The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	36317	48630	1878827		Synechococcus_phage(28.57%)	8	NA	NA
QBC34117.1|36317_40043_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBC34118.1|40203_41658_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	8.3e-54
QBC34119.1|41685_42708_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	41.8	4.0e-63
QBC34120.1|42875_43430_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBC34121.1|43613_45161_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBC34122.1|45218_46343_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBC34123.1|46595_47861_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBC34124.1|48138_48630_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	7.2e-18
>prophage 2
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	342165	348200	1878827		Streptococcus_phage(100.0%)	8	NA	NA
QBC34391.1|342165_342801_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
QBC34392.1|342818_343694_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	1.0e-62
QBC34393.1|344357_344681_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBC34394.1|344685_345549_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
QBC34395.1|345575_345968_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34396.1|346014_346644_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBC34397.1|346942_347299_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.0	1.1e-39
QBC34398.1|347372_348200_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.5	2.9e-128
>prophage 3
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	514420	571700	1878827	head,tRNA,portal,capsid,holin,terminase,tail	Streptococcus_phage(56.67%)	70	NA	NA
QBC35831.1|514420_515545_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
QBC34555.1|515613_516711_+	peptide chain release factor 2	NA	NA	NA	NA	NA
QBC34556.1|516730_517423_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	35.6	1.0e-30
QBC34557.1|517406_518345_+	ABC transporter permease	NA	NA	NA	NA	NA
QBC34558.1|518653_519352_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	62.9	3.6e-79
QBC34559.1|519519_520284_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
QBC34560.1|523226_524420_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QBC34561.1|524440_525787_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	8.2e-56
QBC34562.1|526201_527092_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	2.3e-06
QBC34563.1|527088_528066_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	74.2	2.1e-138
QBC34564.1|528062_528974_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
QBC34565.1|529150_530566_-	recombinase family protein	NA	A5GZ62	Lactococcus_phage	47.2	1.4e-109
QBC34566.1|530716_531319_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	41.9	4.3e-33
QBC34567.1|531284_532034_-	helix-turn-helix domain-containing protein	NA	A0A097PBE5	Streptococcus_pyogenes_phage	63.8	4.5e-80
QBC34568.1|532420_532579_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
QBC34569.1|532677_533319_-	hypothetical protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
QBC34570.1|533411_533618_+	XRE family transcriptional regulator	NA	A0A1X9I5S3	Streptococcus_phage	64.7	1.1e-17
QBC34571.1|533659_533905_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	93.8	1.6e-34
QBC34572.1|533863_534073_-	hypothetical protein	NA	NA	NA	NA	NA
QBC34573.1|534235_534466_-	hypothetical protein	NA	NA	NA	NA	NA
QBC34574.1|534610_534796_+	XRE family transcriptional regulator	NA	J7KH19	Streptococcus_phage	68.9	3.5e-18
QBC34575.1|534868_535114_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34576.1|535260_535473_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34577.1|535460_535643_+	hypothetical protein	NA	A0A2P0ZLA4	Lactobacillus_phage	43.8	4.0e-06
QBC34578.1|535752_536064_+	hypothetical protein	NA	A0A1S5PRW6	Streptococcus_phage	48.5	8.0e-23
QBC34579.1|536050_536743_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	96.1	5.9e-127
QBC34580.1|536838_538074_+	DEAD/DEAH box helicase	NA	J7KK96	Streptococcus_phage	95.1	2.8e-228
QBC34581.1|538089_538548_+	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
QBC34582.1|538550_539363_+	hypothetical protein	NA	J7KH42	Streptococcus_phage	97.4	1.9e-153
QBC34583.1|539352_540828_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
