The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	0	8810	5021016		Catovirus(100.0%)	5	NA	NA
QBJ07480.1|614_3341_+	YdbH family protein	NA	NA	NA	NA	NA
QBJ07481.1|3337_3532_+	YnbE family lipoprotein	NA	NA	NA	NA	NA
QBJ07482.1|3588_3894_+	DUF1318 domain-containing protein	NA	NA	NA	NA	NA
QBJ07483.1|4015_4633_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
QBJ07484.1|4934_8810_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	31.2	5.3e-55
>prophage 2
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	12401	13745	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ07488.1|12401_13745_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	27.7	7.0e-15
>prophage 3
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	44911	46006	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ07518.1|44911_46006_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	4.4e-23
>prophage 4
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	55715	56465	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ07527.1|55715_56465_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.2	5.6e-30
>prophage 5
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	61637	63224	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ07531.1|61637_63224_+	L-arabinose ABC transporter ATP-binding protein AraG	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	7.0e-14
>prophage 6
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	87826	101837	5021016		Bacillus_virus(57.14%)	12	NA	NA
QBJ07550.1|87826_88708_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	27.5	2.7e-23
QBJ07551.1|88707_89493_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	42.6	6.1e-35
QBJ07552.1|89616_91167_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	2.9e-81
QBJ11756.1|91224_92913_+	urocanate hydratase	NA	NA	NA	NA	NA
QBJ07553.1|93086_94253_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.4	5.5e-16
QBJ07554.1|94249_95401_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
QBJ07555.1|95477_96563_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
QBJ07556.1|96805_97576_-	glucose 1-dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	27.7	4.4e-14
QBJ07557.1|97575_98898_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ07558.1|98900_100241_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
QBJ07559.1|100257_101028_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.2	4.9e-29
QBJ07560.1|101027_101837_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	30.5	3.9e-29
>prophage 7
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	106617	107382	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ07565.1|106617_107382_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	6.3e-21
>prophage 8
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	125694	126300	5021016		Citrobacter_phage(100.0%)	1	NA	NA
QBJ07583.1|125694_126300_+	lytic transglycosylase	NA	A0A0E3M1M4	Citrobacter_phage	35.1	5.4e-07
>prophage 9
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	137048	137720	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ07595.1|137048_137720_+	iron ABC transporter ATP-binding protein FetA	NA	G9BWD6	Planktothrix_phage	30.1	2.7e-15
>prophage 10
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	142911	148800	5021016		Acinetobacter_phage(66.67%)	4	NA	NA
QBJ07601.1|142911_143979_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.2	7.0e-26
QBJ07602.1|144222_144993_-	xanthine dehydrogenase accessory protein XdhC	NA	NA	NA	NA	NA
QBJ07603.1|145004_147404_-	xanthine dehydrogenase molybdopterin binding subunit	NA	A0A0P0I429	Acinetobacter_phage	48.8	3.8e-205
QBJ07604.1|147396_148800_-	xanthine dehydrogenase small subunit	NA	A0A0P0IVM8	Acinetobacter_phage	46.1	2.4e-106
>prophage 11
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	157461	163486	5021016		Bacillus_virus(33.33%)	6	NA	NA
QBJ07613.1|157461_158556_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.8	2.4e-21
QBJ07614.1|158581_159637_+	aldo/keto reductase	NA	NA	NA	NA	NA
QBJ07615.1|159763_160513_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA	NA
QBJ07616.1|160641_161937_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	38.5	1.9e-70
QBJ07617.1|162249_163155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ07618.1|163159_163486_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.9	3.2e-22
>prophage 12
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	173335	174505	5021016		Stx2-converting_phage(100.0%)	1	NA	NA
QBJ07630.1|173335_174505_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	54.9	1.9e-117
>prophage 13
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	180636	181581	5021016		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
QBJ07634.1|180636_181581_-	2-hydroxyacid dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	25.7	4.2e-14
>prophage 14
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	188293	189319	5021016		Escherichia_phage(100.0%)	1	NA	NA
QBJ07640.1|188293_189319_-	TerC/Alx family metal homeostasis membrane protein	NA	A0A291LBC5	Escherichia_phage	45.0	4.9e-69
>prophage 15
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	201406	203007	5021016		Planktothrix_phage(100.0%)	2	NA	NA
QBJ07648.1|201406_202237_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.3	3.5e-09
QBJ07649.1|202233_203007_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	3.5e-19
>prophage 16
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	213351	219205	5021016		uncultured_Caudovirales_phage(33.33%)	6	NA	NA
QBJ07657.1|213351_215019_+	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	22.2	2.9e-18
QBJ07658.1|215082_215937_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.1	3.0e-48
QBJ07659.1|216032_216842_-	tetratricopeptide repeat-containing protein	NA	NA	NA	NA	NA
QBJ11759.1|216844_217234_-	siroheme synthase	NA	NA	NA	NA	NA
QBJ07660.1|217253_218123_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
QBJ07661.1|218122_219205_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	41.4	4.8e-06
>prophage 17
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	222412	223360	5021016		Tupanvirus(100.0%)	1	NA	NA
QBJ07665.1|222412_223360_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	38.5	9.2e-46
>prophage 18
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	230893	232375	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ07671.1|230893_232375_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	33.9	6.2e-65
>prophage 19
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	236681	238561	5021016		Bacillus_phage(100.0%)	2	NA	NA
QBJ07675.1|236681_237866_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	22.9	4.3e-16
QBJ07676.1|237862_238561_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.3	2.4e-27
>prophage 20
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	258254	261032	5021016		Lactobacillus_phage(100.0%)	1	NA	NA
QBJ07690.1|258254_261032_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	33.2	6.4e-47
>prophage 21
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	271586	273215	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ07699.1|271586_273215_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	9.7e-19
>prophage 22
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	308851	309910	5021016		Tupanvirus(100.0%)	1	NA	NA
QBJ07734.1|308851_309910_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	44.5	8.1e-83
>prophage 23
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	313710	318624	5021016		Catovirus(50.0%)	5	NA	NA
QBJ07739.1|313710_315255_-	aromatic amino acid lyase	NA	A0A1V0S940	Catovirus	33.6	3.4e-66
QBJ07740.1|315251_316136_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ07741.1|316170_316878_-	ABC transporter permease	NA	NA	NA	NA	NA
QBJ07742.1|316874_317525_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
QBJ07743.1|317529_318624_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.9	2.6e-23
>prophage 24
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	323050	323398	5021016		Vibrio_phage(100.0%)	1	NA	NA
QBJ07748.1|323050_323398_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	64.2	1.6e-16
>prophage 25
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	340055	340853	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ07759.1|340055_340853_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.9	2.7e-30
>prophage 26
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	353556	360765	5021016		Enterobacteria_phage(25.0%)	5	NA	NA
QBJ07770.1|353556_354585_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	30.0	4.1e-23
QBJ07771.1|355009_357094_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	28.7	3.0e-12
QBJ07772.1|357903_358638_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ07773.1|358630_359653_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	5.3e-15
QBJ07774.1|359649_360765_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.8	1.3e-14
>prophage 27
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	375134	376769	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ07786.1|375134_376769_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.8e-15
>prophage 28
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	389400	397122	5021016		Planktothrix_phage(33.33%)	5	NA	NA
QBJ07798.1|389400_391269_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	7.2e-18
QBJ07799.1|391299_392265_-	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA	NA
QBJ07800.1|392264_393275_-	DUF1611 domain-containing protein	NA	NA	NA	NA	NA
QBJ07801.1|393557_394637_-	porin	NA	Q1MVN1	Enterobacteria_phage	50.9	2.9e-96
QBJ07802.1|395409_397122_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	1.2e-51
>prophage 29
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	401105	402641	5021016		Escherichia_phage(100.0%)	1	NA	NA
QBJ07809.1|401105_402641_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	34.0	7.0e-19
>prophage 30
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	409945	413143	5021016		Escherichia_phage(66.67%)	4	NA	NA
QBJ07813.1|409945_410260_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	61.0	2.3e-30
QBJ07814.1|410313_410631_+	addiction module antidote protein, HigA family	NA	A0A222YWD7	Escherichia_phage	60.6	5.6e-32
QBJ07815.1|410745_412323_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ07816.1|412465_413143_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	30.0	3.4e-18
>prophage 31
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	420759	423357	5021016		Erwinia_phage(50.0%)	3	NA	NA
QBJ07824.1|420759_421548_-	phosphate starvation-inducible protein PhoH	NA	A0A1B2ICF6	Erwinia_phage	73.0	9.6e-89
QBJ07825.1|421611_422025_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ07826.1|422208_423357_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	29.3	1.5e-18
>prophage 32
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	433617	434370	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ07832.1|433617_434370_-	L-cystine ABC transporter ATP-binding protein YecC	NA	W8CYL7	Bacillus_phage	34.9	2.7e-16
>prophage 33
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	446219	446420	5021016		Salmonella_phage(100.0%)	1	NA	NA
QBJ07849.1|446219_446420_+	hypothetical protein	NA	S4TWN3	Salmonella_phage	54.5	1.5e-14
>prophage 34
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	461813	471119	5021016		Streptococcus_phage(25.0%)	10	NA	NA
QBJ07868.1|461813_462944_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	27.7	3.0e-27
QBJ07869.1|463028_463475_-	DUF2593 family protein	NA	NA	NA	NA	NA
QBJ07870.1|463542_464388_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
QBJ07871.1|464384_465338_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
QBJ07872.1|465350_466484_-	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.4	3.8e-30
QBJ07873.1|466751_467861_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
QBJ07874.1|468292_468775_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
QBJ07875.1|468923_469826_-	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	33.5	7.2e-40
QBJ07876.1|469844_470567_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
QBJ07877.1|470852_471119_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	70.5	7.8e-27
>prophage 35
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	474430	477330	5021016		Erwinia_phage(50.0%)	5	NA	NA
QBJ07881.1|474430_474796_+	DUF2778 domain-containing protein	NA	A0A1S6L3A5	Erwinia_phage	42.4	5.7e-20
QBJ07882.1|474759_475236_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ07883.1|475296_475608_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ07884.1|475693_476059_-	bleomycin resistance protein	NA	NA	NA	NA	NA
QBJ11767.1|476220_477330_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.4	9.6e-111
>prophage 36
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	480955	482167	5021016		Stx2-converting_phage(100.0%)	1	NA	NA
QBJ07889.1|480955_482167_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	46.6	5.2e-94
>prophage 37
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	486124	487408	5021016		Burkholderia_virus(100.0%)	1	NA	NA
QBJ07894.1|486124_487408_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	39.1	1.7e-71
>prophage 38
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	496585	498091	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ11768.1|496585_498091_-	xylose ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	2.2e-17
>prophage 39
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	506940	508503	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ07908.1|506940_508503_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	NA	A0A2H4PQG7	Staphylococcus_phage	29.2	4.2e-19
>prophage 40
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	512687	517642	5021016		Synechococcus_phage(33.33%)	4	NA	NA
QBJ07911.1|512687_513353_-	fructose-6-phosphate aldolase	NA	I3ULK3	Synechococcus_phage	30.1	3.3e-26
QBJ07912.1|513500_514400_+	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
QBJ07913.1|514405_516838_+	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	NA	Q76Z52	Aeromonas_virus	50.0	3.9e-08
QBJ07914.1|516898_517642_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	26.8	9.2e-17
>prophage 41
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	523545	524136	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ07922.1|523545_524136_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	46.8	7.3e-41
>prophage 42
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	528397	532868	5021016	protease	Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
QBJ07925.1|528397_530995_-	type I DNA topoisomerase	NA	E3T4K4	Cafeteria_roenbergensis_virus	36.7	3.7e-89
QBJ07926.1|531458_531710_+	DUF2498 family protein	NA	NA	NA	NA	NA
QBJ07927.1|531824_532868_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.1	1.1e-18
>prophage 43
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	540531	541651	5021016	transposase	Leptospira_phage(100.0%)	1	NA	NA
QBJ07936.1|540531_541651_+|transposase	IS3-like element ISRaq1 family transposase	transposase	S5WIU1	Leptospira_phage	42.4	5.1e-51
>prophage 44
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	546697	549669	5021016		Acinetobacter_phage(100.0%)	3	NA	NA
QBJ07940.1|546697_547276_+	glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	38.0	3.0e-31
QBJ07941.1|547287_548301_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	37.3	9.8e-54
QBJ07942.1|548304_549669_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.9	1.2e-35
>prophage 45
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	563040	565091	5021016		Bacillus_virus(50.0%)	2	NA	NA
QBJ07959.1|563040_564078_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.9	2.3e-13
QBJ11773.1|564074_565091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	4.5e-14
>prophage 46
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	573920	584098	5021016		Enterobacteria_phage(20.0%)	9	NA	NA
QBJ11774.1|573920_574529_-	thymidine kinase	NA	A7XF40	Enterobacteria_phage	57.3	1.3e-56
QBJ07965.1|575152_575560_+	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA	NA
QBJ07966.1|575761_576769_-	NAD-dependent epimerase	NA	A0A0K0KW07	Prochlorococcus_phage	30.7	2.6e-14
QBJ07967.1|576778_578122_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	37.5	2.1e-80
QBJ07968.1|578337_579351_-	two-component system response regulator RssB	NA	NA	NA	NA	NA
QBJ07969.1|579447_580359_-	patatin-like phospholipase RssA	NA	NA	NA	NA	NA
QBJ07970.1|580507_580972_+	YchJ family protein	NA	NA	NA	NA	NA
QBJ07971.1|581015_581864_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	40.2	1.0e-11
QBJ07972.1|582265_584098_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	2.7e-17
>prophage 47
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	605221	607206	5021016		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
QBJ07992.1|605221_606178_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	21.8	9.7e-11
QBJ07993.1|606177_607206_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.6e-17
>prophage 48
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	616380	617490	5021016		Mycoplasma_phage(100.0%)	1	NA	NA
QBJ08001.1|616380_617490_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	49.4	4.3e-18
>prophage 49
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	623668	627256	5021016		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
QBJ08008.1|623668_624619_-	2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	23.6	4.8e-10
QBJ08009.1|624628_625945_-	MFS transporter	NA	NA	NA	NA	NA
QBJ08010.1|626107_627256_-	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	35.2	4.1e-56
>prophage 50
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	652257	652995	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ08035.1|652257_652995_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.8	1.5e-35
>prophage 51
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	657997	659152	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ08041.1|657997_659152_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.0	2.5e-21
>prophage 52
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	662982	664589	5021016		Staphylococcus_phage(50.0%)	2	NA	NA
QBJ08044.1|662982_663699_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.0	5.0e-12
QBJ08045.1|663695_664589_-	ATP-binding cassette domain-containing protein	NA	A0A285PWH2	Cedratvirus	26.7	4.8e-12
>prophage 53
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	668871	674333	5021016		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
QBJ08050.1|668871_670701_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.1	5.2e-13
QBJ08051.1|671043_672018_-	porphobilinogen synthase	NA	NA	NA	NA	NA
QBJ08052.1|672233_674333_-	peptidase domain-containing ABC transporter	NA	A0A1V0SE00	Indivirus	26.9	9.3e-14
>prophage 54
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	686867	688669	5021016		Planktothrix_phage(50.0%)	2	NA	NA
QBJ08064.1|686867_687860_+	peptide ABC transporter ATP-binding protein SapD	NA	G9BWD6	Planktothrix_phage	26.3	1.2e-06
QBJ08065.1|687859_688669_+	peptide ABC transporter ATP-binding protein SapF	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	2.5e-15
>prophage 55
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	701679	702954	5021016	tRNA	Cronobacter_phage(100.0%)	1	NA	NA
QBJ08076.1|701679_702954_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.5	9.4e-86
>prophage 56
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	710181	711078	5021016		Indivirus(100.0%)	1	NA	NA
QBJ08084.1|710181_711078_-	aldo/keto reductase family oxidoreductase	NA	A0A1V0SDE7	Indivirus	28.1	1.9e-08
>prophage 57
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	715226	722274	5021016		Streptomyces_phage(20.0%)	7	NA	NA
QBJ08089.1|715226_716126_+	hydrolase	NA	A0A2H5BMT3	Streptomyces_phage	41.9	4.1e-19
QBJ08090.1|716291_716411_-	YnhF family membrane protein	NA	NA	NA	NA	NA
QBJ08091.1|716714_717740_+	HTH-type transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	30.1	1.7e-29
QBJ08092.1|717776_718682_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ08093.1|718818_720030_+	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.7	6.5e-12
QBJ08094.1|720390_721542_+	cyclopropane fatty acyl phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	44.0	8.8e-83
QBJ08095.1|721620_722274_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	34.7	5.8e-23
>prophage 58
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	728727	734035	5021016		environmental_halophage(33.33%)	5	NA	NA
QBJ08101.1|728727_729948_-	cysteine desulfurase SufS	NA	Q2XUY6	environmental_halophage	39.6	4.3e-88
QBJ08102.1|729947_731249_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
QBJ08103.1|731223_731970_-	Fe-S cluster assembly ATPase SufC	NA	A0A285PWH2	Cedratvirus	30.9	2.2e-10
QBJ08104.1|732093_733617_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
QBJ08105.1|733663_734035_-	Fe-S cluster assembly scaffold SufA	NA	A0A218MM00	uncultured_virus	35.3	1.6e-14
>prophage 59
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	740363	745245	5021016		Hokovirus(50.0%)	3	NA	NA
QBJ08111.1|740363_742739_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	37.2	2.5e-172
