assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004295125.1_ASM429512v1	CP036170	[Clostridium] scindens ATCC 35704 chromosome, complete genome	1	193245-193946	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no		cas3,csa3,PrimPol,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG	Orphan	ATTTCAATCCACGTTCCCATTGCAGGGAACGAC,ATTTCAATCCACGTTCCCATTGCAGGGAACGAC,ATTTCAATCCACGTTCCCATTGCAGGGAACGAC	33,33,33	1	1	193611-193644	CP036170.1_310914-310947	NA:NA:NA	10,9,9	10	Orphan	cas3,csa3,PrimPol,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG	NA|146aa|up_1|CP036170.1_191226_191664_-,NA|248aa|down_1|CP036170.1_197066_197810_-	NA|344aa|up_9|CP036170.1_184728_185760_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|239aa|up_8|CP036170.1_185756_186473_-	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily	NA|172aa|up_7|CP036170.1_186638_187154_-	pfam02829, 3H, 3H domain	NA|284aa|up_6|CP036170.1_187189_188041_-	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|397aa|up_5|CP036170.1_188069_189260_-	PRK06175, PRK06175, L-aspartate oxidase; Provisional	NA|302aa|up_4|CP036170.1_189305_190211_-	pfam02445, NadA, Quinolinate synthetase A protein	NA|76aa|up_3|CP036170.1_190282_190510_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|73aa|up_2|CP036170.1_190682_190901_-	cd13612, PBP2_ProWX, Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|146aa|up_1|CP036170.1_191226_191664_-	NA	NA|299aa|up_0|CP036170.1_191906_192803_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|877aa|down_0|CP036170.1_194349_196980_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|248aa|down_1|CP036170.1_197066_197810_-	NA	NA|534aa|down_2|CP036170.1_198551_200153_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|466aa|down_3|CP036170.1_200300_201698_-	PRK02256, PRK02256, putative aminopeptidase 1; Provisional	NA|258aa|down_4|CP036170.1_201898_202672_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|398aa|down_5|CP036170.1_202814_204008_-	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional	NA|355aa|down_6|CP036170.1_204037_205102_-	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated	NA|415aa|down_7|CP036170.1_205403_206648_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|237aa|down_8|CP036170.1_206727_207438_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|507aa|down_9|CP036170.1_207476_208997_-	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional
GCA_004295125.1_ASM429512v1	CP036170	[Clostridium] scindens ATCC 35704 chromosome, complete genome	2	1473945-1474841	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	PD-DExK,cas10,csm3gr7,csm4gr5,cas6	cas3,csa3,PrimPol,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG	Type III-A,Type III-D,Type III-C,Type III-B	GTCTCCACCTGTGT-GGTGGAGTGGATTGAAAG,GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG,GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG	33,32,32	1	1	1474776-1474809	CP036170.1_320386-320419	NA:NA:NA	13,13,13	13	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas3,csa3,PrimPol,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG	NA|34aa|up_7|CP036170.1_1466653_1466755_-,NA|141aa|up_6|CP036170.1_1466956_1467379_+,PD-DExK|296aa|up_5|CP036170.1_1467479_1468367_+,NA|274aa|up_1|CP036170.1_1472069_1472891_+,NA|338aa|down_0|CP036170.1_1475313_1476327_+	NA|296aa|up_9|CP036170.1_1465489_1466377_-	cd03770, SR_TndX_transposase, Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases	NA|78aa|up_8|CP036170.1_1466429_1466663_-	pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus	NA|34aa|up_7|CP036170.1_1466653_1466755_-	NA	NA|141aa|up_6|CP036170.1_1466956_1467379_+	NA	PD-DExK|296aa|up_5|CP036170.1_1467479_1468367_+	NA	cas10|665aa|up_4|CP036170.1_1468368_1470363_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|229aa|up_3|CP036170.1_1470386_1471073_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|327aa|up_2|CP036170.1_1471085_1472066_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|274aa|up_1|CP036170.1_1472069_1472891_+	NA	cas6|292aa|up_0|CP036170.1_1472883_1473759_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|338aa|down_0|CP036170.1_1475313_1476327_+	NA	NA|382aa|down_1|CP036170.1_1476536_1477682_+	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein	NA|426aa|down_2|CP036170.1_1477835_1479113_+	pfam06050, HGD-D, 2-hydroxyglutaryl-CoA dehydratase, D-component	NA|87aa|down_3|CP036170.1_1479143_1479404_+	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|185aa|down_4|CP036170.1_1479479_1480034_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|219aa|down_5|CP036170.1_1480397_1481054_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|416aa|down_6|CP036170.1_1481243_1482491_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|610aa|down_7|CP036170.1_1482855_1484685_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|192aa|down_8|CP036170.1_1484720_1485296_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|118aa|down_9|CP036170.1_1485339_1485693_+	cd07743, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain
GCA_004295125.1_ASM429512v1	CP036170	[Clostridium] scindens ATCC 35704 chromosome, complete genome	3	1966370-1969023	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,csa3,PrimPol,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG	Type I-C, Type I-U?,Type I-U	GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT,GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT,GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT	33,33,33	4	4	1967476-1967509|1967947-1967980|1968349-1968381|1968415-1968449	CP036170.1_304531-304564|CP036170.1_329599-329632|CP036170.1_322943-322975|CP036170.1_318636-318670	NA:NA:NA	39,39,14	39	TypeI-C,TypeI-U?,TypeI-U	cas3,csa3,PrimPol,RT,PD-DExK,cas10,csm3gr7,csm4gr5,cas6,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG	NA|59aa|up_7|CP036170.1_1957983_1958160_+,NA|85aa|down_9|CP036170.1_1974699_1974954_+	NA|442aa|up_9|CP036170.1_1954901_1956227_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|520aa|up_8|CP036170.1_1956258_1957818_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|59aa|up_7|CP036170.1_1957983_1958160_+	NA	cas3|808aa|up_6|CP036170.1_1958210_1960634_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|up_5|CP036170.1_1960649_1961390_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|660aa|up_4|CP036170.1_1961376_1963356_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|285aa|up_3|CP036170.1_1963352_1964207_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|219aa|up_2|CP036170.1_1964199_1964856_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|CP036170.1_1964858_1965890_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|CP036170.1_1965898_1966189_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|216aa|down_0|CP036170.1_1969048_1969696_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|132aa|down_1|CP036170.1_1969714_1970110_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|69aa|down_2|CP036170.1_1970138_1970345_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|114aa|down_3|CP036170.1_1970341_1970683_+	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|324aa|down_4|CP036170.1_1971212_1972184_+	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|342aa|down_5|CP036170.1_1972235_1973261_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|342aa|down_6|CP036170.1_1973290_1974316_+	cd03522, MoeA_like, MoeA_like	NA|40aa|down_7|CP036170.1_1974258_1974378_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|84aa|down_8|CP036170.1_1974399_1974651_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|85aa|down_9|CP036170.1_1974699_1974954_+	NA