QBC34584.1|541089_541503_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
QBC34585.1|541499_541820_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
QBC34586.1|541803_542160_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	87.3	7.7e-54
QBC34587.1|542284_542566_+	DUF1599 domain-containing protein	NA	J7KDH9	Streptococcus_phage	75.0	2.5e-31
QBC34588.1|542558_542744_+	hypothetical protein	NA	A3F626	Streptococcus_phage	94.7	1.7e-12
QBC34589.1|542740_543010_+	hypothetical protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
QBC34590.1|543019_543433_+	hypothetical protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
QBC34591.1|543429_543714_+	hypothetical protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
QBC34592.1|543717_544200_+	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
QBC34593.1|544165_544954_+	site-specific DNA-methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	5.7e-134
QBC34594.1|545001_545727_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	44.8	3.1e-25
QBC34595.1|545921_546218_+	hypothetical protein	NA	A0A097PAV3	Streptococcus_pyogenes_phage	98.5	1.4e-32
QBC34596.1|546169_546607_+	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	97.9	6.7e-76
QBC34597.1|547189_548119_+	hypothetical protein	NA	A0A126HAU2	Lactococcus_phage	71.8	3.7e-100
QBC34598.1|548245_548623_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBC34599.1|548674_548860_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBC34600.1|549095_549434_+	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
QBC34601.1|549604_550072_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
QBC34602.1|550074_550305_+	hypothetical protein	NA	NA	NA	NA	NA
QBC35832.1|550308_552063_+|terminase	terminase large subunit	terminase	J7KKD1	Streptococcus_phage	96.1	0.0e+00
QBC34603.1|552222_552447_+	hypothetical protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
QBC34604.1|552480_553701_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
QBC34605.1|554367_555555_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
QBC34606.1|555699_556002_+	DNA packaging protein, QLRG family	NA	J7KC36	Streptococcus_phage	88.8	1.3e-41
QBC34607.1|555998_556346_+|head,tail	head-tail adaptor protein	head,tail	J7KJ42	Streptococcus_phage	88.2	2.9e-50
QBC34608.1|556342_556720_+	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.8e-45
QBC34609.1|556716_557142_+	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
QBC34610.1|557157_557766_+|tail	phage tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
QBC34611.1|557818_558145_+	hypothetical protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
QBC34612.1|558354_562278_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
QBC34613.1|562277_562985_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	71.9	6.8e-94
QBC34614.1|562981_565126_+	peptidase	NA	Q938K1	Temperate_phage	94.7	0.0e+00
QBC34615.1|565122_566133_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
QBC34616.1|566145_568032_+	hyaluronidase	NA	Q938J9	Temperate_phage	84.7	3.1e-218
QBC34617.1|568043_568475_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
QBC34618.1|568477_569095_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
QBC34619.1|569104_569380_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
QBC34620.1|569376_569604_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
QBC34621.1|569719_570925_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	83.3	1.6e-204
QBC34622.1|570992_571700_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
>prophage 4
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	663130	673733	1878827		Streptococcus_phage(57.14%)	9	NA	NA
QBC34698.1|663130_665341_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.6	1.0e-265
QBC34699.1|665448_666612_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
QBC34700.1|666608_667295_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBC34701.1|667388_668555_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBC34702.1|668615_668957_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBC34703.1|669177_670530_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	5.9e-30
QBC34704.1|670617_671886_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBC34705.1|671915_672356_-	hypothetical protein	NA	NA	NA	NA	NA
