assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	1	64124-64235	1	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Orphan	GCTTATCCGGTCTACAAAATCGCAGCG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA	NA|126aa|up_9|CP032513.1_50165_50543_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|CP032513.1_50545_51367_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|CP032513.1_51363_52353_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|CP032513.1_52352_53639_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|CP032513.1_53691_56046_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|CP032513.1_56300_57116_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|CP032513.1_57232_57892_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|CP032513.1_57903_60810_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|CP032513.1_60973_63325_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|CP032513.1_63399_64095_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|CP032513.1_64294_65797_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|293aa|down_1|CP032513.1_67782_68661_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_2|CP032513.1_68746_69511_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_3|CP032513.1_69624_70323_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_4|CP032513.1_70306_71917_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_5|CP032513.1_71892_72876_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_6|CP032513.1_73039_74695_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_7|CP032513.1_74783_74915_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|202aa|down_8|CP032513.1_77020_77626_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|467aa|down_9|CP032513.1_77636_79037_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	2	864055-864203	2	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA|125aa|up_8|CP032513.1_853327_853702_+,NA	NA|300aa|up_9|CP032513.1_852299_853199_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|125aa|up_8|CP032513.1_853327_853702_+	NA	NA|232aa|up_7|CP032513.1_853655_854351_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|CP032513.1_854775_856434_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|331aa|up_5|CP032513.1_856430_857423_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|CP032513.1_857537_858653_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|CP032513.1_858649_860596_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|CP032513.1_860668_860893_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|CP032513.1_861215_861536_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|CP032513.1_861566_863843_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|CP032513.1_864586_864805_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|CP032513.1_865089_865794_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|CP032513.1_865835_867557_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|CP032513.1_867557_869324_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|CP032513.1_869446_870412_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|CP032513.1_870956_871451_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1369aa|down_6|CP032513.1_871585_875692_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|CP032513.1_875846_876458_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|CP032513.1_876468_877812_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|CP032513.1_877902_879195_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	3	1440313-1440436	3	CRISPRCasFinder	no	c2c9_V-U4,DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Unclear	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA|30aa|down_7|CP032513.1_1449332_1449422_+	NA|407aa|up_9|CP032513.1_1424384_1425605_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_8|CP032513.1_1425617_1426034_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|335aa|up_7|CP032513.1_1426182_1427187_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_6|CP032513.1_1427250_1427487_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_5|CP032513.1_1428578_1429991_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|425aa|up_4|CP032513.1_1430880_1432154_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|223aa|up_3|CP032513.1_1435088_1435757_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|271aa|up_2|CP032513.1_1436542_1437355_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|173aa|up_1|CP032513.1_1439228_1439747_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP032513.1_1439872_1440178_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP032513.1_1440750_1442007_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP032513.1_1442047_1443421_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP032513.1_1443635_1444277_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP032513.1_1444316_1445465_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP032513.1_1445755_1446967_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP032513.1_1447079_1448012_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP032513.1_1448008_1449034_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|CP032513.1_1449332_1449422_+	NA	NA|390aa|down_8|CP032513.1_1449587_1450757_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|CP032513.1_1450902_1451484_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4	1531380-1531488	4	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Orphan	CTCTTTATATATACTTCCTTAATTCCT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA|123aa|down_0|CP032513.1_1531620_1531989_+,NA|282aa|down_2|CP032513.1_1533676_1534522_+,NA|85aa|down_3|CP032513.1_1534511_1534766_+,NA|74aa|down_4|CP032513.1_1534768_1534990_+,NA|330aa|down_6|CP032513.1_1535675_1536665_+	NA|112aa|up_9|CP032513.1_1516557_1516893_-	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|425aa|up_8|CP032513.1_1517108_1518382_-	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|298aa|up_7|CP032513.1_1519985_1520879_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|407aa|up_6|CP032513.1_1521013_1522234_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|232aa|up_5|CP032513.1_1522358_1523054_+	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD	NA|431aa|up_4|CP032513.1_1523006_1524299_-	PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional	NA|205aa|up_3|CP032513.1_1524457_1525072_-	PRK11621, PRK11621, Tat proofreading chaperone DmsD	NA|285aa|up_2|CP032513.1_1525114_1525969_-	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC)	NA|206aa|up_1|CP032513.1_1525970_1526588_-	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|766aa|up_0|CP032513.1_1526598_1528896_-	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|123aa|down_0|CP032513.1_1531620_1531989_+	NA	NA|390aa|down_1|CP032513.1_1532282_1533451_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|282aa|down_2|CP032513.1_1533676_1534522_+	NA	NA|85aa|down_3|CP032513.1_1534511_1534766_+	NA	NA|74aa|down_4|CP032513.1_1534768_1534990_+	NA	NA|170aa|down_5|CP032513.1_1535091_1535601_+	pfam07946, DUF1682, Protein of unknown function (DUF1682)	NA|330aa|down_6|CP032513.1_1535675_1536665_+	NA	NA|102aa|down_7|CP032513.1_1538933_1539239_-	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|237aa|down_8|CP032513.1_1539346_1540057_+	PRK02939, PRK02939, YnfC family lipoprotein	NA|114aa|down_9|CP032513.1_1540654_1540996_-	PRK13659, PRK13659, DUF1283 family protein
