The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	173138	234735	4575536	tRNA,transposase,plate,protease	uncultured_Mediterranean_phage(11.11%)	52	NA	NA
QBB79456.1|173138_174563_+|protease	serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	6.5e-27
QBB79457.1|175962_176349_-	DUF3461 family protein	NA	NA	NA	NA	NA
QBB79458.1|176662_177487_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
QBB79459.1|177517_180190_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
QBB79460.1|180251_181046_-	methionine aminopeptidase	NA	NA	NA	NA	NA
QBB79461.1|181045_181267_-	hypothetical protein	NA	NA	NA	NA	NA
QBB79462.1|181413_182139_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
QBB79463.1|182396_183248_+	elongation factor Ts	NA	NA	NA	NA	NA
QBB79464.1|183394_184120_+	UMP kinase	NA	NA	NA	NA	NA
QBB79465.1|184411_184969_+	ribosome-recycling factor	NA	NA	NA	NA	NA
QBB79466.1|185060_186257_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
QBB79467.1|186445_187204_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	44.4	7.7e-27
QBB79468.1|187216_188074_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
QBB79469.1|188085_189438_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
QBB79470.1|189467_191900_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
QBB79471.1|192021_192507_+	chaperone protein Skp	NA	NA	NA	NA	NA
QBB79472.1|192510_193536_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
QBB79473.1|193640_194096_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
QBB79474.1|194099_194888_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
QBB79475.1|194887_196036_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
QBB79476.1|196032_196629_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	1.8e-26
QBB79477.1|196665_200148_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
QBB79478.1|200160_201120_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
QBB79479.1|201218_203360_+	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
QBB79480.1|203416_203806_+	VOC family protein	NA	NA	NA	NA	NA
QBB79481.1|203870_205169_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
QBB83108.1|205217_205472_-	protein rof	NA	NA	NA	NA	NA
QBB79482.1|205464_205665_-	YaeP family protein	NA	NA	NA	NA	NA
QBB79483.1|205830_206364_+	YaeQ family protein	NA	NA	NA	NA	NA
QBB79484.1|206372_206795_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
QBB79485.1|206808_207519_+	copper homeostasis/adhesion lipoprotein NlpE	NA	NA	NA	NA	NA
QBB79486.1|207673_208498_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA	NA
QBB79487.1|208550_210269_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
QBB79488.1|210379_211087_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
QBB79489.1|211083_211488_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
QBB79490.1|211605_212421_-	methionine ABC transporter substrate-binding protein MetQ	NA	NA	NA	NA	NA
QBB79491.1|212460_213114_-	methionine ABC transporter	NA	NA	NA	NA	NA
QBB79492.1|213106_214138_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	7.2e-36
QBB79493.1|214325_214901_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
QBB79494.1|220660_221464_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	36.2	1.6e-38
QBB79495.1|221502_222831_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QBB79496.1|224055_224856_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
QBB79497.1|224933_225704_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBB79498.1|225751_227110_-	lytic transglycosylase	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	5.8e-09
QBB79499.1|227181_227937_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
QBB79500.1|227970_228693_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBB79501.1|228689_229157_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.7	1.0e-50
