The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP036358	Agrobacterium sp. 33MFTa1.1 chromosome circular, complete sequence	2771937	603253	610628	2771937	portal,protease,capsid,head,tail	Geobacillus_phage(33.33%)	11	NA	NA
QBJ12474.1|603253_604420_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	38.7	4.6e-63
QBJ12475.1|604607_604928_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ12476.1|604956_605547_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	44.1	1.4e-28
QBJ12477.1|605578_606847_+|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	42.1	6.7e-76
QBJ12478.1|607017_607587_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ12479.1|607590_607932_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
QBJ12480.1|607928_608324_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
QBJ14433.1|608330_609440_-	MFS transporter	NA	NA	NA	NA	NA
QBJ12481.1|609619_610027_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
QBJ12482.1|610026_610386_+	gene transfer agent family protein	NA	NA	NA	NA	NA
QBJ14434.1|610382_610628_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
>prophage 2
CP036358	Agrobacterium sp. 33MFTa1.1 chromosome circular, complete sequence	2771937	1049176	1103571	2771937	portal,protease,capsid,head,terminase,tRNA,integrase,tail	uncultured_Mediterranean_phage(14.29%)	51	1066668:1066686	1109716:1109734
QBJ12860.1|1049176_1050193_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
QBJ12861.1|1050189_1051338_+	nitrogen regulation protein NR(II)	NA	W8CYF6	Bacillus_phage	24.7	2.4e-08
QBJ12862.1|1051334_1052786_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
QBJ12863.1|1052936_1055198_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
QBJ12864.1|1055187_1056552_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
QBJ12865.1|1056600_1057977_+	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
QBJ12866.1|1058161_1058644_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
QBJ14477.1|1058827_1060159_+	GTPase HflX	NA	NA	NA	NA	NA
QBJ12867.1|1060231_1060588_-	VOC family protein	NA	NA	NA	NA	NA
QBJ12868.1|1060599_1061004_-	SRPBCC family protein	NA	NA	NA	NA	NA
QBJ12869.1|1061125_1062709_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
QBJ12870.1|1062705_1063206_+	cation transporter	NA	NA	NA	NA	NA
QBJ12871.1|1063202_1065485_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	29.4	2.4e-71
QBJ12872.1|1065481_1065655_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
QBJ12873.1|1065782_1067213_+	NADP-dependent phosphogluconate dehydrogenase	NA	E3SJC4	Synechococcus_phage	29.6	1.7e-27
1066668:1066686	attL	GATGAGCGCGAAGCTGCCG	NA	NA	NA	NA
QBJ12874.1|1067278_1067602_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ12875.1|1067781_1068813_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA	NA
QBJ12876.1|1071888_1072941_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBJ12877.1|1073001_1074021_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ12878.1|1074125_1075073_+	metal ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	27.4	4.3e-11
QBJ12879.1|1075065_1075884_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
QBJ12880.1|1075880_1076294_+	transcriptional repressor	NA	NA	NA	NA	NA
QBJ12881.1|1076333_1076867_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
QBJ12882.1|1076894_1077584_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
QBJ12883.1|1077721_1078732_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QBJ12884.1|1078738_1079539_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
QBJ12885.1|1079595_1082517_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
QBJ12886.1|1082823_1083360_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	74.2	1.8e-46
QBJ12887.1|1083399_1083657_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ12888.1|1083710_1084859_-	HPP family protein	NA	NA	NA	NA	NA
QBJ12889.1|1084987_1085617_-	MarC family protein	NA	NA	NA	NA	NA
QBJ12890.1|1085833_1088626_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.4	3.6e-98
QBJ12891.1|1088718_1088979_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ12892.1|1089061_1090555_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
QBJ12893.1|1090694_1091414_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ12894.1|1091544_1091808_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ12895.1|1091823_1092051_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ12896.1|1092380_1092545_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ12897.1|1092792_1093647_-	hypothetical protein	NA	A0A1S5S8Z0	Streptococcus_phage	26.8	9.0e-08
