The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	0	15242	2041516	tail,holin	Lactobacillus_phage(83.33%)	13	NA	NA
QBE45499.1|1733_2621_+|tail	phage tail family protein	tail	NA	NA	NA	NA
QBE45500.1|2617_4849_+	peptidase M23	NA	E9LUJ4	Lactobacillus_phage	34.7	1.1e-116
QBE45501.1|4832_8414_+	chromosome partitioning protein ParA	NA	A0A0N7IRA4	Lactobacillus_phage	66.2	4.9e-15
QBE45502.1|8406_8679_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45503.1|8721_8994_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45504.1|9006_10152_+	SGNH/GDSL hydrolase family protein	NA	E9LUJ8	Lactobacillus_phage	42.4	9.6e-82
QBE45505.1|10148_11264_+	DUF2479 domain-containing protein	NA	E9LUJ9	Lactobacillus_phage	37.2	5.2e-56
QBE45506.1|11275_11680_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45507.1|11672_11792_+	XkdX family protein	NA	NA	NA	NA	NA
QBE45508.1|11830_12382_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45509.1|12348_13590_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45510.1|13603_14053_+|holin	holin	holin	A0A1P8VVQ3	Streptococcus_phage	36.2	4.0e-15
QBE45511.1|14042_15242_+	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	62.7	4.1e-51
>prophage 2
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	22426	30420	2041516	integrase	Staphylococcus_phage(33.33%)	6	25062:25079	27243:27260
QBE45518.1|22426_23959_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.7	4.3e-53
QBE45519.1|23948_24536_+	type I restriction endonuclease	NA	NA	NA	NA	NA
QBE45520.1|24456_25092_-	type I restriction endonuclease	NA	NA	NA	NA	NA
25062:25079	attL	CAACTAAATTATCATTTA	NA	NA	NA	NA
QBE45521.1|25134_26109_+|integrase	integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	30.3	1.9e-30
QBE45522.1|26113_27241_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBE45523.1|27294_30420_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	29.4	2.2e-67
27243:27260	attR	CAACTAAATTATCATTTA	NA	NA	NA	NA
>prophage 3
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	35071	39147	2041516		Staphylococcus_phage(80.0%)	5	NA	NA
QBE47378.1|35071_36139_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.4	3.7e-43
QBE45527.1|36131_36734_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.6	1.0e-29
QBE45528.1|36733_37915_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	47.6	9.6e-93
QBE45529.1|37917_38376_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	42.0	2.7e-27
QBE45530.1|38421_39147_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	45.4	3.0e-28
>prophage 4
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	45695	53088	2041516		Staphylococcus_phage(33.33%)	7	NA	NA
QBE45536.1|45695_47117_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	34.2	9.2e-74
QBE45537.1|47182_47341_-	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA	NA
QBE45538.1|47347_49339_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
QBE45539.1|49340_49547_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
QBE45540.1|49770_50568_+	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FFL6	Cedratvirus	26.4	2.8e-11
QBE45541.1|50579_51869_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
QBE45542.1|51849_53088_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	45.4	1.0e-105
>prophage 5
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	60904	62668	2041516		Enterobacteria_phage(100.0%)	1	NA	NA
QBE45551.1|60904_62668_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	30.1	1.9e-60
>prophage 6
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	75258	79523	2041516		Streptococcus_phage(50.0%)	3	NA	NA
QBE45563.1|75258_78123_+	DEAD/DEAH box helicase	NA	A0A1X9I5C8	Streptococcus_phage	35.5	9.5e-62
QBE45564.1|78216_78735_+	peptidase	NA	NA	NA	NA	NA
QBE45565.1|78818_79523_+	DnaD domain protein	NA	A0T2N5	Geobacillus_phage	33.3	1.2e-05
>prophage 7
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	82815	83478	2041516		Bacillus_phage(100.0%)	1	NA	NA
QBE45568.1|82815_83478_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	36.6	7.4e-26
>prophage 8
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	88501	89413	2041516		Bodo_saltans_virus(100.0%)	1	NA	NA
QBE45576.1|88501_89413_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.7	4.2e-11
>prophage 9
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	93217	95995	2041516		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
QBE45579.1|93217_94900_-	fibronectin/fibrinogen-binding protein	NA	M1I5P2	Paramecium_bursaria_Chlorella_virus	38.0	1.2e-08
QBE45580.1|95116_95995_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.4	6.0e-15
>prophage 10
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	99260	104568	2041516		Streptococcus_phage(33.33%)	5	NA	NA
QBE45585.1|99260_99806_+	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	31.6	9.1e-14
QBE45586.1|99893_101276_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.0e-29
QBE45587.1|101770_103114_-	PFL family protein	NA	NA	NA	NA	NA
QBE45588.1|103138_103405_-	ACT domain-containing protein	NA	NA	NA	NA	NA
QBE45589.1|103665_104568_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	1.2e-55
>prophage 11
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	110639	116984	2041516		Ostreococcus_tauri_virus(33.33%)	6	NA	NA
QBE45597.1|110639_112376_+	AarF/ABC1/UbiB kinase family protein	NA	C7U092	Ostreococcus_tauri_virus	25.5	1.1e-33
QBE45598.1|112379_113195_+	YdcF family protein	NA	NA	NA	NA	NA
QBE45599.1|113246_113639_-	VOC family protein	NA	NA	NA	NA	NA
QBE45600.1|113746_114124_+	CrcB family protein	NA	NA	NA	NA	NA
QBE45601.1|114116_114455_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	34.2	5.5e-09
QBE45602.1|114470_116984_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	31.6	1.3e-131
>prophage 12
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	127108	128491	2041516		Pseudomonas_phage(100.0%)	1	NA	NA
QBE45610.1|127108_128491_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.0e-29
>prophage 13
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	131623	137482	2041516	transposase	Lactobacillus_phage(50.0%)	7	NA	NA
QBE45614.1|131623_132106_+	nucleoside 2-deoxyribosyltransferase	NA	A0A0A7DMT2	Lactobacillus_phage	65.6	6.3e-59
QBE45615.1|132150_132987_-	HAD family phosphatase	NA	NA	NA	NA	NA
QBE45616.1|133007_133370_-	LapA family protein	NA	NA	NA	NA	NA
QBE45617.1|133755_134106_-	recombinase XerC	NA	E9LUK6	Lactobacillus_phage	68.1	8.4e-37
QBE45618.1|134636_134819_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45619.1|135857_136316_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	1.9e-17
QBE45620.1|136543_137482_-	alpha/beta hydrolase	NA	A0A088FQA2	Mycobacterium_phage	28.1	9.2e-14
>prophage 14
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	150149	151229	2041516		Gordonia_phage(100.0%)	1	NA	NA
QBE45636.1|150149_151229_+	tyrosine recombinase XerS	NA	A0A0E3XA96	Gordonia_phage	29.6	6.9e-05
>prophage 15
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	154255	162034	2041516	integrase,transposase	Bacillus_phage(33.33%)	6	149666:149680	154940:154954
149666:149680	attL	TATTAGGAAAATGAC	NA	NA	NA	NA
QBE45638.1|154255_154903_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	30.7	2.5e-18
QBE45639.1|155011_155902_+	DMT family transporter	NA	NA	NA	NA	NA
154940:154954	attR	GTCATTTTCCTAATA	NA	NA	NA	NA
QBE45640.1|156085_157696_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	39.3	1.0e-97
QBE45641.1|159221_159911_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
QBE45642.1|159903_160482_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
QBE45643.1|160474_162034_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	37.1	7.1e-19
>prophage 16
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	177483	178260	2041516		Bacillus_virus(100.0%)	1	NA	NA
QBE45661.1|177483_178260_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.2	1.1e-15
>prophage 17
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	181758	183141	2041516		Pseudomonas_phage(100.0%)	1	NA	NA
QBE45664.1|181758_183141_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.0	7.9e-30
>prophage 18
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	191244	245444	2041516	transposase	Lactococcus_phage(33.33%)	41	NA	NA
QBE45665.1|191244_191703_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE45666.1|191955_192915_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45667.1|192930_193362_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45668.1|195106_195295_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45669.1|195284_195641_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBE45670.1|195711_197256_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	24.2	1.4e-22
QBE45671.1|197402_199292_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45672.1|199292_199598_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45673.1|199877_200687_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
QBE45674.1|200679_201498_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
QBE45675.1|201494_202142_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
QBE45676.1|202217_203477_-	chloride channel protein	NA	NA	NA	NA	NA
QBE45677.1|203634_205941_-	DUF4968 domain-containing protein	NA	NA	NA	NA	NA
QBE45678.1|206085_206727_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
QBE45679.1|206899_207088_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45680.1|207077_207434_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBE45681.1|207500_209030_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
QBE45682.1|214723_215212_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47380.1|215242_216250_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45683.1|216436_216718_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45684.1|216832_217669_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
QBE45685.1|217826_218537_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
QBE47381.1|218533_219094_-	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	28.8	7.7e-08
QBE45686.1|219095_219509_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBE45687.1|219618_221877_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
QBE45688.1|222064_222760_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45689.1|223399_226501_-	SMC family ATPase	NA	NA	NA	NA	NA
QBE45690.1|226502_227621_-	exonuclease SbcCD subunit D	NA	A0A143FIT9	Bacillus_phage	25.7	7.1e-05
QBE45691.1|227968_228745_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
QBE45692.1|232391_234284_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45693.1|234593_235385_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
QBE45694.1|235405_236206_-	XRE family transcriptional regulator	NA	A8ATJ9	Listeria_phage	32.7	8.7e-05
QBE45695.1|236399_236657_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45696.1|236735_238139_-	amino acid permease	NA	NA	NA	NA	NA
QBE45697.1|238131_239064_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
QBE45698.1|239508_239934_-	hypothetical protein	NA	A0A2D1GPE1	Lactobacillus_phage	37.7	3.4e-16
QBE45699.1|240225_241194_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
QBE45700.1|241195_242113_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45701.1|242201_242960_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	48.2	8.7e-63
QBE45702.1|242964_244176_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	45.7	2.1e-90
QBE45703.1|244352_245444_-	ATP-dependent helicase	NA	A0A1V0SG90	Hokovirus	21.7	2.4e-05
>prophage 19
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	253395	254241	2041516		Escherichia_phage(100.0%)	1	NA	NA
QBE45707.1|253395_254241_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.7	4.2e-34
>prophage 20
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	258133	339219	2041516	portal,integrase,terminase,tail,capsid,transposase,tRNA,head,protease	Lactobacillus_phage(53.66%)	97	331918:331933	341928:341943
QBE45711.1|258133_259309_-|transposase	transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	55.4	7.8e-119
QBE47383.1|259308_259707_-|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	62.1	4.3e-45
QBE45712.1|259822_260065_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45713.1|260257_260833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBE45714.1|260842_261079_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45715.1|261120_261633_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45716.1|261679_263182_-	glycerol kinase	NA	NA	NA	NA	NA
QBE45717.1|263316_263502_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
QBE45718.1|263584_265414_-	potassium transporter	NA	NA	NA	NA	NA
QBE45719.1|265552_266956_+	C69 family dipeptidase	NA	NA	NA	NA	NA
QBE45720.1|267107_267821_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	36.6	1.5e-27
