The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP036499	Vibrio cholerae strain 20000 chromosome 1, complete sequence	2942340	139651	146843	2942340		Anguillid_herpesvirus(16.67%)	9	NA	NA
QBJ27936.1|139651_140080_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
QBJ27937.1|140282_141572_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
QBJ27938.1|141791_141986_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
QBJ27939.1|142034_142373_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
QBJ27940.1|142386_144237_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.9	7.7e-105
QBJ27941.1|144260_144776_-	co-chaperone HscB	NA	NA	NA	NA	NA
QBJ27942.1|144824_145148_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
QBJ27943.1|145208_145592_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
QBJ27944.1|145628_146843_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.5e-32
>prophage 2
CP036499	Vibrio cholerae strain 20000 chromosome 1, complete sequence	2942340	377257	384523	2942340		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
QBJ28133.1|377257_378145_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	5.4e-56
QBJ28134.1|378412_381001_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	1.7e-33
QBJ28135.1|381096_382104_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
QBJ28136.1|382177_383113_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
QBJ28137.1|383112_383739_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
QBJ28138.1|383731_384523_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	1.4e-68
>prophage 3
CP036499	Vibrio cholerae strain 20000 chromosome 1, complete sequence	2942340	1466839	1473444	2942340		Staphylococcus_phage(66.67%)	7	NA	NA
QBJ29075.1|1466839_1467973_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
QBJ29076.1|1467981_1469235_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.2	9.5e-99
QBJ29077.1|1469334_1469784_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
QBJ29078.1|1469796_1470900_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.9	1.3e-43
QBJ29079.1|1470904_1471558_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
QBJ29080.1|1471598_1472708_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
QBJ29081.1|1472973_1473444_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 1
CP036500	Vibrio cholerae strain 20000 chromosome 2, complete sequence	1110356	286832	347199	1110356	tail,tRNA,capsid,plate,terminase,integrase,transposase,portal	Vibrio_phage(48.48%)	80	287860:287876	323969:323985
QBJ30643.1|286832_287549_-	helix-turn-helix transcriptional regulator	NA	R9TNM0	Vibrio_phage	86.1	3.1e-118
QBJ31385.1|287644_287818_+	hypothetical protein	NA	R9TPV3	Vibrio_phage	78.2	4.6e-20
287860:287876	attL	CTGTATAAATAACCAGT	NA	NA	NA	NA
QBJ30644.1|287887_288433_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30645.1|288613_289597_+	hypothetical protein	NA	A0A067ZIA1	Vibrio_phage	48.1	1.8e-31
QBJ30646.1|289565_289985_+	hypothetical protein	NA	A0A2I7RQ30	Vibrio_phage	32.3	7.0e-06
QBJ30647.1|289984_290617_+	hypothetical protein	NA	A0A2I7RNS2	Vibrio_phage	59.7	1.6e-65
QBJ30648.1|290618_291212_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30649.1|291469_292453_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	33.8	1.1e-28
QBJ30650.1|292454_294074_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
QBJ30651.1|294078_294876_+	TIGR02646 family protein	NA	NA	NA	NA	NA
QBJ30652.1|295008_295221_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30653.1|295201_295729_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	40.7	7.4e-29
QBJ30654.1|295730_296096_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30655.1|296025_296310_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ31386.1|296554_297784_+|integrase	integrase	integrase	A0A067ZJC5	Vibrio_phage	33.3	4.8e-55
QBJ30656.1|298228_298798_+	hypothetical protein	NA	B0ZSE9	Halomonas_phage	38.2	4.9e-26
QBJ31387.1|298808_300761_+|terminase	terminase	terminase	A2I2W6	Vibrio_virus	58.6	1.1e-210
QBJ30657.1|300754_301282_+	hypothetical protein	NA	A2I2W7	Vibrio_virus	31.3	5.3e-11
QBJ30658.1|301281_302850_+|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	42.7	2.5e-117
QBJ30659.1|302806_304786_+|capsid	phage major capsid protein	capsid	A0A1W6JT82	Escherichia_phage	46.8	4.9e-158
QBJ30660.1|304838_305135_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30661.1|305127_305478_+	hypothetical protein	NA	R9TMM0	Vibrio_phage	53.4	4.9e-29
QBJ30662.1|305440_306046_+	hypothetical protein	NA	R9TR34	Vibrio_phage	54.2	7.9e-59
QBJ30663.1|306038_306563_+	hypothetical protein	NA	R9TNK0	Vibrio_phage	35.6	1.0e-22
QBJ30664.1|306559_307207_+|plate	phage baseplate assembly protein V	plate	V5YUM9	Pseudomonas_phage	31.9	6.8e-16
QBJ30665.1|307208_307550_+|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	60.4	1.2e-32
QBJ30666.1|307546_308425_+|plate	phage baseplate protein	plate	R9TML5	Vibrio_phage	47.2	5.5e-69
QBJ30667.1|308424_308982_+|tail	phage tail protein I	tail	R9TR33	Vibrio_phage	62.6	4.1e-62
QBJ30668.1|309826_310372_+	hypothetical protein	NA	A9ZT45	Vibrio_virus	61.6	1.4e-33
QBJ30669.1|310460_311927_+|tail	phage tail protein	tail	R9TMQ0	Vibrio_phage	47.6	1.4e-120
QBJ30670.1|311926_312442_+|tail	phage tail protein	tail	A0A193GYM4	Enterobacter_phage	31.5	4.4e-18
QBJ30671.1|312493_312796_+|tail	phage tail assembly protein	tail	Q75QK8	Wolbachia_phage	39.2	1.4e-08
QBJ30672.1|312899_314681_+|tail	phage tail protein	tail	R9TRP8	Vibrio_phage	41.9	6.5e-109
QBJ30673.1|314680_315076_+|tail	phage tail protein	tail	R9TMP6	Vibrio_phage	48.1	4.7e-28
QBJ30674.1|315059_315266_+|tail	phage tail protein	tail	R9TR63	Vibrio_phage	52.2	4.5e-14
QBJ30675.1|315256_316261_+|tail	phage tail protein	tail	R9TNM7	Vibrio_phage	39.2	4.1e-60
QBJ30676.1|316604_317486_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30677.1|317905_318436_+	type VI secretion system PAAR protein	NA	A0A2R3ZY74	Campylobacter_phage	39.5	1.1e-08
QBJ30678.1|318435_319107_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30679.1|319108_319459_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30680.1|319727_321656_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	2.6e-127
QBJ30681.1|321659_322211_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.1	9.2e-14
QBJ30682.1|322314_322509_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
QBJ30683.1|322550_322904_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
QBJ30684.1|324229_324466_-	RNA-binding protein	NA	NA	NA	NA	NA
323969:323985	attR	ACTGGTTATTTATACAG	NA	NA	NA	NA
QBJ30685.1|324719_325220_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
QBJ30686.1|325356_326304_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30687.1|326461_327205_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
QBJ30688.1|327380_327713_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QBJ30689.1|327699_328014_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBJ30690.1|328133_328796_+	Vat family streptogramin A O-acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	43.5	3.3e-26
QBJ30691.1|328933_329416_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ31388.1|329595_329871_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30692.1|329927_330104_+	acetyltransferase	NA	NA	NA	NA	NA
QBJ30693.1|330496_331012_+	MazG-related protein	NA	NA	NA	NA	NA
QBJ30694.1|331685_332432_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30695.1|332577_333012_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBJ30696.1|333855_334038_+	DUF645 family protein	NA	NA	NA	NA	NA
QBJ30697.1|334368_334590_+	DUF3709 domain-containing protein	NA	NA	NA	NA	NA