QBJ08112.1|743247_744069_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
QBJ08113.1|744198_745245_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B5IW14	Pandoravirus	44.3	2.4e-79
>prophage 60
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	748476	753742	5021016		Pithovirus(33.33%)	5	NA	NA
QBJ08116.1|748476_749265_+	heme ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.1	8.3e-16
QBJ08117.1|749311_750766_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	33.8	1.6e-60
QBJ08118.1|750908_751637_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBJ08119.1|752152_753166_-	lipoate--protein ligase	NA	NA	NA	NA	NA
QBJ08120.1|753262_753742_-	endopeptidase	NA	A0A217EQL1	Bacillus_phage	37.9	4.4e-12
>prophage 61
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	757194	890476	5021016	holin,lysis,capsid,protease,tRNA,head,tail,integrase,plate	Erwinia_phage(29.41%)	133	781502:781520	852161:852179
QBJ08125.1|757194_759177_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	NA	A0A2K9KZK0	Tupanvirus	24.6	2.8e-20
QBJ08126.1|759176_760157_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	NA	A8CG95	Salmonella_phage	32.7	1.1e-33
QBJ08127.1|760156_761299_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	NA	A0A2K9L0G1	Tupanvirus	28.9	5.0e-30
QBJ11781.1|761647_762397_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	29.3	1.6e-08
QBJ08128.1|762416_762968_-	glutathione peroxidase	NA	A0A1S7DMQ0	Molluscum_contagiosum_virus	41.6	9.2e-14
QBJ08129.1|763041_764049_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
QBJ08130.1|764202_764601_-	DUF2502 domain-containing protein	NA	NA	NA	NA	NA
QBJ08131.1|765381_765678_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	3.2e-13
QBJ08132.1|765682_768070_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
QBJ08133.1|768084_769068_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	7.6e-35
QBJ08134.1|769193_769283_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
QBJ08135.1|769417_769774_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
QBJ08136.1|769816_770014_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
QBJ08137.1|770109_770661_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	5.8e-16
QBJ08138.1|770664_772593_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.2	5.7e-127
QBJ08139.1|772882_773563_+	MarC family NAAT transporter	NA	NA	NA	NA	NA
QBJ08140.1|773586_774222_-	lytic transglycosylase	NA	NA	NA	NA	NA
QBJ08141.1|774544_775414_+	fructosamine kinase family protein	NA	NA	NA	NA	NA
QBJ08142.1|775519_776068_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08143.1|776261_776927_+	hexitol phosphatase HxpB	NA	NA	NA	NA	NA
QBJ08144.1|777235_778072_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA	NA
QBJ08145.1|778149_778911_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.1	2.7e-16
QBJ08146.1|779063_779621_+	metal-dependent hydrolase	NA	A0A127AVX7	Bacillus_phage	34.2	4.2e-06
QBJ08147.1|779810_781202_+	L-cystine transporter	NA	NA	NA	NA	NA
QBJ08148.1|781289_782081_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
781502:781520	attL	CCTGCGCGCGAACCTGATC	NA	NA	NA	NA
QBJ08149.1|782320_783718_+	MFS transporter	NA	NA	NA	NA	NA
QBJ08150.1|783774_784656_-|protease	protease HtpX	protease	NA	NA	NA	NA
QBJ08151.1|784915_786988_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.2	2.6e-85
QBJ08152.1|787007_787697_-	RNA chaperone ProQ	NA	Q2A0A1	Sodalis_phage	43.0	2.9e-09
QBJ08153.1|787792_788290_-	GAF domain-containing protein	NA	NA	NA	NA	NA
QBJ08154.1|788547_789795_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
QBJ08155.1|789763_792394_+	PqiB family protein	NA	NA	NA	NA	NA
QBJ08156.1|792478_793996_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
QBJ08157.1|794367_796089_+	diguanylate cyclase	NA	NA	NA	NA	NA
QBJ08158.1|796286_796529_+	DUF1480 family protein	NA	NA	NA	NA	NA
QBJ08159.1|796572_797223_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08160.1|797321_797714_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
QBJ08161.1|797811_800652_-	WG repeat-containing protein	NA	NA	NA	NA	NA
QBJ08162.1|800651_803414_-	WG repeat-containing protein	NA	NA	NA	NA	NA
QBJ08163.1|803930_804188_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
QBJ08164.1|804552_805731_+	amidohydrolase	NA	NA	NA	NA	NA
QBJ08165.1|805727_806426_-	extensin family protein	NA	NA	NA	NA	NA
QBJ08166.1|806768_807395_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
QBJ08167.1|807994_809650_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.0	1.1e-12
QBJ08168.1|810029_812009_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	45.4	1.4e-160
QBJ08169.1|812067_812856_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08170.1|813056_813968_-	cation transporter	NA	NA	NA	NA	NA
QBJ11782.1|814676_814811_+	hypothetical protein	NA	A0A0U4JIT5	Pseudomonas_phage	56.8	1.1e-05
QBJ08171.1|815014_815428_-	hypothetical protein	NA	A0A222YWI5	Escherichia_phage	46.8	3.4e-21
QBJ08172.1|815806_817387_+	hypothetical protein	NA	Q2P9X8	Enterobacteria_phage	26.9	5.7e-08
QBJ08173.1|817373_818258_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08174.1|818578_819445_-	phage repressor protein CI	NA	Q6K1G0	Salmonella_virus	43.2	1.1e-56
QBJ08175.1|819559_819976_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08176.1|820007_820514_+	hypothetical protein	NA	A0A218M4I4	Erwinia_phage	51.2	1.8e-40
QBJ08177.1|820516_820687_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
QBJ08178.1|820694_820997_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11783.1|821114_821342_+	DUF2732 family protein	NA	NA	NA	NA	NA
QBJ08179.1|821344_821569_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	50.0	2.9e-14
QBJ08180.1|823843_824248_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08181.1|825184_825625_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08182.1|825626_826037_+	TIR domain-containing protein	NA	NA	NA	NA	NA
QBJ08183.1|826101_826758_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08184.1|827509_828019_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08185.1|830408_831416_+|capsid	phage major capsid protein, P2 family	capsid	F1BUQ8	Erwinia_phage	72.2	2.0e-123
QBJ08186.1|831419_832076_+	hypothetical protein	NA	F1BUQ7	Erwinia_phage	60.9	2.3e-67
QBJ08187.1|832171_832642_+|head	head completion/stabilization protein	head	F1BUQ6	Erwinia_phage	50.3	5.2e-34
QBJ08188.1|832641_832845_+|tail	phage tail protein	tail	F1BUQ5	Erwinia_phage	62.7	7.8e-19
QBJ08189.1|832850_833060_+	hypothetical protein	NA	F1BUQ4	Erwinia_phage	51.7	1.5e-09
QBJ08190.1|833040_833550_+	lysozyme	NA	A0A218M4K3	Erwinia_phage	62.7	2.4e-53
QBJ08191.1|833549_833975_+|lysis	LysB family phage lysis regulatory protein	lysis	F1BUQ1	Erwinia_phage	47.4	4.0e-25
QBJ11784.1|833913_834108_+|holin	holin	holin	F1BUQ0	Erwinia_phage	51.6	1.8e-12
QBJ08192.1|834070_834538_+|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	65.8	9.4e-52
QBJ08193.1|834530_834989_+	phage virion morphogenesis protein	NA	F1BUP7	Erwinia_phage	66.0	6.0e-43
QBJ08194.1|835230_836538_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08195.1|836950_837592_+|plate	phage baseplate assembly protein V	plate	A0A0F7LBP2	Escherichia_phage	57.1	3.1e-61
QBJ08196.1|837588_837939_+|plate	baseplate assembly protein	plate	F1BUP4	Erwinia_phage	67.2	2.0e-38
QBJ08197.1|837941_838850_+|plate	baseplate assembly protein	plate	S4TNY7	Salmonella_phage	76.8	1.3e-121
QBJ08198.1|838842_839370_+|tail	phage tail protein I	tail	Q37841	Escherichia_phage	77.7	4.7e-76
QBJ08199.1|839379_841779_+|tail	phage tail protein	tail	Q858V4	Yersinia_virus	40.7	4.8e-75
QBJ08200.1|841788_842244_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	49.2	2.5e-25
QBJ08201.1|842406_843576_+|tail	phage tail sheath protein	tail	F1BUU3	Erwinia_phage	77.4	2.5e-178
QBJ08202.1|843589_844099_+|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	70.9	2.8e-65
QBJ08203.1|844157_844439_+|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	60.2	1.5e-23
QBJ08204.1|844471_844594_+|tail	GpE family phage tail protein	tail	Q858U8	Yersinia_virus	76.3	1.4e-10
QBJ08205.1|845587_846001_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBJ11785.1|846410_846776_-	hypothetical protein	NA	R9TR46	Vibrio_phage	50.0	6.5e-16
QBJ08206.1|847029_847209_+|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	69.1	1.2e-12
QBJ08207.1|847517_847853_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
QBJ08208.1|847904_848789_-	copper resistance D family protein	NA	NA	NA	NA	NA
QBJ08209.1|848792_849176_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08210.1|849317_849824_-	non-heme ferritin	NA	NA	NA	NA	NA
QBJ08211.1|850230_850461_+	DNA polymerase III subunit theta	NA	A0A1P8DTI0	Proteus_phage	66.7	4.5e-15
QBJ08212.1|850480_851437_-	prolyl aminopeptidase	NA	NA	NA	NA	NA
QBJ08213.1|851933_853973_-	oligopeptidase B	NA	NA	NA	NA	NA
852161:852179	attR	CCTGCGCGCGAACCTGATC	NA	NA	NA	NA
QBJ08214.1|854104_854470_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08215.1|854631_856014_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.5	7.6e-57
QBJ08216.1|856264_857443_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
QBJ08217.1|857533_857716_-	YoaH family protein	NA	NA	NA	NA	NA
QBJ08218.1|857877_859254_+	aminodeoxychorismate synthase component 1	NA	S4VNU7	Pandoravirus	38.5	6.4e-40
QBJ08219.1|859250_859853_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
QBJ08220.1|860060_861425_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
QBJ08221.1|861881_863474_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
QBJ08222.1|863550_865110_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	44.7	4.3e-40
QBJ08223.1|865701_866664_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
QBJ08224.1|866754_867552_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
QBJ08225.1|867563_868406_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
QBJ08226.1|868512_868971_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
QBJ08227.1|869181_869754_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
QBJ08228.1|869745_870567_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
QBJ08229.1|870714_871416_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
QBJ08230.1|871475_871685_-	cold shock-like protein CspC	NA	A0A1W6JNX5	Morganella_phage	79.7	5.3e-23
QBJ08231.1|871726_871843_-	DUF2627 domain-containing protein	NA	NA	NA	NA	NA
QBJ08232.1|872966_873956_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBJ08233.1|874143_874434_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08234.1|874494_874731_-	DUF4060 family protein	NA	NA	NA	NA	NA
QBJ08235.1|874866_875169_-	DUF2591 domain-containing protein	NA	A0A2I7R3U5	Vibrio_phage	48.4	1.9e-08
QBJ08236.1|875318_875591_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08237.1|875735_875978_-	PhoP regulon feedback inhibition membrane protein MgrB	NA	NA	NA	NA	NA
QBJ08238.1|876650_879344_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
QBJ08239.1|879527_879764_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08240.1|879827_880073_-	DUF2766 domain-containing protein	NA	NA	NA	NA	NA
QBJ08241.1|880274_880466_+	DUF1482 family protein	NA	NA	NA	NA	NA
QBJ08242.1|880593_882234_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
QBJ08243.1|882373_882589_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08244.1|882657_882945_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ11786.1|883242_883476_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08245.1|883628_884126_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08246.1|884467_885721_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	85.2	4.1e-17
QBJ08247.1|885853_886480_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
QBJ08248.1|886472_886919_+	NUDIX hydrolase	NA	NA	NA	NA	NA
QBJ08249.1|887155_888265_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QBJ08250.1|888455_889082_+	lysogenization regulator HflD	NA	NA	NA	NA	NA
QBJ08251.1|889105_890476_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	7.7e-110
>prophage 62
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	898765	901598	5021016		Vibrio_phage(50.0%)	3	NA	NA
QBJ08258.1|898765_899593_-	NAD-dependent protein deacylase	NA	A0A2I7S9Y2	Vibrio_phage	32.7	2.2e-19
QBJ08259.1|899643_900894_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
QBJ08260.1|900893_901598_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	42.8	1.2e-37
>prophage 63
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	915733	917400	5021016		Streptococcus_virus(50.0%)	2	NA	NA
QBJ08272.1|915733_916753_-	DNA polymerase III subunit delta'	NA	A0A1U9WR94	Streptococcus_virus	31.9	4.4e-09
QBJ08273.1|916749_917400_-	dTMP kinase	NA	H9EB73	Vibrio_phage	33.7	2.0e-15
>prophage 64
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	920799	921924	5021016		Ralstonia_phage(50.0%)	2	NA	NA
QBJ08277.1|920799_921036_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	47.1	3.8e-09
QBJ08278.1|921189_921924_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.1	3.8e-15
>prophage 65
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	932981	933236	5021016		Enterobacteria_phage(100.0%)	1	NA	NA
QBJ08289.1|932981_933236_+	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	55.1	1.0e-15
>prophage 66
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	946145	947081	5021016		Morganella_phage(100.0%)	1	NA	NA
QBJ08300.1|946145_947081_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	47.9	8.2e-71
>prophage 67
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	961689	962810	5021016	transposase	Leptospira_phage(100.0%)	1	NA	NA
QBJ08313.1|961689_962810_-|transposase	IS3-like element ISRaq1 family transposase	transposase	S5WIU1	Leptospira_phage	42.4	5.1e-51
>prophage 68
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	966200	970189	5021016		Enterobacteria_phage(50.0%)	5	NA	NA
QBJ08319.1|966200_966965_-	DNA-binding transcriptional repressor DeoR	NA	A0A077SK06	Escherichia_phage	29.0	2.8e-16
QBJ08320.1|967049_967709_-	serine/threonine-protein phosphatase	NA	K7P6H8	Enterobacteria_phage	56.2	3.0e-67
QBJ08321.1|967932_968199_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08322.1|968909_969269_+	GtrA family protein	NA	F1C5B1	Cronobacter_phage	56.8	6.4e-32
QBJ08323.1|969268_970189_+	glycosyltransferase	NA	M1FQW5	Enterobacteria_phage	80.3	6.5e-137
>prophage 69
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	994236	996221	5021016		Enterobacteria_phage(100.0%)	2	NA	NA
QBJ08340.1|994236_994842_+	pyrimidine utilization flavin reductase protein F	NA	Q9KX93	Enterobacteria_phage	61.3	2.3e-26
QBJ08341.1|994874_996221_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	74.8	6.5e-178
>prophage 70
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	999949	1001569	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ08345.1|999949_1001569_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	1.1e-17
>prophage 71
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1004939	1010235	5021016		Cedratvirus(50.0%)	5	NA	NA
QBJ11795.1|1004939_1006421_+	sugar ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	24.6	2.2e-09
QBJ11794.1|1006432_1007428_+	ABC transporter permease	NA	NA	NA	NA	NA
QBJ11796.1|1008061_1008598_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBJ08349.1|1008625_1009195_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBJ08350.1|1009374_1010235_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	47.7	4.7e-49
>prophage 72
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1018429	1019374	5021016		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
QBJ08360.1|1018429_1019374_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	25.0	1.9e-06
>prophage 73
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1043757	1044594	5021016		Brazilian_cedratvirus(100.0%)	1	NA	NA
QBJ08385.1|1043757_1044594_-	phosphonate ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.2	2.2e-14
>prophage 74
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1053759	1055172	5021016		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
QBJ08394.1|1053759_1055172_-	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.5	2.2e-51
>prophage 75
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1060924	1061833	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ08402.1|1060924_1061833_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	28.0	1.6e-23
>prophage 76
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1066060	1066771	5021016		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
QBJ08406.1|1066060_1066771_+	ATP-binding cassette domain-containing protein	NA	R4TX06	Phaeocystis_globosa_virus	27.8	2.6e-08
>prophage 77
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1070687	1071965	5021016		Klosneuvirus(100.0%)	1	NA	NA
QBJ08411.1|1070687_1071965_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.7	1.6e-21
>prophage 78
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1079976	1085540	5021016		uncultured_Caudovirales_phage(33.33%)	6	NA	NA
QBJ08420.1|1079976_1081488_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.4	3.3e-05
QBJ08421.1|1081742_1082741_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
QBJ08422.1|1082911_1083733_+	pyridoxal phosphatase	NA	NA	NA	NA	NA
QBJ08423.1|1083788_1084058_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	69.8	4.3e-17
QBJ08424.1|1084202_1084466_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBJ08425.1|1084478_1085540_-	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	1.5e-20
>prophage 79
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1088610	1093167	5021016		Cedratvirus(50.0%)	4	NA	NA
QBJ08430.1|1088610_1090080_+	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	27.4	3.3e-10
QBJ08431.1|1090033_1090864_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08432.1|1091002_1091950_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ08433.1|1092150_1093167_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	46.8	1.3e-85
>prophage 80
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1100645	1104099	5021016		Edwardsiella_phage(33.33%)	4	NA	NA
QBJ08442.1|1100645_1101698_-	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	48.0	4.0e-82
QBJ08443.1|1101901_1102231_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08444.1|1102357_1103311_+	CDF family zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	28.1	6.9e-25
QBJ11798.1|1103376_1104099_-	nicotinamide riboside transporter PnuC	NA	A0A2I7SAC7	Vibrio_phage	28.7	1.2e-21
>prophage 81
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1116355	1117228	5021016		Tupanvirus(100.0%)	1	NA	NA
QBJ08457.1|1116355_1117228_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	34.7	8.8e-19
>prophage 82
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1131558	1132353	5021016		Kaumoebavirus(100.0%)	1	NA	NA
QBJ08467.1|1131558_1132353_-	endonuclease VIII	NA	A0A1V0CNR6	Kaumoebavirus	35.1	6.6e-13
>prophage 83
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1138787	1140218	5021016		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
QBJ08475.1|1138787_1140218_-	deoxyribodipyrimidine photo-lyase	NA	F2Y1K1	Organic_Lake_phycodnavirus	32.3	5.4e-58
>prophage 84
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1143812	1149206	5021016		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
QBJ08480.1|1143812_1145879_+	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.3	1.6e-26
QBJ08481.1|1145897_1146491_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
QBJ08482.1|1146509_1149206_+	two-component system sensor histidine kinase KdbD	NA	W8CYF6	Bacillus_phage	30.5	1.6e-21
>prophage 85
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1160353	1162024	5021016	tRNA	Escherichia_phage(100.0%)	1	NA	NA
QBJ08493.1|1160353_1162024_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	84.4	2.6e-285
>prophage 86
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1169142	1170807	5021016		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
QBJ08497.1|1169142_1170807_+	asparagine synthase B	NA	H8ZJK1	Ostreococcus_tauri_virus	40.5	7.2e-86
>prophage 87
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1174884	1175961	5021016		Pseudomonas_phage(100.0%)	1	NA	NA
QBJ08501.1|1174884_1175961_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.2	9.5e-47
>prophage 88
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1181886	1186022	5021016	tRNA	Planktothrix_phage(50.0%)	3	NA	NA
QBJ08508.1|1181886_1182612_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-29
QBJ08509.1|1182671_1183172_-	zinc ribbon-containing protein	NA	NA	NA	NA	NA
QBJ08510.1|1183439_1186022_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.7	6.6e-187
>prophage 89
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1192467	1195000	5021016		Synechococcus_phage(50.0%)	2	NA	NA
QBJ08518.1|1192467_1193619_+	endolytic peptidoglycan transglycosylase RlpA	NA	F5B3X9	Synechococcus_phage	45.6	4.7e-12
QBJ08519.1|1193791_1195000_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	52.2	7.0e-107
>prophage 90
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1198001	1198799	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ08524.1|1198001_1198799_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.4e-34
>prophage 91