QBC34706.1|672590_673733_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.5	7.7e-23
>prophage 5
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	765160	860688	1878827	head,tRNA,integrase,transposase,portal,capsid,terminase,tail	Streptococcus_phage(36.84%)	107	779459:779507	818966:819014
QBC34793.1|765160_766060_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
QBC34794.1|766132_767371_+	GTPase HflX	NA	NA	NA	NA	NA
QBC34795.1|767363_767999_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
QBC34796.1|768013_768943_+	ribonuclease Z	NA	NA	NA	NA	NA
QBC34797.1|768942_769707_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBC34798.1|769703_771914_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.2	3.9e-71
QBC34799.1|772064_772583_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
QBC34800.1|772663_773347_+	DnaD domain protein	NA	Q938N2	Temperate_phage	36.8	2.9e-09
QBC34801.1|773343_774000_+	endonuclease III	NA	NA	NA	NA	NA
QBC34802.1|774071_774758_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
QBC34803.1|774747_775536_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
QBC34804.1|775570_776677_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
QBC34805.1|776734_777604_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.2	2.7e-100
QBC34806.1|777603_778197_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
QBC34807.1|778440_779481_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.5e-68
779459:779507	attL	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
QBC34808.1|779574_780714_-|integrase	site-specific integrase	integrase	A1EAB7	Streptococcus_phage	56.3	3.4e-119
QBC34809.1|780849_781530_-	hypothetical protein	NA	A0A097PAS7	Streptococcus_pyogenes_phage	88.3	4.7e-76
QBC34810.1|781567_782323_-	helix-turn-helix domain-containing protein	NA	A0A097PBE5	Streptococcus_pyogenes_phage	64.5	2.2e-82
QBC34811.1|782482_782710_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	60.0	4.5e-15
QBC34812.1|782760_783486_+	oxidoreductase	NA	A0A141E1D3	Streptococcus_phage	72.4	1.8e-94
QBC34813.1|783517_783784_+	hypothetical protein	NA	A0A1S5SC19	Streptococcus_phage	66.3	1.1e-23
QBC34814.1|783718_784525_-	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	81.7	2.3e-122
QBC34815.1|784666_784903_-	hypothetical protein	NA	NA	NA	NA	NA
QBC34816.1|785045_785357_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	78.4	4.1e-43
QBC34817.1|785358_785544_+	hypothetical protein	NA	Q938N3	Temperate_phage	90.2	1.2e-21
QBC34818.1|785643_785883_+	transcriptional regulator	NA	A0A060QMU7	Streptococcus_phage	51.4	3.0e-14
QBC34819.1|786041_786428_+	DnaD domain protein	NA	Q938N2	Temperate_phage	47.3	1.1e-24
QBC34820.1|786408_786642_+	hypothetical protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
QBC34821.1|786638_786779_+	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
QBC34822.1|786787_786994_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34823.1|787049_787379_+	hypothetical protein	NA	J7KGX3	Streptococcus_phage	83.5	2.1e-45
QBC34824.1|787381_788173_+	phage recombination protein Bet	NA	A0A1S5SFP4	Streptococcus_phage	82.0	1.4e-119
QBC34825.1|788182_789211_+	DUF1351 domain-containing protein	NA	E8ZD61	Streptococcus_phage	65.6	7.2e-121
QBC34826.1|789406_789745_+	hypothetical protein	NA	M1PKX3	Streptococcus_phage	37.5	4.0e-12
QBC34827.1|789741_790254_+	hypothetical protein	NA	Q708P9	Streptococcus_phage	73.2	2.9e-62
QBC34828.1|790240_790435_+	hypothetical protein	NA	A3F626	Streptococcus_phage	86.5	9.7e-11
QBC34829.1|790729_791191_+	DUF1642 domain-containing protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	60.1	4.5e-46
QBC34830.1|791640_792081_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	98.6	4.2e-78
QBC34831.1|792208_792430_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34832.1|792395_793310_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34833.1|793328_793790_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34834.1|793817_794300_+|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
QBC34835.1|794277_795567_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.5e-184
QBC34836.1|795578_797081_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.6e-140
QBC34837.1|797061_798624_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	1.6e-47
QBC34838.1|798627_798813_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34839.1|799198_799465_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	72.7	1.7e-26