QBE45721.1|267817_268669_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	24.5	3.4e-15
QBE45722.1|269206_270874_-	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	41.7	8.0e-53
QBE45723.1|270887_271451_-	peroxiredoxin	NA	NA	NA	NA	NA
QBE45724.1|271551_272433_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
QBE45725.1|272444_273107_-	serine dehydratase	NA	NA	NA	NA	NA
QBE45726.1|273178_273406_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45727.1|273405_273870_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45728.1|274238_274508_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
QBE45729.1|274653_275532_-	metallophosphoesterase	NA	NA	NA	NA	NA
QBE45730.1|275650_276886_+	MFS transporter	NA	NA	NA	NA	NA
QBE45731.1|276906_277608_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
QBE45732.1|278032_279172_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	45.5	3.2e-85
QBE45733.1|279189_279933_+	cyclase family protein	NA	NA	NA	NA	NA
QBE45734.1|279994_280894_-	prenyltransferase	NA	NA	NA	NA	NA
QBE45735.1|280974_281955_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
QBE45736.1|282001_284020_-	beta-galactosidase	NA	NA	NA	NA	NA
QBE45737.1|284029_285952_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QBE45738.1|286112_287135_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBE45739.1|287300_287780_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45740.1|287863_289246_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.0e-29
QBE45741.1|289741_290569_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	63.0	1.4e-98
QBE45742.1|290571_290904_-	DNA-binding protein	NA	M5AWB2	Nitratiruptor_phage	40.2	3.2e-14
QBE45743.1|291053_291278_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45744.1|291740_292199_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE45745.1|293435_294635_-	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	63.3	2.4e-51
QBE45746.1|294624_294996_-	hypothetical protein	NA	A0A2H4PBB2	Lactobacillus_phage	47.3	1.6e-09
QBE45747.1|294992_295319_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45748.1|295333_296422_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45749.1|296460_297012_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45750.1|297050_297170_-	XkdX family protein	NA	NA	NA	NA	NA
QBE45751.1|297162_297567_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45752.1|297578_298694_-	DUF2479 domain-containing protein	NA	E9LUJ9	Lactobacillus_phage	37.2	5.2e-56
QBE45753.1|298690_299836_-	SGNH/GDSL hydrolase family protein	NA	E9LUJ8	Lactobacillus_phage	42.4	7.4e-82
QBE45754.1|299848_300118_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45755.1|300160_300403_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45756.1|300395_304475_-	chromosome partitioning protein ParA	NA	E9LUJ5	Lactobacillus_phage	26.6	6.8e-29
QBE45757.1|304422_306174_-	hydrolase Nlp/P60	NA	NA	NA	NA	NA
QBE45758.1|306181_307027_-|tail	phage tail family protein	tail	E9LUJ3	Lactobacillus_phage	35.6	2.0e-36
QBE45759.1|307041_310881_-	lytic transglycosylase	NA	A0A0M9JJ59	Lactobacillus_phage	34.5	3.8e-114
QBE45760.1|311097_311496_-	hypothetical protein	NA	A0A2P0ZL35	Lactobacillus_phage	34.7	5.1e-06
QBE45761.1|311545_312256_-|tail	phage tail protein	tail	A0A0M7RF39	Lactobacillus_phage	52.1	1.3e-55
QBE45762.1|312260_312644_-	DUF806 family protein	NA	A0A2P0ZLF4	Lactobacillus_phage	37.7	8.9e-16
QBE45763.1|312640_313066_-	HK97 gp10 family phage protein	NA	A0A0M7RDL2	Lactobacillus_phage	49.0	6.6e-28
QBE45764.1|313058_313409_-|head,tail	head-tail adaptor protein	head,tail	Q6J1Y0	Lactobacillus_phage	35.4	4.1e-07
QBE45765.1|313377_313746_-|head,tail	phage gp6-like head-tail connector protein	head,tail	F8HGT2	Streptococcus_phage	48.4	5.9e-17
QBE45766.1|313765_314950_-|capsid	phage major capsid protein	capsid	Q9T1F6	Lactobacillus_phage	57.5	1.4e-120
QBE45767.1|314930_315665_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	54.5	8.1e-58
QBE45768.1|315648_316839_-|portal	phage portal protein	portal	E9LUQ1	Lactobacillus_phage	58.2	1.4e-131
QBE45769.1|316856_317036_-	DUF1056 family protein	NA	NA	NA	NA	NA
QBE45770.1|317025_318915_-|terminase	terminase large subunit	terminase	E9LUP9	Lactobacillus_phage	63.5	1.9e-244
QBE45771.1|318938_319154_+	hypothetical protein	NA	A0A0A7RTH9	Clostridium_phage	52.8	9.4e-07
QBE45772.1|319150_319588_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45773.1|319610_320087_-|terminase	phage terminase small subunit P27 family	terminase	A0A2P0VIH5	Streptococcus_phage	50.0	4.2e-39
QBE45774.1|320227_320764_-	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	53.7	3.7e-44
QBE45775.1|320831_321011_-	hypothetical protein	NA	F8J1H1	Lactobacillus_phage	50.0	2.7e-07
QBE45776.1|321365_321557_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45777.1|321670_322129_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE45778.1|322401_323244_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47384.1|323852_324083_-	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
QBE45779.1|324149_324572_-	transcriptional regulator	NA	NA	NA	NA	NA
QBE45780.1|324859_325171_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45781.1|325170_325431_-	hypothetical protein	NA	A0A2K9VD68	Lactobacillus_phage	37.8	1.3e-05
QBE45782.1|325438_325627_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45783.1|325626_325968_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45784.1|325967_326228_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45785.1|326227_326422_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45786.1|326802_327081_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45787.1|327156_327528_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45788.1|327524_327854_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45789.1|327846_328731_-	primosomal replication protein N	NA	Q8SDH3	Lactococcus_phage	43.3	5.4e-16
QBE47385.1|328708_329533_-	hypothetical protein	NA	E9LUM4	Lactobacillus_phage	64.5	1.1e-106
QBE45790.1|329516_330506_-	recombinase RecT	NA	E9LUM3	Lactobacillus_phage	46.4	7.3e-62
QBE45791.1|330498_330729_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45792.1|330764_330950_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45793.1|331002_331509_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45794.1|331788_332067_-	hypothetical protein	NA	NA	NA	NA	NA
331918:331933	attL	ATCTGGATAGTTTTCT	NA	NA	NA	NA
QBE45795.1|332078_332882_-	phage repressor protein/antirepressor Ant	NA	Q6SEF4	Lactobacillus_prophage	61.0	1.3e-77
QBE45796.1|332900_333104_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBE45797.1|333246_333720_+	XRE family transcriptional regulator	NA	Q0H244	Geobacillus_phage	44.1	2.7e-22
QBE45798.1|333732_334173_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0S2MV59	Bacillus_phage	37.6	1.6e-16
QBE45799.1|334301_334811_+	hypothetical protein	NA	Q6SEA6	Lactobacillus_prophage	70.3	7.7e-15
QBE45800.1|334973_335291_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45801.1|335293_336424_+|integrase	site-specific integrase	integrase	A0A1S5SA77	Streptococcus_phage	34.7	2.1e-49
QBE45802.1|336537_336897_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
QBE45803.1|337019_338450_-	amino acid permease	NA	NA	NA	NA	NA
QBE45804.1|338460_339219_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
341928:341943	attR	ATCTGGATAGTTTTCT	NA	NA	NA	NA
>prophage 21
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	347358	348060	2041516		Indivirus(100.0%)	1	NA	NA
QBE45812.1|347358_348060_-	ribonuclease III	NA	A0A1V0SDK0	Indivirus	35.3	4.0e-22
>prophage 22
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	356645	366193	2041516	tRNA	Acanthamoeba_castellanii_mimivirus(25.0%)	8	NA	NA
QBE45822.1|356645_358550_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1E1EXF7	Acanthamoeba_castellanii_mimivirus	30.7	5.6e-18
QBE45823.1|358553_359294_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
QBE45824.1|359301_360651_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
QBE45825.1|360640_361594_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.6	5.7e-11
QBE45826.1|361611_364041_-	primosomal protein N'	NA	NA	NA	NA	NA
QBE45827.1|364041_365247_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	34.2	1.4e-43
QBE45828.1|365357_365576_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
QBE45829.1|365572_366193_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	33.0	6.5e-24
>prophage 23
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	371132	373323	2041516		Indivirus(50.0%)	2	NA	NA
QBE45836.1|371132_372470_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	34.9	2.4e-39
QBE45837.1|372462_373323_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.3	5.6e-34
>prophage 24
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	385925	387431	2041516	tRNA	Tupanvirus(100.0%)	1	NA	NA
QBE45853.1|385925_387431_-|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L0I5	Tupanvirus	31.9	1.3e-09
>prophage 25
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	399976	405038	2041516	tRNA	Catovirus(33.33%)	4	NA	NA
QBE45867.1|399976_400633_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.1	2.7e-36
QBE45868.1|400745_401384_-	peptidoglycan endopeptidase	NA	M9MUG9	Rhodococcus_phage	33.3	3.6e-09
QBE45869.1|401567_403985_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
QBE45870.1|403991_405038_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	36.5	9.0e-26
>prophage 26
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	408525	408936	2041516		Caulobacter_phage(100.0%)	1	NA	NA
QBE45876.1|408525_408936_+	peptide deformylase	NA	A0A067XQZ3	Caulobacter_phage	39.8	2.7e-10
>prophage 27
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	412157	414332	2041516		Bacillus_phage(100.0%)	2	NA	NA
QBE45879.1|412157_413633_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.1	4.8e-25
QBE45880.1|413645_414332_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.0	2.3e-30
>prophage 28
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	421748	429446	2041516		Agrobacterium_phage(25.0%)	7	NA	NA
QBE45893.1|421748_422261_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	28.6	5.2e-11
QBE45894.1|422486_423428_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	33.9	5.0e-28
QBE45895.1|423448_424804_-	replication initiation and membrane attachment protein	NA	NA	NA	NA	NA
QBE45896.1|424821_425286_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
QBE45897.1|425331_425931_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
QBE45898.1|425934_426765_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	29.2	6.4e-27
QBE45899.1|426779_429446_-	DNA polymerase I	NA	F8WQ35	Bacillus_phage	35.0	2.8e-47
>prophage 29
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	433313	433634	2041516		Aeromonas_phage(100.0%)	1	NA	NA
QBE45904.1|433313_433634_-	thioredoxin	NA	J7KD15	Aeromonas_phage	35.8	2.0e-05
>prophage 30
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	437863	439246	2041516		Pseudomonas_phage(100.0%)	1	NA	NA
QBE45908.1|437863_439246_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.0e-29
>prophage 31
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	445500	446809	2041516		Staphylococcus_phage(50.0%)	2	NA	NA
QBE45913.1|445500_446238_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	1.0e-23
QBE45914.1|446374_446809_+	HIT family protein	NA	D7NW73	Streptomyces_phage	32.5	8.6e-07
>prophage 32
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	450767	456473	2041516	tRNA	Bacillus_phage(50.0%)	4	NA	NA
QBE45918.1|450767_451952_-	DNA repair exonuclease	NA	L0LAJ8	Bacillus_phage	25.4	7.6e-05
QBE45919.1|452031_452403_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45920.1|452451_454617_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
QBE45921.1|454784_456473_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.4	2.3e-71
>prophage 33
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	459500	463067	2041516		Pandoravirus(50.0%)	4	NA	NA
QBE45926.1|459500_460664_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	24.2	6.7e-06
QBE45927.1|460665_461253_-	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
QBE45928.1|461242_462502_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBE45929.1|462488_463067_-	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	41.8	2.2e-34
>prophage 34
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	469171	470885	2041516		Lactobacillus_virus(50.0%)	2	NA	NA
QBE45939.1|469171_469804_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	46.4	2.1e-46
QBE45940.1|469838_470885_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A249Y0X5	Enterococcus_phage	32.2	6.9e-10
>prophage 35