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1204877	1216103	5021016		uncultured_Caudovirales_phage(20.0%)	12	NA	NA
QBJ08531.1|1204877_1205261_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	49.5	2.4e-21
QBJ08532.1|1205720_1206377_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ08533.1|1206386_1207574_+	Bcr/CflA family efflux MFS transporter	NA	S4TR35	Salmonella_phage	26.8	2.4e-27
QBJ08534.1|1207639_1207849_-	cold shock-like protein CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	4.5e-22
QBJ08535.1|1208026_1208770_-	DUF2076 domain-containing protein	NA	NA	NA	NA	NA
QBJ08536.1|1208966_1210097_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ08537.1|1210288_1212388_-	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	32.8	5.2e-41
QBJ08538.1|1212479_1213493_-	phosphatase	NA	NA	NA	NA	NA
QBJ08539.1|1213804_1214050_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08540.1|1214089_1214611_-	cupin domain-containing protein	NA	NA	NA	NA	NA
QBJ08541.1|1214644_1214998_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08542.1|1215026_1216103_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	27.8	4.3e-07
>prophage 92
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1233016	1233889	5021016		Enterococcus_phage(100.0%)	1	NA	NA
QBJ08553.1|1233016_1233889_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	36.0	3.5e-31
>prophage 93
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1245485	1251784	5021016	tRNA	Streptococcus_phage(33.33%)	6	NA	NA
QBJ08565.1|1245485_1246586_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	38.3	3.8e-67
QBJ08566.1|1246665_1247316_-	esterase	NA	NA	NA	NA	NA
QBJ08567.1|1247424_1249410_-|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	Q56AQ2	Bacillus_thuringiensis_phage	26.6	1.0e-06
QBJ08568.1|1249411_1249864_-	DUF441 domain-containing protein	NA	NA	NA	NA	NA
QBJ08569.1|1249978_1250851_-	neutral zinc metallopeptidase	NA	NA	NA	NA	NA
QBJ08570.1|1251070_1251784_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FGF0	Synechococcus_phage	34.8	2.2e-36
>prophage 94
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1259431	1263374	5021016		Prochlorococcus_phage(66.67%)	4	NA	NA
QBJ08578.1|1259431_1260724_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	38.6	8.4e-66
QBJ08579.1|1260802_1261429_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
QBJ08580.1|1261661_1262699_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.7	1.4e-74
QBJ08581.1|1262735_1263374_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	40.3	2.4e-26
>prophage 95
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1272808	1277431	5021016	tRNA	Bacillus_phage(50.0%)	3	NA	NA
QBJ08588.1|1272808_1275091_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	30.6	1.8e-15
QBJ08589.1|1275098_1275971_-	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA	NA
QBJ08590.1|1276039_1277431_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	26.5	1.2e-46
>prophage 96
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1283956	1284643	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ08597.1|1283956_1284643_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.3	7.2e-08
>prophage 97
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1289312	1291856	5021016		uncultured_virus(100.0%)	1	NA	NA
QBJ08604.1|1289312_1291856_+	copper-exporting P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	35.9	3.1e-104
>prophage 98
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1300308	1308267	5021016		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
QBJ08612.1|1300308_1302180_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.5	1.4e-114
QBJ08613.1|1302341_1302947_-	recombination protein RecR	NA	NA	NA	NA	NA
QBJ08614.1|1302946_1303276_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
QBJ08615.1|1303317_1305267_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	36.6	2.6e-42
QBJ08616.1|1305589_1307653_+	alpha-amylase	NA	NA	NA	NA	NA
QBJ08617.1|1307715_1308267_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.5	1.0e-28
>prophage 99
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1315336	1321687	5021016		Leptospira_phage(50.0%)	6	NA	NA
QBJ08624.1|1315336_1318489_+	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.3	2.1e-54
QBJ08625.1|1318610_1318865_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
QBJ08626.1|1318885_1319026_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
QBJ08627.1|1319149_1320028_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ08628.1|1320071_1320929_-	metal ABC transporter permease	NA	NA	NA	NA	NA
QBJ08629.1|1320925_1321687_-	ABC transporter ATP-binding protein	NA	A0A2H4UU96	Bodo_saltans_virus	23.9	1.9e-09
>prophage 100
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1328037	1328346	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ08636.1|1328037_1328346_+	MGMT family protein	NA	M1PFU9	Streptococcus_phage	41.3	2.1e-07
>prophage 101
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1332329	1335894	5021016		Bacillus_phage(100.0%)	2	NA	NA
QBJ11805.1|1332329_1334159_-	SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.1	1.1e-39
QBJ08641.1|1334121_1335894_-	SmdA family multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	4.9e-48
>prophage 102
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1340658	1341357	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ08646.1|1340658_1341357_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	69.5	1.1e-88
>prophage 103
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1344542	1349684	5021016	protease	Sodalis_phage(25.0%)	4	NA	NA
QBJ08650.1|1344542_1344818_-	DNA-binding protein HU-beta	NA	A3E2K9	Sodalis_phage	59.6	2.5e-20
QBJ08651.1|1345034_1347389_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.9	5.0e-226
QBJ08652.1|1347580_1348855_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	55.9	8.1e-130
QBJ08653.1|1349060_1349684_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	64.1	6.9e-66
>prophage 104
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1370191	1380852	5021016	tRNA	uncultured_Mediterranean_phage(50.0%)	12	NA	NA
QBJ08672.1|1370191_1371166_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	32.8	2.5e-06
QBJ11806.1|1371235_1371730_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
QBJ08673.1|1371792_1372779_-	thiamine-phosphate kinase	NA	NA	NA	NA	NA
QBJ08674.1|1372944_1373358_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
QBJ08675.1|1373378_1373849_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	46.7	4.6e-30
QBJ08676.1|1373972_1375109_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	32.9	1.4e-45
QBJ08677.1|1375118_1375568_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
QBJ08678.1|1375728_1376292_+	DUF3251 domain-containing protein	NA	NA	NA	NA	NA
QBJ08679.1|1376373_1377348_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	39.0	2.7e-48
QBJ08680.1|1377358_1379206_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
QBJ08681.1|1379233_1379566_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.2	2.2e-10
QBJ08682.1|1379727_1380852_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	47.2	1.7e-91
>prophage 105
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1389067	1400785	5021016		Bacillus_phage(40.0%)	10	NA	NA
QBJ08689.1|1389067_1390171_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	47.0	1.9e-95
QBJ08690.1|1390441_1390837_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08691.1|1390829_1391162_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBJ08692.1|1391195_1392515_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	30.2	2.3e-26
QBJ08693.1|1392537_1393227_-	phosphate response regulator transcription factor PhoB	NA	W8CYM9	Bacillus_phage	37.6	4.8e-36
QBJ08694.1|1393454_1394693_+	exonuclease subunit SbcD	NA	NA	NA	NA	NA
QBJ08695.1|1394689_1397938_+	exonuclease subunit SbcC	NA	G3MAB6	Bacillus_virus	26.0	1.3e-11
QBJ08696.1|1398177_1399191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ08697.1|1399202_1399967_+	ABC transporter permease	NA	NA	NA	NA	NA
QBJ11807.1|1400008_1400785_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.7	2.1e-27
>prophage 106
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1405851	1406766	5021016		Salmonella_phage(100.0%)	1	NA	NA
QBJ08702.1|1405851_1406766_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	63.1	7.4e-101
>prophage 107
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1423740	1487237	5021016	holin,capsid,tRNA,head,tail,integrase,portal,terminase	Cronobacter_phage(64.86%)	67	1456366:1456410	1487287:1487331
QBJ08721.1|1423740_1427631_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	59.6	1.0e-130
QBJ08722.1|1427909_1429370_+	membrane-bound lytic murein transglycosylase MltF	NA	G0YQ82	Erwinia_phage	40.8	6.9e-08
QBJ08723.1|1429388_1429946_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	30.4	9.3e-06
QBJ08724.1|1429987_1430626_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QBJ11808.1|1430630_1432004_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QBJ08725.1|1432032_1432938_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QBJ08726.1|1433081_1433930_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ08727.1|1434043_1434298_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	51.2	8.2e-18
QBJ08728.1|1434332_1434713_-	holo-ACP synthase	NA	NA	NA	NA	NA
QBJ08729.1|1434712_1435444_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QBJ08730.1|1435547_1436285_-	DNA repair protein RecO	NA	NA	NA	NA	NA
QBJ08731.1|1436296_1437202_-	GTPase Era	NA	NA	NA	NA	NA
QBJ08732.1|1437198_1437879_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	29.9	1.6e-20
QBJ08733.1|1438090_1439068_-	signal peptidase I	NA	NA	NA	NA	NA
QBJ08734.1|1439096_1440896_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	25.6	4.2e-23
QBJ08735.1|1441320_1442139_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08736.1|1442199_1442676_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
QBJ08737.1|1442724_1443675_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QBJ08738.1|1443674_1444322_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QBJ11809.1|1444352_1444928_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QBJ08739.1|1445106_1446744_+	L-aspartate oxidase	NA	NA	NA	NA	NA
QBJ08740.1|1446807_1447554_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
QBJ08741.1|1447710_1449039_+	ATP-dependent RNA helicase SrmB	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.4	3.0e-42
QBJ08742.1|1449286_1449670_-	autonomous glycyl radical cofactor GrcA	NA	A0A1W5N098	Cronobacter_phage	70.2	5.2e-32
QBJ08743.1|1450009_1450690_+	uracil-DNA glycosylase	NA	A0A076JX67	Equid_alphaherpesvirus	47.9	2.5e-53
QBJ08744.1|1450750_1451338_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QBJ08745.1|1451475_1452354_+	NAD(+) kinase	NA	NA	NA	NA	NA
QBJ08746.1|1452432_1454112_+	DNA repair protein RecN	NA	NA	NA	NA	NA
QBJ08747.1|1454224_1454569_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QBJ08748.1|1454645_1454930_-	RnfH family protein	NA	NA	NA	NA	NA
QBJ08749.1|1454922_1455357_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
QBJ08750.1|1455513_1455996_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.2	9.8e-28
1456366:1456410	attL	TGTAGTAATTCTGGACGGGGGTTCAAATCCCCCCAGCTCCACCAA	NA	NA	NA	NA
QBJ08751.1|1456494_1457367_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08752.1|1458315_1458681_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08753.1|1458817_1460473_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	58.1	4.1e-182
QBJ08754.1|1460476_1461016_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	60.2	1.9e-48
QBJ08755.1|1460990_1461713_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	39.2	4.9e-39
QBJ08756.1|1461702_1462143_-|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	44.1	1.4e-20
QBJ08757.1|1464852_1465440_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	72.8	6.0e-80
QBJ08758.1|1465432_1466617_-	hypothetical protein	NA	F1BUK6	Cronobacter_phage	73.6	1.2e-162
QBJ08759.1|1466609_1466942_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	71.7	9.1e-33
QBJ08760.1|1466941_1469251_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	45.0	2.4e-164
QBJ08761.1|1469438_1469696_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	55.8	1.7e-18
QBJ08762.1|1469692_1469872_-	hypothetical protein	NA	F1BUL1	Cronobacter_phage	61.8	2.1e-12
QBJ08763.1|1469816_1470191_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	54.4	6.2e-22
QBJ08764.1|1470187_1470529_-	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	79.2	1.5e-43
QBJ08765.1|1470525_1470822_-|holin	holin	holin	C7BGD7	Burkholderia_phage	55.3	1.0e-19
QBJ08766.1|1470835_1471288_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	65.1	1.6e-51
QBJ08767.1|1471290_1472418_-	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	69.8	8.7e-144
QBJ08768.1|1473113_1473620_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	49.4	5.3e-40
QBJ08769.1|1473616_1474069_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	61.3	3.4e-46
QBJ08770.1|1474162_1474858_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	60.8	4.5e-74
QBJ08771.1|1474860_1475898_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	73.9	9.5e-137
QBJ08772.1|1476953_1478741_+|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	71.5	3.1e-252
QBJ08773.1|1478737_1479769_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	66.5	6.1e-136
QBJ08774.1|1479765_1480080_+	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	61.8	3.1e-30
QBJ08775.1|1480062_1480269_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08776.1|1480477_1482526_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	62.0	2.6e-218
QBJ08777.1|1482526_1483330_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	F1BUN1	Cronobacter_phage	58.1	9.4e-84
QBJ11810.1|1483326_1483587_-	DUF2732 family protein	NA	NA	NA	NA	NA
QBJ08778.1|1483667_1484099_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08779.1|1484106_1484433_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08780.1|1484435_1484639_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
QBJ08781.1|1484648_1485158_-	hypothetical protein	NA	F1BUN6	Cronobacter_phage	52.8	1.1e-42
QBJ08782.1|1485160_1485442_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ08783.1|1485578_1486142_+	phage repressor protein	NA	F1BUN8	Cronobacter_phage	35.3	2.9e-31
QBJ08784.1|1486145_1487237_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	75.0	1.5e-153
1487287:1487331	attR	TGTAGTAATTCTGGACGGGGGTTCAAATCCCCCCAGCTCCACCAA	NA	NA	NA	NA
>prophage 108
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1490529	1495493	5021016		Spodoptera_frugiperda_nuclear_polyhedrosis_virus(50.0%)	3	NA	NA
QBJ08788.1|1490529_1493385_+	glycoside hydrolase	NA	E9L614	Spodoptera_frugiperda_nuclear_polyhedrosis_virus	26.7	3.2e-33
QBJ08789.1|1493740_1494520_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ08790.1|1494710_1495493_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.1	2.9e-21
>prophage 109
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1508957	1509827	5021016		Lactobacillus_phage(100.0%)	1	NA	NA
QBJ08804.1|1508957_1509827_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	28.5	1.2e-10
>prophage 110
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1515160	1516270	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ08810.1|1515160_1516270_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	2.7e-28
>prophage 111
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1529420	1530953	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ08821.1|1529420_1530953_-	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.4	6.3e-12
>prophage 112
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1534114	1536988	5021016		Prochlorococcus_phage(100.0%)	1	NA	NA
QBJ08824.1|1534114_1536988_-	aminomethyl-transferring glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	52.6	1.4e-270
>prophage 113
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1545912	1547151	5021016		Catovirus(100.0%)	1	NA	NA
QBJ08834.1|1545912_1547151_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	47.4	8.2e-103
>prophage 114
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1555251	1559567	5021016		Herpes_simplex_virus(50.0%)	2	NA	NA
QBJ08843.1|1555251_1558350_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	68.0	0.0e+00
QBJ08844.1|1558484_1559567_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	58.5	1.2e-110
>prophage 115
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1578636	1579788	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ08859.1|1578636_1579788_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.4	1.5e-130
>prophage 116
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1596443	1597265	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ08875.1|1596443_1597265_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	30.2	6.4e-19
>prophage 117
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1631547	1640638	5021016		uncultured_Caudovirales_phage(20.0%)	7	NA	NA
QBJ08906.1|1631547_1633155_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.2	7.6e-16
QBJ08907.1|1633164_1634178_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ08908.1|1634265_1635336_-	GDP-mannose 4,6-dehydratase	NA	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	46.5	2.4e-82
QBJ08909.1|1635474_1636629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
QBJ08910.1|1636714_1638094_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	29.7	4.1e-34
QBJ08911.1|1638108_1639530_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	28.2	9.0e-45
QBJ08912.1|1639648_1640638_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	39.8	8.8e-15
>prophage 118
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1660901	1668054	5021016		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
QBJ08930.1|1660901_1663613_-	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	26.8	3.1e-70
QBJ08931.1|1663903_1664989_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBJ08932.1|1664988_1668054_+	efflux RND transporter permease subunit	NA	S5VL66	Leptospira_phage	21.0	4.6e-22
>prophage 119
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1684424	1687965	5021016		Escherichia_phage(50.0%)	3	NA	NA
QBJ08951.1|1684424_1684967_-	hypothetical protein	NA	A0A0U2I1S0	Escherichia_phage	57.2	8.7e-57
QBJ08952.1|1684989_1685436_-	transcriptional regulator	NA	NA	NA	NA	NA
QBJ08953.1|1685883_1687965_+	chitinase	NA	Q4KT15	Chrysodeixis_chalcites_nucleopolyhedrovirus	27.8	2.9e-36
>prophage 120
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1697526	1698180	5021016		Apricot_vein_clearing_associated_virus(100.0%)	1	NA	NA
QBJ08963.1|1697526_1698180_-	DNA oxidative demethylase AlkB	NA	A0A0H3Y8P5	Apricot_vein_clearing_associated_virus	33.7	7.1e-05
>prophage 121
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1704903	1706355	5021016	protease	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
QBJ08967.1|1704903_1706355_-|protease	serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.7	3.9e-27
>prophage 122
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1710455	1710800	5021016		Lake_Baikal_phage(100.0%)	1	NA	NA
QBJ11817.1|1710455_1710800_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.5	7.7e-27
>prophage 123
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1716826	1717639	5021016		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
QBJ08976.1|1716826_1717639_-	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	1.3e-11
>prophage 124
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1723083	1725528	5021016		Bodo_saltans_virus(100.0%)	1	NA	NA
QBJ11818.1|1723083_1725528_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	31.1	1.9e-42
>prophage 125
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1728706	1730413	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ08983.1|1728706_1730413_+	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	37.4	1.0e-26
>prophage 126
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1736187	1737111	5021016		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
QBJ08991.1|1736187_1737111_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.3	2.0e-21
>prophage 127
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1743840	1746479	5021016		Erwinia_phage(50.0%)	3	NA	NA
QBJ08995.1|1743840_1744062_+	DNA-binding transcriptional regulator	NA	F1BUT0	Erwinia_phage	66.7	3.4e-20
QBJ08996.1|1745006_1745339_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ08997.1|1745942_1746479_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	33.1	1.3e-17
>prophage 128
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1751012	1752617	5021016		Mamastrovirus(100.0%)	1	NA	NA
QBJ09003.1|1751012_1752617_-	multicopper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	54.8	3.3e-19
>prophage 129
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1769564	1771715	5021016		Bacillus_virus(50.0%)	2	NA	NA
QBJ09018.1|1769564_1770656_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	7.6e-28
QBJ09019.1|1770884_1771715_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	42.2	6.0e-09
>prophage 130