QBC34840.1|799608_800142_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	82.5	1.8e-14
QBC34841.1|800151_800532_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	36.3	6.4e-06
QBC34842.1|800534_801584_+|capsid	minor capsid protein E	capsid	B0YL60	Streptococcus_virus	56.9	2.6e-105
QBC34843.1|801595_801862_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34844.1|801873_802227_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	7.4e-25
QBC34845.1|802223_802532_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
QBC34846.1|802512_802878_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
QBC34847.1|802874_803264_+|capsid	phage capsid protein	capsid	Q38611	Lactococcus_phage	69.0	1.6e-44
QBC35840.1|803360_803927_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	53.3	5.7e-43
QBC34848.1|803986_804340_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBC34849.1|804381_804711_+	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
QBC34850.1|804725_808361_+|tail	phage tail protein	tail	U6E979	Streptococcus_phage	28.0	4.0e-04
QBC34851.1|808393_809173_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	55.6	9.2e-68
QBC34852.1|809169_811221_+	hypothetical protein	NA	A3F656	Streptococcus_phage	83.8	0.0e+00
QBC34853.1|811217_812339_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	73.3	1.9e-127
QBC34854.1|812351_814265_+	hyaluronidase	NA	Q938J9	Temperate_phage	61.3	2.7e-92
QBC34855.1|814278_814440_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34856.1|814442_815054_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	91.1	5.7e-81
QBC34857.1|815064_815361_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBC34858.1|815357_815543_+	hypothetical protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
QBC34859.1|815628_816918_+	lysin	NA	Q5MY96	Streptococcus_phage	92.7	2.6e-237
QBC35841.1|817191_817869_+	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	32.4	2.4e-27
QBC34860.1|817894_818605_+	exotoxin type H	NA	NA	NA	NA	NA
QBC34861.1|819208_819685_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
818966:819014	attR	AAACTCAAGAAGTGATTAAATAAAACATTAAAGAACCTTGTCATATCAA	NA	NA	NA	NA
QBC34862.1|819742_820924_+	AI-2E family transporter	NA	NA	NA	NA	NA
QBC34863.1|820913_822161_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBC34864.1|822219_823872_-	fibronectin/fibrinogen-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
QBC34865.1|824225_825224_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBC34866.1|825228_825393_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34867.1|825568_826438_+	ABC transporter permease	NA	NA	NA	NA	NA
QBC34868.1|826434_827193_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
QBC34869.1|827396_829058_+	ribonuclease J 2	NA	NA	NA	NA	NA
QBC34870.1|829190_829976_+	esterase family protein	NA	NA	NA	NA	NA
QBC34871.1|830005_830332_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34872.1|830377_832285_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	3.4e-55
QBC34873.1|832571_833540_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
QBC35842.1|833598_834597_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
QBC34874.1|834781_836191_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
QBC34875.1|836245_836485_-	hypothetical protein	NA	NA	NA	NA	NA
QBC34876.1|836517_838281_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.2e-33
QBC34877.1|838296_838524_-	hypothetical protein	NA	NA	NA	NA	NA
QBC34878.1|838954_841372_-	hyaluronate lyase	NA	NA	NA	NA	NA
QBC34879.1|841604_842594_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	23.9	4.1e-12
QBC34880.1|842702_843494_-	glutamine amidotransferase	NA	NA	NA	NA	NA
QBC34881.1|843493_844831_-	Mur ligase family protein	NA	NA	NA	NA	NA
QBC34882.1|844943_845795_+	TIGR00159 family protein	NA	NA	NA	NA	NA
QBC34883.1|845791_846748_+	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
QBC34884.1|846801_848157_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
QBC34885.1|848280_848922_+	hypothetical protein	NA	NA	NA	NA	NA
QBC34886.1|848984_850115_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
QBC34887.1|850124_850877_+	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA	NA
QBC34888.1|850876_851641_+	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
