assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004319465.1_ASM431946v1	CP036254	Xanthomonas oryzae strain BB156-2 chromosome, complete genome	1	292880-293021	1	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	Orphan	AACGCAGGTGAAGCCTTGCAATGGATGTGGTCTGGGGGTTTTTCAGGGG	49	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	NA|71aa|up_2|CP036254.1_282993_283206_-,NA|76aa|down_0|CP036254.1_293329_293557_-,NA|112aa|down_9|CP036254.1_309357_309693_-	NA|903aa|up_9|CP036254.1_273166_275875_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|348aa|up_8|CP036254.1_275981_277025_+	PRK14013, PRK14013, hypothetical protein; Provisional	NA|833aa|up_7|CP036254.1_277640_280139_+	PRK09209, PRK09209, ribonucleoside-diphosphate reductase subunit alpha	NA|348aa|up_6|CP036254.1_280336_281380_+	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|280aa|up_5|CP036254.1_281430_282270_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|165aa|up_4|CP036254.1_282283_282778_+	PRK09271, PRK09271, flavodoxin; Provisional	NA|109aa|up_3|CP036254.1_282749_283076_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|71aa|up_2|CP036254.1_282993_283206_-	NA	NA|459aa|up_1|CP036254.1_283846_285223_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|344aa|up_0|CP036254.1_285185_286217_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|76aa|down_0|CP036254.1_293329_293557_-	NA	NA|1153aa|down_1|CP036254.1_293565_297024_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|339aa|down_2|CP036254.1_298044_299061_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|629aa|down_3|CP036254.1_300663_302550_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|286aa|down_4|CP036254.1_302788_303646_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|204aa|down_5|CP036254.1_304084_304696_-	pfam14470, bPH_3, Bacterial PH domain	NA|271aa|down_6|CP036254.1_304888_305701_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|353aa|down_7|CP036254.1_306170_307229_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|430aa|down_8|CP036254.1_307628_308918_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|112aa|down_9|CP036254.1_309357_309693_-	NA
GCA_004319465.1_ASM431946v1	CP036254	Xanthomonas oryzae strain BB156-2 chromosome, complete genome	2	344378-347121	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	 Type I-U?,Type I-U,Type I-C	GTCGCGTCCTCACGGGCGCGTGGATTGAAAC,GTCGCGTCCTCACGGGCGCGTGGATTGAAAC,GTCGCGTCCTCACGGGCGCGTGGATTGAAAC,GTCGCGTCCTCACGGGCGCGTGGATTGAAAC	31,31,31,31	0	0	NA	NA	I-C:I-C:I-C:I-C	40,41,41,40	41	TypeI-U?,TypeI-U,TypeI-C	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	NA|76aa|up_7|CP036254.1_335906_336134_-,NA	NA|1199aa|up_9|CP036254.1_329622_333219_+	pfam03377, TAL_effector, TAL effector repeat	NA|459aa|up_8|CP036254.1_333403_334780_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|76aa|up_7|CP036254.1_335906_336134_-	NA	cas3|764aa|up_6|CP036254.1_336116_338408_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|225aa|up_5|CP036254.1_338820_339495_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|614aa|up_4|CP036254.1_339491_341333_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|289aa|up_3|CP036254.1_341329_342196_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|211aa|up_2|CP036254.1_342215_342848_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_1|CP036254.1_342850_343885_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|CP036254.1_343899_344190_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|255aa|down_0|CP036254.1_347161_347925_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|132aa|down_1|CP036254.1_350367_350763_+	TIGR01690, ICE_RAQPRD, integrative conjugative element protein, RAQPRD family	NA|80aa|down_2|CP036254.1_350759_350999_+	TIGR03758, conj_TIGR03758, integrating conjugative element protein, PFL_4701 family	NA|123aa|down_3|CP036254.1_351018_351387_+	TIGR03745, conj_TIGR03745, integrating conjugative element membrane protein, PFL_4702 family	NA|142aa|down_4|CP036254.1_351398_351824_+	pfam11990, DUF3487, Protein of unknown function (DUF3487)	NA|232aa|down_5|CP036254.1_351820_352516_+	TIGR03746, conj_TIGR03746, integrating conjugative element protein, PFL_4703 family	NA|319aa|down_6|CP036254.1_352512_353469_+	pfam11920, DUF3438, Protein of unknown function (DUF3438)	NA|486aa|down_7|CP036254.1_353458_354916_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|146aa|down_8|CP036254.1_354920_355358_+	TIGR03751, conj_TIGR03751, conjugative transfer region lipoprotein, TIGR03751 family	NA|982aa|down_9|CP036254.1_355357_358303_+	TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706 family