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	476020	562538	2041516	transposase,tRNA,protease	Enterococcus_phage(17.39%)	63	NA	NA
QBE45946.1|476020_478441_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	68.1	0.0e+00
QBE45947.1|478762_479950_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	67.7	3.6e-148
QBE45948.1|480110_480650_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
QBE45949.1|481072_482512_-	MFS transporter	NA	NA	NA	NA	NA
QBE45950.1|482635_483091_+	transcriptional repressor	NA	NA	NA	NA	NA
QBE45951.1|483122_484469_-	amino acid permease	NA	NA	NA	NA	NA
QBE45952.1|484559_485171_+	VanZ family protein	NA	NA	NA	NA	NA
QBE45953.1|485517_486042_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45954.1|486065_486509_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45955.1|486508_488011_-	LytTR family transcriptional regulator	NA	Q6DMX4	Streptococcus_phage	27.2	4.4e-34
QBE45956.1|488137_488569_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
QBE45957.1|488701_489550_+	aldo/keto reductase	NA	NA	NA	NA	NA
QBE45958.1|489647_490946_-	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
QBE45959.1|490938_492180_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
QBE45960.1|492475_493237_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	42.0	7.6e-51
QBE45961.1|493358_494066_-	LysM domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	46.4	9.3e-27
QBE45962.1|494394_496095_-	phosphoenolpyruvate carboxykinase	NA	NA	NA	NA	NA
QBE45963.1|496249_497011_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
QBE45964.1|497395_498289_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45965.1|498297_498876_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	59.7	3.6e-53
QBE45966.1|498941_501176_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	59.4	1.8e-249
QBE45967.1|501581_502979_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
QBE45968.1|503016_503571_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBE45969.1|510365_510614_-	DUF1797 family protein	NA	NA	NA	NA	NA
QBE45970.1|510671_511685_-	flippase-like domain-containing protein	NA	NA	NA	NA	NA
QBE47387.1|511684_512713_-	glycosyltransferase	NA	NA	NA	NA	NA
QBE45971.1|512715_513933_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
QBE45972.1|514166_515897_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	27.0	1.5e-14
QBE45973.1|515896_516163_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
QBE45974.1|516284_516470_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45975.1|516745_518950_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	41.1	3.3e-123
QBE45976.1|519000_519609_-	ECF transporter S component	NA	NA	NA	NA	NA
QBE45977.1|519758_520484_+	hypothetical protein	NA	NA	NA	NA	NA
QBE45978.1|520614_521301_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45979.1|521300_522167_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.6	1.4e-19
QBE45980.1|522144_522528_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBE45981.1|522691_523666_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45982.1|523599_525042_-	glycosyl hydrolase	NA	NA	NA	NA	NA
QBE45983.1|525607_526162_-	cell wall-binding protein	NA	NA	NA	NA	NA
QBE45984.1|526071_526431_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45985.1|526563_526782_-	hypothetical protein	NA	A0A1B1P773	Bacillus_phage	40.8	6.2e-06
QBE45986.1|526812_527193_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	37.8	1.2e-12
QBE45987.1|527219_528071_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	24.8	3.4e-15
QBE45988.1|530582_530930_-|transposase	transposase	transposase	NA	NA	NA	NA
QBE45989.1|530929_531574_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBE45990.1|532660_537127_-	dextransucrase	NA	NA	NA	NA	NA
QBE45991.1|537282_538164_-	hydrolase Nlp/P60	NA	A0A1J0GW44	Streptomyces_phage	44.3	6.6e-22
QBE45992.1|538314_539688_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.0	2.7e-30
QBE45993.1|540339_540798_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE45994.1|540970_542548_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	26.1	6.3e-31
QBE45995.1|542734_544201_+	transcriptional regulator	NA	NA	NA	NA	NA
QBE45996.1|544244_545813_-	hypothetical protein	NA	NA	NA	NA	NA
QBE45997.1|545796_546924_-	AI-2E family transporter	NA	NA	NA	NA	NA
QBE45998.1|548814_550059_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
QBE45999.1|551272_551872_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBE46000.1|552735_553473_-	AAA family ATPase	NA	A0A059NT77	Lactococcus_phage	45.8	3.0e-52
QBE46001.1|553474_554698_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	44.5	3.9e-89
QBE46002.1|555202_556177_-	glycosyltransferase	NA	NA	NA	NA	NA
QBE46003.1|556289_556859_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46004.1|556926_558243_-	hydrolase Nlp/P60	NA	A0A1W6DXV0	Rhodococcus_phage	44.7	4.4e-14
QBE46005.1|558468_560067_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B1P878	Bacillus_phage	35.8	1.7e-12
QBE46006.1|560392_560851_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE46007.1|561059_562538_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A249Y0X5	Enterococcus_phage	49.3	1.2e-31
>prophage 36
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	569485	572218	2041516		Streptococcus_phage(50.0%)	3	NA	NA
QBE46013.1|569485_570604_-	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	77.6	3.0e-168
QBE46014.1|570629_571277_-	sugar transferase	NA	NA	NA	NA	NA
QBE46015.1|571288_572218_-	glycosyltransferase	NA	V5USA4	Oenococcus_phage	49.7	3.3e-80
>prophage 37
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	582633	585268	2041516		Catovirus(50.0%)	2	NA	NA
QBE46027.1|582633_583755_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.2	1.6e-20
QBE46028.1|583966_585268_-	DEAD/DEAH box helicase	NA	A0A1B1IS59	uncultured_Mediterranean_phage	30.6	1.1e-41
>prophage 38
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	594673	609400	2041516		Bacillus_phage(14.29%)	13	NA	NA
QBE46041.1|594673_595597_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B1P878	Bacillus_phage	35.8	4.8e-15
QBE46042.1|597509_597968_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A167R6J9	Powai_lake_megavirus	38.4	1.3e-16
QBE46043.1|597982_598636_-	nitroreductase	NA	NA	NA	NA	NA
QBE46044.1|598719_599259_-	hydrophobic protein	NA	NA	NA	NA	NA
QBE46045.1|599329_599812_-	N-acetyltransferase	NA	E9LUK4	Lactobacillus_phage	43.8	3.5e-25
QBE46046.1|599956_601288_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	1.3e-29
QBE46047.1|601513_602695_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	28.9	1.8e-27
QBE47388.1|602860_603301_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46048.1|603824_604271_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46049.1|604340_604928_-	ATP-binding protein	NA	NA	NA	NA	NA
QBE46050.1|605110_607888_-	DEAD/DEAH box helicase	NA	A0A0P0YML3	Yellowstone_lake_phycodnavirus	28.2	3.2e-30
QBE46051.1|607943_608258_-	multidrug transporter	NA	NA	NA	NA	NA
QBE46052.1|608548_609400_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.3	8.3e-30
>prophage 39
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	617896	634056	2041516	integrase	Pseudomonas_phage(16.67%)	10	624451:624493	626528:626570
QBE46062.1|617896_619279_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.0	3.6e-30
QBE46063.1|619801_620296_-	cysteine hydrolase	NA	NA	NA	NA	NA
QBE46064.1|620521_623857_-	DUF4145 domain-containing protein	NA	A0A097BY72	Enterococcus_phage	25.3	1.0e-14
QBE46065.1|623840_624959_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
624451:624493	attL	ATCGGATCACCAAACATCTCGACAAATCGGGCTTTGATTAGTT	NA	NA	NA	NA
QBE46066.1|624984_625953_-|integrase	integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	28.5	7.2e-30
QBE46067.1|625998_627021_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
626528:626570	attR	ATCGGATCACCAAACATCTCGACAAATCGGGCTTTGATTAGTT	NA	NA	NA	NA
QBE46068.1|627062_628616_-	SAM-dependent DNA methyltransferase	NA	J7I0U9	Acinetobacter_phage	35.2	2.9e-36
QBE46069.1|629386_630595_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46070.1|631178_632621_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	53.5	1.5e-135
QBE46071.1|633042_634056_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.0	1.0e-18
>prophage 40
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	638553	645414	2041516		Ralstonia_phage(33.33%)	5	NA	NA
QBE46076.1|638553_640596_-	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	35.0	1.7e-100
QBE46077.1|640614_642888_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	43.2	7.2e-137
QBE46078.1|643044_644178_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
QBE46079.1|644194_644770_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
QBE46080.1|644787_645414_-	N-acetylmuramidase	NA	S5M633	Brevibacillus_phage	48.3	5.2e-29
>prophage 41
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	648996	650666	2041516		Planktothrix_phage(100.0%)	2	NA	NA
QBE46086.1|648996_649863_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.2	3.6e-20
QBE46087.1|649838_650666_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	34.3	9.6e-23
>prophage 42
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	666870	668958	2041516		Streptococcus_phage(100.0%)	1	NA	NA
QBE46117.1|666870_668958_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.6	1.5e-64
>prophage 43
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	672232	688134	2041516	transposase,protease	Phaeocystis_globosa_virus(16.67%)	9	NA	NA
QBE46122.1|672232_675868_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.7	2.1e-66
QBE46123.1|675911_679529_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	23.9	1.0e-52
QBE46124.1|679756_680359_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46125.1|680644_683137_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2C9CXH0	Yersinia_phage	39.6	1.5e-124
QBE46126.1|683151_683619_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46127.1|683792_684821_-	alcohol dehydrogenase AdhP	NA	A0A2K9L7I1	Tupanvirus	30.0	2.6e-30
QBE46128.1|685170_686037_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBE46129.1|686774_687416_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	51.4	2.7e-57
QBE46130.1|687675_688134_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
>prophage 44
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	692704	692905	2041516		Lactococcus_phage(100.0%)	1	NA	NA
QBE46136.1|692704_692905_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	73.8	2.1e-21
>prophage 45
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	697210	697951	2041516		Planktothrix_phage(100.0%)	1	NA	NA
QBE46142.1|697210_697951_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	4.1e-33
>prophage 46
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	718840	720235	2041516		Lactobacillus_phage(100.0%)	1	NA	NA
QBE46161.1|718840_720235_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	33.5	5.3e-58
>prophage 47
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	724882	725476	2041516		Catovirus(100.0%)	1	NA	NA
QBE46165.1|724882_725476_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	42.6	1.5e-25
>prophage 48
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	745870	746785	2041516		Streptococcus_phage(100.0%)	1	NA	NA
QBE46180.1|745870_746785_-	cysteine synthase family protein	NA	A0A1X9I5K7	Streptococcus_phage	41.8	1.2e-61
>prophage 49
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	760425	761181	2041516		Planktothrix_phage(100.0%)	1	NA	NA
QBE46192.1|760425_761181_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.9	2.5e-14
>prophage 50
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	778608	802201	2041516	integrase,transposase,protease	Streptococcus_phage(42.86%)	28	781343:781357	808999:809013
QBE46212.1|778608_779295_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
QBE46213.1|779318_779933_-	sugar permease	NA	NA	NA	NA	NA
QBE46214.1|780238_781294_-	Zn-dependent alcohol dehydrogenase	NA	K7Z7U2	Megavirus	23.0	8.5e-08
781343:781357	attL	GAAAAAGCTGATAAC	NA	NA	NA	NA
QBE46215.1|781612_782503_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.8	1.5e-29
QBE46216.1|782614_782761_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47390.1|782761_782944_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46217.1|783060_784455_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	39.5	1.8e-29
QBE46218.1|784669_785917_+|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	5.7e-11
QBE46219.1|785984_786227_-	cytochrome B5	NA	NA	NA	NA	NA
QBE46220.1|786318_786789_-	hypothetical protein	NA	A0A1S5SBP9	Streptococcus_phage	31.2	1.6e-11
QBE46221.1|786969_787257_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46222.1|787436_788024_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