QBC34889.1|851640_852273_+	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
QBC34890.1|852717_856824_+	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA	NA
QBC34891.1|856823_857693_+	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBC34892.1|857689_858031_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBC34893.1|858020_858683_+	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA	NA
QBC35843.1|859017_859197_+	nucleoside-diphosphate kinase	NA	NA	NA	NA	NA
QBC34894.1|859260_859509_+	nucleoside-diphosphate kinase	NA	NA	NA	NA	NA
QBC34895.1|859554_860688_+|transposase	ISAs1 family transposase IS1548	transposase	NA	NA	NA	NA
>prophage 6
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	1170208	1185082	1878827	tail,holin	Temperate_phage(42.86%)	14	NA	NA
QBC35172.1|1170208_1171144_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
QBC35173.1|1171443_1173306_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.0	1.4e-90
QBC35174.1|1173837_1174020_-	Paratox	NA	A3F673	Streptococcus_phage	75.0	5.3e-19
QBC35175.1|1174132_1174915_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
QBC35176.1|1175162_1176287_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
QBC35177.1|1176422_1177640_-|holin	holin	holin	A0A1P8VVM5	Streptococcus_phage	60.1	1.4e-163
QBC35178.1|1177758_1177986_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
QBC35179.1|1177982_1178255_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	92.1	3.2e-36
QBC35180.1|1178264_1178882_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
QBC35181.1|1178884_1179316_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
QBC35182.1|1179327_1181214_-	hyaluronidase	NA	Q938J9	Temperate_phage	84.6	4.4e-217
QBC35183.1|1181226_1182237_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
QBC35184.1|1182233_1184378_-	peptidase	NA	Q938K1	Temperate_phage	94.7	0.0e+00
QBC35185.1|1184374_1185082_-|tail	phage tail protein	tail	Q938K2	Temperate_phage	71.9	6.8e-94
>prophage 7
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	1197844	1218369	1878827	integrase	Streptococcus_phage(69.23%)	30	1203456:1203470	1219648:1219662
QBC35187.1|1197844_1198198_-	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	2.4e-55
QBC35188.1|1198432_1198615_+	type II toxin-antitoxin system HicA family toxin	NA	D6PSW1	Lactobacillus_phage	44.4	5.7e-05
QBC35189.1|1201113_1201440_-	hypothetical protein	NA	A0A097PAV3	Streptococcus_pyogenes_phage	98.3	1.5e-27
QBC35190.1|1202351_1203140_-	site-specific DNA-methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	5.7e-134
QBC35191.1|1203105_1203588_-	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
1203456:1203470	attL	TGACATTGATTTTTT	NA	NA	NA	NA
QBC35192.1|1203591_1203876_-	hypothetical protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
QBC35193.1|1203872_1204286_-	hypothetical protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
QBC35194.1|1204295_1204565_-	hypothetical protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
QBC35195.1|1204561_1204747_-	hypothetical protein	NA	A3F626	Streptococcus_phage	94.7	1.7e-12
QBC35196.1|1204739_1205021_-	DUF1599 domain-containing protein	NA	J7KDH9	Streptococcus_phage	75.0	2.5e-31
QBC35197.1|1205145_1205502_-	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	87.3	7.7e-54
QBC35198.1|1205485_1205806_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
QBC35199.1|1205802_1206216_-	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
QBC35200.1|1206477_1207953_-	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
QBC35201.1|1207942_1208755_-	hypothetical protein	NA	J7KH42	Streptococcus_phage	97.4	1.9e-153
QBC35202.1|1208757_1209216_-	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
QBC35203.1|1209231_1210467_-	DEAD/DEAH box helicase	NA	J7KK96	Streptococcus_phage	95.1	2.8e-228
QBC35204.1|1210562_1211255_-	DNA-binding protein	NA	J7KC09	Streptococcus_phage	96.1	5.9e-127
QBC35205.1|1211241_1211553_-	hypothetical protein	NA	A0A1S5PRW6	Streptococcus_phage	48.5	8.0e-23
QBC35206.1|1211662_1211845_-	hypothetical protein	NA	A0A2P0ZLA4	Lactobacillus_phage	43.8	4.0e-06
QBC35207.1|1211832_1212045_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35208.1|1212191_1212437_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35209.1|1212701_1212914_-	XRE family transcriptional regulator	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
