The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035777	Klebsiella pneumoniae strain R46 chromosome, complete genome	5117042	1006112	1015882	5117042		Enterobacteria_phage(85.71%)	12	NA	NA
QBD89794.1|1006112_1008446_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	81.6	0.0e+00
QBD89795.1|1008457_1008778_-	hypothetical protein	NA	NA	NA	NA	NA
QBD89796.1|1008774_1009002_-	hypothetical protein	NA	NA	NA	NA	NA
QBD89797.1|1008998_1009550_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	74.1	3.8e-36
QBD89798.1|1009546_1009813_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	2.9e-29
QBD89799.1|1010353_1011091_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	59.7	9.3e-70
QBD89800.1|1011087_1011333_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	54.3	3.0e-17
QBD89801.1|1011350_1011917_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	4.8e-58
QBD89802.1|1012535_1013129_+	hypothetical protein	NA	NA	NA	NA	NA
QBD89803.1|1013161_1013803_-	hypothetical protein	NA	NA	NA	NA	NA
QBD89804.1|1013804_1014662_-	HAD family hydrolase	NA	NA	NA	NA	NA
QBD89805.1|1014658_1015882_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	49.9	3.9e-105
>prophage 2
CP035777	Klebsiella pneumoniae strain R46 chromosome, complete genome	5117042	1465950	1472855	5117042		Planktothrix_phage(33.33%)	6	NA	NA
QBD90193.1|1465950_1466814_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
QBD90194.1|1466824_1467598_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
QBD93520.1|1467838_1468732_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	3.6e-15
QBD90195.1|1468977_1470339_-	U32 family peptidase	NA	Q6DW11	Phage_TP	94.8	1.8e-207
QBD90196.1|1470657_1471380_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
QBD90197.1|1471376_1472855_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
>prophage 3
CP035777	Klebsiella pneumoniae strain R46 chromosome, complete genome	5117042	1516633	1531895	5117042		Hokovirus(18.18%)	13	NA	NA
QBD90227.1|1516633_1518040_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.7	4.7e-38
QBD90228.1|1518281_1519697_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.0	1.4e-53
QBD90229.1|1519719_1521090_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	26.0	6.4e-32
QBD90230.1|1521246_1522311_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.0	3.4e-105
QBD90231.1|1522337_1523207_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	66.7	1.7e-110
QBD90232.1|1523238_1524129_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	3.7e-28
QBD90233.1|1524143_1524698_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.6	1.5e-51
QBD90234.1|1524878_1526045_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	54.7	5.3e-112
QBD90235.1|1526991_1527996_-	NAD-dependent epimerase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	29.5	1.8e-31
QBD90236.1|1527951_1528146_+	hypothetical protein	NA	NA	NA	NA	NA
QBD90237.1|1528508_1528793_+	hypothetical protein	NA	NA	NA	NA	NA
QBD90238.1|1529074_1530490_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.0	1.4e-53
QBD90239.1|1530512_1531895_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	25.8	4.2e-31
>prophage 4
CP035777	Klebsiella pneumoniae strain R46 chromosome, complete genome	5117042	2457532	2468419	5117042		Escherichia_phage(87.5%)	9	NA	NA
QBD91097.1|2457532_2460640_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.5	0.0e+00
QBD91098.1|2460694_2461960_+	MFS transporter	NA	NA	NA	NA	NA
QBD91099.1|2461990_2463079_-	chromosome segregation protein SMC	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
QBD91100.1|2463165_2463426_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	98.8	5.4e-41
QBD91101.1|2463723_2464584_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
QBD91102.1|2464604_2465366_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
QBD91103.1|2465626_2466529_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
QBD91104.1|2466540_2467806_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.3	5.1e-233
QBD91105.1|2467798_2468419_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 5
CP035777	Klebsiella pneumoniae strain R46 chromosome, complete genome	5117042	3129219	3138682	5117042	protease,tRNA	Brazilian_cedratvirus(16.67%)	8	NA	NA
QBD91703.1|3129219_3130941_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.2e-14
QBD91704.1|3130985_3131687_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBD91705.1|3132040_3132259_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBD91706.1|3132378_3134658_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
QBD91707.1|3134688_3135006_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
QBD91708.1|3135331_3135553_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
QBD91709.1|3135629_3137570_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	2.5e-37
QBD91710.1|3137566_3138682_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
>prophage 1
CP035776	Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence	270566	94014	103973	270566	transposase	Stx2-converting_phage(50.0%)	8	NA	NA
QBD88670.1|94014_97161_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	S5VTK5	Leptospira_phage	22.4	2.3e-61
QBD88671.1|97247_97688_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88672.1|98113_99685_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.9e-169
QBD88673.1|99704_100052_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
QBD88674.1|100051_100729_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
QBD88675.1|100690_102964_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.9	4.6e-83
QBD88676.1|103004_103202_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
QBD88677.1|103235_103973_-	peptidase	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	31.9	1.3e-10
>prophage 2
CP035776	Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence	270566	130948	194489	270566	integrase,transposase	uncultured_Caudovirales_phage(15.79%)	59	177107:177166	189619:190438
QBD88705.1|130948_132295_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
QBD88832.1|132454_133159_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
QBD88706.1|133435_134782_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
QBD88707.1|134830_135229_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBD88708.1|136790_136970_-	hypothetical protein	NA	NA	NA	NA	NA
QBD88709.1|137745_139023_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
QBD88710.1|139085_141083_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.9	4.1e-19
QBD88711.1|142689_143043_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.0	4.1e-23
QBD88712.1|143090_143453_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
QBD88713.1|143470_145222_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
QBD88714.1|145269_146559_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.5	2.1e-170
