assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004193935.1_ASM419393v1	CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1	858786-858880	1	CRISPRCasFinder	no	cas9,cas1,cas2,csn2	cas3,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	Type II-C,Type II-A,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTC	29	0	0	NA	NA	II-A	1	1	TypeII-C,TypeII-A,TypeII-B	cas3,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|CP031738.1_848280_848922_+,NA|35aa|down_3|CP031738.1_860692_860797_+	NA|452aa|up_9|CP031738.1_846801_848157_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|CP031738.1_848280_848922_+	NA	NA|377aa|up_7|CP031738.1_848984_850115_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|CP031738.1_850124_850877_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|CP031738.1_850876_851641_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|CP031738.1_851640_852273_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|CP031738.1_852717_856824_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|CP031738.1_856823_857693_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|CP031738.1_857689_858031_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|CP031738.1_858020_858683_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|60aa|down_0|CP031738.1_859017_859197_+	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate	NA|83aa|down_1|CP031738.1_859260_859509_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|378aa|down_2|CP031738.1_859554_860688_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|35aa|down_3|CP031738.1_860692_860797_+	NA	NA|611aa|down_4|CP031738.1_860856_862689_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|385aa|down_5|CP031738.1_862876_864031_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|146aa|down_6|CP031738.1_864216_864654_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_7|CP031738.1_864783_865803_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_8|CP031738.1_866009_866435_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_9|CP031738.1_866453_866945_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
GCA_004193935.1_ASM419393v1	CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	2	1045690-1045791	2	CRISPRCasFinder	no		cas3,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|CP031738.1_1053621_1054407_+	NA|83aa|up_9|CP031738.1_1033419_1033668_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|CP031738.1_1034031_1036350_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|CP031738.1_1036878_1038201_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|CP031738.1_1038320_1039556_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|CP031738.1_1039925_1040699_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|CP031738.1_1041068_1041905_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|CP031738.1_1041920_1042550_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|CP031738.1_1042559_1043201_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|CP031738.1_1043307_1043643_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|CP031738.1_1043824_1045639_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|CP031738.1_1045814_1046372_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|CP031738.1_1046589_1048092_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|CP031738.1_1048154_1049168_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|CP031738.1_1049247_1052358_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|CP031738.1_1052542_1052914_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|CP031738.1_1052913_1053612_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|CP031738.1_1053621_1054407_+	NA	NA|205aa|down_7|CP031738.1_1054539_1055154_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|CP031738.1_1055894_1056515_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|CP031738.1_1056771_1059036_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCA_004193935.1_ASM419393v1	CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	3	1276447-1276810	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas8c,cas5,cas3	cas3,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	32,31,31	2	3	1276479-1276511|1276544-1276578|1276544-1276578	CP031738.1_8260-8228|CP031738.1_543448-543482|CP031738.1_1203858-1203824	I-C:I-C:I-C	5,5,5	5	TypeI-C,TypeI-U?,TypeI-U	cas3,csm6,cas9,cas1,cas2,csn2,cas4,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|CP031738.1_1266372_1267608_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|CP031738.1_1267881_1268562_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|CP031738.1_1268703_1269177_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|CP031738.1_1269342_1270059_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|CP031738.1_1270081_1271161_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|CP031738.1_1271233_1272967_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|CP031738.1_1272963_1273704_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|CP031738.1_1273791_1274898_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|CP031738.1_1274940_1275564_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|CP031738.1_1275576_1276287_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|CP031738.1_1276958_1277252_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|CP031738.1_1277262_1278288_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|CP031738.1_1278284_1278959_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas8c|632aa|down_3|CP031738.1_1279810_1281706_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_4|CP031738.1_1281705_1282434_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_5|CP031738.1_1282566_1284975_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_6|CP031738.1_1285128_1287777_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_7|CP031738.1_1287778_1288342_-	pfam13238, AAA_18, AAA domain	NA|67aa|down_8|CP031738.1_1288338_1288539_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|132aa|down_9|CP031738.1_1288942_1289338_-	PRK07758, PRK07758, hypothetical protein; Provisional