QBC35210.1|1213115_1213871_+	XRE family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
QBC35211.1|1213882_1214401_+	restriction endonuclease	NA	E8ZDN5	Streptococcus_phage	45.9	1.6e-31
QBC35212.1|1214524_1215667_+|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
QBC35213.1|1215755_1216031_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
QBC35214.1|1216129_1216717_-	DUF2140 family protein	NA	NA	NA	NA	NA
QBC35215.1|1216694_1217555_-	GDSL family lipase	NA	NA	NA	NA	NA
QBC35851.1|1217529_1218369_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
1219648:1219662	attR	AAAAAATCAATGTCA	NA	NA	NA	NA
>prophage 8
CP031738	Streptococcus pyogenes strain SP1336 chromosome, complete genome	1878827	1393069	1466179	1878827	terminase,tRNA,integrase,portal,capsid,head,tail	Streptococcus_phage(74.07%)	86	1421958:1421974	1462775:1462791
QBC35360.1|1393069_1395109_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
QBC35361.1|1395486_1396404_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
QBC35362.1|1396367_1396574_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35363.1|1396775_1397330_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35364.1|1397440_1398280_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.3	1.9e-50
QBC35365.1|1398401_1399550_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
QBC35366.1|1399667_1401299_-	Na/Pi cotransporter family protein	NA	A0A1B1ITU5	uncultured_Mediterranean_phage	38.8	2.7e-05
QBC35367.1|1401500_1402223_+	hypothetical protein	NA	NA	NA	NA	NA
QBC35368.1|1402351_1403194_-	DegV domain-containing protein	NA	A0A1X9I5J4	Streptococcus_phage	61.9	1.3e-91
QBC35369.1|1403486_1404044_+	TetR/AcrR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	60.3	4.2e-14
QBC35370.1|1404079_1404904_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QBC35856.1|1404905_1405511_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
QBC35371.1|1405719_1406697_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
QBC35372.1|1407195_1407612_-	galactose-6-phosphate isomerase	NA	NA	NA	NA	NA
QBC35373.1|1407626_1408052_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
QBC35374.1|1408130_1408307_+	transcriptional regulator	NA	NA	NA	NA	NA
QBC35857.1|1408309_1409758_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
QBC35375.1|1409786_1410092_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
QBC35376.1|1410084_1410558_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QBC35377.1|1410794_1411565_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	27.8	1.1e-20
QBC35378.1|1411591_1411702_-	copper-binding protein	NA	NA	NA	NA	NA
QBC35379.1|1411764_1411968_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
QBC35858.1|1411981_1414183_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.7	1.4e-113
QBC35380.1|1414212_1414647_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
QBC35381.1|1414818_1415808_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBC35382.1|1415938_1416295_-	ribosome-binding factor A	NA	NA	NA	NA	NA
QBC35383.1|1416494_1419356_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.2	4.5e-19
QBC35384.1|1419375_1419678_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
QBC35385.1|1419670_1419967_-	YlxR family protein	NA	NA	NA	NA	NA
QBC35386.1|1419982_1421140_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
QBC35859.1|1421314_1421791_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
1421958:1421974	attL	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
QBC35387.1|1422095_1422275_-	Paratox	NA	A3F673	Streptococcus_phage	83.1	5.6e-21
QBC35388.1|1422513_1423686_+	streptodornase	NA	A7J2B8	Streptococcus_phage	49.8	4.7e-76
QBC35389.1|1423801_1424998_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	82.2	6.1e-196
QBC35390.1|1425124_1425310_-	hypothetical protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
QBC35391.1|1425306_1425606_-	hypothetical protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
QBC35392.1|1425616_1426237_-	hypothetical protein	NA	A3F662	Streptococcus_phage	88.8	8.3e-80
QBC35393.1|1426239_1426401_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35394.1|1426409_1428317_-	hyaluronidase	NA	Q938J9	Temperate_phage	60.9	1.3e-134
QBC35395.1|1428327_1428963_-	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	67.6	2.2e-75