QBJ30698.1|334633_334813_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30699.1|335000_335471_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30700.1|335783_336227_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30701.1|336283_336460_+	acetyltransferase	NA	NA	NA	NA	NA
QBJ31390.1|336523_336703_+	DUF645 family protein	NA	NA	NA	NA	NA
QBJ31389.1|337029_337239_+	DUF645 family protein	NA	NA	NA	NA	NA
QBJ30702.1|337389_337533_+	acetyltransferase	NA	NA	NA	NA	NA
QBJ30703.1|337979_338477_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBJ30704.1|338618_339053_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBJ30705.1|339211_339646_+	VOC family protein	NA	NA	NA	NA	NA
QBJ30706.1|339776_340076_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QBJ30707.1|340072_340315_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
QBJ30708.1|340533_341514_+	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
QBJ30709.1|342187_342502_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30710.1|342688_342973_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QBJ30711.1|343122_343683_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ30712.1|343845_344262_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
QBJ30713.1|344417_344900_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBJ30714.1|345036_345687_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ31391.1|345881_346037_+	DUF2805 domain-containing protein	NA	NA	NA	NA	NA
QBJ31392.1|346009_347199_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	68.8	1.5e-122
>prophage 2
CP036500	Vibrio cholerae strain 20000 chromosome 2, complete sequence	1110356	820610	842809	1110356	bacteriocin	Vibrio_phage(33.33%)	26	NA	NA
QBJ31131.1|820610_820823_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	58.6	4.2e-15
QBJ31132.1|821129_823346_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.1	4.1e-60
QBJ31133.1|823478_824957_-	ATPase	NA	M4MHC7	Vibrio_phage	37.0	3.3e-42
QBJ31134.1|824956_825217_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBJ31135.1|825219_825597_-	hypothetical protein	NA	A0A1I9KFD7	Aeromonas_phage	45.0	1.4e-18
QBJ31136.1|825600_826251_-	hypothetical protein	NA	A0A1I9KFE8	Aeromonas_phage	44.2	9.8e-39
QBJ31415.1|826250_826592_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ31137.1|826632_826995_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ31138.1|826999_829132_-	DUF1983 domain-containing protein	NA	A0A2L1IV54	Escherichia_phage	29.8	1.6e-53
QBJ31139.1|829131_830739_-	hypothetical protein	NA	A0A1I9KFD2	Aeromonas_phage	45.0	1.4e-123
QBJ31140.1|830871_831540_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ31141.1|831572_833405_-	hypothetical protein	NA	A0A2I7S7J8	Vibrio_phage	46.7	1.6e-30
QBJ31142.1|833404_834034_-	hypothetical protein	NA	A0A1B1ITG1	uncultured_Mediterranean_phage	30.2	6.0e-17
QBJ31143.1|834033_834633_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ31144.1|834635_835100_-	hypothetical protein	NA	A0A1I9KFH0	Aeromonas_phage	57.7	9.4e-28
QBJ31145.1|835156_835537_-	hypothetical protein	NA	M4MCI2	Vibrio_phage	31.1	1.8e-08
QBJ31146.1|835551_836757_-	DUF4043 family protein	NA	A0A088CC32	Shigella_phage	58.3	2.7e-135
QBJ31147.1|836819_837824_-	ATPase	NA	A0A1I9KFD1	Aeromonas_phage	32.9	5.2e-23
QBJ31416.1|837941_838202_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ31148.1|838213_838792_-	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	36.9	7.9e-24
QBJ31149.1|838794_839016_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ31150.1|839459_839978_-	secretion activator protein	NA	Q6VT55	Vibrio_phage	63.2	1.2e-60
QBJ31151.1|840046_840358_-	hypothetical protein	NA	R9TR41	Vibrio_phage	47.4	2.2e-20
QBJ31152.1|840736_841207_+	low molecular weight phosphatase family protein	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	30.1	4.0e-18
QBJ31153.1|841361_842426_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
QBJ31154.1|842470_842809_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	49.5	3.6e-21