QBB83109.1|229221_229953_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.6	7.6e-40
QBB79502.1|230292_231339_-	cytoplasmic protein	NA	NA	NA	NA	NA
QBB79503.1|231349_232225_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
QBB79504.1|232341_234225_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
QBB79505.1|234240_234735_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 2
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	246270	334859	4575536	lysis,head,tail,holin,terminase,integrase,transposase,capsid,plate,portal,protease	Shigella_phage(44.0%)	108	253293:253308	295661:295676
QBB79513.1|246270_246768_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB79514.1|246984_248724_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
QBB83110.1|248668_249454_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
QBB79515.1|249524_250580_+	DNA polymerase IV	NA	NA	NA	NA	NA
QBB79516.1|250631_250925_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA	NA
QBB79517.1|250927_251347_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA	NA
QBB79518.1|252111_252564_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBB79519.1|252598_252862_+	hypothetical protein	NA	NA	NA	NA	NA
253293:253308	attL	CATCTGCAACTGCTGG	NA	NA	NA	NA
QBB79520.1|254586_256044_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
QBB79521.1|256305_256764_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
QBB79522.1|256855_258100_+	esterase	NA	NA	NA	NA	NA
QBB79523.1|258157_258559_+	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
QBB79524.1|258597_259653_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	4.5e-118
QBB79525.1|259940_261044_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	8.2e-62
QBB79526.1|261055_262309_+	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	5.8e-96
QBB83111.1|262513_263278_-|integrase	site-specific integrase	integrase	Q9ZXG4	Shigella_phage	99.6	4.4e-147
QBB79527.1|263552_264721_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	7.6e-183
QBB79528.1|264802_265150_-	DNA-binding protein	NA	K7P6N4	Enterobacteria_phage	99.1	1.1e-57
QBB79529.1|265530_266684_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.0e-168
QBB83112.1|266756_267158_+	hypothetical protein	NA	K7PJK0	Enterobacteria_phage	98.5	4.6e-71
QBB79530.1|267117_267327_+	protein ninF	NA	G9L691	Escherichia_phage	97.1	2.0e-30
QBB79531.1|267319_268042_+	DNA-binding protein	NA	K7P7L0	Enterobacteria_phage	95.4	6.4e-124
QBB79532.1|268041_268332_+	DUF1364 domain-containing protein	NA	A0A192Y6R9	Salmonella_phage	100.0	1.0e-51
QBB79533.1|268328_268691_+	RusA family crossover junction endodeoxyribonuclease	NA	K7P6I9	Enterobacteria_phage	96.7	1.9e-60
QBB79534.1|268687_268876_+	protein ninH	NA	A5VW84	Enterobacteria_phage	100.0	5.5e-27
QBB79535.1|268872_269496_+	antitermination protein	NA	K7P6X1	Enterobacteria_phage	100.0	3.0e-114
QBB79536.1|270207_270531_+|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
QBB79537.1|270514_270991_+	lysozyme	NA	G5DA94	Enterobacteria_phage	100.0	9.8e-89
QBB79538.1|270987_271455_+|lysis	lysis protein	lysis	A0A291AWW3	Escherichia_phage	97.4	7.2e-76
QBB79539.1|271442_271595_+	hypothetical protein	NA	C6ZR68	Salmonella_phage	100.0	1.2e-21
QBB79540.1|271800_272001_+	DNA-binding protein	NA	B8K1H1	Salmonella_phage	96.6	1.3e-23
QBB79541.1|271973_272306_+	DNA-binding protein	NA	Q76H61	Enterobacteria_phage	93.6	5.5e-54
QBB79542.1|272747_273915_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
QBB79543.1|274013_274469_+	DUF2824 family protein	NA	Q716G5	Shigella_phage	98.7	4.4e-86
QBB79544.1|274471_275164_+	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	100.0	9.2e-112
QBB79545.1|275968_276325_-	deoxyribonucleoside 5-monophosphate phosphatase	NA	U5P0T3	Shigella_phage	99.1	3.9e-58
QBB79546.1|276452_277277_-	DUF2303 family protein	NA	Q8SBF9	Shigella_phage	100.0	3.5e-150