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	5	2375999-2376125	5	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA	NA|390aa|up_9|CP032513.1_2357503_2358672_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|208aa|up_8|CP032513.1_2361020_2361644_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_7|CP032513.1_2361640_2363329_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_6|CP032513.1_2363477_2366105_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_5|CP032513.1_2366251_2366974_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|644aa|up_4|CP032513.1_2367101_2369033_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|554aa|up_3|CP032513.1_2369045_2370707_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|425aa|up_2|CP032513.1_2370725_2371999_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|89aa|up_1|CP032513.1_2371923_2372190_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|CP032513.1_2373662_2375948_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|CP032513.1_2376181_2377312_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|CP032513.1_2377311_2377566_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|CP032513.1_2377619_2378270_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|69aa|down_3|CP032513.1_2378469_2378676_+	PRK09729, PRK09729, hypothetical protein; Provisional	NA|359aa|down_4|CP032513.1_2378717_2379794_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_5|CP032513.1_2379798_2381157_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_6|CP032513.1_2381429_2383058_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_7|CP032513.1_2383047_2384307_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_8|CP032513.1_2384303_2385494_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_9|CP032513.1_2385686_2386586_+	PRK09956, PRK09956, ISNCY family transposase
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	6	2893075-2893158	6	CRISPRCasFinder	no	cas3	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Unclear	TTATCCCCGCTGACGCGGGGAAC	23	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA|47aa|down_1|CP032513.1_2895086_2895227_+	NA|571aa|up_9|CP032513.1_2878044_2879757_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_8|CP032513.1_2879756_2881556_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_7|CP032513.1_2881871_2882237_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_6|CP032513.1_2882314_2883586_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_5|CP032513.1_2883576_2883837_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_4|CP032513.1_2883853_2884429_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_3|CP032513.1_2884576_2885437_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_2|CP032513.1_2885433_2886213_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_1|CP032513.1_2886190_2887528_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|426aa|up_0|CP032513.1_2890250_2891528_+	cd06174, MFS, Major Facilitator Superfamily	NA|224aa|down_0|CP032513.1_2894276_2894948_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|CP032513.1_2895086_2895227_+	NA	NA|291aa|down_2|CP032513.1_2895240_2896113_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|CP032513.1_2896172_2897471_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|CP032513.1_2897558_2899196_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|CP032513.1_2899423_2900215_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_6|CP032513.1_2900310_2902545_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_7|CP032513.1_2902592_2903894_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|CP032513.1_2903950_2906707_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_9|CP032513.1_2906938_2908279_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	7	3247360-3247461	7	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Orphan	TTGTTGATGTTGTTGTGTTTTGTA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA|55aa|down_0|CP032513.1_3247501_3247666_-	NA|115aa|up_9|CP032513.1_3234274_3234619_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP032513.1_3234808_3235747_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP032513.1_3235845_3236835_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP032513.1_3236856_3238188_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP032513.1_3238213_3239422_+	PRK12379, PRK12379, propionate kinase	NA|59aa|up_4|CP032513.1_3239455_3239632_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP032513.1_3241762_3242152_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP032513.1_3242223_3243588_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP032513.1_3244638_3245970_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|431aa|up_0|CP032513.1_3245997_3247290_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP032513.1_3247501_3247666_-	NA	NA|234aa|down_1|CP032513.1_3247688_3248390_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP032513.1_3248494_3249391_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|123aa|down_3|CP032513.1_3249597_3249966_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_4|CP032513.1_3250258_3251245_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_5|CP032513.1_3251314_3251707_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_6|CP032513.1_3251892_3252192_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_7|CP032513.1_3252181_3252586_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_8|CP032513.1_3252588_3252894_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|128aa|down_9|CP032513.1_3253432_3253816_-	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA
GCA_004171185.1_ASM417118v1	CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	8	4549494-4549635	8	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	Orphan	AATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACA	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,RT,PrimPol	NA,NA	NA|92aa|up_9|CP032513.1_4540949_4541225_+	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|344aa|up_8|CP032513.1_4541861_4542893_-	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|138aa|up_7|CP032513.1_4542995_4543409_+	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|149aa|up_6|CP032513.1_4543377_4543824_+	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|226aa|up_5|CP032513.1_4543838_4544516_+	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|530aa|up_4|CP032513.1_4544606_4546196_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|202aa|up_3|CP032513.1_4546588_4547194_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|60aa|up_2|CP032513.1_4547302_4547482_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|358aa|up_1|CP032513.1_4547603_4548677_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|up_0|CP032513.1_4548673_4549456_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|288aa|down_0|CP032513.1_4549669_4550533_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|514aa|down_1|CP032513.1_4550504_4552046_-	PRK10977, PRK10977, hypothetical protein; Provisional	NA|260aa|down_2|CP032513.1_4552303_4553083_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|down_3|CP032513.1_4553209_4554532_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|down_4|CP032513.1_4554583_4555807_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|down_5|CP032513.1_4555863_4556583_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|88aa|down_6|CP032513.1_4556743_4557007_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|215aa|down_7|CP032513.1_4558082_4558727_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|323aa|down_8|CP032513.1_4558832_4559801_+	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|461aa|down_9|CP032513.1_4559849_4561232_+	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA