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1775535	1776963	5021016		Erysipelothrix_phage(100.0%)	1	NA	NA
QBJ09022.1|1775535_1776963_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.3	5.7e-39
>prophage 131
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1788092	1788665	5021016		Thiobacimonas_phage(100.0%)	1	NA	NA
QBJ09031.1|1788092_1788665_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1B0T6G1	Thiobacimonas_phage	33.8	6.6e-15
>prophage 132
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1793157	1796496	5021016		Chrysochromulina_ericina_virus(50.0%)	5	NA	NA
QBJ09036.1|1793157_1794201_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	56.7	5.3e-103
QBJ09037.1|1794443_1795040_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
QBJ09038.1|1795065_1795818_+	cell division protein ZapD	NA	NA	NA	NA	NA
QBJ09039.1|1795827_1796025_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA	NA
QBJ09040.1|1796094_1796496_-	8-oxo-dGTP diphosphatase MutT	NA	A0A067ZIY1	Escherichia_phage	35.9	1.5e-05
>prophage 133
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1820680	1828189	5021016		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
QBJ09061.1|1820680_1822399_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	4.0e-55
QBJ09062.1|1822826_1824623_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.6	5.8e-41
QBJ09063.1|1824912_1825860_-	transcriptional regulator LeuO	NA	NA	NA	NA	NA
QBJ11822.1|1826422_1826506_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09064.1|1826599_1828189_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	24.4	1.2e-08
>prophage 134
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1838540	1850512	5021016	tRNA	Bacillus_virus(25.0%)	6	NA	NA
QBJ09074.1|1838540_1839251_+	thiamine ABC transporter ATP-binding protein ThiQ	NA	G3M9Y6	Bacillus_virus	33.2	8.2e-23
QBJ09075.1|1839240_1840008_-	DedA family protein	NA	NA	NA	NA	NA
QBJ09076.1|1840309_1842652_+	DNA polymerase II	NA	A0A0N7KVW0	Yellowstone_lake_phycodnavirus	24.5	3.7e-27
QBJ09077.1|1842863_1845761_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	37.4	2.0e-22
QBJ09078.1|1845827_1846529_+|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
QBJ09079.1|1846735_1850512_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	33.6	9.0e-84
>prophage 135
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1857558	1858981	5021016		Microcystis_phage(50.0%)	2	NA	NA
QBJ09086.1|1857558_1858413_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	A0A075BTY6	Microcystis_phage	40.9	5.3e-08
QBJ09087.1|1858495_1858981_-	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	45.1	3.0e-32
>prophage 136
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1863815	1866407	5021016		Ectropis_obliqua_nucleopolyhedrovirus(100.0%)	1	NA	NA
QBJ09093.1|1863815_1866407_-	glycoside hydrolase	NA	A0EYV3	Ectropis_obliqua_nucleopolyhedrovirus	60.3	3.9e-195
>prophage 137
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1869983	1871135	5021016		Halovirus(100.0%)	1	NA	NA
QBJ09095.1|1869983_1871135_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.6	4.4e-50
>prophage 138
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1877285	1887354	5021016	tRNA	Bodo_saltans_virus(25.0%)	7	NA	NA
QBJ09102.1|1877285_1880102_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	25.9	6.5e-63
QBJ09103.1|1880163_1881102_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
QBJ09104.1|1881541_1881805_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
QBJ09105.1|1881887_1882775_-	transcriptional activator NhaR	NA	NA	NA	NA	NA
QBJ09106.1|1882814_1883990_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	49.9	1.2e-87
QBJ09107.1|1884219_1885353_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	32.0	6.7e-27
QBJ09108.1|1885452_1887354_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.7	2.5e-143
>prophage 139
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1890513	1891467	5021016		Synechococcus_phage(100.0%)	1	NA	NA
QBJ09112.1|1890513_1891467_-	transaldolase	NA	A0A0E3G6C9	Synechococcus_phage	34.4	7.4e-11
>prophage 140
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1901362	1912708	5021016		Vibrio_phage(25.0%)	9	NA	NA
QBJ09120.1|1901362_1901845_-	protein CreA	NA	A0A2I7SAK3	Vibrio_phage	32.4	1.8e-13
QBJ09121.1|1902053_1902917_+	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA	NA
QBJ09122.1|1902929_1903577_-	phosphoglycerate mutase GpmB	NA	NA	NA	NA	NA
QBJ09123.1|1903628_1904162_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA	NA
QBJ09124.1|1904185_1904521_-	trp operon repressor	NA	NA	NA	NA	NA
QBJ09125.1|1904577_1906506_-	murein transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	38.1	1.4e-11
QBJ09126.1|1907094_1909833_+	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	28.3	3.6e-74
QBJ09127.1|1910156_1910837_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
QBJ09128.1|1911040_1912708_+	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	25.8	2.7e-40
>prophage 141
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1917612	1918872	5021016		Enterococcus_phage(100.0%)	1	NA	NA
QBJ09133.1|1917612_1918872_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	44.1	2.9e-87
>prophage 142
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1925972	1927301	5021016		Geobacillus_virus(100.0%)	1	NA	NA
QBJ09140.1|1925972_1927301_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	40.4	1.3e-82
>prophage 143
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1930947	1937002	5021016		Salmonella_phage(33.33%)	4	NA	NA
QBJ09144.1|1930947_1931109_-	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	66.7	7.3e-12
QBJ09145.1|1931427_1932021_-	molecular chaperone OsmY	NA	NA	NA	NA	NA
QBJ09146.1|1932444_1935000_-	lysozyme	NA	A7IVH1	Paramecium_bursaria_Chlorella_virus	35.1	1.8e-40
QBJ09147.1|1935412_1937002_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	25.1	1.2e-29
>prophage 144
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1954587	1956762	5021016		Pseudomonas_phage(100.0%)	1	NA	NA
QBJ09164.1|1954587_1956762_-	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	70.3	1.2e-101
>prophage 145
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1968817	1972316	5021016		Streptococcus_phage(66.67%)	3	NA	NA
QBJ09175.1|1968817_1969285_-	DNA mismatch endonuclease Vsr	NA	E5E3X5	Burkholderia_phage	44.6	3.5e-30
QBJ11825.1|1969292_1970582_-	DNA (cytosine-5-)-methyltransferase	NA	Q6DMX0	Streptococcus_phage	53.3	1.3e-111
QBJ11826.1|1970738_1972316_+	type II restriction endonuclease subunit R	NA	M1NSM1	Streptococcus_phage	34.3	3.0e-49
>prophage 146
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1980031	1981776	5021016	transposase	Leptospira_phage(50.0%)	3	NA	NA
QBJ09184.1|1980031_1981152_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.0	1.5e-50
QBJ09185.1|1981164_1981593_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09186.1|1981599_1981776_+	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	45.6	8.2e-09
>prophage 147
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1986018	1987278	5021016		Stenotrophomonas_phage(100.0%)	1	NA	NA
QBJ09189.1|1986018_1987278_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	42.5	1.1e-75
>prophage 148
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	1991415	1996376	5021016	tRNA	Mycoplasma_phage(50.0%)	3	NA	NA
QBJ09194.1|1991415_1992927_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.7	1.7e-46
QBJ09195.1|1993042_1993528_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
QBJ09196.1|1993520_1996376_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.5	2.1e-141
>prophage 149
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2021363	2022299	5021016		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
QBJ11829.1|2021363_2022299_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.2	2.7e-50
>prophage 150
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2027471	2030747	5021016		Enterobacteria_phage(50.0%)	3	NA	NA
QBJ09222.1|2027471_2028503_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.3	1.8e-18
QBJ09223.1|2028548_2029559_-	OmpG family monomeric porin	NA	NA	NA	NA	NA
QBJ09224.1|2029658_2030747_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	W8CYL7	Bacillus_phage	27.4	7.2e-10
>prophage 151
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2057295	2065829	5021016	transposase	uncultured_Caudovirales_phage(50.0%)	8	NA	NA
QBJ09250.1|2057295_2058165_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	44.0	2.1e-49
QBJ09251.1|2058226_2060263_+	penicillin-binding protein activator	NA	NA	NA	NA	NA
QBJ09252.1|2060328_2060697_+	YraN family protein	NA	NA	NA	NA	NA
QBJ09253.1|2060727_2061318_+	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	32.5	3.7e-13
QBJ09254.1|2061327_2061903_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA	NA
QBJ09255.1|2061961_2063284_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QBJ09256.1|2063410_2064982_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.7	1.7e-12
QBJ09257.1|2065298_2065829_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	62.7	2.1e-55
>prophage 152
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2083615	2085565	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ09276.1|2083615_2085565_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.8	7.3e-21
>prophage 153
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2088577	2093069	5021016		Lactococcus_phage(50.0%)	3	NA	NA
QBJ09280.1|2088577_2091076_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.4	1.3e-67
QBJ09281.1|2091117_2091543_-	HTH-type transcriptional repressor NsrR	NA	NA	NA	NA	NA
QBJ09282.1|2091770_2093069_-	adenylosuccinate synthase	NA	A0A2R8FF47	Brazilian_cedratvirus	35.8	4.0e-68
>prophage 154
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2098604	2102322	5021016		Wolbachia_phage(50.0%)	2	NA	NA
QBJ09289.1|2098604_2100524_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.1	2.2e-62
QBJ09290.1|2100555_2102322_-	N-acetylmuramoyl-L-alanine amidase AmiB	NA	A0A067ZJB6	Vibrio_phage	31.0	4.1e-15
>prophage 155
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2106318	2106873	5021016		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
QBJ09294.1|2106318_2106873_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.0	9.2e-30
>prophage 156
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2114131	2120989	5021016		Enterobacteria_phage(33.33%)	7	NA	NA
QBJ09299.1|2114131_2115496_-	purine permease	NA	Q9KX94	Enterobacteria_phage	25.8	4.0e-18
QBJ09300.1|2115761_2116739_-	elongation factor P--(R)-beta-lysine ligase	NA	NA	NA	NA	NA
QBJ09301.1|2117022_2118822_+	fumarate reductase (quinol) flavoprotein subunit	NA	A0A2P0ZL82	Lactobacillus_phage	27.9	2.2e-16
QBJ09302.1|2118814_2119549_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
QBJ09303.1|2119560_2119971_+	fumarate reductase subunit FrdC	NA	NA	NA	NA	NA
QBJ09304.1|2119980_2120340_+	fumarate reductase subunit FrdD	NA	NA	NA	NA	NA
QBJ09305.1|2120464_2120989_+	outer membrane lipoprotein Blc	NA	A0A1W6JNX6	Morganella_phage	59.6	1.2e-50
>prophage 157
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2124022	2126043	5021016		Vibrio_phage(50.0%)	2	NA	NA
QBJ09311.1|2124022_2125669_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	66.5	1.6e-183
QBJ09312.1|2125722_2126043_-	co-chaperone GroES	NA	A0A221S322	uncultured_virus	35.8	1.8e-09
>prophage 158
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2138827	2139424	5021016		Escherichia_phage(100.0%)	1	NA	NA
QBJ09322.1|2138827_2139424_-	hypothetical protein	NA	A0A2L1IV36	Escherichia_phage	54.1	8.3e-53
>prophage 159
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2166936	2167542	5021016		Escherichia_phage(100.0%)	1	NA	NA
QBJ09352.1|2166936_2167542_-	DNA recombinase	NA	A0A2L1IV36	Escherichia_phage	50.3	4.2e-52
>prophage 160
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2172804	2173806	5021016		Caulobacter_phage(100.0%)	1	NA	NA
QBJ09358.1|2172804_2173806_-	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	36.6	3.7e-45
>prophage 161
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2181536	2190537	5021016		Caulobacter_phage(33.33%)	10	NA	NA
QBJ09365.1|2181536_2182112_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	39.6	4.8e-29
QBJ09366.1|2182199_2182778_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	37.5	3.3e-30
QBJ09367.1|2182830_2183874_-	TerC/Alx family metal homeostasis membrane protein	NA	K7QKE8	Escherichia_phage	45.9	3.0e-74
QBJ09368.1|2183902_2184358_-	Tellurium resistance protein TerB	NA	NA	NA	NA	NA
QBJ09369.1|2184381_2185560_-	tellurium resistance protein TerA	NA	NA	NA	NA	NA
QBJ09370.1|2185559_2186147_-	tellurium resistance protein TerZ	NA	A0A2I7QY07	Vibrio_phage	35.7	1.1e-20
QBJ09371.1|2186468_2187551_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
QBJ09372.1|2187553_2188690_+	adenine/guanine phosphoribosyltransferase	NA	A0A172Q0Y1	Acinetobacter_phage	28.1	2.2e-33
QBJ09373.1|2188682_2189456_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09374.1|2189457_2190537_+	hypothetical protein	NA	A0A172Q0S8	Acinetobacter_phage	36.3	1.1e-42
>prophage 162
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2212674	2213955	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ09397.1|2212674_2213955_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	55.5	4.8e-130
>prophage 163
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2226830	2230461	5021016		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
QBJ09412.1|2226830_2227871_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	33.2	5.6e-28
QBJ09413.1|2227921_2229304_-	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA	NA	NA	NA	NA
QBJ09414.1|2229307_2229988_-	prepilin peptidase	NA	NA	NA	NA	NA
QBJ09415.1|2229984_2230461_-	pilus assembly protein	NA	A0A0A8J856	Ralstonia_phage	32.6	6.7e-05
>prophage 164
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2239183	2244201	5021016		Ralstonia_phage(33.33%)	5	NA	NA
QBJ09422.1|2239183_2239615_-	DUF29 domain-containing protein	NA	A0JC30	Ralstonia_phage	45.5	1.6e-29
QBJ09423.1|2239714_2240350_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ09424.1|2240437_2240986_-	single-stranded DNA-binding protein	NA	A0A1B0VAF5	Salmonella_phage	63.2	7.7e-53
QBJ09425.1|2241061_2241562_-	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
QBJ09426.1|2242188_2244201_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.9	3.7e-36
>prophage 165
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2248217	2254110	5021016		Escherichia_phage(33.33%)	5	NA	NA
QBJ09432.1|2248217_2248469_-	TraR/DksA family transcriptional regulator	NA	A0A0A7HBT7	Escherichia_phage	38.7	3.2e-06
QBJ09433.1|2248458_2250195_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ09434.1|2250191_2251562_-	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	52.1	1.1e-119
QBJ09435.1|2251554_2252436_-	ParA family protein	NA	NA	NA	NA	NA
QBJ09436.1|2252949_2254110_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	29.9	1.8e-27
>prophage 166
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2258239	2258512	5021016		Klebsiella_phage(100.0%)	1	NA	NA
QBJ09440.1|2258239_2258512_-	XRE family transcriptional regulator	NA	Q6UAT4	Klebsiella_phage	62.0	1.7e-08
>prophage 167
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2264008	2265970	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ09445.1|2264008_2265970_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.0	8.5e-86
>prophage 168
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2278368	2279842	5021016	tRNA	Synechococcus_phage(50.0%)	2	NA	NA
QBJ09454.1|2278368_2278881_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.7	1.8e-19
QBJ09455.1|2278906_2279842_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.3	1.2e-08
>prophage 169
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2301394	2303374	5021016		Vibrio_phage(100.0%)	1	NA	NA
QBJ09491.1|2301394_2303374_+	type II secretion system protein GspD	NA	R9TEZ5	Vibrio_phage	32.6	2.5e-29
>prophage 170
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2312573	2318201	5021016		Bodo_saltans_virus(33.33%)	8	NA	NA
QBJ09504.1|2312573_2313758_-	elongation factor Tu	NA	A0A2H4UVR3	Bodo_saltans_virus	26.1	4.4e-13
QBJ09505.1|2313722_2313908_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09506.1|2313829_2315944_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.1	6.2e-58
QBJ09507.1|2316040_2316511_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
QBJ09508.1|2316607_2316982_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
QBJ09509.1|2317125_2317413_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
QBJ09510.1|2317426_2317786_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
QBJ09511.1|2317808_2318201_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	40.4	4.5e-15
>prophage 171
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2324195	2326112	5021016		Tupanvirus(100.0%)	1	NA	NA
QBJ09517.1|2324195_2326112_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.8e-72
>prophage 172
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2336261	2337407	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ09528.1|2336261_2337407_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	38.3	2.6e-42
>prophage 173
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2343516	2345298	5021016		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
QBJ09534.1|2343516_2345298_-	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	28.0	2.1e-38
>prophage 174
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2350416	2359721	5021016		environmental_Halophage(16.67%)	8	NA	NA
QBJ09541.1|2350416_2352492_+	hypothetical protein	NA	H9YQA8	environmental_Halophage	73.9	1.3e-55
QBJ09542.1|2353187_2354405_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	2.5e-27
QBJ09543.1|2354528_2355104_-	aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	61.5	4.0e-68
QBJ09544.1|2355180_2355783_-	putative adenosine monophosphate-protein transferase Fic	NA	S4TP71	Salmonella_phage	26.9	1.2e-09
QBJ09545.1|2355772_2355943_-	DUF2559 family protein	NA	NA	NA	NA	NA
QBJ09546.1|2356040_2357246_-	DUF4432 family protein	NA	NA	NA	NA	NA
QBJ09547.1|2357489_2359013_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	43.8	1.6e-79
QBJ09548.1|2359154_2359721_-	peptidylprolyl isomerase A	NA	A0A1V0S9I2	Catovirus	30.9	7.8e-08
>prophage 175
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2368275	2369091	5021016		Vibrio_phage(100.0%)	1	NA	NA
QBJ09556.1|2368275_2369091_-	adenine-specific DNA-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	49.1	3.4e-65
>prophage 176
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2372360	2373623	5021016		Enterobacteria_phage(100.0%)	1	NA	NA
QBJ09560.1|2372360_2373623_-	DNA uptake porin HofQ	NA	D0U174	Enterobacteria_phage	22.8	1.2e-13
>prophage 177
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2384184	2388889	5021016		Bacillus_phage(66.67%)	5	NA	NA
QBJ09569.1|2384184_2385807_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	52.3	8.4e-140
QBJ09570.1|2385910_2386123_+	plasmid stabilization protein	NA	NA	NA	NA	NA
QBJ09571.1|2386119_2386599_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
QBJ09572.1|2386811_2388173_-	two-component system sensor histidine kinase EnvZ	NA	W8CYF6	Bacillus_phage	21.8	2.1e-11
QBJ09573.1|2388169_2388889_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	34.7	2.7e-29
>prophage 178
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2412606	2413569	5021016		Salmonella_phage(100.0%)	1	NA	NA
QBJ09590.1|2412606_2413569_-	AEC family transporter	NA	A0A0U2C0Y4	Salmonella_phage	85.2	7.7e-48
>prophage 179
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2423399	2425814	5021016		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
QBJ09601.1|2423399_2425814_-	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	39.1	1.1e-13
>prophage 180
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2440119	2442567	5021016		Dickeya_phage(100.0%)	1	NA	NA
QBJ09616.1|2440119_2442567_-	glycogen phosphorylase	NA	A0A140XAG6	Dickeya_phage	84.5	3.2e-34
>prophage 181
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2456982	2458365	5021016		Pandoravirus(100.0%)	1	NA	NA
QBJ09627.1|2456982_2458365_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	26.9	2.9e-40
>prophage 182
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2473885	2475541	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ09639.1|2473885_2475541_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.6	1.7e-10
>prophage 183
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2481114	2483175	5021016		Indivirus(100.0%)	1	NA	NA
QBJ09646.1|2481114_2483175_-	oligopeptidase A	NA	A0A1V0SD92	Indivirus	21.1	7.9e-42
>prophage 184
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2491713	2492535	5021016		Mycobacterium_phage(100.0%)	1	NA	NA
QBJ09655.1|2491713_2492535_+	alpha/beta hydrolase	NA	A0A076YKN0	Mycobacterium_phage	29.5	2.0e-17
>prophage 185
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2504878	2506726	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ09669.1|2504878_2506726_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	42.1	1.1e-31
>prophage 186
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2512395	2514549	5021016		Klosneuvirus(100.0%)	1	NA	NA
QBJ09675.1|2512395_2514549_-	peptidyl-dipeptidase Dcp	NA	A0A1V0SIU1	Klosneuvirus	20.9	1.5e-19
>prophage 187
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2522123	2525180	5021016		Herpes_simplex_virus(100.0%)	1	NA	NA
QBJ09680.1|2522123_2525180_+	beta-galactosidase subunit alpha	NA	L0N6M2	Herpes_simplex_virus	33.9	1.9e-156
>prophage 188
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2563796	2565834	5021016		Bacillus_virus(50.0%)	2	NA	NA
QBJ09709.1|2563796_2564819_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.4	4.7e-19
QBJ09710.1|2564808_2565834_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.3	1.8e-15
>prophage 189
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2576941	2578590	5021016		Planktothrix_phage(100.0%)	2	NA	NA
QBJ09719.1|2576941_2577808_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.8	2.7e-12
QBJ09720.1|2577807_2578590_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	1.7e-21
>prophage 190
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2597312	2598814	5021016		Brazilian_cedratvirus(50.0%)	2	NA	NA
QBJ11855.1|2597312_2598104_+	urea ABC transporter ATP-binding protein UrtD	NA	A0A2R8FG22	Brazilian_cedratvirus	27.6	7.3e-12
QBJ09736.1|2598115_2598814_+	urea ABC transporter ATP-binding subunit UrtE	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	2.9e-12
>prophage 191
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2611468	2612464	5021016		Escherichia_coli_O157_typing_phage(100.0%)	1	NA	NA
QBJ09756.1|2611468_2612464_-	acyltransferase	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	25.2	1.5e-09
>prophage 192
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2623150	2625995	5021016		Bacillus_thuringiensis_phage(50.0%)	2	NA	NA
QBJ09765.1|2623150_2623777_+	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	61.7	4.1e-66
QBJ09766.1|2624048_2625995_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.6	2.4e-16
>prophage 193
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2634118	2635663	5021016		Vibrio_phage(100.0%)	1	NA	NA
QBJ09774.1|2634118_2635663_-	deoxycytidylate deaminase	NA	V9LZ62	Vibrio_phage	31.3	1.2e-05
>prophage 194
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2641576	2641861	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ09780.1|2641576_2641861_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	57.4	1.1e-18
>prophage 195
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2644943	2645387	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ09784.1|2644943_2645387_+	N-acetyltransferase	NA	A0A1X9I6I8	Streptococcus_phage	31.9	1.2e-11
>prophage 196
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2654391	2655369	5021016		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
QBJ09792.1|2654391_2655369_+	glyoxylate/hydroxypyruvate reductase GhrB	NA	M1I539	Acanthocystis_turfacea_Chlorella_virus	28.3	4.0e-20
>prophage 197
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2660005	2660416	5021016		Synechococcus_phage(100.0%)	1	NA	NA
QBJ09797.1|2660005_2660416_-	heat shock chaperone IbpA	NA	A0A1D8KN82	Synechococcus_phage	36.7	1.4e-19
>prophage 198
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2663462	2671035	5021016		Bacillus_virus(33.33%)	8	NA	NA
QBJ09801.1|2663462_2665877_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	33.9	9.7e-116
QBJ09802.1|2665896_2666985_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
QBJ09803.1|2667112_2668213_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	35.8	4.3e-55
QBJ09804.1|2668217_2669609_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
QBJ09805.1|2669674_2669962_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09806.1|2670295_2670436_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
QBJ09807.1|2670454_2670814_+	ribonuclease P protein component	NA	NA	NA	NA	NA
QBJ09808.1|2670777_2671035_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	54.8	2.7e-16
>prophage 199
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2675883	2680901	5021016		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
QBJ09813.1|2675883_2677779_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	46.7	2.8e-09
QBJ09814.1|2678102_2678828_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09815.1|2678919_2679489_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
QBJ09816.1|2679563_2680901_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	38.2	9.6e-65
>prophage 200
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2684169	2692616	5021016		Bacillus_phage(25.0%)	7	NA	NA
QBJ09821.1|2684169_2684937_-	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	31.3	2.9e-13
QBJ09822.1|2685029_2685917_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
QBJ09823.1|2685918_2686875_-	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
QBJ09824.1|2686969_2688010_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	35.1	2.4e-47
QBJ09825.1|2688226_2689099_-	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA	NA
QBJ09826.1|2689283_2691113_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	43.5	3.9e-133
QBJ09827.1|2691245_2692616_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	31.9	2.7e-30
>prophage 201
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2705972	2713657	5021016		Sulfolobus_monocaudavirus(25.0%)	6	NA	NA
QBJ09842.1|2705972_2707481_-	ATPase RavA	NA	A0A0N9PBE1	Sulfolobus_monocaudavirus	33.3	2.4e-19
QBJ09843.1|2707748_2709617_+	low affinity potassium transporter Kup	NA	A7J6G4	Paramecium_bursaria_Chlorella_virus	31.3	4.2e-66
QBJ09844.1|2709832_2710252_+	D-ribose pyranase	NA	NA	NA	NA	NA
QBJ09845.1|2710259_2711765_+	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	25.5	3.5e-15
QBJ09846.1|2711771_2712743_+	ribose ABC transporter permease	NA	NA	NA	NA	NA
QBJ09847.1|2712766_2713657_+	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	25.2	5.7e-05
>prophage 202
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2725723	2728528	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ09856.1|2725723_2728528_+	DNA polymerase I	NA	J9PVA4	Bacillus_phage	30.8	1.3e-39
>prophage 203
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2733705	2738712	5021016		Ectocarpus_siliculosus_virus(50.0%)	3	NA	NA
QBJ09862.1|2733705_2734755_-	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.2	1.4e-07
QBJ09863.1|2735007_2736417_-	glutamate--ammonia ligase	NA	NA	NA	NA	NA
QBJ09864.1|2736888_2738712_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	43.1	3.0e-21
>prophage 204
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2743682	2745074	5021016		environmental_Halophage(100.0%)	1	NA	NA
QBJ09870.1|2743682_2745074_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	87.0	1.5e-60
>prophage 205
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2750917	2755975	5021016		Bordetella_phage(33.33%)	4	NA	NA
QBJ09875.1|2750917_2753026_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	34.5	2.1e-10
QBJ09876.1|2753045_2753321_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
QBJ09877.1|2753375_2753999_-	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	35.9	3.3e-20
QBJ09878.1|2754277_2755975_+	NAD-dependent DNA ligase LigB	NA	G3M9X7	Bacillus_virus	20.0	1.7e-21
>prophage 206
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2759385	2769854	5021016	integrase	Morganella_phage(40.0%)	11	2759076:2759094	2770036:2770054
2759076:2759094	attL	TTTACTCGATGTTCTGAAT	NA	NA	NA	NA
QBJ09883.1|2759385_2760885_-	dCMP deaminase family protein	NA	E3T5C5	Cafeteria_roenbergensis_virus	28.5	3.8e-09
QBJ09884.1|2761304_2762054_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ09885.1|2762229_2762445_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ09886.1|2762780_2765456_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	33.6	5.2e-110
QBJ09887.1|2765546_2766533_-|integrase	site-specific integrase	integrase	A0A0F7LBR0	Escherichia_phage	68.3	2.7e-133
QBJ09888.1|2766571_2766826_-	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	54.0	3.6e-13
QBJ09889.1|2766818_2766998_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
QBJ09890.1|2767133_2767328_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
QBJ09891.1|2767369_2767594_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
QBJ09892.1|2767917_2768625_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ09893.1|2768633_2769854_-|integrase	site-specific integrase	integrase	A0A1W6JPG6	Morganella_phage	66.3	5.2e-158
2770036:2770054	attR	TTTACTCGATGTTCTGAAT	NA	NA	NA	NA
>prophage 207
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2776173	2780815	5021016		Xanthomonas_phage(25.0%)	7	NA	NA
QBJ11856.1|2776173_2776629_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	59.5	1.2e-48
QBJ11857.1|2776609_2777824_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.8	7.2e-43
QBJ09900.1|2778011_2778692_+	JAB domain-containing protein	NA	NA	NA	NA	NA
QBJ09901.1|2778958_2779195_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
QBJ09902.1|2779206_2779374_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
QBJ09903.1|2779514_2780324_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	29.3	3.9e-21
QBJ09904.1|2780332_2780815_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	43.9	2.2e-27
>prophage 208
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2791884	2795288	5021016		Cyanophage(33.33%)	3	NA	NA
QBJ09915.1|2791884_2792817_-	ADP-glyceromanno-heptose 6-epimerase	NA	M4PRR6	Cyanophage	35.8	1.8e-33
QBJ09916.1|2793059_2794256_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	27.3	5.1e-33
QBJ09917.1|2794265_2795288_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	86.3	7.2e-20
>prophage 209
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2798624	2802648	5021016		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
QBJ09921.1|2798624_2799917_-	murein hydrolase activator EnvC	NA	A0A2H4JGI7	uncultured_Caudovirales_phage	41.4	8.2e-05
QBJ09922.1|2800062_2801607_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
QBJ09923.1|2801911_2802343_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
QBJ09924.1|2802396_2802648_+	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	51.3	2.2e-15
>prophage 210
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2805674	2807743	5021016		Bacillus_phage(50.0%)	2	NA	NA
QBJ09929.1|2805674_2807045_-	envelope stress sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.8	8.1e-19
QBJ09930.1|2807041_2807743_-	envelope stress response regulator transcription factor CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	31.1	2.8e-07
>prophage 211
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2814151	2815345	5021016		Salmonella_phage(100.0%)	1	NA	NA
QBJ09938.1|2814151_2815345_+	multidrug transporter EmrD	NA	S4TR35	Salmonella_phage	23.9	7.1e-11
>prophage 212
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2821481	2822816	5021016		Erwinia_phage(100.0%)	1	NA	NA
QBJ09945.1|2821481_2822816_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	28.4	1.1e-44
>prophage 213
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2841649	2842411	5021016		Synechococcus_phage(100.0%)	1	NA	NA
QBJ09961.1|2841649_2842411_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	58.9	6.7e-47
>prophage 214
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2850787	2852665	5021016		Acinetobacter_phage(100.0%)	1	NA	NA
QBJ09969.1|2850787_2852665_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	28.3	1.9e-10
>prophage 215
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2859569	2863612	5021016	transposase	Leptospira_phage(50.0%)	3	NA	NA
QBJ09971.1|2859569_2860690_-|transposase	IS3-like element ISRaq1 family transposase	transposase	S5WIU1	Leptospira_phage	42.4	5.1e-51
QBJ09972.1|2861063_2862020_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ09973.1|2862103_2863612_+	sugar ABC transporter ATP-binding protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	33.3	5.8e-10
>prophage 216
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2870470	2872117	5021016		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
QBJ09981.1|2870470_2872117_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	32.2	2.6e-64
>prophage 217
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2879996	2885332	5021016		Bacillus_phage(33.33%)	4	NA	NA
QBJ09989.1|2879996_2882021_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	36.8	1.9e-112
QBJ09990.1|2882098_2883589_-	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA	NA	NA	NA	NA
QBJ09991.1|2883595_2884888_-	ATP-dependent RNA helicase RhlB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.3	2.1e-37
QBJ09992.1|2885005_2885332_+	thioredoxin TrxA	NA	A0A1V0SD63	Indivirus	38.5	1.2e-13
>prophage 218
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2889473	2893699	5021016		Catovirus(33.33%)	4	NA	NA
QBJ09996.1|2889473_2890604_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	30.8	6.1e-28
QBJ09997.1|2890600_2891863_+	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HPJ2	Paramecium_bursaria_Chlorella_virus	25.2	6.1e-21
QBJ09998.1|2891829_2892564_+	dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase	NA	NA	NA	NA	NA
QBJ09999.1|2892568_2893699_+	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA	A0A0F7LAY0	uncultured_marine_virus	40.6	2.6e-18
>prophage 219
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2909887	2913774	5021016		uncultured_Mediterranean_phage(50.0%)	3	NA	NA
QBJ10013.1|2909887_2910799_+	tyrosine recombinase XerC	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	29.7	7.8e-18
QBJ10014.1|2910798_2911515_+	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB	NA	NA	NA	NA	NA
QBJ10015.1|2911611_2913774_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.5	1.1e-118
>prophage 220
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2919508	2921341	5021016		Catovirus(100.0%)	1	NA	NA
QBJ10021.1|2919508_2921341_+	ATP-dependent DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	37.6	1.1e-82
>prophage 221
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2928798	2937375	5021016		Moraxella_phage(100.0%)	1	NA	NA
QBJ10028.1|2928798_2937375_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	37.9	2.1e-32
>prophage 222
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2947129	2949603	5021016		Bacillus_phage(50.0%)	2	NA	NA
QBJ10034.1|2947129_2948494_+	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	28.4	1.5e-36
QBJ10035.1|2948526_2949603_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.0	3.3e-23
>prophage 223
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2953588	2963503	5021016		Dickeya_phage(33.33%)	10	NA	NA
QBJ10040.1|2953588_2954260_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	54.9	1.8e-56
QBJ10041.1|2954498_2954759_+	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	83.3	1.1e-09
QBJ10042.1|2954777_2957132_-	zinc/cadmium/mercury/lead-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	37.2	2.2e-117
QBJ10043.1|2957244_2957871_-	lysoplasmalogenase	NA	A0A140XAH6	Dickeya_phage	61.1	7.2e-31
QBJ10044.1|2958080_2958359_-	DUF1145 family protein	NA	NA	NA	NA	NA
QBJ10045.1|2958360_2958972_-	16S rRNA (guanine(966)-N(2))-methyltransferase	NA	NA	NA	NA	NA
QBJ10046.1|2959198_2960680_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
QBJ10047.1|2960685_2961348_+	cell division ATP-binding protein FtsE	NA	A0A2H4PQG7	Staphylococcus_phage	26.6	2.7e-12
QBJ10048.1|2961347_2962328_+	cell division protein FtsX	NA	NA	NA	NA	NA
QBJ10049.1|2962645_2963503_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	39.8	3.0e-43
>prophage 224
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2967848	2970667	5021016		Cedratvirus(33.33%)	3	NA	NA
QBJ10054.1|2967848_2968619_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	26.0	4.9e-13
QBJ10055.1|2968646_2969348_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.0	2.4e-11
QBJ10056.1|2969479_2970667_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	26.1	4.6e-18
>prophage 225
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2975791	2977608	5021016		Planktothrix_phage(50.0%)	2	NA	NA
QBJ10063.1|2975791_2976865_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	33.2	4.7e-22
QBJ10064.1|2976867_2977608_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.0	1.7e-15
>prophage 226
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	2985614	3004575	5021016		Enterobacteria_phage(14.29%)	16	NA	NA
QBJ10073.1|2985614_2987912_-	formate C-acetyltransferase	NA	H6X4X8	Enterobacteria_phage	48.1	1.7e-05
QBJ10074.1|2987928_2988258_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA	NA
QBJ10075.1|2988275_2989355_-	PTS fructose transporter subunit EIIC	NA	NA	NA	NA	NA
QBJ10076.1|2989721_2992226_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	26.9	4.2e-13
QBJ10077.1|2992237_2992900_+	fructose-6-phosphate aldolase	NA	C7BV14	Synechococcus_phage	28.8	1.0e-19
QBJ10078.1|2992993_2993821_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
QBJ11862.1|2994025_2996287_+	catalase HPII	NA	A0A2K9L572	Tupanvirus	49.0	1.6e-141
QBJ10079.1|2996510_2997272_+	uridine phosphorylase	NA	NA	NA	NA	NA
QBJ10080.1|2997437_2997965_+	DedA family protein	NA	NA	NA	NA	NA
QBJ10081.1|2998122_2999667_+	DNA recombination protein RmuC	NA	R9RFD7	Alteromonas_phage	57.6	7.8e-10
QBJ10082.1|2999808_3000564_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
QBJ11863.1|3000577_3001186_+	SCP2 domain-containing protein	NA	NA	NA	NA	NA
QBJ10083.1|3001182_3002814_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	G8DDN0	Micromonas_pusilla_virus	29.5	1.3e-39
QBJ10084.1|3002887_3003154_+	twin-arginine translocase subunit TatE	NA	NA	NA	NA	NA
QBJ10085.1|3003157_3003805_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
QBJ10086.1|3003807_3004575_+	Sec-independent protein translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	33.0	5.4e-28
>prophage 227
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3014314	3014926	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ10095.1|3014314_3014926_+	IMPACT family protein	NA	A0A1X9I5T8	Streptococcus_phage	33.3	5.1e-21
>prophage 228
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3024748	3028600	5021016		uncultured_Mediterranean_phage(50.0%)	3	NA	NA
QBJ10099.1|3024748_3025699_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	9.3e-30
QBJ10100.1|3025916_3026453_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBJ10101.1|3027415_3028600_+	elongation factor Tu	NA	A0A2H4UVR3	Bodo_saltans_virus	26.1	4.4e-13
>prophage 229
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3032696	3041037	5021016		Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
QBJ10108.1|3032696_3036725_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.4	1.1e-23
QBJ10109.1|3036816_3041037_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.3	4.5e-68
>prophage 230
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3049637	3055291	5021016		Klosneuvirus(33.33%)	6	NA	NA
QBJ10119.1|3049637_3050318_+	deoxyribonuclease V	NA	A0A1V0SJW5	Klosneuvirus	30.8	1.1e-19
QBJ10120.1|3050388_3050979_+	DUF416 family protein	NA	NA	NA	NA	NA
QBJ10121.1|3051169_3051442_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	55.6	4.7e-19
QBJ10122.1|3051451_3052147_+	DUF1481 domain-containing protein	NA	NA	NA	NA	NA
QBJ10123.1|3052366_3053656_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBJ10124.1|3053701_3055291_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.4	2.6e-69
>prophage 231
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3068540	3072242	5021016		Dickeya_phage(100.0%)	1	NA	NA
QBJ10131.1|3068540_3072242_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	85.7	3.2e-25
>prophage 232
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3076921	3077914	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ10137.1|3076921_3077914_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.7	1.5e-30
>prophage 233
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3090248	3090857	5021016		Lactococcus_phage(100.0%)	1	NA	NA
QBJ10147.1|3090248_3090857_+	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.9	8.6e-13
>prophage 234
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3096846	3099519	5021016		Salmonella_phage(50.0%)	2	NA	NA
QBJ10153.1|3096846_3098253_+	replicative DNA helicase DnaB	NA	A0A1B0VG30	Salmonella_phage	77.5	4.7e-195
QBJ10154.1|3098439_3099519_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	30.2	8.1e-30
>prophage 235
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3105457	3106354	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ10162.1|3105457_3106354_+	sulfolactaldehyde 3-reductase	NA	D2K0C8	Staphylococcus_phage	90.7	7.3e-61
>prophage 236
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3119651	3125829	5021016		uncultured_Mediterranean_phage(33.33%)	4	NA	NA
QBJ10174.1|3119651_3122507_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	3.1e-307
QBJ10175.1|3122830_3123373_+	single-stranded DNA-binding protein	NA	A0A291LCB6	Klebsiella_phage	92.2	5.6e-56
QBJ10176.1|3123460_3124879_-	deaminase	NA	NA	NA	NA	NA
QBJ10177.1|3124974_3125829_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	39.5	1.5e-07
>prophage 237
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3145310	3151691	5021016		uncultured_Caudovirales_phage(33.33%)	4	NA	NA
