The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	4901034	22471	59614	4901034	transposase,integrase	Gordonia_phage(33.33%)	35	21700:21716	42849:42865
21700:21716	attL	GCTGCTGATCGGTTTGG	NA	NA	NA	NA
QBE80347.1|22471_23860_+|integrase	integrase	integrase	NA	NA	NA	NA
QBE80348.1|24531_25551_+	hypothetical protein	NA	NA	NA	NA	NA
QBE80349.1|25676_27635_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75974.1|27627_28053_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75975.1|28240_29272_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBE75976.1|29419_29695_+	hypothetical protein	NA	NA	NA	NA	NA
QBE80350.1|29815_31222_+	DUF1254 domain-containing protein	NA	M1IA53	Paramecium_bursaria_Chlorella_virus	39.7	1.3e-80
QBE75977.1|31363_33739_+	arylsulfatase	NA	NA	NA	NA	NA
QBE75978.1|34072_35047_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
QBE75979.1|35057_35531_-	HIT family protein	NA	NA	NA	NA	NA
QBE75980.1|35855_36299_+	hypothetical protein	NA	NA	NA	NA	NA
QBE80351.1|36718_38635_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
QBE75981.1|38726_39836_-|transposase	transposase	transposase	NA	NA	NA	NA
QBE75982.1|39832_40546_-	hypothetical protein	NA	NA	NA	NA	NA
QBE75983.1|40817_41915_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0U4JD08	Gordonia_phage	31.4	5.9e-28
QBE75984.1|41943_42348_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75985.1|42417_42627_-	hypothetical protein	NA	NA	NA	NA	NA
QBE75986.1|42657_44598_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.4	6.2e-65
42849:42865	attR	GCTGCTGATCGGTTTGG	NA	NA	NA	NA
QBE75987.1|44793_46101_-	MFS transporter	NA	NA	NA	NA	NA
QBE75988.1|46052_47153_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA	NA
QBE75989.1|47264_47714_-	hypothetical protein	NA	NA	NA	NA	NA
QBE75990.1|47784_48321_-	hypothetical protein	NA	NA	NA	NA	NA
QBE75991.1|48365_48572_-	copper chaperone	NA	NA	NA	NA	NA
QBE75992.1|48758_49247_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75993.1|49341_49641_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75994.1|49808_50210_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75995.1|50688_50949_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBE75996.1|51117_52083_+	hypothetical protein	NA	NA	NA	NA	NA
QBE75997.1|52141_53338_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0U4JD08	Gordonia_phage	30.0	8.4e-20
QBE75998.1|53360_54569_+|transposase	transposase	transposase	H7BW99	unidentified_phage	28.6	2.0e-05
QBE80352.1|54555_56787_+|transposase	transposase	transposase	NA	NA	NA	NA
QBE75999.1|56779_57208_+	hypothetical protein	NA	NA	NA	NA	NA
QBE76000.1|57311_57491_+	hypothetical protein	NA	NA	NA	NA	NA
QBE76001.1|57563_58808_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
QBE76002.1|58807_59614_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	44.2	2.7e-54
>prophage 2
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	4901034	453308	480182	4901034	transposase,holin,protease	Staphylococcus_phage(25.0%)	25	NA	NA
QBE76353.1|453308_454574_+|protease	acid resistance serine protease MarP	protease	NA	NA	NA	NA
QBE76354.1|454547_455510_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBE76355.1|455542_456064_-|holin	phage holin family protein	holin	NA	NA	NA	NA
QBE80380.1|456313_457009_+|protease	serine protease	protease	NA	NA	NA	NA
QBE76356.1|457098_459075_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	37.3	5.9e-79
QBE76357.1|459258_460878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBE76358.1|460874_461846_+	ABC transporter permease	NA	NA	NA	NA	NA
QBE76359.1|461838_462753_+	ABC transporter permease	NA	NA	NA	NA	NA
QBE76360.1|462753_464403_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.6e-21
QBE76361.1|464427_465171_+	oxidoreductase	NA	NA	NA	NA	NA
QBE76362.1|465586_466468_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
QBE76363.1|466653_466896_+	hypothetical protein	NA	NA	NA	NA	NA
QBE76364.1|466852_467926_+	helicase	NA	NA	NA	NA	NA
QBE76365.1|467922_468984_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
QBE76366.1|469316_469694_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QBE76367.1|469690_471673_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	39.8	1.8e-104
QBE76368.1|471747_472011_-	alkylmercury lyase	NA	NA	NA	NA	NA