QBE46223.1|788090_788207_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46224.1|788477_789689_+	putative hydroxymethylpyrimidine transporter CytX	NA	NA	NA	NA	NA
QBE46225.1|789762_790284_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBE46226.1|790499_790964_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46227.1|790976_792044_-	LysM domain-containing protein	NA	NA	NA	NA	NA
QBE46228.1|792136_793297_-	MFS transporter	NA	NA	NA	NA	NA
QBE46229.1|793315_793852_+	TIGR01440 family protein	NA	NA	NA	NA	NA
QBE46230.1|793875_794043_-	conjugal transfer protein TraV	NA	NA	NA	NA	NA
QBE46231.1|794043_794916_-	RNA methyltransferase	NA	NA	NA	NA	NA
QBE46232.1|794986_796225_-	MFS transporter	NA	NA	NA	NA	NA
QBE46233.1|796617_797835_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	28.0	2.7e-21
QBE46234.1|797812_798028_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
QBE46235.1|798029_798296_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46236.1|798295_800362_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46237.1|800328_801234_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46238.1|801718_802201_-|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	38.3	1.1e-05
808999:809013	attR	GTTATCAGCTTTTTC	NA	NA	NA	NA
>prophage 51
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	805772	817332	2041516	transposase	Streptococcus_phage(33.33%)	10	NA	NA
QBE46241.1|805772_806066_-	methylase	NA	Q6NE04	Leptospira_phage	53.8	1.3e-19
QBE46242.1|806160_806631_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46243.1|807765_809319_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.2	1.1e-19
QBE46244.1|809833_811024_+	ATP-binding protein	NA	NA	NA	NA	NA
QBE46245.1|811020_811944_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	1.4e-27
QBE46246.1|812134_814231_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	45.4	3.9e-153
QBE46247.1|814441_815311_+	DMT family transporter	NA	NA	NA	NA	NA
QBE46248.1|815350_815587_-	NADH oxidase	NA	NA	NA	NA	NA
QBE46249.1|815758_816934_-|transposase	transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	55.4	1.7e-118
QBE47391.1|816933_817332_-|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	62.9	3.9e-46
>prophage 52
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	823412	824426	2041516		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
QBE46256.1|823412_824426_-	D-2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	32.8	3.6e-40
>prophage 53
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	830465	831038	2041516		Pandoravirus(100.0%)	1	NA	NA
QBE46263.1|830465_831038_-	guanylate kinase	NA	S4VT50	Pandoravirus	39.7	1.6e-05
>prophage 54
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	837833	839731	2041516		Mycoplasma_phage(100.0%)	2	NA	NA
QBE46270.1|837833_838640_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	24.2	2.8e-11
QBE46271.1|838639_839731_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.1	1.5e-36
>prophage 55
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	843520	846794	2041516		Acanthocystis_turfacea_Chlorella_virus(50.0%)	2	NA	NA
QBE46274.1|843520_846184_+	HAD family hydrolase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	27.5	2.5e-64
QBE46275.1|846326_846794_+	DNA starvation/stationary phase protection protein	NA	A0A291I9P0	Lactobacillus_phage	30.7	5.4e-15
>prophage 56
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	851505	857730	2041516		Enterococcus_phage(33.33%)	6	NA	NA
QBE46280.1|851505_852504_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A249XZT7	Enterococcus_phage	28.2	2.0e-14
QBE46281.1|852668_853631_+	nucleoside hydrolase	NA	NA	NA	NA	NA
QBE46282.1|853922_854678_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.5	3.9e-23
QBE46283.1|854730_855516_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
QBE46284.1|855782_856343_+	ABC transporter permease	NA	NA	NA	NA	NA
QBE46285.1|856347_857730_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.9	2.2e-16
>prophage 57
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	862325	868483	2041516		Staphylococcus_phage(66.67%)	6	NA	NA
QBE46290.1|862325_862739_+	XRE family transcriptional regulator	NA	A0A0H4ITV7	Staphylococcus_phage	44.3	1.6e-07
QBE46291.1|862749_863607_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBE46292.1|863661_864648_-	alcohol dehydrogenase	NA	A0A2P1EIJ9	Megavirus	23.7	2.0e-06
QBE46293.1|864693_866106_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
QBE46294.1|866259_867429_+	MFS transporter	NA	NA	NA	NA	NA
QBE46295.1|867601_868483_+	XRE family transcriptional regulator	NA	A0A2H4PQG7	Staphylococcus_phage	27.1	2.5e-13
>prophage 58
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	872122	878257	2041516	transposase	Streptococcus_phage(66.67%)	5	NA	NA
QBE46301.1|872122_874051_+	TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein	NA	D0R0F5	Streptococcus_phage	30.9	1.6e-68
QBE46302.1|874117_875020_-	ROK family protein	NA	NA	NA	NA	NA
QBE46303.1|875045_876398_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
QBE46304.1|876482_876932_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	52.3	1.2e-32
QBE46305.1|877006_878257_+|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	37.2	3.1e-57
>prophage 59
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	886608	891341	2041516		Bacillus_phage(66.67%)	3	NA	NA
QBE46312.1|886608_888441_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.8	2.7e-54
QBE46313.1|888424_890167_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	1.8e-39
QBE46314.1|890336_891341_+	D-2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	34.8	1.2e-51
>prophage 60
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	902935	903739	2041516		Staphylococcus_phage(100.0%)	1	NA	NA
QBE46327.1|902935_903739_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.0	5.5e-15
>prophage 61
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	940269	940977	2041516		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
QBE46373.1|940269_940977_-	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	29.7	6.5e-28
>prophage 62
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	951661	954723	2041516		Cyanophage(50.0%)	2	NA	NA
QBE46385.1|951661_953143_+	glucose-6-phosphate dehydrogenase	NA	M4SP85	Cyanophage	36.7	1.3e-75
QBE46386.1|953286_954723_+	NADP-dependent phosphogluconate dehydrogenase	NA	E3SPS4	Prochlorococcus_phage	30.5	2.4e-29
>prophage 63
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	962135	963128	2041516		Enterobacteria_phage(100.0%)	1	NA	NA
QBE46393.1|962135_963128_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	23.9	4.1e-12
>prophage 64
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	971100	975529	2041516		Lactobacillus_phage(33.33%)	5	NA	NA
QBE46404.1|971100_971853_+	hypothetical protein	NA	A0A2H4PB74	Lactobacillus_phage	70.6	3.6e-93
QBE46405.1|972046_972889_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	33.1	6.5e-35
QBE46406.1|972968_973688_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBE46407.1|973680_974661_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
QBE46408.1|974773_975529_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.4e-27
>prophage 65
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	978530	979454	2041516		Streptococcus_phage(100.0%)	1	NA	NA
QBE46411.1|978530_979454_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.1	2.7e-111
>prophage 66
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	982501	988484	2041516		Bacillus_phage(40.0%)	6	NA	NA
QBE46414.1|982501_983005_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	47.4	6.2e-33
QBE46415.1|983010_983631_-	XRE family transcriptional regulator	NA	A0A0S2MVM8	Bacillus_phage	41.5	8.5e-08
QBE46416.1|983774_985679_-	M13 family peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	30.6	1.0e-72
QBE46417.1|985752_986046_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46418.1|986049_987342_-	peptidase	NA	A0A172JHT2	Bacillus_phage	25.8	9.1e-28
QBE46419.1|987338_988484_-	ATP-binding protein	NA	A0A097PAJ8	Delftia_phage	28.0	8.9e-11
>prophage 67
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	998079	1001111	2041516		Brevibacillus_phage(50.0%)	3	NA	NA
QBE46430.1|998079_998673_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	S5M633	Brevibacillus_phage	49.0	4.4e-30
QBE46431.1|998749_999529_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46432.1|999569_1001111_-	ABC-F family ATP-binding cassette domain-containing protein	NA	Q6DMX7	Streptococcus_phage	26.7	1.2e-37
>prophage 68
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1004344	1013006	2041516		Streptomyces_phage(20.0%)	10	NA	NA
QBE46438.1|1004344_1005337_+	peptidoglycan endopeptidase	NA	A0A1J0GW44	Streptomyces_phage	45.7	2.2e-13
QBE46439.1|1005711_1006707_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBE46440.1|1006703_1007603_+	ABC transporter permease	NA	NA	NA	NA	NA
QBE46441.1|1007595_1008360_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	29.7	2.3e-10
QBE46442.1|1008427_1008991_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46443.1|1009038_1009371_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46444.1|1009599_1010922_+	MATE family efflux transporter	NA	NA	NA	NA	NA
QBE46445.1|1010992_1011310_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	37.8	1.6e-18
QBE46446.1|1011311_1012067_-	DUF475 domain-containing protein	NA	S5MAL1	Bacillus_phage	41.8	2.4e-41
QBE46447.1|1012085_1013006_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	25.0	3.7e-07
>prophage 69
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1016050	1020658	2041516	tRNA	Enterobacteria_phage(50.0%)	3	NA	NA
QBE46450.1|1016050_1017379_+	purine permease	NA	Q9KX94	Enterobacteria_phage	30.8	2.7e-35
QBE46451.1|1017690_1019076_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA	NA
QBE46452.1|1019356_1020658_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	23.9	8.0e-16
>prophage 70
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1029245	1031375	2041516		Streptococcus_phage(100.0%)	1	NA	NA
QBE46459.1|1029245_1031375_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	45.6	4.8e-159
>prophage 71
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1041588	1053596	2041516		Planktothrix_phage(33.33%)	12	NA	NA
QBE46470.1|1041588_1042785_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	35.1	5.8e-53
QBE46471.1|1042786_1043407_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46472.1|1043631_1043817_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46473.1|1043949_1044894_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	26.8	2.0e-16
QBE46474.1|1045321_1047028_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	41.6	2.5e-25
QBE47394.1|1047195_1047510_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46475.1|1047614_1047851_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46476.1|1047954_1049937_-	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	40.7	1.4e-32
QBE46477.1|1050034_1050724_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.6	1.3e-33
QBE46478.1|1050741_1051800_-	ABC transporter permease	NA	NA	NA	NA	NA
QBE46479.1|1051810_1052323_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46480.1|1052585_1053596_-	alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	26.8	3.1e-07
>prophage 72
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1057030	1058836	2041516	tRNA	Tupanvirus(100.0%)	1	NA	NA
QBE46483.1|1057030_1058836_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	32.1	7.8e-86
>prophage 73
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1066152	1067289	2041516		uncultured_virus(100.0%)	1	NA	NA
QBE46489.1|1066152_1067289_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	46.3	1.9e-85
>prophage 74
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1073885	1087667	2041516	transposase,tRNA	Phaeocystis_globosa_virus(16.67%)	12	NA	NA
QBE46500.1|1073885_1075208_-	aminopeptidase	NA	R4TV59	Phaeocystis_globosa_virus	31.5	5.0e-66
QBE46501.1|1075415_1076057_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
QBE46502.1|1076202_1078734_+	M1 family peptidase	NA	A0A0P0IY26	Acinetobacter_phage	25.6	2.5e-66
QBE46503.1|1078899_1079517_+	folate family ECF transporter S component	NA	NA	NA	NA	NA
QBE46504.1|1079895_1080906_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	43.1	1.2e-64
QBE46505.1|1080925_1082224_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.7	2.1e-56
QBE46506.1|1082417_1083098_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBE47395.1|1083113_1084223_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	27.9	3.1e-08
QBE46507.1|1084473_1084971_+	ABC transporter permease	NA	NA	NA	NA	NA