QBJ10196.1|3145310_3146873_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.7	4.5e-13
QBJ10197.1|3146883_3148977_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	37.6	4.9e-23
QBJ10198.1|3149245_3149914_+	glutathione S-transferase	NA	NA	NA	NA	NA
QBJ10199.1|3150323_3151691_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	71.0	4.4e-158
>prophage 238
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3156187	3161994	5021016		Bacillus_virus(33.33%)	6	NA	NA
QBJ10204.1|3156187_3156949_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	9.1e-20
QBJ11870.1|3156957_3158061_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBJ10205.1|3158076_3159255_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBJ10206.1|3159358_3160384_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	38.2	3.9e-66
QBJ10207.1|3160801_3160987_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ10208.1|3161073_3161994_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	53.7	1.9e-80
>prophage 239
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3175085	3176129	5021016		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
QBJ10220.1|3175085_3176129_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	3.0e-05
>prophage 240
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3204909	3213769	5021016		Thermobifida_phage(20.0%)	11	NA	NA
QBJ10247.1|3204909_3205764_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.2	2.4e-05
QBJ10248.1|3205831_3206302_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
QBJ10249.1|3206412_3206700_-	ribosome hibernation promoting factor	NA	NA	NA	NA	NA
QBJ10250.1|3206723_3208157_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
QBJ10251.1|3208258_3208984_-	lipopolysaccharide ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.3	3.4e-24
QBJ10252.1|3208990_3209548_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
QBJ10253.1|3209525_3210095_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
QBJ10254.1|3210091_3210658_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	87.4	2.5e-62
QBJ10255.1|3210674_3211661_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	32.5	1.9e-41
QBJ10256.1|3211680_3212658_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
QBJ10257.1|3212965_3213769_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	33.7	7.9e-22
>prophage 241
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3217971	3220494	5021016	protease	uncultured_Mediterranean_phage(100.0%)	2	NA	NA
QBJ10264.1|3217971_3219039_-|protease	serine endoprotease DegS	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.1	4.1e-10
QBJ11875.1|3219126_3220494_-	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	28.0	2.1e-22
>prophage 242
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3224610	3225105	5021016	protease	Pseudomonas_phage(100.0%)	1	NA	NA
QBJ10270.1|3224610_3225105_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	53.4	2.6e-28
>prophage 243
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3232025	3234365	5021016		Hokovirus(100.0%)	1	NA	NA
QBJ10273.1|3232025_3234365_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	28.9	6.0e-38
>prophage 244
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3237529	3238534	5021016		Klosneuvirus(100.0%)	1	NA	NA
QBJ10277.1|3237529_3238534_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	46.0	7.2e-73
>prophage 245
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3243481	3245799	5021016		Vibrio_phage(50.0%)	3	NA	NA
QBJ10283.1|3243481_3243754_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	65.1	2.8e-16
QBJ10284.1|3244414_3244774_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBJ10285.1|3244827_3245799_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	26.3	2.1e-08
>prophage 246
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3250066	3250729	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ10291.1|3250066_3250729_-	two-component system response regulator PmrA	NA	W8CYM9	Bacillus_phage	34.8	2.9e-30
>prophage 247
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3254286	3257194	5021016	protease	Micromonas_pusilla_virus(50.0%)	2	NA	NA
QBJ10296.1|3254286_3256230_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	G9E6G3	Micromonas_pusilla_virus	43.5	2.2e-118
QBJ10297.1|3256354_3257194_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.4	1.5e-20
>prophage 248
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3261640	3264334	5021016		Bodo_saltans_virus(100.0%)	1	NA	NA
QBJ10302.1|3261640_3264334_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.6	1.8e-25
>prophage 249
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3269758	3271681	5021016		Klosneuvirus(100.0%)	1	NA	NA
QBJ10308.1|3269758_3271681_+	DEAD/DEAH family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.5	1.1e-50
>prophage 250
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3279631	3285288	5021016		Spodoptera_frugiperda_granulovirus(25.0%)	8	NA	NA
QBJ10316.1|3279631_3279934_-	hypothetical protein	NA	A0A0C5AS36	Spodoptera_frugiperda_granulovirus	51.2	1.8e-11
QBJ10317.1|3280049_3280484_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ10318.1|3280589_3281231_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ10319.1|3281329_3281968_-	acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	32.9	1.4e-10
QBJ10320.1|3281976_3282552_-	ribose 1,5-bisphosphokinase	NA	NA	NA	NA	NA
QBJ10321.1|3282627_3283764_-	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA	NA
QBJ10322.1|3283760_3284468_-	phosphonate C-P lyase system protein PhnL	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	22.3	8.2e-07
QBJ10323.1|3284496_3285288_-	phosphonate C-P lyase system protein PhnK	NA	G3M9Y6	Bacillus_virus	27.6	9.2e-15
>prophage 251
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3289452	3292060	5021016		Cronobacter_phage(50.0%)	2	NA	NA
QBJ10330.1|3289452_3289917_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	59.1	6.7e-50
QBJ11878.1|3289921_3292060_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	63.3	2.7e-263
>prophage 252
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3296941	3300693	5021016		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
QBJ10334.1|3296941_3299644_+	magnesium-translocating P-type ATPase	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	23.5	2.5e-35
QBJ11879.1|3299721_3300693_-	TerC family protein	NA	A0A291LBC5	Escherichia_phage	38.9	4.5e-40
>prophage 253
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3316580	3318983	5021016		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
QBJ10345.1|3316580_3318983_+	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.3	6.9e-13
>prophage 254
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3325437	3326547	5021016		Mycoplasma_phage(100.0%)	1	NA	NA
QBJ10350.1|3325437_3326547_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	48.3	3.1e-16
>prophage 255
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3331311	3331797	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ10356.1|3331311_3331797_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	3.9e-24
>prophage 256
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3337135	3337933	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ10359.1|3337135_3337933_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	24.3	1.2e-14
>prophage 257
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3343781	3344980	5021016		Burkholderia_phage(100.0%)	2	NA	NA
QBJ10364.1|3343781_3344336_+	PAAR domain-containing protein	NA	R4JMI1	Burkholderia_phage	31.1	8.1e-18
QBJ10365.1|3344338_3344980_+	hypothetical protein	NA	R4JJZ3	Burkholderia_phage	55.4	5.1e-56
>prophage 258
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3349379	3354849	5021016	tRNA	Vibrio_phage(33.33%)	4	NA	NA
QBJ10373.1|3349379_3351218_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.3	1.9e-34
QBJ10374.1|3351420_3353169_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	39.5	3.5e-75
QBJ10375.1|3353304_3353520_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QBJ10376.1|3353835_3354849_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	60.1	3.3e-110
>prophage 259
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3358638	3359874	5021016		Salmonella_phage(100.0%)	1	NA	NA
QBJ10380.1|3358638_3359874_-	multifunctional CCA addition/repair protein	NA	K4IEX3	Salmonella_phage	43.4	1.5e-83
>prophage 260
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3365195	3386934	5021016		Staphylococcus_phage(22.22%)	21	NA	NA
QBJ10384.1|3365195_3366623_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	28.2	7.4e-39
QBJ10385.1|3366726_3367977_+	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA	NA
QBJ10386.1|3368042_3368315_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
QBJ10387.1|3368756_3369410_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	44.7	1.0e-43
QBJ10388.1|3369406_3369658_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
QBJ11884.1|3369659_3370448_+	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA	NA
QBJ10389.1|3370500_3371661_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	45.7	1.5e-90
QBJ10390.1|3371670_3372342_-	DUF1190 family protein	NA	A0A173GEW8	Erwinia_phage	48.5	5.3e-40
QBJ10391.1|3372528_3374022_-	outer membrane channel protein TolC	NA	NA	NA	NA	NA
QBJ10392.1|3374252_3374885_+	ADP-ribose diphosphatase	NA	A0A1S6L1P8	Vibrio_phage	35.2	2.9e-19
QBJ10393.1|3374884_3375310_+	DUF1249 family protein	NA	NA	NA	NA	NA
QBJ10394.1|3375337_3376168_+	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA	NA
QBJ10395.1|3376164_3376746_+	esterase YqiA	NA	NA	NA	NA	NA
QBJ10396.1|3376862_3378758_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.5	5.0e-91
QBJ10397.1|3378841_3379147_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QBJ10398.1|3379177_3379765_-	flavodoxin family protein	NA	NA	NA	NA	NA
QBJ10399.1|3380097_3382371_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.8	2.6e-78
QBJ10400.1|3382588_3383326_+	1-acylglycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
QBJ10401.1|3383460_3384876_+	cell division protein FtsP	NA	NA	NA	NA	NA
QBJ10402.1|3384942_3385767_-	2,5-didehydrogluconate reductase DkgA	NA	A0A2H4PQR8	Staphylococcus_phage	43.5	1.5e-60
QBJ10403.1|3385893_3386934_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	32.6	8.6e-45
>prophage 261
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3400582	3407379	5021016		Streptococcus_phage(33.33%)	4	NA	NA
QBJ10415.1|3400582_3401722_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	40.5	6.9e-48
QBJ10416.1|3401839_3403147_+	amino acid deaminase	NA	NA	NA	NA	NA
QBJ10417.1|3403194_3405945_-	two-component sensor histidine kinase BarA	NA	A0A1V0SGX0	Hokovirus	30.4	2.4e-54
QBJ10418.1|3406008_3407379_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	27.2	1.7e-37
>prophage 262
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3410856	3413874	5021016		Only_Syngen_Nebraska_virus(50.0%)	2	NA	NA
QBJ10421.1|3410856_3412494_+	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	51.3	7.9e-154
QBJ10422.1|3412569_3413874_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	57.1	1.1e-126
>prophage 263
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3417315	3417987	5021016		Vibrio_phage(100.0%)	1	NA	NA
QBJ11886.1|3417315_3417987_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A2I7S8X1	Vibrio_phage	35.8	1.2e-12
>prophage 264
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3428014	3499388	5021016	plate,tRNA,tail	Erwinia_phage(31.43%)	68	NA	NA
QBJ10433.1|3428014_3429442_+	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	27.6	4.6e-33
QBJ10434.1|3429443_3430067_+	adenylyl-sulfate kinase	NA	A0A1B0XTK9	Freshwater_phage	39.1	1.1e-07
QBJ10435.1|3430126_3430507_+	DUF3561 family protein	NA	NA	NA	NA	NA
QBJ10436.1|3430674_3430995_+	cell division protein FtsB	NA	NA	NA	NA	NA
QBJ10437.1|3430997_3431717_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QBJ10438.1|3431716_3432190_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
QBJ11889.1|3432209_3433259_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
QBJ11888.1|3433236_3434004_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.7	6.3e-69
QBJ10439.1|3433993_3434620_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	8.8e-37
QBJ11890.1|3434880_3435885_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.2	2.2e-05
QBJ10440.1|3435936_3436923_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	33.1	7.1e-33
QBJ10441.1|3437021_3439577_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.4	1.7e-25
QBJ10442.1|3440001_3442662_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ10443.1|3442815_3443919_+	murein transglycosylase B	NA	NA	NA	NA	NA
QBJ10444.1|3444080_3444575_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	1.7e-27
QBJ10445.1|3444682_3445747_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.6	3.2e-111
QBJ10446.1|3445867_3446557_+	recombination regulator RecX	NA	NA	NA	NA	NA
QBJ10447.1|3446476_3446758_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ10448.1|3446695_3449323_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.5	2.1e-79
QBJ10449.1|3449579_3449765_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
QBJ10450.1|3450796_3451363_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
QBJ10451.1|3451359_3451788_+	DedA family protein	NA	NA	NA	NA	NA
QBJ10452.1|3451873_3453445_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
QBJ10453.1|3453602_3454118_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
QBJ10454.1|3454187_3455477_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
QBJ10455.1|3455493_3456285_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QBJ10456.1|3456449_3457811_+	signal recognition particle protein	NA	NA	NA	NA	NA
QBJ11891.1|3457989_3458238_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QBJ10457.1|3458256_3458805_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QBJ10458.1|3458872_3459646_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
QBJ10459.1|3459694_3460042_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
QBJ10460.1|3460134_3460314_-	late control protein B	NA	F1BUT0	Erwinia_phage	75.5	6.4e-17
QBJ10461.1|3460378_3461479_-|tail	phage tail protein	tail	Q6K1G4	Salmonella_virus	43.6	1.7e-83
QBJ10462.1|3461481_3461952_-|tail	phage tail protein	tail	U5N3F6	Enterobacteria_phage	50.0	1.7e-37
QBJ10463.1|3461948_3463580_-|tail	phage tail tape measure protein	tail	F1BUT7	Erwinia_phage	29.3	7.0e-17
QBJ10464.1|3463572_3463707_-|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	78.9	6.7e-11
QBJ10465.1|3463727_3464015_-|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	60.9	4.3e-23
QBJ10466.1|3464074_3464584_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	68.4	3.1e-64
QBJ10467.1|3464598_3465768_-|tail	phage tail sheath protein	tail	F1BUU3	Erwinia_phage	80.5	8.4e-182
QBJ10468.1|3465938_3466970_-|tail	phage tail protein	tail	A0A2I8TVA9	Erwinia_phage	63.2	1.9e-113
QBJ10469.1|3466959_3467574_-|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	70.9	1.7e-80
QBJ10470.1|3467566_3468475_-|plate	baseplate assembly protein	plate	S4TNY7	Salmonella_phage	74.2	3.5e-119
QBJ10471.1|3468480_3468831_-|plate	baseplate assembly protein	plate	F1BUP4	Erwinia_phage	63.8	9.9e-38
QBJ10472.1|3468827_3469469_-|plate	phage baseplate assembly protein V	plate	A0A0F7LBP2	Escherichia_phage	60.4	6.4e-67
QBJ10473.1|3469550_3470012_-|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	43.3	1.1e-23
QBJ10474.1|3470104_3470533_-	transcriptional regulator	NA	F1BUQ1	Erwinia_phage	48.3	1.4e-06
QBJ10475.1|3470533_3471043_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	61.1	1.5e-55
QBJ10476.1|3471023_3471245_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ10477.1|3471235_3471439_-|tail	phage tail protein	tail	F1BUQ5	Erwinia_phage	56.7	8.6e-18
QBJ10478.1|3471650_3471845_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ10479.1|3471957_3473886_-	replication endonuclease	NA	A0A0F7LA09	Escherichia_phage	50.7	5.8e-180
QBJ10480.1|3473979_3474201_-	conjugal transfer protein TraR	NA	A0A1S6L007	Salmonella_phage	44.3	1.4e-08
QBJ10481.1|3474200_3474476_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ10482.1|3474608_3475199_+	CI repressor	NA	Q6K1G0	Salmonella_virus	51.3	4.1e-52
QBJ10483.1|3475487_3476564_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	48.3	3.9e-85
QBJ10484.1|3476570_3477692_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
QBJ10485.1|3477769_3478924_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
QBJ10486.1|3479235_3479580_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
QBJ10487.1|3479862_3480597_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
QBJ10488.1|3480727_3481705_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
QBJ10489.1|3481704_3482442_+	polyphenol oxidase	NA	NA	NA	NA	NA
QBJ10490.1|3482572_3485146_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.2	1.7e-126
QBJ10491.1|3491106_3492405_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.3	2.9e-42
QBJ10492.1|3492594_3493953_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
QBJ10493.1|3494034_3496755_-	bifunctional acyl-CoA synthetase/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBJ10494.1|3496786_3497491_-	DTW domain-containing protein	NA	NA	NA	NA	NA
QBJ10495.1|3497620_3498040_-	thioredoxin TrxC	NA	A0A191VYI2	Roseobacter_phage	34.4	4.5e-13
QBJ10496.1|3498284_3499388_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
>prophage 265
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3507461	3507644	5021016		Acinetobacter_phage(100.0%)	1	NA	NA
QBJ10505.1|3507461_3507644_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	46.7	4.4e-05
>prophage 266
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3511092	3512289	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ10509.1|3511092_3512289_-	proline/glycine betaine ABC transporter ATP-binding protein ProV	NA	G3M9Y6	Bacillus_virus	38.1	1.7e-28
>prophage 267
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3517105	3522678	5021016		Mycobacterium_phage(50.0%)	6	NA	NA
QBJ10513.1|3517105_3517666_+	glycoside hydrolase	NA	A0A068EMN7	Bacillus_phage	39.3	1.4e-14
QBJ10514.1|3517713_3518757_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA	NA
QBJ10515.1|3518874_3519858_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	70.8	5.5e-134
QBJ10516.1|3519879_3522042_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.3	6.2e-207
QBJ10517.1|3522023_3522428_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
QBJ10518.1|3522438_3522678_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	51.3	2.3e-17
>prophage 268
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3533593	3542243	5021016	tRNA	Brevibacillus_phage(20.0%)	7	NA	NA
QBJ10531.1|3533593_3534553_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.6	5.3e-33
QBJ10532.1|3534578_3535298_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
QBJ10533.1|3535304_3537038_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.8	3.6e-64
QBJ10534.1|3537168_3538266_+	peptide chain release factor 2	NA	NA	NA	NA	NA
QBJ10535.1|3538276_3539806_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	6.2e-84
QBJ10536.1|3540558_3540810_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.2	7.6e-16
QBJ10537.1|3540881_3542243_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	92.1	2.0e-62
>prophage 269
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3556715	3559841	5021016		Leptospira_phage(100.0%)	1	NA	NA
QBJ10551.1|3556715_3559841_+	multidrug transporter subunit MdtC	NA	S5VTK5	Leptospira_phage	21.2	1.3e-48
>prophage 270
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3564109	3569679	5021016		Vibrio_phage(50.0%)	5	NA	NA
QBJ10557.1|3564109_3564379_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	63.2	5.1e-18
QBJ10558.1|3564546_3564804_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
QBJ10559.1|3564807_3565074_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
QBJ10560.1|3565133_3566537_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
QBJ10561.1|3566529_3569679_-	efflux RND transporter permease subunit	NA	S5VL66	Leptospira_phage	18.7	3.2e-10
>prophage 271
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3573972	3575727	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ10565.1|3573972_3575727_-	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	25.8	4.1e-07
>prophage 272
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3591816	3596598	5021016	tRNA	Escherichia_phage(50.0%)	2	NA	NA
QBJ10580.1|3591816_3594075_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	A0A077SK27	Escherichia_phage	31.5	2.7e-75
QBJ10581.1|3594432_3596598_+	bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase	NA	A0A2H4PQU7	Staphylococcus_phage	24.2	3.4e-19
>prophage 273
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3602744	3619360	5021016	tRNA	Hokovirus(16.67%)	14	NA	NA
QBJ10588.1|3602744_3604991_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	24.6	4.6e-11
QBJ10589.1|3605173_3606043_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
QBJ10590.1|3606049_3606844_+	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	72.3	1.4e-119
QBJ10591.1|3607125_3607587_+	prepilin peptidase-dependent protein	NA	NA	NA	NA	NA