QBB79547.1|277342_277705_-	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
QBB79548.1|277792_278002_+	hypothetical protein	NA	A5LH65	Enterobacteria_phage	61.7	9.5e-12
QBB79549.1|278142_278388_+	hypothetical protein	NA	NA	NA	NA	NA
QBB79550.1|278305_278602_-	hypothetical protein	NA	Q8SBF7	Shigella_phage	100.0	1.2e-52
QBB79551.1|278774_279449_-	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
QBB79552.1|279539_279740_+	transcriptional regulator	NA	U5P445	Shigella_phage	100.0	7.9e-32
QBB79553.1|279783_280335_+	hypothetical protein	NA	S5FXP0	Shigella_phage	97.8	1.1e-99
QBB79554.1|280510_280690_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	66.7	2.3e-14
QBB79555.1|280679_281621_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	100.0	1.3e-153
QBB79556.1|281617_282112_+	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	98.8	3.6e-86
QBB79557.1|282111_282765_+	phage N-6-adenine-methyltransferase	NA	A0A0P0ZCC0	Stx2-converting_phage	99.5	1.6e-126
QBB79558.1|282761_283088_+	LexA family transcriptional regulator	NA	A0A291AWY9	Escherichia_phage	98.1	7.8e-53
QBB79559.1|283084_283474_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	99.2	1.6e-68
QBB79560.1|283493_284291_+	KilA-N domain-containing protein	NA	S5FM84	Shigella_phage	99.2	2.2e-149
QBB79561.1|284298_285288_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	100.0	1.5e-195
QBB79562.1|285302_285671_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	85.0	2.3e-53
QBB79563.1|285699_287031_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.4	1.4e-20
QBB79564.1|287327_287654_+|holin	phage holin, lambda family	holin	U5P0K7	Shigella_phage	99.1	1.2e-56
QBB79565.1|287657_288134_+	lysozyme	NA	S5FV07	Shigella_phage	96.8	1.2e-86
QBB79566.1|288117_288510_+	DUF2570 domain-containing protein	NA	U5P0U9	Shigella_phage	84.6	8.7e-51
QBB83113.1|288972_289305_+	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	99.1	8.2e-58
QBB79567.1|289355_289706_+	HNH endonuclease	NA	Q8SBD7	Shigella_phage	95.7	8.9e-63
QBB79568.1|289822_290326_+|terminase	phage terminase small subunit P27 family	terminase	U5P067	Shigella_phage	100.0	1.4e-88
QBB79569.1|292067_292250_+	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
QBB79570.1|292249_293491_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.0	1.9e-240
QBB79571.1|293432_294119_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	99.1	3.6e-124
QBB79572.1|294133_295339_+|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	99.0	2.9e-222
QBB79573.1|295388_295589_+	hypothetical protein	NA	S5FNU1	Shigella_phage	100.0	3.4e-27
QBB79574.1|295591_295915_+|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	99.1	1.1e-56
295661:295676	attR	CATCTGCAACTGCTGG	NA	NA	NA	NA
QBB79575.1|295911_296322_+|head,tail	head-tail adaptor protein	head,tail	M1FJ87	Enterobacteria_phage	95.6	7.2e-72
QBB79576.1|296296_296803_+	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	100.0	1.7e-91
QBB79577.1|296799_297360_+	hypothetical protein	NA	M1FQV7	Enterobacteria_phage	99.5	1.8e-105
QBB79578.1|297368_297536_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	96.3	8.6e-24
QBB79579.1|297522_299016_+|tail	phage tail protein	tail	U5P0H3	Shigella_phage	98.6	9.1e-274
QBB79580.1|299015_299372_+|tail	phage tail protein	tail	U5P076	Shigella_phage	99.2	1.5e-62
QBB79581.1|299371_299641_+|tail	phage tail assembly protein	tail	M1FPE4	Enterobacteria_phage	100.0	3.5e-43
QBB79582.1|299607_299790_+	hypothetical protein	NA	NA	NA	NA	NA
QBB79583.1|299782_301618_+|tail	phage tail tape measure protein	tail	S5FM63	Shigella_phage	99.5	3.5e-307
QBB79584.1|301636_303007_+	DNA circularization protein	NA	S5FUX4	Shigella_phage	97.4	5.8e-251
QBB79585.1|303003_304083_+|plate	baseplate protein	plate	Q8SBG7	Shigella_phage	98.6	1.1e-204
QBB79586.1|304082_304631_+|plate	phage baseplate assembly protein V	plate	Q8SBG6	Shigella_phage	99.5	1.9e-96