QBE47396.1|1085008_1086292_+	glycosyltransferase	NA	NA	NA	NA	NA
QBE46508.1|1086278_1087106_+	EAL domain-containing protein	NA	NA	NA	NA	NA
QBE46509.1|1087208_1087667_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
>prophage 75
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1091727	1092606	2041516		Staphylococcus_phage(100.0%)	1	NA	NA
QBE46515.1|1091727_1092606_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	5.7e-50
>prophage 76
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1100932	1101802	2041516		Lactobacillus_phage(100.0%)	1	NA	NA
QBE46524.1|1100932_1101802_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	31.4	2.4e-08
>prophage 77
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1113778	1115123	2041516		uncultured_virus(50.0%)	2	NA	NA
QBE46539.1|1113778_1114315_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	25.5	1.3e-07
QBE47397.1|1114472_1115123_+	methyltransferase	NA	G3MA03	Bacillus_virus	41.1	3.5e-20
>prophage 78
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1121102	1121966	2041516		Klosneuvirus(100.0%)	1	NA	NA
QBE46546.1|1121102_1121966_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	29.4	9.3e-29
>prophage 79
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1126514	1128434	2041516		Mimivirus(100.0%)	1	NA	NA
QBE46551.1|1126514_1128434_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1X9VNR2	Mimivirus	28.9	5.7e-18
>prophage 80
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1136452	1150501	2041516		Bacillus_virus(33.33%)	12	NA	NA
QBE46558.1|1136452_1137595_+	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	31.2	1.1e-13
QBE46559.1|1137841_1138063_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
QBE46560.1|1138071_1139196_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
QBE47399.1|1139222_1141142_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.0	6.9e-141
QBE46561.1|1141184_1143689_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	37.2	7.2e-114
QBE46562.1|1143891_1144188_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
QBE46563.1|1144225_1144789_+	single-stranded DNA-binding protein	NA	A0A2D1GPB7	Lactobacillus_phage	71.1	1.3e-42
QBE46564.1|1144822_1145059_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
QBE46565.1|1145275_1147294_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
QBE46566.1|1147299_1147752_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
QBE46567.1|1147785_1149177_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.7	4.0e-122
QBE46568.1|1149298_1150501_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	31.6	1.7e-41
>prophage 81
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1153533	1163239	2041516		Bacillus_phage(50.0%)	8	NA	NA
QBE46573.1|1153533_1155255_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	44.6	1.9e-113
QBE46574.1|1155598_1156306_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	4.3e-40
QBE46575.1|1156319_1158185_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	34.7	5.5e-34
QBE46576.1|1158162_1159458_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46577.1|1159470_1160313_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46578.1|1160330_1161137_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.1	4.3e-36
QBE46579.1|1161238_1162513_+	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	29.6	2.8e-21
QBE46580.1|1162729_1163239_+	phosphatidylglycerophosphatase A	NA	A0A291I9Q0	Lactobacillus_phage	51.9	8.2e-41
>prophage 82
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1173589	1174288	2041516		Planktothrix_phage(100.0%)	1	NA	NA
QBE46591.1|1173589_1174288_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.5e-37
>prophage 83
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1179238	1184507	2041516	protease	Only_Syngen_Nebraska_virus(50.0%)	4	NA	NA
QBE46597.1|1179238_1180234_-	D-2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	29.9	3.9e-31
QBE46598.1|1180235_1181423_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
QBE46599.1|1181930_1182152_+	transcriptional regulator	NA	NA	NA	NA	NA
QBE46600.1|1182269_1184507_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.8	7.1e-121
>prophage 84
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1194430	1198609	2041516		Bacillus_phage(100.0%)	1	NA	NA
QBE46605.1|1194430_1198609_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.2	5.5e-18
>prophage 85
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1206738	1207404	2041516		Alteromonas_phage(100.0%)	1	NA	NA
QBE46613.1|1206738_1207404_+	response regulator transcription factor	NA	A0A1J0GWE0	Alteromonas_phage	25.2	1.0e-06
>prophage 86
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1211584	1213955	2041516	transposase	Lactococcus_phage(50.0%)	3	NA	NA
QBE46617.1|1211584_1212043_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE46618.1|1212241_1212970_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
QBE46619.1|1213088_1213955_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	45.0	3.6e-57
>prophage 87
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1218108	1224715	2041516	transposase	Staphylococcus_virus(25.0%)	7	NA	NA
QBE46623.1|1218108_1219083_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	67.2	3.5e-133
QBE46624.1|1219278_1220577_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	36.4	3.3e-70
QBE46625.1|1220687_1221473_+	DUF5011 domain-containing protein	NA	NA	NA	NA	NA
QBE47400.1|1221638_1222175_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
QBE46626.1|1222293_1222680_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46627.1|1222928_1224185_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	37.8	6.2e-58
QBE46628.1|1224259_1224715_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	53.8	5.1e-34
>prophage 88
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1244329	1250623	2041516		Lactobacillus_phage(50.0%)	6	NA	NA
QBE46643.1|1244329_1245736_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	36.2	2.2e-80
QBE46644.1|1245806_1245956_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46645.1|1245991_1246564_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	45.7	1.4e-41
QBE46646.1|1246563_1247814_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	45.5	8.4e-39
QBE46647.1|1247816_1248743_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
QBE46648.1|1249240_1250623_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.0e-29
>prophage 89
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1256301	1260086	2041516	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
QBE46650.1|1256301_1257609_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	6.0e-96
QBE46651.1|1257877_1259341_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
QBE46652.1|1259342_1260086_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	4.5e-32
>prophage 90
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1266797	1269420	2041516		Gordonia_phage(33.33%)	3	NA	NA
QBE46657.1|1266797_1267766_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHY8	Gordonia_phage	30.4	1.7e-10
QBE46658.1|1267778_1268549_+	ParA family protein	NA	Q8JL10	Natrialba_phage	31.9	9.8e-30
QBE46659.1|1268535_1269420_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	32.9	1.4e-16
>prophage 91
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1273776	1283755	2041516		Bacillus_phage(40.0%)	9	NA	NA
QBE46665.1|1273776_1275075_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	53.0	7.0e-121
QBE46666.1|1275095_1275806_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
QBE46667.1|1275915_1276848_+	sugar-binding transcriptional regulator	NA	NA	NA	NA	NA
QBE46668.1|1276931_1278074_+	guanosine monophosphate reductase	NA	A0A1V0SHK8	Klosneuvirus	33.1	1.0e-59
QBE46669.1|1278254_1278944_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.6	5.1e-38
QBE46670.1|1278975_1280121_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	30.7	1.8e-32
QBE46671.1|1280256_1281165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBE46672.1|1281167_1281512_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
QBE46673.1|1282825_1283755_+	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	36.9	6.5e-28
>prophage 92
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1292612	1306880	2041516		Prochlorococcus_phage(25.0%)	13	NA	NA
QBE46681.1|1292612_1294292_+	acetolactate synthase AlsS	NA	G8DDL3	Micromonas_pusilla_virus	22.7	2.7e-32
QBE46682.1|1294308_1295025_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
QBE46683.1|1295209_1295695_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.4	6.2e-22
QBE46684.1|1295657_1296812_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QBE46685.1|1296883_1298179_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	31.6	2.5e-17
QBE46686.1|1298402_1299122_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
QBE46687.1|1299122_1299371_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QBE46688.1|1299371_1300052_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QBE46689.1|1300055_1302284_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	42.0	1.8e-148
QBE46690.1|1302259_1303714_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.5	4.2e-58
QBE46691.1|1303718_1304756_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	39.9	7.2e-60
QBE46692.1|1304765_1305338_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	35.1	1.3e-26
QBE46693.1|1305341_1306880_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	45.8	6.4e-73
>prophage 93
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1310506	1311757	2041516	tRNA	Cronobacter_phage(100.0%)	1	NA	NA
QBE46697.1|1310506_1311757_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	41.3	3.9e-84
>prophage 94
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1323085	1326525	2041516		Bacillus_virus(66.67%)	3	NA	NA
QBE46703.1|1323085_1324519_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	42.4	7.0e-98
QBE47403.1|1324534_1325080_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	36.8	1.8e-25
QBE47404.1|1325526_1326525_+	ADP-ribosylglycohydrolase family protein	NA	A0A172WZB4	Catopsilia_pomona_nucleopolyhedrovirus	25.4	6.8e-07
>prophage 95
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1331062	1331803	2041516		Bacillus_phage(100.0%)	1	NA	NA
QBE46707.1|1331062_1331803_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	38.2	4.6e-08
>prophage 96
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1338839	1349216	2041516	protease	Staphylococcus_phage(25.0%)	9	NA	NA
QBE46715.1|1338839_1339793_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	23.3	5.5e-14
QBE46716.1|1339792_1340293_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
QBE46717.1|1340313_1343163_+	DUF3427 domain-containing protein	NA	A0A1E1GE76	Vibrio_phage	27.7	7.4e-22
QBE46718.1|1343224_1343512_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46719.1|1343638_1344994_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	52.5	2.2e-125
QBE46720.1|1345280_1345601_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46721.1|1345709_1346414_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46722.1|1346489_1347224_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
QBE46723.1|1347407_1349216_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.9	6.6e-69
>prophage 97
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1353791	1354562	2041516		Planktothrix_phage(100.0%)	1	NA	NA
QBE46729.1|1353791_1354562_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.0	2.5e-25
>prophage 98
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1359286	1368133	2041516		Planktothrix_phage(33.33%)	8	NA	NA
QBE46735.1|1359286_1360351_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.3	1.9e-23
QBE46736.1|1360363_1361215_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBE46737.1|1361735_1362668_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
QBE46738.1|1362814_1364011_+	tetracycline resistance MFS efflux pump	NA	A0A2H4UVM2	Bodo_saltans_virus	20.7	3.1e-06
QBE46739.1|1364092_1364386_-	FMN-binding protein	NA	NA	NA	NA	NA
QBE46740.1|1364397_1365039_-	endonuclease III	NA	NA	NA	NA	NA
QBE46741.1|1365336_1366809_+	amino acid permease	NA	NA	NA	NA	NA
QBE46742.1|1366762_1368133_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.6	2.7e-22
>prophage 99
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1372003	1373458	2041516		Anguillid_herpesvirus(50.0%)	2	NA	NA
QBE46745.1|1372003_1372447_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	45.2	2.9e-26
QBE46746.1|1372498_1373458_-	site-specific DNA-methyltransferase	NA	A0A0H3UZ66	Geobacillus_virus	28.2	2.5e-14
>prophage 100
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1378055	1382156	2041516	tRNA	Bacillus_phage(50.0%)	3	NA	NA
QBE46751.1|1378055_1378754_+	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	30.4	2.7e-18
QBE46752.1|1379202_1380051_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
QBE46753.1|1380128_1382156_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.6	1.1e-91
>prophage 101
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1386844	1457919	2041516	transposase,tRNA,protease	Pseudomonas_phage(14.29%)	62	NA	NA
QBE46760.1|1386844_1387516_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.2	3.3e-13
QBE46761.1|1387515_1388313_+	metal ABC transporter permease	NA	NA	NA	NA	NA
QBE46762.1|1388544_1389390_+	pur operon repressor	NA	NA	NA	NA	NA
QBE46763.1|1389393_1390761_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	36.6	5.4e-31
QBE46764.1|1390835_1391825_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.2	6.5e-42
QBE46765.1|1392000_1392738_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46766.1|1392816_1393638_-	sugar-phosphatase	NA	NA	NA	NA	NA
QBE46767.1|1393637_1395005_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	31.4	4.3e-28
QBE46768.1|1395006_1395831_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
QBE46769.1|1396028_1396439_+|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	62.6	5.2e-46
QBE46770.1|1396438_1397614_+|transposase	transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	55.2	6.6e-118
QBE46771.1|1397840_1398239_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
QBE46772.1|1398272_1398842_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
QBE46773.1|1399017_1400622_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.9	1.3e-148
QBE46774.1|1401134_1402517_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.4e-29
QBE46775.1|1402800_1404078_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
QBE46776.1|1404170_1404416_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
QBE46777.1|1404577_1405894_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QBE46778.1|1405877_1406768_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBE46779.1|1406817_1407522_+	class A sortase	NA	NA	NA	NA	NA
QBE46780.1|1407703_1407901_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46781.1|1407922_1408702_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
QBE46782.1|1408713_1409580_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
QBE46783.1|1409599_1410256_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
QBE46784.1|1410294_1410759_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
QBE46785.1|1410888_1411458_+	LemA family protein	NA	NA	NA	NA	NA
QBE46786.1|1411460_1412357_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
QBE46787.1|1412510_1413890_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
QBE46788.1|1413961_1415458_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	39.0	3.4e-71
QBE46789.1|1415538_1416375_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	32.4	6.5e-27
QBE46790.1|1416840_1417782_+	glutaminase	NA	NA	NA	NA	NA
QBE46791.1|1417927_1418386_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE46792.1|1419041_1420424_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.8	1.7e-27
QBE46793.1|1420507_1421797_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
QBE46794.1|1421789_1422029_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
QBE46795.1|1422048_1423266_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	29.3	4.1e-22
QBE46796.1|1423265_1424792_-	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	26.0	1.2e-39
QBE46797.1|1424813_1424954_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
QBE46798.1|1425284_1425647_+	holo-ACP synthase	NA	NA	NA	NA	NA
QBE46799.1|1425646_1426774_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.0	2.5e-29
QBE46800.1|1426792_1427167_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A291I9M9	Lactobacillus_phage	36.0	2.1e-09
QBE46801.1|1427357_1428734_+	cytosine permease	NA	NA	NA	NA	NA
QBE46802.1|1428724_1429963_+	cytosine deaminase	NA	NA	NA	NA	NA
QBE46803.1|1430347_1431139_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
QBE46804.1|1431247_1431895_-	CBS domain-containing protein	NA	NA	NA	NA	NA
QBE46805.1|1432091_1432652_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
QBE46806.1|1432670_1436210_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
QBE46807.1|1436206_1436479_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
QBE46808.1|1436579_1436936_+	septum formation initiator family protein	NA	NA	NA	NA	NA
QBE46809.1|1437119_1437614_+	RNA-binding protein S1	NA	NA	NA	NA	NA
QBE46810.1|1437615_1439010_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A0N7G7K4	Chrysochromulina_ericina_virus	27.1	2.8e-14
QBE46811.1|1439002_1439545_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	26.8	6.1e-10
QBE46812.1|1439778_1441887_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	H8ZJI5	Ostreococcus_tauri_virus	48.4	4.6e-106
QBE46813.1|1441977_1442898_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
QBE46814.1|1443005_1444007_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
QBE46815.1|1444027_1445554_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	41.9	3.4e-90
QBE46816.1|1445679_1446213_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46817.1|1452303_1452492_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46818.1|1452481_1452838_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBE47406.1|1452959_1454453_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
QBE46819.1|1455493_1456207_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46820.1|1456419_1457919_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.1	2.1e-68
>prophage 102
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1464738	1471922	2041516		Bacillus_virus(66.67%)	5	NA	NA
QBE46827.1|1464738_1466205_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.0	2.8e-110
QBE46828.1|1466217_1467045_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	55.4	7.2e-79
QBE47407.1|1467110_1469288_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
QBE46829.1|1469280_1469733_+	SprT family protein	NA	NA	NA	NA	NA
QBE46830.1|1470035_1471922_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	33.7	5.3e-93
>prophage 103
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1476718	1487649	2041516	tRNA	Pandoravirus(20.0%)	12	NA	NA
QBE46835.1|1476718_1477861_+	PLP-dependent transferase	NA	A0A0B5JD48	Pandoravirus	25.7	1.5e-18
QBE46836.1|1477887_1478589_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBE46837.1|1478594_1479344_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.5	9.3e-25
QBE46838.1|1479359_1480151_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBE46839.1|1480258_1481599_-	aminopeptidase	NA	R4TV59	Phaeocystis_globosa_virus	33.0	1.8e-71
QBE46840.1|1481627_1482311_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
QBE46841.1|1482322_1482637_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBE46842.1|1482757_1483294_+	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	50.3	3.9e-41
QBE46843.1|1483318_1484692_+	DNA repair protein RadA	NA	NA	NA	NA	NA
QBE46844.1|1484710_1485862_+	PIN/TRAM domain-containing protein	NA	NA	NA	NA	NA
QBE46845.1|1485899_1486238_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46846.1|1486236_1487649_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.6	7.3e-55
>prophage 104
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1494389	1495511	2041516		Klosneuvirus(100.0%)	1	NA	NA
QBE47408.1|1494389_1495511_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	28.8	2.1e-28
>prophage 105
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1502940	1513891	2041516		Streptococcus_phage(50.0%)	13	NA	NA
QBE46865.1|1502940_1503960_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	62.3	2.9e-114
QBE46866.1|1504074_1506246_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.2	1.4e-254
QBE46867.1|1506345_1506567_-	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	45.3	5.0e-11
QBE46868.1|1506824_1507337_+	nucleoside deaminase	NA	NA	NA	NA	NA
QBE46869.1|1507609_1509445_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.6	1.0e-56
QBE46870.1|1509465_1509774_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
QBE47409.1|1509780_1510380_+	recombination protein RecR	NA	NA	NA	NA	NA
QBE46871.1|1510384_1510633_+	DUF2508 family protein	NA	NA	NA	NA	NA
QBE46872.1|1510642_1511284_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	55.7	1.3e-56
QBE46873.1|1511303_1511627_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46874.1|1511641_1512655_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	32.8	1.1e-33
QBE46875.1|1512665_1513016_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	31.7	1.0e-05
QBE46876.1|1513024_1513891_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	53.3	1.2e-76
>prophage 106
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1519672	1526766	2041516	tRNA	Streptococcus_phage(50.0%)	6	NA	NA
QBE46881.1|1519672_1520668_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	39.4	3.7e-53
QBE46882.1|1522300_1523026_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
QBE46883.1|1523009_1523564_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
QBE46884.1|1523582_1524614_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	39.4	1.7e-61
QBE46885.1|1524730_1525504_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	37.3	2.1e-32
QBE46886.1|1525521_1526766_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.3	4.0e-105
>prophage 107
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1531192	1538008	2041516	transposase	Staphylococcus_virus(25.0%)	6	NA	NA
QBE46891.1|1531192_1532803_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	39.3	1.0e-97
QBE46892.1|1532946_1534884_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.4	1.7e-54
QBE46893.1|1535124_1535769_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
QBE46894.1|1535789_1535969_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46895.1|1536003_1536288_+	co-chaperone GroES	NA	A7KV50	Bacillus_phage	34.8	8.4e-11
QBE46896.1|1536379_1538008_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.2	9.6e-160
>prophage 108
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1544448	1546474	2041516		Streptococcus_phage(100.0%)	2	NA	NA
QBE46902.1|1544448_1545081_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	41.5	7.3e-39
QBE46903.1|1545142_1546474_+	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	37.8	7.0e-76
>prophage 109
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1555219	1556134	2041516		Bacillus_phage(100.0%)	1	NA	NA
QBE46912.1|1555219_1556134_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.4	7.5e-69
>prophage 110
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1559486	1560419	2041516		Bacillus_virus(100.0%)	1	NA	NA
QBE46916.1|1559486_1560419_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.1	2.6e-85
>prophage 111
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1563466	1565191	2041516		Streptococcus_phage(100.0%)	1	NA	NA
QBE46920.1|1563466_1565191_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	59.8	5.0e-199
>prophage 112
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1568625	1577521	2041516	protease	uncultured_Mediterranean_phage(25.0%)	5	NA	NA
QBE46924.1|1568625_1571490_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.9	4.0e-310
QBE47412.1|1571758_1573090_+	amino acid permease	NA	NA	NA	NA	NA
QBE46925.1|1573176_1574070_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.4	2.0e-10
QBE46926.1|1575089_1576031_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	38.4	1.2e-50
QBE46927.1|1576927_1577521_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	54.3	8.0e-56
>prophage 113
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1583090	1586194	2041516	transposase	Streptococcus_phage(50.0%)	2	NA	NA
QBE46931.1|1583090_1584413_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	69.9	8.9e-172
QBE46932.1|1584583_1586194_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	39.3	1.0e-97
>prophage 114
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1590611	1598117	2041516	tRNA	Lactococcus_phage(25.0%)	9	NA	NA
QBE46936.1|1590611_1593017_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	4.1e-90
QBE46937.1|1593034_1593508_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	54.8	4.0e-42
QBE46938.1|1593564_1594149_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46939.1|1594299_1594989_+	uracil-DNA glycosylase	NA	A0A0A8IL23	Epstein-Barr_virus	49.2	1.0e-41
QBE46940.1|1595049_1596024_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
QBE46941.1|1596143_1596602_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
QBE46942.1|1596601_1597111_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBE46943.1|1597143_1597566_-	hypothetical protein	NA	NA	NA	NA	NA
QBE46944.1|1597577_1598117_-	exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	26.4	2.8e-07
>prophage 115
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1605660	1615007	2041516		Bacillus_phage(40.0%)	8	NA	NA
QBE46952.1|1605660_1607481_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	Q76DQ7	Chlorella_virus	36.8	4.8e-91
QBE46953.1|1607741_1608053_+	hypothetical protein	NA	NA	NA	NA	NA
QBE46954.1|1608114_1609980_+	acetyltransferase	NA	C6ZR20	Salmonella_phage	27.8	1.7e-22
QBE46955.1|1609990_1610446_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBE46956.1|1610450_1611257_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QBE46957.1|1611579_1612191_+	LysM domain-containing protein	NA	A0A288TY55	Enterococcus_phage	54.1	6.6e-29
QBE46958.1|1612800_1613520_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.3	2.1e-34
QBE46959.1|1613519_1615007_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.9	8.8e-35
>prophage 116
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1619539	1619998	2041516	transposase	Lactococcus_phage(100.0%)	1	NA	NA
QBE46966.1|1619539_1619998_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	3.3e-17
>prophage 117
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1625820	1627758	2041516		uncultured_virus(100.0%)	1	NA	NA
QBE46974.1|1625820_1627758_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.1	3.2e-93
>prophage 118
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1631807	1633055	2041516	transposase	Burkholderia_virus(100.0%)	1	NA	NA
QBE46979.1|1631807_1633055_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	5.1e-12
>prophage 119
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1648796	1653718	2041516		Enterococcus_phage(25.0%)	5	NA	NA
QBE46996.1|1648796_1649372_+	thymidine kinase	NA	A0A249XZX5	Enterococcus_phage	52.4	1.3e-47
QBE46997.1|1649387_1650476_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	44.6	4.1e-05
QBE46998.1|1650468_1651335_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
QBE46999.1|1651340_1652369_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	39.8	6.9e-55
QBE47000.1|1652482_1653718_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.8	6.1e-98
>prophage 120
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1658450	1659722	2041516		Enterobacteria_phage(100.0%)	1	NA	NA
QBE47005.1|1658450_1659722_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.0	3.7e-66
>prophage 121
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1675975	1677400	2041516		Aichi_virus(100.0%)	1	NA	NA
QBE47024.1|1675975_1677400_+	sugar porter family MFS transporter	NA	O13311	Aichi_virus	30.3	2.9e-35
>prophage 122
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1681985	1697053	2041516	transposase	Staphylococcus_phage(14.29%)	14	NA	NA
QBE47029.1|1681985_1682828_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.6	9.6e-55
QBE47030.1|1682820_1683918_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBE47031.1|1684029_1684518_-	universal stress protein	NA	NA	NA	NA	NA
QBE47032.1|1684601_1684898_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47033.1|1685203_1686508_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	48.8	3.6e-101
QBE47034.1|1686511_1687000_-	DUF1694 domain-containing protein	NA	NA	NA	NA	NA
QBE47035.1|1687134_1687407_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47036.1|1687464_1687872_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
QBE47037.1|1687896_1688640_-	fructose permease	NA	NA	NA	NA	NA
QBE47038.1|1688883_1689642_+	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	31.0	5.7e-22
QBE47039.1|1689757_1691488_+	oxalyl-CoA decarboxylase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.4	7.6e-30
QBE47040.1|1692477_1692936_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE47041.1|1694087_1695470_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.8	1.0e-29
QBE47042.1|1695718_1697053_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	33.0	1.3e-48
>prophage 123
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1700107	1711772	2041516	tRNA	Pacmanvirus(25.0%)	7	NA	NA
QBE47045.1|1700107_1701256_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	31.7	1.5e-37
QBE47046.1|1701277_1702498_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
QBE47047.1|1702824_1705479_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.5	8.3e-153
QBE47048.1|1705861_1707280_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
QBE47049.1|1707280_1708297_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
QBE47050.1|1708303_1710034_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	26.2	1.9e-28
QBE47051.1|1710026_1711772_+	thiol reductant ABC exporter subunit CydC	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.5	1.4e-20
>prophage 124
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1718957	1719608	2041516		Planktothrix_phage(100.0%)	1	NA	NA
QBE47058.1|1718957_1719608_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	6.3e-30
>prophage 125
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1726443	1735777	2041516		Bacillus_phage(50.0%)	6	NA	NA
QBE47065.1|1726443_1727532_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.5	4.5e-121
QBE47066.1|1727755_1729309_+	ribonuclease Y	NA	NA	NA	NA	NA
QBE47067.1|1729470_1732116_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	25.6	2.9e-36
QBE47068.1|1732127_1734134_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.3	1.0e-65
QBE47069.1|1734146_1734746_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
QBE47070.1|1734760_1735777_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	32.8	3.9e-10
>prophage 126
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1740144	1749654	2041516	tRNA	Tupanvirus(25.0%)	10	NA	NA
QBE47074.1|1740144_1742799_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	32.5	5.0e-65
QBE47075.1|1743068_1743335_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
QBE47076.1|1743331_1743775_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
QBE47077.1|1743784_1744081_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
QBE47078.1|1744179_1744716_+	CvpA family protein	NA	NA	NA	NA	NA
QBE47079.1|1744717_1747093_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	45.2	6.6e-16
QBE47080.1|1747183_1747498_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	40.4	6.2e-15
QBE47081.1|1747552_1748134_-	DUF2507 domain-containing protein	NA	NA	NA	NA	NA
QBE47082.1|1748261_1749065_+	glutamate racemase	NA	NA	NA	NA	NA
QBE47083.1|1749066_1749654_+	XTP/dITP diphosphatase	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.9	2.1e-08
>prophage 127
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1763580	1764189	2041516		Enterococcus_phage(100.0%)	1	NA	NA
QBE47102.1|1763580_1764189_+	metallophosphatase	NA	A0A0E3XCF4	Enterococcus_phage	40.2	9.8e-33
>prophage 128
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1774376	1775624	2041516	transposase	Burkholderia_virus(100.0%)	1	NA	NA
QBE47107.1|1774376_1775624_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	5.1e-12
>prophage 129
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1794604	1796935	2041516		Mycobacterium_phage(100.0%)	1	NA	NA
QBE47124.1|1794604_1796935_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.7	1.6e-83
>prophage 130
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1811584	1814380	2041516	tRNA	Orpheovirus(100.0%)	1	NA	NA
QBE47140.1|1811584_1814380_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	25.9	5.6e-83
>prophage 131
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1820498	1824020	2041516		Virus_Rctr197k(50.0%)	2	NA	NA
QBE47150.1|1820498_1822976_+	ATP-dependent RecD-like DNA helicase	NA	A0A1P8DII4	Virus_Rctr197k	28.1	2.5e-50
QBE47151.1|1823045_1824020_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	34.0	8.6e-39
>prophage 132
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1836784	1843481	2041516		Streptococcus_phage(25.0%)	9	NA	NA
QBE47162.1|1836784_1837936_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.0	4.9e-41
QBE47163.1|1838291_1838675_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47164.1|1838664_1838964_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47165.1|1839133_1840534_+	peptidoglycan endopeptidase	NA	D2KRB9	Lactobacillus_phage	40.4	6.0e-09
QBE47166.1|1840686_1840890_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47167.1|1840962_1841910_-	YegS/Rv2252/BmrU family lipid kinase	NA	A0A1V0SBJ0	Catovirus	29.0	3.0e-12
QBE47168.1|1842043_1842256_-	DUF1447 family protein	NA	NA	NA	NA	NA
QBE47169.1|1842391_1842868_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47170.1|1842920_1843481_-	peptide deformylase	NA	A0A2I7S809	Vibrio_phage	40.3	1.7e-10
>prophage 133
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1847192	1848620	2041516		Erysipelothrix_phage(100.0%)	1	NA	NA
QBE47174.1|1847192_1848620_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.9	2.1e-46
>prophage 134
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1853940	1859050	2041516		uncultured_Mediterranean_phage(33.33%)	5	NA	NA
QBE47181.1|1853940_1854462_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	36.6	1.4e-24
QBE47182.1|1854445_1855498_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
QBE47183.1|1855591_1856224_+	competence protein ComEA	NA	NA	NA	NA	NA
QBE47184.1|1856287_1856773_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	59.2	4.9e-35
QBE47185.1|1856938_1859050_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	34.8	8.1e-34
>prophage 135
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1864093	1944597	2041516	integrase,transposase,terminase,tail,capsid,head,tRNA,portal,protease	Staphylococcus_phage(12.5%)	83	1897827:1897886	1939494:1940266
QBE47191.1|1864093_1865284_+	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	27.8	1.5e-32
QBE47192.1|1865479_1866790_+	trigger factor	NA	NA	NA	NA	NA
QBE47193.1|1866965_1868216_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	2.3e-137
QBE47194.1|1868233_1868824_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
QBE47195.1|1868825_1869125_+	nucleotide pyrophosphohydrolase	NA	A0A1S7FYY8	Listeria_phage	49.0	5.0e-22
QBE47196.1|1869449_1871261_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
QBE47197.1|1871325_1872642_+	GTPase ObgE	NA	NA	NA	NA	NA
QBE47198.1|1872674_1873604_+	ribonuclease Z	NA	NA	NA	NA	NA
QBE47199.1|1873621_1874455_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBE47200.1|1874594_1875062_+	single-stranded DNA exonuclease	NA	A7KV88	Bacillus_phage	43.3	4.1e-15
QBE47201.1|1875075_1875396_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47202.1|1875515_1875788_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47203.1|1875805_1876306_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47204.1|1876331_1877723_+	DNA primase	NA	A0A0M4RE09	Enterococcus_phage	31.5	4.7e-30
QBE47205.1|1878152_1878512_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
QBE47206.1|1878520_1878934_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47207.1|1878937_1879462_+	HNH endonuclease	NA	H0USW1	Bacillus_phage	32.7	1.8e-11
QBE47208.1|1879481_1879673_-|tail	phage tail protein	tail	NA	NA	NA	NA
QBE47209.1|1879808_1880273_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0MG04	Staphylococcus_phage	33.6	9.2e-15
QBE47210.1|1880272_1881982_+|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	38.5	9.9e-107
QBE47211.1|1881947_1882133_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47212.1|1882146_1883265_+|portal	phage portal protein	portal	A0A1D6Z2A2	Staphylococcus_phage	31.9	8.6e-43
QBE47213.1|1883200_1884763_+|capsid	phage major capsid protein	capsid	A0A1Q1PVX2	Staphylococcus_phage	35.0	9.5e-40
QBE47214.1|1884819_1885242_+	transcriptional regulator	NA	E3W8E2	Leuconostoc_phage	32.7	1.2e-08
QBE47215.1|1885257_1885536_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
QBE47216.1|1886563_1887232_+	RNase HI	NA	C1KFJ1	Lactobacillus_virus	33.9	1.2e-31
QBE47217.1|1887257_1888415_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
QBE47218.1|1888455_1889082_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	52.2	5.6e-15
QBE47219.1|1889210_1889462_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
QBE47220.1|1889535_1889763_+	YneF family protein	NA	NA	NA	NA	NA
QBE47221.1|1889806_1890445_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
QBE47222.1|1890539_1891295_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
QBE47223.1|1891284_1891575_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
QBE47224.1|1891576_1892569_+	D-2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	31.9	2.7e-40
QBE47225.1|1892731_1893520_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