QBJ12898.1|1093767_1094082_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ12899.1|1094078_1094438_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ12900.1|1094419_1095625_-|portal	phage portal protein	portal	A4JWZ9	Burkholderia_virus	35.8	1.6e-55
QBJ12901.1|1095611_1096154_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	45.9	8.4e-28
QBJ12902.1|1096150_1096498_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A286S294	Klebsiella_phage	34.4	6.4e-05
QBJ12903.1|1096430_1097672_-|capsid	phage major capsid protein	capsid	K7XS73	uncultured_Mediterranean_phage	34.1	2.2e-39
QBJ12904.1|1098134_1099799_-|terminase	terminase large subunit	terminase	Q9MCV7	Escherichia_phage	41.4	7.4e-91
QBJ12905.1|1099956_1100286_-	HNH endonuclease	NA	NA	NA	NA	NA
QBJ12906.1|1100413_1100671_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ12907.1|1100858_1101950_-	AAA family ATPase	NA	NA	NA	NA	NA
QBJ12908.1|1101952_1102156_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
QBJ12909.1|1102428_1103571_-|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	37.1	3.9e-59
1109716:1109734	attR	GATGAGCGCGAAGCTGCCG	NA	NA	NA	NA
>prophage 3
CP036358	Agrobacterium sp. 33MFTa1.1 chromosome circular, complete sequence	2771937	1270740	1278997	2771937	tRNA	uncultured_Mediterranean_phage(66.67%)	8	NA	NA
QBJ13058.1|1270740_1272273_+	AMP-dependent synthetase	NA	A0A2K9L3I8	Tupanvirus	24.4	4.8e-20
QBJ14492.1|1272352_1273534_+	type III PLP-dependent enzyme	NA	NA	NA	NA	NA
QBJ13059.1|1273534_1274692_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	42.7	9.9e-42
QBJ13060.1|1274883_1276014_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.0	2.1e-105
QBJ13061.1|1276013_1277096_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
QBJ13062.1|1277358_1277868_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	6.5e-46
QBJ13063.1|1277904_1278474_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.8	8.5e-47
QBJ13064.1|1278502_1278997_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.7	1.9e-26
>prophage 4
CP036358	Agrobacterium sp. 33MFTa1.1 chromosome circular, complete sequence	2771937	1295312	1303715	2771937	tRNA	uncultured_Mediterranean_phage(75.0%)	9	NA	NA
QBJ13082.1|1295312_1296923_-	LysM peptidoglycan-binding domain-containing protein	NA	I3PV24	Clostridium_phage	30.4	1.1e-11
QBJ14493.1|1297223_1297865_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1J0MC37	Streptomyces_phage	35.1	1.0e-11
QBJ14494.1|1297873_1298644_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.8	1.8e-23
QBJ13083.1|1298817_1300101_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.8	1.8e-97
QBJ13084.1|1300202_1301006_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	40.7	2.4e-42
QBJ13085.1|1301002_1301749_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
QBJ13086.1|1301805_1302012_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.1e-08
QBJ13087.1|1302142_1302877_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.1	3.4e-40
QBJ13088.1|1302869_1303715_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.5e-34
>prophage 5
CP036358	Agrobacterium sp. 33MFTa1.1 chromosome circular, complete sequence	2771937	1426159	1431693	2771937		Agrobacterium_phage(33.33%)	8	NA	NA
QBJ13196.1|1426159_1426456_-	hypothetical protein	NA	A0A223W0P5	Agrobacterium_phage	62.4	1.5e-34
QBJ13197.1|1426562_1426901_-	theronine dehydrogenase	NA	I3UM57	Rhodobacter_phage	43.6	2.9e-18
QBJ13198.1|1426897_1428817_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ13199.1|1428877_1429246_-	hypothetical protein	NA	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	56.4	2.8e-27
QBJ13200.1|1429302_1430751_-	hypothetical protein	NA	A0A068CCC3	Rhizobium_phage	42.6	3.7e-14
QBJ13201.1|1430768_1431029_-	DUF2312 domain-containing protein	NA	A0A2L0V115	Agrobacterium_phage	78.5	4.2e-25
QBJ13202.1|1431025_1431244_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ13203.1|1431240_1431693_-	hypothetical protein	NA	A0A0K1LLW1	Caulobacter_phage	38.2	5.4e-20
>prophage 1
CP036359	Agrobacterium sp. 33MFTa1.1 chromosome linear, complete sequence	2068443	1800516	1847820	2068443	transposase	Stx2-converting_phage(25.0%)	32	NA	NA
QBJ16062.1|1800516_1802175_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	46.0	6.2e-98
QBJ16063.1|1802171_1802786_+	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	35.1	7.8e-22
QBJ16064.1|1804010_1805312_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	38.6	1.5e-75
QBJ16065.1|1806187_1806685_-	ATP-binding protein	NA	NA	NA	NA	NA
QBJ16385.1|1806866_1807085_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16066.1|1807251_1808019_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16386.1|1808436_1808670_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
QBJ16387.1|1809029_1809980_+	bile acid:sodium symporter family protein	NA	NA	NA	NA	NA
QBJ16067.1|1810029_1811085_-	aldo/keto reductase	NA	NA	NA	NA	NA
QBJ16068.1|1811269_1812175_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16388.1|1812255_1813041_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
QBJ16069.1|1813369_1815133_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	1.4e-50
QBJ16070.1|1815506_1816832_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
QBJ16071.1|1817322_1818600_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
QBJ16072.1|1818956_1820417_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	M4QSA2	Synechococcus_phage	42.3	5.1e-19
QBJ16073.1|1820416_1821403_+	ADP-glyceromanno-heptose 6-epimerase	NA	M4PRR6	Cyanophage	29.9	6.9e-28
QBJ16074.1|1821546_1823226_+	HAD-IIIA family hydrolase	NA	NA	NA	NA	NA
QBJ16075.1|1823266_1825348_+	glycosyltransferase family 9 protein	NA	NA	NA	NA	NA
QBJ16076.1|1825402_1826515_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16077.1|1827263_1827671_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBJ16078.1|1827667_1828015_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	62.6	2.2e-37
QBJ16079.1|1828060_1829716_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	46.1	1.3e-98
QBJ16080.1|1829703_1830723_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QBJ16081.1|1830827_1831100_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ16082.1|1836947_1837292_-	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	30.2	1.0e-07
QBJ16083.1|1837288_1837672_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBJ16084.1|1839019_1839442_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBJ16085.1|1839615_1840509_-	hypothetical protein	NA	U5N3V8	Enterobacteria_phage	33.8	9.0e-35
QBJ16086.1|1840505_1842011_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
QBJ16087.1|1842177_1842900_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	37.9	8.1e-26
QBJ16088.1|1844193_1845378_+	acyltransferase	NA	NA	NA	NA	NA
QBJ16089.1|1846458_1847820_+|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	47.7	4.8e-112
>prophage 1
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	0	2246	496948		Ochrobactrum_phage(100.0%)	1	NA	NA
QBJ16405.1|1220_2246_+	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	33.2	9.1e-31
>prophage 2
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	7006	10151	496948		uncultured_Caudovirales_phage(100.0%)	4	NA	NA
QBJ16411.1|7006_7714_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	72.5	1.0e-86
QBJ16412.1|7706_8129_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	63.5	1.2e-45
QBJ16413.1|8134_9175_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
QBJ16414.1|9620_10151_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	43.3	8.3e-28
>prophage 3
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	22991	24071	496948		Leuconostoc_phage(100.0%)	1	NA	NA
QBJ16422.1|22991_24071_-	NUDIX domain-containing protein	NA	A0A097BYE2	Leuconostoc_phage	29.9	7.1e-18
>prophage 4
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	32977	34303	496948		Burkholderia_virus(100.0%)	1	NA	NA
QBJ16429.1|32977_34303_+	ATP-binding protein	NA	Q6JIF3	Burkholderia_virus	26.9	9.0e-15
>prophage 5
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	37650	38433	496948		Planktothrix_phage(100.0%)	1	NA	NA
QBJ16432.1|37650_38433_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.0	1.2e-27
>prophage 6
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	53318	54089	496948		Bacillus_phage(100.0%)	1	NA	NA
QBJ16445.1|53318_54089_+	amino acid ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.3	3.2e-12
>prophage 7
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	66499	67522	496948		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
QBJ16460.1|66499_67522_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	47.3	4.1e-15
>prophage 8
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	71498	78668	496948		Burkholderia_phage(33.33%)	7	NA	NA
QBJ16467.1|71498_71777_-	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	48.3	2.5e-12
QBJ16468.1|71860_72127_-	WGR domain-containing protein	NA	NA	NA	NA	NA
QBJ16469.1|72223_72664_-	thermonuclease family protein	NA	A0A218ML12	uncultured_virus	35.3	4.8e-05
QBJ16470.1|72660_74631_-	Ti-type conjugative transfer system protein TraG	NA	NA	NA	NA	NA
QBJ16471.1|74617_74863_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
QBJ16472.1|74837_75134_-	TraC family protein	NA	NA	NA	NA	NA
QBJ16473.1|75365_78668_+	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	33.2	2.7e-12
>prophage 9
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	89708	98286	496948	holin,transposase	Mycobacterium_phage(33.33%)	7	NA	NA
QBJ16487.1|89708_90551_+	alpha/beta hydrolase	NA	A0A249XU20	Mycobacterium_phage	26.0	1.7e-06
QBJ16488.1|91005_91875_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16489.1|92118_92502_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBJ16490.1|92498_92843_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBJ16491.1|92916_94509_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	32.9	1.0e-52
QBJ16492.1|94828_96301_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
QBJ16493.1|96603_98286_+|holin	glucose-methanol-choline oxidoreductase	holin	A0A1V0S9J5	Catovirus	31.1	2.3e-55
>prophage 10
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	101824	103717	496948		Planktothrix_phage(100.0%)	1	NA	NA
QBJ16497.1|101824_103717_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	6.2e-17
>prophage 11
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	112762	113221	496948		Acinetobacter_phage(100.0%)	1	NA	NA
QBJ16505.1|112762_113221_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	44.1	3.8e-21
>prophage 12
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	118389	120644	496948		Vibrio_phage(50.0%)	2	NA	NA
QBJ16510.1|118389_119421_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	56.9	3.6e-11
QBJ16511.1|119441_120644_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	28.9	1.6e-34
>prophage 13
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	124109	124601	496948		Pandoravirus(100.0%)	1	NA	NA
QBJ16845.1|124109_124601_-	cupin domain-containing protein	NA	A0A291AU44	Pandoravirus	45.8	1.1e-26
>prophage 14
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	129030	130011	496948		Mycobacterium_phage(100.0%)	1	NA	NA
QBJ16520.1|129030_130011_-	alpha/beta hydrolase	NA	A0A249XU20	Mycobacterium_phage	24.8	1.9e-09
>prophage 15
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	134159	137135	496948	transposase	Salmonella_phage(100.0%)	1	NA	NA
QBJ16525.1|134159_137135_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.7	3.9e-191
>prophage 16
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	158644	161777	496948		Mycobacterium_phage(50.0%)	3	NA	NA
QBJ16545.1|158644_159487_-	alpha/beta hydrolase	NA	A0A249XU20	Mycobacterium_phage	24.2	1.5e-07
QBJ16546.1|159694_160657_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBJ16547.1|160838_161777_-	AraC family transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	29.3	4.1e-06
>prophage 17
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	184119	188043	496948	transposase	Bacillus_virus(50.0%)	3	NA	NA
QBJ16567.1|184119_185184_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	33.2	1.0e-24
QBJ16568.1|185194_187231_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA	NA
QBJ16569.1|187329_188043_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	33.5	2.6e-16
>prophage 18
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	193278	195213	496948		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ16849.1|193278_195213_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	3.2e-13
>prophage 19
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	198489	199503	496948		Enterobacteria_phage(100.0%)	1	NA	NA
QBJ16580.1|198489_199503_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.9	5.8e-14
>prophage 20
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	206058	209423	496948		Planktothrix_phage(50.0%)	3	NA	NA
QBJ16585.1|206058_207771_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	4.7e-16
QBJ16586.1|207782_208568_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
QBJ16587.1|208571_209423_+	2-hydroxy-3-oxopropionate reductase	NA	A0A077SLF7	Escherichia_phage	28.3	3.1e-24
>prophage 21
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	219078	223153	496948		Brazilian_cedratvirus(50.0%)	4	NA	NA
QBJ16594.1|219078_219987_+	alpha/beta hydrolase	NA	A0A2R8FDA5	Brazilian_cedratvirus	28.1	8.9e-06
QBJ16851.1|220180_221098_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBJ16595.1|221393_221987_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16596.1|222739_223153_-	DUF1810 domain-containing protein	NA	A0A2H4UVK5	Bodo_saltans_virus	42.2	1.0e-12
>prophage 22
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	227694	228474	496948		Bacillus_phage(100.0%)	1	NA	NA
QBJ16601.1|227694_228474_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.2	1.5e-06
>prophage 23
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	239298	242113	496948		Trichoplusia_ni_ascovirus(50.0%)	3	NA	NA
QBJ16610.1|239298_240048_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.5	4.9e-18
QBJ16611.1|240059_240908_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16854.1|241276_242113_-	alpha/beta hydrolase	NA	W8EKH7	Mycobacterium_phage	25.5	1.2e-09
>prophage 24
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	247485	250694	496948		Orpheovirus(50.0%)	2	NA	NA
QBJ16616.1|247485_249153_+	FAD-binding protein	NA	A0A2I2L5E1	Orpheovirus	27.3	3.8e-18
QBJ16617.1|249857_250694_+	alpha/beta hydrolase	NA	A0A286MQ79	Mycobacterium_phage	30.0	2.2e-14
>prophage 25
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	268944	269757	496948		Halovirus(100.0%)	1	NA	NA
QBJ16635.1|268944_269757_-	CbbQ/NirQ/NorQ/GpvN family protein	NA	R4TG24	Halovirus	38.2	4.8e-11
>prophage 26
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	276791	277769	496948		Phage_TP(100.0%)	1	NA	NA
QBJ16645.1|276791_277769_+	U32 family peptidase	NA	Q6DW11	Phage_TP	34.5	1.3e-18
>prophage 27
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	281038	286609	496948		Bacillus_virus(50.0%)	6	NA	NA
QBJ16650.1|281038_281791_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.4	3.8e-26
QBJ16651.1|281787_282975_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16652.1|283156_283342_+	periplasmic nitrate reductase, NapE protein	NA	NA	NA	NA	NA
QBJ16653.1|283349_283850_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
QBJ16654.1|283842_284130_+	glutamate synthase	NA	NA	NA	NA	NA
QBJ16655.1|284104_286609_+	periplasmic nitrate reductase subunit alpha	NA	A0A077SK27	Escherichia_phage	22.9	1.3e-09
>prophage 28
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	290541	291318	496948		Sinorhizobium_phage(100.0%)	1	NA	NA
QBJ16661.1|290541_291318_-	SOS response-associated peptidase	NA	A0A291AUP1	Sinorhizobium_phage	38.9	1.2e-40
>prophage 29
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	296471	299729	496948		Streptomyces_phage(100.0%)	1	NA	NA
QBJ16665.1|296471_299729_+	DNA polymerase III subunit alpha	NA	A0A0K1Y8T6	Streptomyces_phage	26.6	2.7e-89
>prophage 30
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	309077	311234	496948		Bacillus_phage(50.0%)	3	NA	NA
QBJ16674.1|309077_309827_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	46.8	2.2e-10
QBJ16675.1|309899_310448_+	flavin reductase family protein	NA	NA	NA	NA	NA
QBJ16676.1|310502_311234_+	SDR family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	29.0	1.2e-08
>prophage 31
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	315966	324108	496948		Trichoplusia_ni_ascovirus(40.0%)	9	NA	NA
QBJ16683.1|315966_316953_+	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	24.0	3.0e-07
QBJ16684.1|316998_317808_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.2	6.1e-14
QBJ16685.1|317854_318235_+	transcriptional regulator	NA	NA	NA	NA	NA
QBJ16858.1|318391_318925_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16686.1|319005_320424_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	34.2	8.9e-45
QBJ16687.1|320512_321268_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.1	1.9e-17
QBJ16688.1|321534_322224_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
QBJ16689.1|322275_323187_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16690.1|323280_324108_+	oxidoreductase	NA	I7B2R4	Escherichia_phage	27.2	3.7e-06
>prophage 32
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	330294	331143	496948		Tupanvirus(100.0%)	1	NA	NA
QBJ16699.1|330294_331143_+	alpha/beta hydrolase	NA	A0A2K9KZN8	Tupanvirus	35.4	1.1e-05
>prophage 33
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	334459	336471	496948		Pandoravirus(50.0%)	3	NA	NA
QBJ16703.1|334459_334888_+	RidA family protein	NA	S4W0G3	Pandoravirus	32.7	1.3e-07
QBJ16704.1|335739_335967_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16705.1|336261_336471_+	cold-shock protein	NA	A0A218MMZ6	uncultured_virus	54.7	1.2e-09
>prophage 34
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	344619	345381	496948		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
QBJ16715.1|344619_345381_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.0	4.1e-12
>prophage 35
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	351079	355189	496948		Bacillus_virus(50.0%)	3	NA	NA
QBJ16721.1|351079_352144_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	4.8e-27
QBJ16722.1|352143_353022_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ16860.1|353062_355189_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.1	7.9e-13
>prophage 36
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	361038	368446	496948		Emiliania_huxleyi_virus(25.0%)	7	NA	NA
QBJ16729.1|361038_363159_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	30.5	4.3e-35
QBJ16730.1|363262_363919_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16731.1|363993_365184_+	DUF932 domain-containing protein	NA	A0A1V0DX75	Synechococcus_virus	42.2	1.5e-72
QBJ16732.1|365290_365545_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16733.1|365672_366125_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ16734.1|366137_367175_+	DNA primase	NA	A0A0U4B0G9	Pseudomonas_phage	36.6	5.1e-13
QBJ16735.1|367504_368446_+	DUF2493 domain-containing protein	NA	A0A291L9X7	Bordetella_phage	41.4	1.1e-19
>prophage 37
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	372178	372457	496948		Burkholderia_phage(100.0%)	1	NA	NA
QBJ16743.1|372178_372457_-	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	42.5	2.6e-09
>prophage 38
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	379939	381442	496948		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ16748.1|379939_381442_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	64.9	9.8e-167
>prophage 39
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	385851	393544	496948	transposase	uncultured_virus(50.0%)	6	NA	NA
QBJ16753.1|385851_386166_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	56.4	1.8e-22
QBJ16754.1|386220_387846_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	60.7	5.4e-179
QBJ16862.1|388336_389926_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	2.9e-20
QBJ16755.1|389948_391079_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
QBJ16756.1|391071_392040_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
QBJ16757.1|392309_393544_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	63.5	7.2e-99
>prophage 40
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	399012	399764	496948	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
QBJ16761.1|399012_399764_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.7	1.9e-25
>prophage 41
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	418207	422249	496948		Leptospira_phage(50.0%)	2	NA	NA
QBJ16779.1|418207_421309_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	20.9	3.8e-40
QBJ16780.1|421412_422249_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	23.2	2.8e-06
>prophage 42
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	435083	437362	496948	transposase	Mycobacterium_phage(33.33%)	3	NA	NA
QBJ16865.1|435083_435914_+	alpha/beta hydrolase	NA	W0LK50	Mycobacterium_phage	30.1	8.7e-16
QBJ16791.1|436083_436843_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	36.4	2.9e-10
QBJ16792.1|436942_437362_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	49.5	2.1e-18
>prophage 43
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	442637	453120	496948		Bacillus_virus(33.33%)	8	NA	NA
QBJ16799.1|442637_444269_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.3	3.8e-15
QBJ16800.1|444265_445795_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ16867.1|446101_446755_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBJ16801.1|446889_449556_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	22.6	7.6e-05
QBJ16868.1|449601_449853_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ16802.1|450483_450873_+	response regulator	NA	NA	NA	NA	NA
QBJ16803.1|450972_452154_+	HlyD family secretion protein	NA	NA	NA	NA	NA
QBJ16804.1|451968_453120_-	hypothetical protein	NA	M1HMU5	Paramecium_bursaria_Chlorella_virus	24.5	3.5e-07
>prophage 44
CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	496948	481153	489030	496948		Sinorhizobium_phage(20.0%)	8	NA	NA
QBJ16826.1|481153_483805_+	DNA ligase D	NA	A0A291AUV6	Sinorhizobium_phage	38.9	6.1e-47
QBJ16827.1|483817_484093_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ16828.1|484103_484403_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
QBJ16829.1|484470_484947_-	Hsp20 family protein	NA	A0A2L0V0Y9	Agrobacterium_phage	42.5	3.6e-22
QBJ16830.1|485077_486148_-	ATP-dependent DNA ligase	NA	A0A068CDF3	Rhizobium_phage	69.3	2.3e-133
QBJ16831.1|486144_486957_-	Ku protein	NA	NA	NA	NA	NA
QBJ16873.1|486968_487868_-	Ku protein	NA	A0A0A1EPK3	Mycobacterium_phage	27.3	2.0e-13
QBJ16832.1|488253_489030_+	exodeoxyribonuclease III	NA	A0A0N9QXX6	Chrysochromulina_ericina_virus	27.0	2.1e-16