QBJ10592.1|3607577_3608165_+	prepilin peptidase-dependent protein	NA	NA	NA	NA	NA
QBJ11893.1|3608209_3608647_+	DUF2509 family protein	NA	NA	NA	NA	NA
QBJ10593.1|3608639_3608984_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
QBJ10594.1|3609286_3612172_+	pitrilysin	NA	A0A1V0SJA4	Klosneuvirus	24.8	5.3e-68
QBJ10595.1|3612248_3613574_-	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
QBJ10596.1|3613802_3615053_+	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	29.8	1.3e-15
QBJ10597.1|3615738_3616851_+	murein transglycosylase A	NA	NA	NA	NA	NA
QBJ10598.1|3616896_3617712_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	30.3	1.4e-13
QBJ10599.1|3617699_3618134_-	cysteine desulfurase sulfur acceptor subunit CsdE	NA	NA	NA	NA	NA
QBJ10600.1|3618154_3619360_-	cysteine desulfurase CsdA	NA	Q2XUY6	environmental_halophage	37.5	1.2e-74
>prophage 274
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3622893	3626105	5021016		Bacillus_phage(50.0%)	3	NA	NA
QBJ10604.1|3622893_3623646_-	flap endonuclease Xni	NA	F8WQ40	Bacillus_phage	29.4	2.1e-08
QBJ10605.1|3623724_3625089_-	LOG family protein	NA	NA	NA	NA	NA
QBJ10606.1|3625259_3626105_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.9	7.2e-42
>prophage 275
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3640791	3641550	5021016		Flavobacterium_phage(100.0%)	1	NA	NA
QBJ10621.1|3640791_3641550_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.2	2.7e-24
>prophage 276
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3650496	3654659	5021016		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
QBJ10630.1|3650496_3651093_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	41.0	7.9e-27
QBJ10631.1|3651176_3654659_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	35.9	2.9e-198
>prophage 277
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3667372	3668404	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ10647.1|3667372_3668404_-	D-methionine ABC transporter, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	2.6e-33
>prophage 278
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3689796	3690600	5021016		Klosneuvirus(100.0%)	1	NA	NA
QBJ10664.1|3689796_3690600_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SKP9	Klosneuvirus	30.1	2.4e-31
>prophage 279
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3693907	3700471	5021016		Paramecium_bursaria_Chlorella_virus(40.0%)	7	NA	NA
QBJ10668.1|3693907_3695296_-	murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	35.1	1.9e-07
QBJ10669.1|3695365_3696121_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
QBJ10670.1|3696164_3696890_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBJ10671.1|3696950_3697418_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	3.6e-51
QBJ10672.1|3697678_3698563_+	N-carbamoylputrescine amidase	NA	A7IVZ1	Paramecium_bursaria_Chlorella_virus	51.5	1.8e-83
QBJ10673.1|3698566_3699652_+	agmatine deiminase	NA	A7RCL2	Paramecium_bursaria_Chlorella_virus	49.6	3.2e-95
QBJ10674.1|3699733_3700471_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	1.9e-38
>prophage 280
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3712574	3713327	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ10686.1|3712574_3713327_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	3.4e-35
>prophage 281
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3716697	3717966	5021016		Moraxella_phage(100.0%)	1	NA	NA
QBJ10691.1|3716697_3717966_-	glutamine amidotransferase	NA	A0A0R6PHX8	Moraxella_phage	27.2	2.3e-12
>prophage 282
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3725251	3725722	5021016		Enterobacteria_phage(100.0%)	1	NA	NA
QBJ10700.1|3725251_3725722_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	50.0	2.1e-38
>prophage 283
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3730318	3733732	5021016		Caulobacter_phage(50.0%)	4	NA	NA
QBJ10703.1|3730318_3730900_+	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	31.6	9.7e-14
QBJ10704.1|3730926_3731694_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
QBJ10705.1|3731664_3732390_-	murein L,D-transpeptidase	NA	NA	NA	NA	NA
QBJ10706.1|3732673_3733732_+	DNA polymerase IV	NA	O64031	Bacillus_phage	26.3	1.6e-14
>prophage 284
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3738103	3740471	5021016		Streptococcus_phage(100.0%)	2	NA	NA
QBJ10711.1|3738103_3739207_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.6	1.7e-59
QBJ10712.1|3739217_3740471_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.8	1.4e-94
>prophage 285
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3750798	3751650	5021016		Staphylococcus_phage(100.0%)	1	NA	NA
QBJ10727.1|3750798_3751650_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.8	4.7e-49
>prophage 286
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3755303	3758055	5021016		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
QBJ10732.1|3755303_3756086_-	CatB-related O-acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	43.2	7.2e-20
QBJ10733.1|3756267_3758055_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.8	1.5e-12
>prophage 287
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3763409	3769144	5021016		Bacillus_phage(50.0%)	2	NA	NA
QBJ10737.1|3763409_3767093_+	exodeoxyribonuclease V subunit beta	NA	A0A068EQC7	Bacillus_phage	22.1	7.8e-08
QBJ10738.1|3767089_3769144_+	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	31.5	6.3e-15
>prophage 288
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3774569	3779092	5021016		Bacillus_phage(50.0%)	5	NA	NA
QBJ10747.1|3774569_3776132_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.2	1.3e-17
QBJ10748.1|3776200_3776473_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ10749.1|3776563_3777292_-	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
QBJ10750.1|3777420_3778527_+	DUF1615 domain-containing protein	NA	NA	NA	NA	NA
QBJ10751.1|3778879_3779092_+	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	78.6	8.4e-24
>prophage 289
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3791105	3794634	5021016		Bacillus_phage(100.0%)	3	NA	NA
QBJ10760.1|3791105_3792545_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.9	1.2e-15
QBJ10761.1|3792544_3793300_+	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
QBJ10762.1|3793296_3794634_+	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	27.1	1.6e-11
>prophage 290
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3800697	3801951	5021016		Aeromonas_phage(100.0%)	1	NA	NA
QBJ10768.1|3800697_3801951_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	51.4	9.5e-99
>prophage 291
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3809148	3813303	5021016		Faustovirus(33.33%)	4	NA	NA
QBJ10776.1|3809148_3810318_+	IscS subfamily cysteine desulfurase	NA	A0A1X7C038	Faustovirus	33.5	5.9e-34
QBJ10777.1|3810399_3811710_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	35.6	4.5e-35
QBJ10778.1|3811792_3812656_+	enhanced serine sensitivity protein SseB	NA	NA	NA	NA	NA
QBJ10779.1|3812877_3813303_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	37.9	6.9e-17
>prophage 292
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3830433	3836713	5021016		Bodo_saltans_virus(33.33%)	4	NA	NA
QBJ10795.1|3830433_3831807_-	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	35.2	2.0e-41
QBJ10796.1|3831807_3833442_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.1	6.0e-85
QBJ10797.1|3833546_3835124_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
QBJ10798.1|3835378_3836713_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	35.6	1.4e-18
>prophage 293
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3851308	3852523	5021016		Oenococcus_phage(100.0%)	1	NA	NA
QBJ10813.1|3851308_3852523_-	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	29.7	2.2e-47
>prophage 294
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3856779	3860959	5021016		Bacillus_phage(66.67%)	4	NA	NA
QBJ10817.1|3856779_3858165_-	U32 family peptidase	NA	Q6DW11	Phage_TP	81.0	7.4e-177
QBJ10818.1|3858351_3858699_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
QBJ10819.1|3858853_3859573_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	9.8e-32
QBJ10820.1|3859573_3860959_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.6	2.3e-29
>prophage 295
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3867257	3868208	5021016		Cyanophage(100.0%)	1	NA	NA
QBJ10823.1|3867257_3868208_-	transaldolase	NA	A0A127KMN5	Cyanophage	35.3	1.9e-14
>prophage 296
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3873450	3895767	5021016		Streptococcus_phage(22.22%)	23	NA	NA
QBJ10828.1|3873450_3874335_-	N-acetylmuramoyl-L-alanine amidase AmiA	NA	M4ZRP4	Bacillus_phage	31.6	6.0e-15
QBJ10829.1|3874611_3875037_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
QBJ10830.1|3875100_3875502_-	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	50.8	2.0e-26
QBJ10831.1|3875716_3876160_+	DUF2919 domain-containing protein	NA	NA	NA	NA	NA
QBJ11902.1|3876322_3876940_+	RpoE-regulated lipoprotein	NA	NA	NA	NA	NA
QBJ10832.1|3877044_3877944_+	Dyp-type peroxidase	NA	S4VVJ7	Pandoravirus	34.5	1.7e-25
QBJ10833.1|3878156_3879179_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ10834.1|3879178_3880009_+	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA	NA
QBJ10835.1|3880008_3880884_+	sulfate/thiosulfate ABC transporter permease CysW	NA	NA	NA	NA	NA
QBJ10836.1|3880873_3881968_+	sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA	G9BWD6	Planktothrix_phage	40.7	1.9e-34
QBJ10837.1|3882083_3882968_+	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	41.0	1.3e-54
QBJ10838.1|3883070_3883754_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBJ10839.1|3883734_3885084_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
QBJ10840.1|3885139_3885649_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
QBJ10841.1|3885697_3887425_-	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	27.8	2.1e-19
QBJ10842.1|3887475_3887733_-	phosphocarrier protein Hpr	NA	NA	NA	NA	NA
QBJ10843.1|3888136_3889102_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	50.3	2.4e-73
QBJ10844.1|3889312_3890113_-	sulfate transporter CysZ	NA	NA	NA	NA	NA
QBJ10845.1|3890336_3891335_+	cell division protein ZipA	NA	NA	NA	NA	NA
QBJ10846.1|3891406_3893428_+	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	50.7	5.2e-147
QBJ10847.1|3893431_3893674_+	cytoplasmic protein	NA	NA	NA	NA	NA
QBJ10848.1|3893752_3894742_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
QBJ10849.1|3894840_3895767_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.7	6.3e-07
>prophage 297
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3915830	3916601	5021016		Clostridioides_phage(100.0%)	1	NA	NA
QBJ10866.1|3915830_3916601_-	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	23.9	1.0e-10
>prophage 298
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3924866	3925700	5021016		Pelagibacter_phage(100.0%)	1	NA	NA
QBJ10875.1|3924866_3925700_-	curli production assembly/transport protein CsgG	NA	M1ICK2	Pelagibacter_phage	43.7	1.9e-42
>prophage 299
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3952691	3952892	5021016		Pectobacterium_phage(100.0%)	1	NA	NA
QBJ10903.1|3952691_3952892_-	DNA polymerase II	NA	H9C187	Pectobacterium_phage	55.0	3.2e-09
>prophage 300
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3964359	3965479	5021016	transposase	Leptospira_phage(100.0%)	1	NA	NA
QBJ10913.1|3964359_3965479_+|transposase	IS3-like element ISRaq1 family transposase	transposase	S5WIU1	Leptospira_phage	42.4	5.1e-51
>prophage 301
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3976177	3980016	5021016		Enterobacteria_phage(50.0%)	4	NA	NA
QBJ10920.1|3976177_3976510_-	preprotein translocase	NA	A0A1B5FPC6	Escherichia_phage	79.1	6.3e-42
QBJ10921.1|3976613_3977864_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	39.8	2.9e-79
QBJ10922.1|3978208_3979126_-	hypothetical protein	NA	E7DYY8	Enterobacteria_phage	66.0	1.8e-102
QBJ10923.1|3979374_3980016_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	W5SAS9	Pithovirus	25.1	1.7e-06
>prophage 302
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	3996097	3997183	5021016		Pandoravirus(100.0%)	1	NA	NA
QBJ10940.1|3996097_3997183_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.7	2.9e-88
>prophage 303
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4012040	4013174	5021016		Brazilian_cedratvirus(100.0%)	1	NA	NA
QBJ10955.1|4012040_4013174_+	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	28.6	8.0e-20
>prophage 304
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4020141	4021659	5021016		Mollivirus(100.0%)	1	NA	NA
QBJ10962.1|4020141_4021659_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.6	2.3e-86
>prophage 305
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4024997	4025771	5021016		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
QBJ10967.1|4024997_4025771_+	histidine ABC transporter ATP-binding protein HisP	NA	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	27.7	1.2e-06
>prophage 306
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4042975	4046388	5021016		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
QBJ10983.1|4042975_4043629_+	sugar phosphatase	NA	M1IMD4	Acanthocystis_turfacea_Chlorella_virus	28.4	7.3e-10
QBJ10984.1|4043947_4045780_+	SLC13 family permease	NA	NA	NA	NA	NA
QBJ10985.1|4045788_4046388_-	5'-deoxynucleotidase	NA	A0A2L0V156	Salmonella_phage	32.5	3.8e-05
>prophage 307
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4072515	4096121	5021016		Pseudomonas_phage(22.22%)	13	NA	NA
QBJ11006.1|4072515_4073889_+	o-succinylbenzoate--CoA ligase	NA	Q75ZG1	Hepacivirus	29.0	8.4e-16
QBJ11007.1|4073956_4075396_-	catalase	NA	A0A2K9L0T1	Tupanvirus	45.7	2.4e-98
QBJ11008.1|4075693_4076239_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11009.1|4076366_4077572_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA	NA
QBJ11010.1|4077711_4077972_-	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	62.5	1.4e-20
QBJ11011.1|4077972_4079103_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	6.2e-174
QBJ11012.1|4079175_4081458_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	64.0	1.5e-283
QBJ11013.1|4082168_4085957_+	AIDA-I family autotransporter YfaL	NA	A0A2L1IV18	Escherichia_phage	26.6	1.7e-29
QBJ11014.1|4086024_4086747_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
QBJ11015.1|4087006_4089658_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	33.0	1.1e-104
QBJ11016.1|4089834_4092696_+	two-component system sensor histidine kinase RcsC	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.3	9.0e-36
QBJ11017.1|4092772_4093423_-	transcriptional regulator RcsB	NA	NA	NA	NA	NA
QBJ11018.1|4093427_4096121_-	phosphotransferase RcsD	NA	A0A1V0SGX0	Hokovirus	25.2	1.2e-13
>prophage 308
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4112353	4114531	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ11021.1|4112353_4114531_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	29.0	2.7e-24
>prophage 309
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4119119	4120247	5021016		Enterobacteria_phage(100.0%)	1	NA	NA
QBJ11024.1|4119119_4120247_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	54.6	1.8e-104
>prophage 310
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4123255	4123498	5021016		Enterobacterial_phage(100.0%)	1	NA	NA
QBJ11027.1|4123255_4123498_-	DinI family protein	NA	K7PKM2	Enterobacterial_phage	68.8	9.0e-22
>prophage 311
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4127086	4132806	5021016		Vibrio_phage(66.67%)	5	NA	NA
QBJ11031.1|4127086_4128091_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	5.1e-87
QBJ11032.1|4128318_4128609_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
QBJ11033.1|4128769_4130533_-	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	42.2	8.4e-101
QBJ11034.1|4130865_4131573_+	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
QBJ11035.1|4131600_4132806_+	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	25.3	1.5e-24
>prophage 312
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4136539	4137283	5021016		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
QBJ11039.1|4136539_4137283_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.8	1.2e-05
>prophage 313
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4142081	4143704	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ11044.1|4142081_4143704_-	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	2.1e-21
>prophage 314
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4149602	4150178	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ11049.1|4149602_4150178_-	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A217EQL1	Bacillus_phage	37.8	6.0e-16
>prophage 315
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4153921	4155391	5021016		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
QBJ11054.1|4153921_4155391_-	fructuronate reductase	NA	H8ZJP8	Ostreococcus_tauri_virus	30.2	2.1e-44
>prophage 316
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4162292	4163159	5021016		Hokovirus(100.0%)	1	NA	NA
QBJ11061.1|4162292_4163159_-	deoxyribonuclease IV	NA	A0A1V0SFR4	Hokovirus	30.5	1.3e-25
>prophage 317
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4168339	4173992	5021016		Bacillus_virus(33.33%)	4	NA	NA
QBJ11066.1|4168339_4169179_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.7	3.1e-13
QBJ11067.1|4169372_4170179_-	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA	NA
QBJ11068.1|4170382_4171492_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	52.5	5.3e-101
QBJ11069.1|4171817_4173992_+	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	25.9	2.6e-43
>prophage 318
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4179869	4185379	5021016		uncultured_Caudovirales_phage(33.33%)	6	NA	NA
QBJ11075.1|4179869_4181180_+	PAS domain S-box protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.1	1.3e-10
QBJ11076.1|4181883_4182123_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11077.1|4182480_4183203_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.2	3.0e-36
QBJ11078.1|4183199_4183859_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
QBJ11079.1|4183967_4184711_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
QBJ11080.1|4185112_4185379_-	DksA/TraR family C4-type zinc finger protein	NA	A0A219YCQ3	Aeromonas_phage	51.1	1.3e-13
>prophage 319
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4199241	4201806	5021016		Staphylococcus_phage(50.0%)	3	NA	NA
QBJ11089.1|4199241_4199907_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	2.2e-09
QBJ11916.1|4199903_4200680_-	ABC transporter permease	NA	NA	NA	NA	NA
QBJ11090.1|4201302_4201806_-	DNA starvation/stationary phase protection protein Dps	NA	A0A2K9VDB4	Lactobacillus_phage	28.2	1.0e-06
>prophage 320
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4205665	4209217	5021016		Enterobacteria_phage(50.0%)	5	NA	NA
QBJ11095.1|4205665_4206199_+	outer membrane protein OmpX	NA	K7PJP9	Enterobacteria_phage	32.3	6.2e-15
QBJ11096.1|4206280_4207045_-	molybdopterin-binding protein	NA	NA	NA	NA	NA
QBJ11097.1|4207037_4207679_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
QBJ11098.1|4207705_4208329_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ11099.1|4208542_4209217_+	response regulator	NA	W8CYM9	Bacillus_phage	36.4	3.7e-33
>prophage 321
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4217857	4223971	5021016	holin	Vibrio_phage(50.0%)	4	NA	NA
QBJ11107.1|4217857_4219912_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	27.7	5.9e-21
QBJ11108.1|4220148_4220748_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
QBJ11109.1|4220792_4222262_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
QBJ11110.1|4222285_4223971_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	32.2	2.7e-56
>prophage 322
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4229000	4233274	5021016		Tupanvirus(50.0%)	4	NA	NA
QBJ11117.1|4229000_4230596_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	27.3	1.5e-56
QBJ11118.1|4230789_4231551_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
QBJ11119.1|4231553_4232795_-	molybdopterin molybdotransferase	NA	NA	NA	NA	NA
QBJ11120.1|4233040_4233274_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	42.7	5.6e-05
>prophage 323
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4239048	4240917	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ11124.1|4239048_4240917_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	1.6e-17
>prophage 324
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4245436	4249651	5021016		Synechococcus_phage(50.0%)	4	NA	NA
QBJ11129.1|4245436_4246561_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.7	2.4e-37
QBJ11130.1|4246604_4247534_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBJ11131.1|4247732_4248860_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
QBJ11132.1|4248985_4249651_+	GTP cyclohydrolase I FolE	NA	R9TJA5	Vibrio_phage	56.2	4.0e-56
>prophage 325
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4253758	4255291	5021016		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
QBJ11136.1|4253758_4255291_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.4	4.5e-10