QBE47226.1|1893618_1894494_+	elongation factor Ts	NA	NA	NA	NA	NA
QBE47227.1|1894575_1895298_+	UMP kinase	NA	NA	NA	NA	NA
QBE47228.1|1895302_1895866_+	ribosome recycling factor	NA	NA	NA	NA	NA
1897827:1897886	attL	ATTAATGTCTTTAGACCTAGTTGAGTGCGCGAGCAGAGCGAGTGCACGAAACAAAAAATC	NA	NA	NA	NA
QBE47229.1|1897992_1898451_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE47415.1|1898752_1899532_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.0	2.2e-21
QBE47230.1|1899551_1900337_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
QBE47231.1|1900359_1901634_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
QBE47232.1|1901662_1903396_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	22.0	1.1e-07
QBE47233.1|1903471_1907803_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	29.7	3.5e-15
QBE47416.1|1907921_1908410_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
QBE47234.1|1908430_1909618_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
QBE47235.1|1909646_1909949_+	YlxR family protein	NA	NA	NA	NA	NA
QBE47236.1|1909935_1910247_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47237.1|1910260_1912519_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.8	6.7e-18
QBE47238.1|1912538_1912898_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
QBE47239.1|1913095_1914001_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
QBE47240.1|1914013_1914961_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
QBE47241.1|1915021_1915393_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47242.1|1915513_1916566_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
QBE47243.1|1916578_1917151_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QBE47244.1|1917175_1919041_+	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	46.6	1.1e-135
QBE47245.1|1919169_1920321_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	27.1	1.3e-30
QBE47246.1|1920451_1922287_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	25.9	4.3e-23
QBE47247.1|1922437_1923598_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	43.6	8.0e-84
QBE47248.1|1923721_1924456_-	hypothetical protein	NA	U5U717	Lactobacillus_phage	38.0	1.1e-38
QBE47249.1|1924460_1924697_+	2-hydroxymuconic semialdehyde hydrolase	NA	U5U783	Lactobacillus_phage	53.4	1.8e-14
QBE47250.1|1924748_1925198_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47251.1|1925296_1925755_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47252.1|1925929_1926190_-	S24 family peptidase	NA	U3PIS7	Lactobacillus_phage	60.9	4.8e-13
QBE47417.1|1926217_1926379_-	hypothetical protein	NA	A0A2I6PDG6	Staphylococcus_phage	65.9	1.4e-10
QBE47253.1|1926799_1928215_+	C69 family dipeptidase	NA	NA	NA	NA	NA
QBE47254.1|1928287_1929364_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
QBE47255.1|1929597_1930557_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
QBE47256.1|1930663_1930843_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47257.1|1931006_1931345_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47258.1|1931422_1932382_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
QBE47259.1|1932382_1933123_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
QBE47260.1|1933201_1933537_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47261.1|1933555_1935793_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1V0SJX2	Klosneuvirus	41.7	1.1e-12
QBE47262.1|1935803_1936241_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
QBE47263.1|1936398_1937247_-	fructosamine kinase family protein	NA	NA	NA	NA	NA
QBE47264.1|1937628_1939431_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
QBE47265.1|1939659_1940118_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	37.0	3.9e-18
QBE47266.1|1940257_1941001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	2.3e-31
1939494:1940266	attR	ATTAATGTCTTTAGACCTAGTTGAGTGCGCGAGCAGAGCGAGTGCACGAAACAAAAAATCACCTGCTATGCGGGTGGGCGATAAAAATTATATAAAAAAGGCCTCTTTTGCCTTAAGATGTAGGTGTTCAAGCCAAAGTCAATAAGGGAAAAGAGGTTATATAAATATGGCTAATAAATTAAATAGCTTAGCCCATACGAAGTGGTTATGTAAGTATCACATCGTATTCATACCAAAGTATAGACGTAAAGCGATCTTCAATCAATACCGAAGAGACCTGAGAGATTATATTCGTTTGTTGTGCAAATATAAGGGAGTAGAAATAATTGAAGGTCATATGATGCCAGATCATGTGCACTTGTTAGTAAGTATTCCGCCGAAACTAAGTGTCTCGCAGTTTATGGGATACTTAAAAGGGAAAAGTGCATTAATGATGTTTGATCGACATGCAAACTTAAAATACAAATATGGGAACCGACATTTTTGGGCTGAAGGCTACTATGTGAGTACAGTTGGATTAAATGAATCCACGATAAAGAAGTATATCCGAGATCAAGAGAAACATGATATAGCAATGGATAAGCTAACAAGTGTGGAATATTCGGACCCTTTTAAGGGTAAGTGAGGTAGTATAAACACCGCTTAAAGCGGTGGCAAAGTAGTCAGAGCATTTTGGCTTGAGCAAAGCGAAAGCCAGCGCCTTGAGACGCCGGCTTTTATTATCGGCTTATAGCCGATGTGCAAACCACCCGTTTGACGGGTGGTTATGATTT	NA	NA	NA	NA
QBE47267.1|1940990_1942502_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
QBE47268.1|1942802_1942994_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
QBE47269.1|1943053_1943500_+	GatB/YqeY domain-containing protein	NA	A0A248SJP2	Salicola_phage	27.8	4.0e-07
QBE47270.1|1943619_1944597_+	choloylglycine hydrolase family protein	NA	A0A2K9L5Y5	Tupanvirus	26.5	7.6e-19
>prophage 136
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1949141	1950149	2041516		Pseudomonas_phage(100.0%)	1	NA	NA
QBE47275.1|1949141_1950149_+	PhoH family protein	NA	H6X2N1	Pseudomonas_phage	48.4	8.6e-50
>prophage 137
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1956183	1959193	2041516		Helicobacter_phage(50.0%)	2	NA	NA
QBE47282.1|1956183_1958049_+	DNA primase	NA	I6P4U6	Helicobacter_phage	34.2	4.6e-49
QBE47283.1|1958050_1959193_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	36.6	2.5e-37
>prophage 138
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1965411	1978246	2041516	integrase	Streptomyces_phage(25.0%)	11	1957858:1957875	1981969:1981986
1957858:1957875	attL	ATGCGGGCAATTGATGAT	NA	NA	NA	NA
QBE47290.1|1965411_1968759_+	DNA polymerase III subunit alpha	NA	R4TB75	Streptomyces_phage	33.2	2.6e-151
QBE47291.1|1968944_1970366_+	pyruvate kinase	NA	NA	NA	NA	NA
QBE47292.1|1970507_1971389_+	DNA-binding protein	NA	NA	NA	NA	NA
QBE47293.1|1971388_1972282_+|integrase	integrase	integrase	A0A0K2CP59	Brevibacillus_phage	24.6	1.5e-21
QBE47294.1|1972295_1972652_+	reductase	NA	NA	NA	NA	NA
QBE47295.1|1972644_1973436_+	segregation/condensation protein A	NA	NA	NA	NA	NA
QBE47296.1|1973398_1974004_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	28.5	2.1e-11
QBE47297.1|1974003_1974720_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
QBE47298.1|1975073_1975691_+	ECF transporter S component	NA	NA	NA	NA	NA
QBE47299.1|1975791_1976817_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47300.1|1976806_1978246_+	ATP-dependent DNA helicase RecQ	NA	F2NZ48	Diadromus_pulchellus_ascovirus	39.8	9.7e-63
1981969:1981986	attR	ATGCGGGCAATTGATGAT	NA	NA	NA	NA
>prophage 139
CP035790	Lactobacillus reuteri strain ATG-F4 chromosome, complete genome	2041516	1982738	2036829	2041516	transposase,terminase,tail,capsid,head,tRNA,portal	Lactobacillus_phage(28.0%)	69	NA	NA
QBE47305.1|1982738_1983014_+	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	68.5	2.6e-25
QBE47306.1|1983149_1984415_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBE47307.1|1984540_1985752_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	39.7	3.8e-36
QBE47308.1|1985753_1987664_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.4	1.4e-56
QBE47309.1|1987682_1988645_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	61.2	2.5e-115
QBE47310.1|1988660_1989149_+	dihydrofolate reductase	NA	A0A1B2IBQ4	Erwinia_phage	40.8	4.3e-23
QBE47311.1|1989137_1989782_-	hemolysin III family protein	NA	NA	NA	NA	NA
QBE47312.1|1989960_1990803_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	33.3	2.3e-16
QBE47313.1|1990895_1991822_+	GDSL family lipase	NA	NA	NA	NA	NA
QBE47314.1|1991824_1992427_+	DUF2140 family protein	NA	NA	NA	NA	NA
QBE47315.1|1992445_1992667_+	YozE family protein	NA	NA	NA	NA	NA
QBE47316.1|1992687_1993560_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
QBE47317.1|1993552_1994323_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	36.1	2.2e-21
QBE47318.1|1994373_1995249_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
QBE47319.1|1995370_1997491_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	36.7	1.4e-97
QBE47320.1|1997589_1998504_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
QBE47321.1|1998545_1999175_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
QBE47322.1|1999400_2001410_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.5	1.5e-125
QBE47323.1|2001428_2003894_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.2	2.1e-94
QBE47324.1|2003910_2004378_+	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	38.5	2.0e-17
QBE47325.1|2004486_2005422_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
QBE47326.1|2005454_2006423_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
QBE47327.1|2006616_2007021_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
QBE47328.1|2007497_2007677_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47329.1|2007704_2008199_+	N-acetyltransferase family protein	NA	NA	NA	NA	NA
QBE47330.1|2008353_2008737_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBE47331.1|2008754_2008946_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47332.1|2008960_2009506_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBE47333.1|2009685_2011215_-	gluconate kinase	NA	NA	NA	NA	NA
QBE47334.1|2011265_2012285_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBE47335.1|2012364_2013549_-	gluconate permease	NA	NA	NA	NA	NA
QBE47336.1|2013606_2014983_-	recombinase family protein	NA	D2KRD2	Lactobacillus_phage	53.3	3.0e-106
QBE47337.1|2015339_2016197_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47338.1|2016217_2016739_-	hypothetical protein	NA	NA	NA	NA	NA
QBE47339.1|2016752_2017157_-	hypothetical protein	NA	E9LUL0	Lactobacillus_phage	61.3	2.2e-17
QBE47340.1|2017210_2017615_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
QBE47341.1|2017631_2018006_-	XRE family transcriptional regulator	NA	A0A1B0Y2R0	Lactobacillus_phage	49.5	9.9e-20
QBE47342.1|2018127_2018343_+	XRE family transcriptional regulator	NA	A0A059T7X5	Listeria_phage	59.3	3.5e-09
QBE47343.1|2018361_2019135_+	phage repressor protein/antirepressor Ant	NA	B8R674	Lactobacillus_phage	71.2	6.3e-93
QBE47344.1|2019410_2019614_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47345.1|2019610_2019859_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBE47346.1|2019836_2020040_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47347.1|2020230_2020503_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBE47348.1|2020495_2021425_+	recombinase RecT	NA	E9LUM3	Lactobacillus_phage	52.8	1.2e-74
QBE47418.1|2021408_2022233_+	hypothetical protein	NA	E9LUM4	Lactobacillus_phage	64.5	1.8e-106
QBE47349.1|2022210_2023095_+	primosomal replication protein N	NA	Q8SDH3	Lactococcus_phage	43.3	5.4e-16
QBE47350.1|2023087_2023417_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47351.1|2023413_2023785_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47352.1|2023860_2024139_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47353.1|2024519_2024714_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47354.1|2024713_2024974_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47355.1|2024973_2025315_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47356.1|2025314_2025503_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47357.1|2025510_2025771_+	hypothetical protein	NA	A0A2K9VD68	Lactobacillus_phage	37.8	1.3e-05
QBE47358.1|2025770_2026082_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47359.1|2026369_2026792_+	transcriptional regulator	NA	NA	NA	NA	NA
QBE47419.1|2026858_2027089_+	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
QBE47360.1|2027739_2027946_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47361.1|2028003_2028702_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA	NA
QBE47362.1|2028701_2029127_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47363.1|2029140_2029920_+	nuclease	NA	A0A1B1P7B5	Bacillus_phage	39.5	1.3e-13
QBE47364.1|2029936_2030440_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47365.1|2030414_2031710_+|terminase	PBSX family phage terminase large subunit	terminase	H9A0U5	Staphylococcus_phage	54.7	5.9e-128
QBE47366.1|2031709_2033371_+|portal	phage portal protein	portal	D2IZF6	Enterococcus_phage	33.2	1.7e-63
QBE47367.1|2033370_2034321_+|head	phage head morphogenesis protein	head	NA	NA	NA	NA
QBE47368.1|2034331_2034577_+	hypothetical protein	NA	NA	NA	NA	NA
QBE47369.1|2034706_2035360_+	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
QBE47370.1|2035374_2036451_+|capsid	phage capsid protein	capsid	D7RWJ0	Brochothrix_phage	30.3	3.1e-37
QBE47371.1|2036463_2036829_+|head,tail	phage head-tail connector protein	head,tail	Q77K22	Lactococcus_phage	34.8	8.5e-08
