800	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,5,4	5	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA|186aa|down_8|CP036514.1_2794186_2794744_+	NA|805aa|up_9|CP036514.1_2768390_2770805_+	COG3664, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|316aa|up_8|CP036514.1_2773313_2774261_-	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA|212aa|up_7|CP036514.1_2774499_2775135_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|525aa|up_6|CP036514.1_2775431_2777006_+	PRK10551, PRK10551, cyclic di-GMP phosphodiesterase	NA|609aa|up_5|CP036514.1_2777248_2779075_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|366aa|up_4|CP036514.1_2779086_2780184_+	PRK15133, PRK15133, microcin C ABC transporter permease YejB; Provisional	NA|341aa|up_3|CP036514.1_2780183_2781206_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|536aa|up_2|CP036514.1_2781207_2782815_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|132aa|up_1|CP036514.1_2782895_2783291_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|151aa|up_0|CP036514.1_2783958_2784411_-	pfam12883, DUF3828, Protein of unknown function (DUF3828)	NA|404aa|down_0|CP036514.1_2785144_2786356_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|241aa|down_1|CP036514.1_2786465_2787188_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|80aa|down_2|CP036514.1_2787501_2787741_+	pfam10678, DUF2492, Protein of unknown function (DUF2492)	NA|587aa|down_3|CP036514.1_2787763_2789524_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|down_4|CP036514.1_2789670_2789955_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|336aa|down_5|CP036514.1_2790050_2791058_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|down_6|CP036514.1_2791266_2791494_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|595aa|down_7|CP036514.1_2791523_2793308_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|186aa|down_8|CP036514.1_2794186_2794744_+	NA	NA|116aa|down_9|CP036514.1_2794740_2795088_+	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site
GCA_004328605.1_ASM432860v1	CP036514	Hafnia alvei strain PCM_1220 chromosome, complete genome	5	2860877-2861027	5,3	CRISPRCasFinder,PILER-CR	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	TTTTCTAAGCTGCCTGTACGGCAGTTAACT,AAGTTAACTGCCGTACAGGCAGCTTAGAAAA	30,31	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA|122aa|up_2|CP036514.1_2859672_2860038_+,NA|86aa|up_0|CP036514.1_2860529_2860787_-,NA	NA|114aa|up_9|CP036514.1_2852164_2852506_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|527aa|up_8|CP036514.1_2852861_2854442_+	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|348aa|up_7|CP036514.1_2854478_2855522_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|275aa|up_6|CP036514.1_2855521_2856346_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|284aa|up_5|CP036514.1_2856338_2857190_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|239aa|up_4|CP036514.1_2857176_2857893_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|237aa|up_3|CP036514.1_2857976_2858687_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|122aa|up_2|CP036514.1_2859672_2860038_+	NA	NA|144aa|up_1|CP036514.1_2860037_2860469_+	pfam12883, DUF3828, Protein of unknown function (DUF3828)	NA|86aa|up_0|CP036514.1_2860529_2860787_-	NA	NA|151aa|down_0|CP036514.1_2861164_2861617_-	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|81aa|down_1|CP036514.1_2861619_2861862_-	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|161aa|down_2|CP036514.1_2861858_2862341_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|329aa|down_3|CP036514.1_2862377_2863364_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|down_4|CP036514.1_2863759_2864668_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|394aa|down_5|CP036514.1_2864717_2865899_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|398aa|down_6|CP036514.1_2866125_2867319_-	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY	NA|404aa|down_7|CP036514.1_2867527_2868739_+	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|342aa|down_8|CP036514.1_2868919_2869945_+	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|182aa|down_9|CP036514.1_2870027_2870573_-	pfam07437, YfaZ, YfaZ precursor