QBC35396.1|1428962_1430018_-	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	73.2	1.2e-126
QBC35397.1|1430014_1431997_-	peptidase	NA	A7J2A7	Streptococcus_phage	92.5	0.0e+00
QBC35398.1|1432006_1432849_-|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	99.6	8.5e-160
QBC35399.1|1432860_1437243_-|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	76.4	3.2e-226
QBC35400.1|1437257_1437491_-	hypothetical protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
QBC35401.1|1437565_1438021_-	hypothetical protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
QBC35402.1|1438074_1438674_-|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	98.9	4.1e-92
QBC35403.1|1438685_1439045_-	hypothetical protein	NA	A7J2A1	Streptococcus_phage	97.5	6.8e-58
QBC35404.1|1439048_1439393_-	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	99.1	6.1e-56
QBC35405.1|1439389_1439668_-	hypothetical protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
QBC35406.1|1439678_1440035_-	hypothetical protein	NA	A7J298	Streptococcus_phage	97.5	2.8e-56
QBC35407.1|1440046_1440934_-|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	99.7	3.6e-161
QBC35408.1|1440946_1441516_-	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	97.9	2.6e-80
QBC35409.1|1441671_1441938_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	88.6	1.7e-34
QBC35410.1|1441940_1442129_-	hypothetical protein	NA	A7J294	Streptococcus_phage	98.4	1.4e-22
QBC35411.1|1442159_1443605_-|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	92.9	3.4e-257
QBC35412.1|1443564_1445097_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	1.3e-286
QBC35413.1|1445112_1446390_-|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	97.6	1.3e-241
QBC35414.1|1446379_1446832_-|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBC35415.1|1446921_1447338_-	DUF722 domain-containing protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
QBC35416.1|1447334_1447526_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35417.1|1447515_1448367_-	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	71.9	1.5e-100
QBC35418.1|1448375_1448642_-	hypothetical protein	NA	A7J287	Streptococcus_phage	65.2	5.4e-20
QBC35419.1|1448806_1450129_-	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	98.4	1.9e-254
QBC35420.1|1450125_1450401_-	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	100.0	9.1e-47
QBC35421.1|1450787_1453172_-	DNA primase	NA	A7J282	Streptococcus_phage	94.4	5.3e-276
QBC35422.1|1453176_1455099_-	DNA polymerase	NA	A7J280	Streptococcus_phage	96.7	0.0e+00
QBC35423.1|1455141_1455699_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	2.5e-51
QBC35424.1|1455709_1456108_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35425.1|1456111_1457266_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	91.9	4.5e-204
QBC35426.1|1457265_1457565_-	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
QBC35427.1|1457652_1457856_-	hypothetical protein	NA	A7J276	Streptococcus_phage	95.5	2.3e-31
QBC35428.1|1458002_1458389_-	hypothetical protein	NA	A7J274	Streptococcus_phage	88.2	3.1e-56
QBC35429.1|1458385_1458589_-	hypothetical protein	NA	NA	NA	NA	NA
QBC35430.1|1458581_1458752_-	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	6.9e-21
QBC35431.1|1458748_1459024_-	DNA-binding protein	NA	A7J272	Streptococcus_phage	95.6	5.9e-46
QBC35432.1|1459085_1459301_-	transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	76.8	4.2e-23
QBC35433.1|1459348_1459762_+	hypothetical protein	NA	NA	NA	NA	NA
QBC35434.1|1460172_1460574_+	XRE family transcriptional regulator	NA	A7J269	Streptococcus_phage	72.9	1.1e-40
QBC35435.1|1460587_1460971_+	ImmA/IrrE family metallo-endopeptidase	NA	A7J268	Streptococcus_phage	99.2	5.3e-69
QBC35436.1|1460981_1461533_+	hypothetical protein	NA	A7J267	Streptococcus_phage	92.3	3.4e-85
QBC35437.1|1461649_1462729_+|integrase	site-specific integrase	integrase	A7J266	Streptococcus_phage	86.9	1.3e-176
QBC35438.1|1462926_1463562_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
1462775:1462791	attR	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
QBC35439.1|1463561_1464353_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
QBC35440.1|1464416_1465451_-	ABC transporter permease	NA	NA	NA	NA	NA
QBC35441.1|1465453_1466179_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