GCA_004319465.1_ASM431946v1	CP036254	Xanthomonas oryzae strain BB156-2 chromosome, complete genome	3	1836542-1836640	3	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	Orphan	GGGGTTTTTCAGGGGCGACTACT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	NA|102aa|up_3|CP036254.1_1829942_1830248_+,NA|83aa|up_1|CP036254.1_1832298_1832547_+,NA|83aa|down_6|CP036254.1_1844608_1844857_-	NA|185aa|up_9|CP036254.1_1822117_1822672_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|477aa|up_8|CP036254.1_1822892_1824323_+	PRK08760, PRK08760, replicative DNA helicase; Provisional	NA|485aa|up_7|CP036254.1_1824389_1825844_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|244aa|up_6|CP036254.1_1826260_1826992_+	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|103aa|up_5|CP036254.1_1827167_1827476_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|325aa|up_4|CP036254.1_1828873_1829848_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|102aa|up_3|CP036254.1_1829942_1830248_+	NA	NA|552aa|up_2|CP036254.1_1830444_1832100_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|83aa|up_1|CP036254.1_1832298_1832547_+	NA	NA|459aa|up_0|CP036254.1_1834405_1835782_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|298aa|down_0|CP036254.1_1838315_1839209_-	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional	NA|200aa|down_1|CP036254.1_1839275_1839875_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|287aa|down_2|CP036254.1_1839910_1840771_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|347aa|down_3|CP036254.1_1840788_1841829_-	cd03510, Rhizobitoxine-FADS-like, This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins	NA|441aa|down_4|CP036254.1_1841855_1843178_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|385aa|down_5|CP036254.1_1843177_1844332_-	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|83aa|down_6|CP036254.1_1844608_1844857_-	NA	NA|368aa|down_7|CP036254.1_1846244_1847347_-	pfam00665, rve, Integrase core domain	NA|344aa|down_8|CP036254.1_1847818_1848850_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|459aa|down_9|CP036254.1_1849979_1851356_-	pfam05598, DUF772, Transposase domain (DUF772)
GCA_004319465.1_ASM431946v1	CP036254	Xanthomonas oryzae strain BB156-2 chromosome, complete genome	4	2827197-2827276	4	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	Orphan	GAGAGGGTTTTTCAGGGGCGACTA	24	1	41	2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252|2827221-2827252	CP036254.1_103728-103697|CP036254.1_286281-286312|CP036254.1_291471-291440|CP036254.1_313396-313365|CP036254.1_503524-503555|CP036254.1_505045-505076|CP036254.1_508956-508925|CP036254.1_554854-554885|CP036254.1_825802-825771|CP036254.1_988933-988902|CP036254.1_1664219-1664188|CP036254.1_1720757-1720726|CP036254.1_1850011-1849980|CP036254.1_2451447-2451416|CP036254.1_2465673-2465704|CP036254.1_2466571-2466540|CP036254.1_2672154-2672185|CP036254.1_3000849-3000880|CP036254.1_3003408-3003439|CP036254.1_3004928-3004959|CP036254.1_3041557-3041526|CP036254.1_3403262-3403293|CP036254.1_3567813-3567782|CP036254.1_3703864-3703895|CP036254.1_4267163-4267132|CP036254.1_4425461-4425430|CP036254.1_4479320-4479351|CP036254.1_4731725-4731694|CP036254.1_4737778-4737809|CP036254.1_4880830-4880861|CP036254.1_4887827-4887858|CP036254.1_4958208-4958177|CP036254.1_710329-710298|CP036254.1_828161-828130|CP036254.1_1834437-1834406|CP036254.1_1836508-1836539|CP036254.1_4674158-4674189|CP036254.1_4722663-4722694|CP036254.1_4879005-4879036|CP036254.1_4910041-4910072|CP036254.1_4995378-4995409	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csa3,DEDDh,WYL,RT	NA|75aa|up_6|CP036254.1_2810287_2810512_-,NA|175aa|down_3|CP036254.1_2831767_2832292_-,NA|104aa|down_8|CP036254.1_2837585_2837897_+	NA|305aa|up_9|CP036254.1_2806826_2807741_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|109aa|up_8|CP036254.1_2807750_2808077_-	pfam01371, Trp_repressor, Trp repressor protein	NA|471aa|up_7|CP036254.1_2808834_2810247_-	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|75aa|up_6|CP036254.1_2810287_2810512_-	NA	NA|248aa|up_5|CP036254.1_2811513_2812257_-	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain	NA|435aa|up_4|CP036254.1_2812359_2813664_-	PRK09225, PRK09225, threonine synthase; Validated	NA|105aa|up_3|CP036254.1_2813825_2814140_+	TIGR02118, TIGR02118, conserved hypothetical protein	NA|558aa|up_2|CP036254.1_2814862_2816536_-	pfam07519, Tannase, Tannase and feruloyl esterase	NA|323aa|up_1|CP036254.1_2817075_2818044_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|836aa|up_0|CP036254.1_2818040_2820548_-	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional	NA|605aa|down_0|CP036254.1_2828041_2829856_+	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family	NA|144aa|down_1|CP036254.1_2829845_2830277_+	COG2994, HlyC, ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]	NA|426aa|down_2|CP036254.1_2830339_2831617_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|175aa|down_3|CP036254.1_2831767_2832292_-	NA	NA|264aa|down_4|CP036254.1_2832334_2833126_-	pfam05308, Mito_fiss_reg, Mitochondrial fission regulator	NA|735aa|down_5|CP036254.1_2833234_2835439_-	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|433aa|down_6|CP036254.1_2835435_2836734_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|114aa|down_7|CP036254.1_2836999_2837341_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|104aa|down_8|CP036254.1_2837585_2837897_+	NA	NA|131aa|down_9|CP036254.1_2837945_2838338_+	pfam15947, DUF4755, Domain of unknown function (DUF4755)