QBD88715.1|146571_146997_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.0	1.4e-49
QBD88833.1|147347_147962_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88716.1|148217_149183_-	DMT family transporter	NA	NA	NA	NA	NA
QBD88717.1|149179_149998_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.4e-29
QBD88718.1|150002_150665_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBD88719.1|150661_151333_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBD88720.1|151356_152205_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
QBD88721.1|152360_153314_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	24.7	2.2e-10
QBD88722.1|153400_154618_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
QBD88723.1|155251_155773_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
QBD88724.1|155769_156723_+	fec operon regulator FecR	NA	NA	NA	NA	NA
QBD88725.1|156809_159128_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA	NA
QBD88726.1|159172_160075_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
QBD88727.1|160071_161070_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA	NA
QBD88728.1|161066_162023_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA	NA
QBD88729.1|162023_162791_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	25.2	9.8e-14
QBD88834.1|162889_163183_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	96.9	2.7e-49
QBD88835.1|163513_163756_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBD88730.1|164134_165145_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
QBD88731.1|165167_165383_-	hypothetical protein	NA	NA	NA	NA	NA
QBD88732.1|165605_166688_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	96.1	4.4e-185
QBD88733.1|166809_169884_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	96.5	0.0e+00
QBD88734.1|169935_171189_+	MFS transporter	NA	NA	NA	NA	NA
QBD88735.1|173117_173510_+	cysteine hydrolase	NA	NA	NA	NA	NA
QBD88736.1|173647_174532_+	EamA family transporter	NA	NA	NA	NA	NA
QBD88737.1|174563_175763_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
QBD88738.1|175841_176519_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QBD88739.1|176550_176793_-	relaxase	NA	NA	NA	NA	NA
177107:177166	attL	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTG	NA	NA	NA	NA
QBD88740.1|177169_177874_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88741.1|178216_179446_+	macrolide efflux MFS transporter Mef(B)	NA	A0A1B0RXG2	Streptococcus_phage	39.0	2.1e-74
QBD88742.1|179591_180455_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	31.0	2.5e-05
QBD88743.1|180492_180738_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88744.1|181206_181998_+	sulfonamide-resistant dihydropteroate synthase Sul3	NA	A0A0B5J4J5	Pandoravirus	26.5	1.2e-14
QBD88745.1|182852_183038_-	hypothetical protein	NA	NA	NA	NA	NA
QBD88746.1|183177_183510_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA	NA
QBD88747.1|183679_184471_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
QBD88748.1|184563_185823_-	chloramphenicol efflux MFS transporter CmlA1	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
QBD88749.1|186084_186876_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
QBD88750.1|186881_187172_-	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
QBD88751.1|187283_187781_-	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
QBD88752.1|187925_188939_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QBD88836.1|188907_189492_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QBD88753.1|189681_190386_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88754.1|190507_191413_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
189619:190438	attR	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCC	NA	NA	NA	NA
QBD88755.1|191409_192648_+	MFS transporter	NA	NA	NA	NA	NA
QBD88756.1|192647_193232_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBD88757.1|193177_193534_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88758.1|193724_194489_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
>prophage 3
CP035776	Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence	270566	200498	229046	270566	transposase,bacteriocin	Escherichia_phage(45.45%)	34	NA	NA
QBD88767.1|200498_202040_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QBD88768.1|202444_203284_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QBD88769.1|203277_203625_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QBD88770.1|204105_204810_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88771.1|205565_206417_+	replication protein	NA	NA	NA	NA	NA
QBD88772.1|206724_207540_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	3.5e-09
QBD88773.1|207600_208404_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
QBD88837.1|208403_209240_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QBD88774.1|209300_210005_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88775.1|210155_210971_+	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
QBD88776.1|211034_211739_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88777.1|211971_212832_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
QBD88778.1|213200_213905_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88838.1|214126_214411_-|transposase	transposase	transposase	NA	NA	NA	NA
QBD88839.1|215467_216022_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
QBD88840.1|216152_216983_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
QBD88779.1|217120_217753_+	type B-3 chloramphenicol O-acetyltransferase CatB3	NA	A0A2R8FE91	Brazilian_cedratvirus	41.2	4.1e-26
QBD88780.1|218155_218860_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBD88781.1|218906_220211_-|transposase	transposase	transposase	NA	NA	NA	NA
QBD88782.1|220249_220957_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBD88783.1|220953_221190_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
QBD88784.1|221186_221549_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
QBD88785.1|221566_223261_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
QBD88841.1|223312_223735_-	organomercurial transporter MerC	NA	NA	NA	NA	NA
QBD88786.1|223770_224046_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
QBD88787.1|224059_224410_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
QBD88788.1|224481_224916_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
QBD88789.1|224949_225084_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88790.1|225381_225600_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88791.1|225774_225963_+	hypothetical protein	NA	NA	NA	NA	NA
QBD88842.1|227116_227194_-	RepA leader peptide Tap	NA	NA	NA	NA	NA
QBD88792.1|227409_227688_-	replication regulatory protein RepA	NA	NA	NA	NA	NA
QBD88843.1|228007_228559_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	33.1	6.2e-18
QBD88844.1|228788_229046_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