>prophage 326
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4263661	4266541	5021016		Planktothrix_phage(50.0%)	4	NA	NA
QBJ11918.1|4263661_4264390_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	34.9	1.3e-26
QBJ11145.1|4264600_4265182_-	lipoprotein	NA	NA	NA	NA	NA
QBJ11146.1|4265369_4265696_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
QBJ11147.1|4265692_4266541_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	32.4	1.2e-09
>prophage 327
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4279339	4304215	5021016	protease,tRNA	Escherichia_phage(30.77%)	18	NA	NA
QBJ11157.1|4279339_4279561_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	2.3e-16
QBJ11158.1|4279954_4280275_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	46.1	1.1e-14
QBJ11159.1|4280302_4282585_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	5.1e-167
QBJ11160.1|4282806_4283025_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBJ11161.1|4283118_4283853_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBJ11919.1|4283904_4285626_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-18
QBJ11162.1|4285628_4287395_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.6	4.4e-25
QBJ11163.1|4287543_4288512_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	45.1	1.7e-63
QBJ11164.1|4289244_4289739_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
QBJ11165.1|4289859_4293306_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.8	9.3e-88
QBJ11166.1|4293500_4294112_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
QBJ11167.1|4294119_4295463_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.4	5.8e-78
QBJ11168.1|4295569_4296862_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.8	6.2e-93
QBJ11169.1|4297061_4299518_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	48.5	9.2e-215
QBJ11170.1|4299601_4302049_+	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.1	2.1e-214
QBJ11171.1|4302060_4302678_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.1	1.3e-77
QBJ11172.1|4302679_4303537_+	dimethylsulfoxide reductase	NA	NA	NA	NA	NA
QBJ11173.1|4303606_4304215_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.8	4.4e-25
>prophage 328
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4307596	4310890	5021016		Tetraselmis_virus(100.0%)	2	NA	NA
QBJ11177.1|4307596_4308337_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.8	9.5e-22
QBJ11178.1|4308607_4310890_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	40.9	1.1e-156
>prophage 329
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4314410	4315496	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ11181.1|4314410_4315496_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.1	9.8e-84
>prophage 330
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4319669	4326278	5021016		Bacillus_phage(50.0%)	6	NA	NA
QBJ11183.1|4319669_4319954_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	7.1e-10
QBJ11184.1|4320225_4322472_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA	NA
QBJ11185.1|4322510_4324259_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	29.4	9.6e-57
QBJ11186.1|4324255_4325245_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
QBJ11187.1|4325594_4325804_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	68.8	4.7e-19
QBJ11188.1|4326065_4326278_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	42.6	3.0e-05
>prophage 331
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4340594	4346175	5021016	tRNA	Rhodobacter_phage(33.33%)	5	NA	NA
QBJ11199.1|4340594_4341146_+	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	32.6	4.9e-07
QBJ11200.1|4341197_4341845_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBJ11201.1|4341930_4343121_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
QBJ11922.1|4343362_4344472_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.0	5.3e-109
QBJ11202.1|4344774_4346175_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.9	1.4e-82
>prophage 332
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4351025	4351808	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ11205.1|4351025_4351808_-	aliphatic sulfonates ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	4.2e-28
>prophage 333
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4360825	4362730	5021016		Tupanvirus(100.0%)	1	NA	NA
QBJ11214.1|4360825_4362730_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	27.1	5.2e-48
>prophage 334
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4375641	4377696	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ11227.1|4375641_4377696_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.7	1.3e-15
>prophage 335
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4382146	4382812	5021016	protease	uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ11923.1|4382146_4382812_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	54.9	1.0e-46
>prophage 336
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4388734	4391528	5021016		Bacillus_virus(50.0%)	2	NA	NA
QBJ11239.1|4388734_4389805_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.9	2.6e-28
QBJ11240.1|4389902_4391528_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	22.6	3.9e-12
>prophage 337
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4405292	4407555	5021016		Catovirus(50.0%)	2	NA	NA
QBJ11254.1|4405292_4406252_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1V0SBV6	Catovirus	31.0	1.2e-21
QBJ11255.1|4406451_4407555_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	31.0	4.4e-23
>prophage 338
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4414742	4417984	5021016		Vibrio_phage(50.0%)	3	NA	NA
QBJ11260.1|4414742_4415060_+	PTS sugar transporter	NA	A0A2I7SAJ6	Vibrio_phage	49.3	1.0e-09
QBJ11261.1|4415379_4416636_-	maltoporin	NA	NA	NA	NA	NA
QBJ11262.1|4416913_4417984_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	46.0	1.0e-77
>prophage 339
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4434876	4435575	5021016		Bodo_saltans_virus(100.0%)	1	NA	NA
QBJ11279.1|4434876_4435575_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.7	4.0e-06
>prophage 340
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4469002	4470177	5021016		Canarypox_virus(50.0%)	2	NA	NA
QBJ11309.1|4469002_4469485_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.0	3.3e-23
QBJ11310.1|4469481_4470177_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.1	1.8e-27
>prophage 341
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4476774	4479353	5021016		Bacillus_virus(50.0%)	2	NA	NA
QBJ11317.1|4476774_4477560_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	1.6e-11
QBJ11318.1|4477556_4479353_-	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.5	7.1e-23
>prophage 342
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4484616	4485819	5021016		Moraxella_phage(100.0%)	1	NA	NA
QBJ11323.1|4484616_4485819_+	CTP synthase	NA	A0A0R6PHX8	Moraxella_phage	29.7	9.0e-22
>prophage 343
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4490369	4491113	5021016		Planktothrix_phage(100.0%)	1	NA	NA
QBJ11328.1|4490369_4491113_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.6	4.1e-33
>prophage 344
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4505744	4510587	5021016		Bacillus_virus(50.0%)	4	NA	NA
QBJ11343.1|4505744_4507283_-	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.0	2.6e-13
QBJ11344.1|4507563_4508550_-	autoinducer 2 ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBJ11345.1|4508908_4509106_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11346.1|4509366_4510587_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.2	3.2e-27
>prophage 345
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4527541	4529275	5021016	tRNA	Klosneuvirus(100.0%)	1	NA	NA
QBJ11362.1|4527541_4529275_-|tRNA	arginine--tRNA ligase	tRNA	A0A1V0SIS8	Klosneuvirus	34.1	1.4e-84
>prophage 346
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4535790	4542967	5021016	tRNA	Escherichia_coli_phage(33.33%)	8	NA	NA
QBJ11371.1|4535790_4536609_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	63.0	2.8e-43
QBJ11372.1|4536696_4537272_-	hydrolase	NA	NA	NA	NA	NA
QBJ11373.1|4537607_4539404_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	27.9	3.8e-08
QBJ11374.1|4539403_4539850_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
QBJ11375.1|4539875_4540619_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBJ11376.1|4540727_4541249_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
QBJ11377.1|4541336_4541951_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
QBJ11378.1|4541959_4542967_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	24.0	2.8e-08
>prophage 347
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4548136	4548910	5021016		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
QBJ11383.1|4548136_4548910_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.3	5.8e-22
>prophage 348
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4555569	4556376	5021016		Salmonella_phage(100.0%)	1	NA	NA
QBJ11389.1|4555569_4556376_+	hypothetical protein	NA	A0A0M4R2T6	Salmonella_phage	27.7	3.7e-19
>prophage 349
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4560726	4562370	5021016		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
QBJ11394.1|4560726_4562370_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	1.2e-11
>prophage 350
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4566356	4583067	5021016	tRNA	Enterobacteria_phage(20.0%)	14	NA	NA
QBJ11399.1|4566356_4567247_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	37.9	1.5e-53
QBJ11400.1|4567272_4568691_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
QBJ11401.1|4568859_4569132_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
QBJ11927.1|4569276_4571421_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.7	5.0e-55
QBJ11402.1|4571459_4572572_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
QBJ11403.1|4572718_4573360_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.9	3.2e-34
QBJ11404.1|4573397_4573979_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	41.6	1.5e-30
QBJ11405.1|4574022_4575873_+	outer membrane assembly protein AsmA	NA	NA	NA	NA	NA
QBJ11406.1|4575951_4577541_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	43.6	8.2e-39
QBJ11407.1|4578002_4578890_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.9	1.2e-60
QBJ11408.1|4579005_4579878_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.3	2.3e-107
QBJ11409.1|4579897_4580962_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.0	4.6e-102
QBJ11410.1|4581575_4582115_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	56.4	6.2e-55
QBJ11411.1|4582194_4583067_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	35.8	2.0e-34
>prophage 351
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4592516	4593926	5021016		Synechococcus_phage(100.0%)	1	NA	NA
QBJ11417.1|4592516_4593926_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D7RI04	Synechococcus_phage	30.3	5.6e-31
>prophage 352
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4600299	4601199	5021016		Cellulophaga_phage(100.0%)	1	NA	NA
QBJ11424.1|4600299_4601199_-	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	86.8	5.0e-09
>prophage 353
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4612771	4621742	5021016		Vibrio_phage(100.0%)	6	NA	NA
QBJ11433.1|4612771_4612984_+	transcriptional regulator	NA	M1PVU4	Vibrio_phage	55.4	6.0e-14
QBJ11434.1|4614176_4615154_+	type I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YFC9	Vibrio_phage	34.9	5.4e-49
QBJ11435.1|4615150_4618399_+	type I-F CRISPR-associated helicase Cas3	NA	A0A2I7RCU8	Vibrio_phage	29.2	4.7e-89
QBJ11436.1|4618412_4619750_+	type I-F CRISPR-associated protein Csy1	NA	NA	NA	NA	NA
QBJ11437.1|4619746_4620700_+	type I-F CRISPR-associated protein Csy2	NA	NA	NA	NA	NA
QBJ11438.1|4620722_4621742_+	type I-F CRISPR-associated protein Csy3	NA	A0A2D0YRR8	Vibrio_phage	41.9	6.4e-53
>prophage 354
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4626488	4632395	5021016		uncultured_Caudovirales_phage(50.0%)	5	NA	NA
QBJ11444.1|4626488_4628183_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.6	8.8e-15
QBJ11445.1|4628304_4629975_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.0	2.4e-12
QBJ11446.1|4630037_4630910_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA	NA
QBJ11447.1|4630909_4631959_+	chemotaxis response regulator protein-glutamate methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	6.1e-06
QBJ11448.1|4632005_4632395_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	30.4	1.0e-06
>prophage 355
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4637911	4639342	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ11454.1|4637911_4639342_-	PAAR domain-containing protein	NA	A0A2H4JEI9	uncultured_Caudovirales_phage	27.1	7.7e-28
>prophage 356
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4648775	4649726	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ11465.1|4648775_4649726_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	Q9ZXE4	Bacillus_phage	37.2	4.5e-16
>prophage 357
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4654265	4655015	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ11930.1|4654265_4655015_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.9	4.4e-19
>prophage 358
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4663584	4669080	5021016		Bacillus_thuringiensis_phage(33.33%)	6	NA	NA
QBJ11477.1|4663584_4664556_+	chemotaxis signal transduction protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	27.5	4.1e-25
QBJ11478.1|4665004_4665787_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
QBJ11479.1|4665894_4666458_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	46.3	1.3e-31
QBJ11480.1|4666499_4666826_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11481.1|4666836_4667673_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBJ11482.1|4667865_4669080_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	26.9	2.7e-10
>prophage 359
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4685770	4686598	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ11493.1|4685770_4686598_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	2.4e-26
>prophage 360
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4724581	4725701	5021016	transposase	Leptospira_phage(100.0%)	1	NA	NA
QBJ11523.1|4724581_4725701_+|transposase	IS3-like element ISRaq1 family transposase	transposase	S5WIU1	Leptospira_phage	42.4	5.1e-51
>prophage 361
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4748549	4748744	5021016		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBJ11544.1|4748549_4748744_-	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	50.0	5.9e-08
>prophage 362
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4752073	4752991	5021016		Burkholderia_virus(100.0%)	1	NA	NA
QBJ11941.1|4752073_4752991_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.9	3.9e-09
>prophage 363
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4756018	4756594	5021016		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
QBJ11551.1|4756018_4756594_-	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	33.1	6.0e-24
>prophage 364
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4763822	4764596	5021016		Mollivirus(100.0%)	1	NA	NA
QBJ11560.1|4763822_4764596_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	25.9	1.9e-09
>prophage 365
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4776302	4778472	5021016	transposase	Helicobacter_phage(50.0%)	2	NA	NA
QBJ11573.1|4776302_4776761_-|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	34.4	2.0e-14
QBJ11944.1|4776963_4778472_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.0	4.3e-13
>prophage 366
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4786364	4787111	5021016		Mollivirus(100.0%)	1	NA	NA
QBJ11581.1|4786364_4787111_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	24.0	4.6e-08
>prophage 367
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4800289	4801558	5021016		Sinorhizobium_phage(100.0%)	1	NA	NA
QBJ11591.1|4800289_4801558_-	DUF4102 domain-containing protein	NA	Q8W6M6	Sinorhizobium_phage	29.5	1.6e-45
>prophage 368
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4821717	4823520	5021016		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
QBJ11596.1|4821717_4822413_+	aquaporin Z	NA	A0A1B1ISL4	uncultured_Mediterranean_phage	37.4	8.9e-06
QBJ11597.1|4822506_4823520_+	alpha/beta hydrolase	NA	A0A1J0MAD8	Mycobacterium_phage	34.9	2.8e-08
>prophage 369
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4834508	4837637	5021016		Tupanvirus(33.33%)	4	NA	NA
QBJ11609.1|4834508_4835567_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	44.7	1.5e-81
QBJ11610.1|4835767_4836106_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11611.1|4836205_4837129_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	40.9	1.5e-08
QBJ11612.1|4837427_4837637_+	cold shock-like protein CspE	NA	A0A1W6JNX5	Morganella_phage	80.3	1.1e-23
>prophage 370
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4886467	4887151	5021016		Bacillus_phage(100.0%)	1	NA	NA
QBJ11648.1|4886467_4887151_+	O-methyltransferase	NA	W8CYT3	Bacillus_phage	53.8	3.0e-30
>prophage 371
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4891942	4897372	5021016		Streptococcus_phage(50.0%)	6	NA	NA
QBJ11654.1|4891942_4894048_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	8.6e-60
QBJ11655.1|4894146_4894335_+	plasmid maintenance protein CcdB	NA	NA	NA	NA	NA
QBJ11656.1|4894390_4895080_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA	NA
QBJ11657.1|4895296_4895521_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ11658.1|4895517_4895934_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ11659.1|4895983_4897372_-	adhesin	NA	A0A2C9CZB7	Yersinia_phage	52.2	1.7e-16
>prophage 372
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4900794	4903936	5021016		Anomala_cuprea_entomopoxvirus(50.0%)	3	NA	NA
QBJ11664.1|4900794_4901553_-	zinc ABC transporter ATP-binding protein ZnuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.0	2.0e-14
QBJ11665.1|4901648_4902581_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
QBJ11666.1|4902601_4903936_+	murein DD-endopeptidase MepM	NA	Q8SBN9	Clostridium_phage	37.8	1.8e-15
>prophage 373
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4915267	4923657	5021016	tRNA	Cyanophage(33.33%)	7	NA	NA
QBJ11673.1|4915267_4916743_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	36.8	5.8e-79
QBJ11674.1|4917008_4917650_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
QBJ11675.1|4917715_4918060_-	RidA family protein	NA	NA	NA	NA	NA
QBJ11676.1|4918202_4920116_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.7	2.4e-93
QBJ11677.1|4920245_4920947_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
QBJ11678.1|4921009_4921642_+	Slp family lipoprotein	NA	NA	NA	NA	NA
QBJ11679.1|4921959_4923657_+	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	24.9	1.3e-34
>prophage 374
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4929996	4932174	5021016		Phage_258-320(50.0%)	3	NA	NA
QBJ11688.1|4929996_4931232_-	DUF3596 domain-containing protein	NA	Q20GI2	Phage_258-320	54.1	6.9e-126
QBJ11689.1|4931413_4931608_+	hypothetical protein	NA	NA	NA	NA	NA
QBJ11690.1|4931604_4932174_+	hypothetical protein	NA	S4TSR3	Salmonella_phage	56.5	2.2e-47
>prophage 375
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4943427	4944717	5021016		Mycobacterium_phage(50.0%)	2	NA	NA
QBJ11701.1|4943427_4944258_-	alpha/beta hydrolase	NA	A0A249XTE1	Mycobacterium_phage	28.2	1.0e-11
QBJ11702.1|4944498_4944717_+	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	50.0	1.9e-07
>prophage 376
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4949000	4949831	5021016		Bacillus_virus(100.0%)	1	NA	NA
QBJ11706.1|4949000_4949831_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	54.6	1.0e-69
>prophage 377
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4966885	4970042	5021016	transposase	Shigella_phage(50.0%)	3	NA	NA
QBJ11713.1|4966885_4968062_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	71.8	2.0e-135
QBJ11948.1|4968273_4968462_-	hypothetical protein	NA	NA	NA	NA	NA
QBJ11714.1|4968767_4970042_-	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	26.9	5.8e-11
>prophage 378
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4977674	4978304	5021016		Klosneuvirus(100.0%)	1	NA	NA
QBJ11722.1|4977674_4978304_-	bifunctional nicotinamidase/pyrazinamidase	NA	A0A1V0SL12	Klosneuvirus	24.7	9.2e-10
>prophage 379
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4982293	4984246	5021016		Streptococcus_phage(100.0%)	1	NA	NA
QBJ11726.1|4982293_4984246_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	32.0	7.5e-42
>prophage 380
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	4995541	4996477	5021016	tRNA	Escherichia_phage(100.0%)	1	NA	NA
QBJ11738.1|4995541_4996477_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	88.3	6.4e-132
>prophage 381
CP036490	Rahnella aquatilis strain MEM40 chromosome, complete genome	5021016	5015185	5016289	5021016		Mycoplasma_phage(100.0%)	1	NA	NA
QBJ11751.1|5015185_5016289_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	32.2	4.1e-21