QBE80381.1|472414_473002_+	DUF1942 domain-containing protein	NA	NA	NA	NA	NA
QBE80382.1|473346_473733_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
QBE76369.1|473729_474674_+	M56 family peptidase	NA	NA	NA	NA	NA
QBE76370.1|475123_475930_-|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	44.2	2.7e-54
QBE76371.1|475929_477174_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
QBE76372.1|477246_477426_-	hypothetical protein	NA	NA	NA	NA	NA
QBE76373.1|477529_477958_-	hypothetical protein	NA	NA	NA	NA	NA
QBE80383.1|477950_480182_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	4901034	2532691	2543006	4901034	transposase,integrase	Leptospira_phage(100.0%)	9	2522252:2522267	2547338:2547353
2522252:2522267	attL	GGCGGCGTCGAGTGCG	NA	NA	NA	NA
QBE78223.1|2532691_2533729_-|transposase	transposase	transposase	NA	NA	NA	NA
QBE78224.1|2533731_2535783_-|integrase	integrase	integrase	NA	NA	NA	NA
QBE78225.1|2535779_2536535_-|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
QBE78226.1|2537128_2538250_+|integrase	site-specific integrase	integrase	S5W9T9	Leptospira_phage	21.0	2.3e-11
QBE78227.1|2538242_2538608_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBE78228.1|2538585_2540043_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
QBE78229.1|2540119_2540344_-	hypothetical protein	NA	NA	NA	NA	NA
QBE78230.1|2540419_2541682_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
QBE78231.1|2541761_2543006_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
2547338:2547353	attR	CGCACTCGACGCCGCC	NA	NA	NA	NA
>prophage 4
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	4901034	2829343	2837902	4901034		Streptococcus_phage(16.67%)	7	NA	NA
QBE78491.1|2829343_2830015_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	31.1	4.9e-17
QBE78492.1|2830128_2831052_+	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	31.6	1.1e-08
QBE78493.1|2831053_2831923_+	class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	46.0	1.5e-55
QBE78494.1|2832024_2834391_-	RelA/SpoT family protein	NA	A0A291L9W9	Bordetella_phage	38.4	1.8e-13
QBE78495.1|2834421_2834955_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	36.4	1.1e-14
QBE78496.1|2834951_2836628_-	hypothetical protein	NA	NA	NA	NA	NA
QBE78497.1|2836627_2837902_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	28.6	1.5e-22
>prophage 5
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	4901034	4109483	4118982	4901034		Burkholderia_phage(25.0%)	9	NA	NA
QBE79645.1|4109483_4110608_-	acyltransferase	NA	A9YX16	Burkholderia_phage	28.7	2.7e-20
QBE79646.1|4110604_4111873_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	40.3	3.3e-06
QBE79647.1|4111922_4112729_-	macrocin O-methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	52.6	4.9e-56
QBE79648.1|4112939_4113632_-	class I SAM-dependent methyltransferase	NA	Q98VI8	Paramecium_bursaria_Chlorella_virus	30.2	3.7e-12
QBE79649.1|4113864_4114998_-	acyltransferase	NA	A9YX16	Burkholderia_phage	26.2	7.0e-16
QBE79650.1|4115165_4116227_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A0E3IB24	Synechococcus_phage	25.8	1.6e-17
QBE79651.1|4116390_4117713_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	39.2	2.2e-05
QBE79652.1|4117792_4118092_-	hypothetical protein	NA	NA	NA	NA	NA
QBE79653.1|4118115_4118982_+	glucose-1-phosphate thymidylyltransferase	NA	H9NC64	Sphingomonas_phage	57.5	2.8e-89
>prophage 6
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	4901034	4806977	4815349	4901034		Mycobacterium_phage(33.33%)	7	NA	NA
QBE80259.1|4806977_4808447_+	class A beta-lactamase-related serine hydrolase	NA	A0A1J0GRK9	Mycobacterium_phage	28.8	4.2e-13
QBE80260.1|4808574_4809387_+	DUF1906 domain-containing protein	NA	A0A2D1GEF2	Gordonia_phage	49.1	3.1e-50
QBE80261.1|4809435_4810632_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JL93	Lactococcus_phage	47.3	2.6e-05
QBE80262.1|4811061_4811880_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2D1GEV9	Mycobacterium_phage	55.0	3.3e-68
QBE80263.1|4812670_4813120_+	hypothetical protein	NA	NA	NA	NA	NA
QBE80264.1|4813140_4814592_+	HAMP domain-containing histidine kinase	NA	Q8QKV4	Ectocarpus_siliculosus_virus	33.6	2.9e-06
QBE80265.1|4814671_4815349_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.4	4.4e-26