QBB79587.1|304627_305056_+|tail	phage tail protein	tail	U5P0R9	Shigella_phage	100.0	2.3e-81
QBB79588.1|305042_306101_+|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	98.9	1.2e-200
QBB79589.1|306091_306676_+	DUF2313 domain-containing protein	NA	M1FPN6	Enterobacteria_phage	98.5	1.6e-112
QBB79590.1|306679_307330_+	hypothetical protein	NA	S5FKM2	Shigella_phage	99.1	7.6e-116
QBB83114.1|307238_307736_+|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	92.8	1.0e-80
QBB79591.1|309673_309865_-	hypothetical protein	NA	NA	NA	NA	NA
QBB79592.1|310063_310783_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
QBB79593.1|310793_312221_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
QBB79594.1|312213_312909_+	lactate utilization protein C	NA	NA	NA	NA	NA
QBB79595.1|312863_313076_-	hypothetical protein	NA	NA	NA	NA	NA
QBB79596.1|312982_313180_-	universal stress protein	NA	NA	NA	NA	NA
QBB79597.1|314849_316943_-|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	49.2	1.5e-173
QBB79598.1|316944_317196_-	DNA-binding protein	NA	A0A2D1GNH1	Pseudomonas_phage	53.0	4.8e-18
QBB79599.1|317388_317904_+	hypothetical protein	NA	A0A2D1GNR8	Pseudomonas_phage	60.9	2.2e-33
QBB79600.1|318170_319097_+	taurine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB79601.1|319109_319877_+	taurine ABC transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	39.8	4.3e-25
QBB79602.1|319873_320713_+	taurine ABC transporter permease TauC	NA	NA	NA	NA	NA
QBB79603.1|321654_322629_-	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA	NA
QBB79604.1|324620_325124_+	transcriptional regulator	NA	NA	NA	NA	NA
QBB79605.1|325124_326282_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	22.1	3.9e-06
QBB79606.1|326419_326614_+	hypothetical protein	NA	NA	NA	NA	NA
QBB79607.1|326633_327854_+	peptide antibiotic transporter SbmA	NA	NA	NA	NA	NA
QBB79608.1|327866_328961_+	DUF1615 domain-containing protein	NA	NA	NA	NA	NA
QBB79609.1|329019_329328_-	DUF2755 family protein	NA	NA	NA	NA	NA
QBB79610.1|329587_329800_+	DUF2754 family protein	NA	NA	NA	NA	NA
QBB79611.1|329823_330918_-	D-alanine--D-alanine ligase A	NA	NA	NA	NA	NA
QBB79612.1|330998_331199_+	hypothetical protein	NA	NA	NA	NA	NA
QBB79613.1|331380_331641_+	anti-adapter protein IraP	NA	NA	NA	NA	NA
QBB79614.1|333274_333595_+	phosphate starvation-inducible protein PsiF	NA	NA	NA	NA	NA
QBB79615.1|333645_334859_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
>prophage 3
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	468237	541671	4575536	tRNA,transposase,tail	Shigella_phage(38.89%)	59	NA	NA
QBB79723.1|468237_469332_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
QBB79724.1|469400_470327_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA	NA
QBB79725.1|470556_471039_+	ureidoglycolate lyase	NA	NA	NA	NA	NA
QBB79726.1|471116_471932_+	transcriptional regulator	NA	NA	NA	NA	NA
QBB79727.1|472021_473803_+	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	26.8	1.3e-37
QBB79728.1|475085_476231_+	glycerate 3-kinase	NA	W6LM47	Streptococcus_phage	41.7	1.8e-48
QBB79729.1|476458_477244_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA	NA
QBB83118.1|477254_478487_-	allantoate amidohydrolase	NA	NA	NA	NA	NA
QBB79730.1|479133_480027_+	carbamate kinase	NA	NA	NA	NA	NA
QBB79731.1|480163_481231_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QBB79732.1|481227_481737_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
QBB79733.1|481854_482577_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
QBB79734.1|482579_483074_-	peptidylprolyl isomerase B	NA	NA	NA	NA	NA
QBB79735.1|483247_484633_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
QBB79736.1|484668_485190_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
QBB79737.1|485297_485510_-	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
QBB79738.1|485511_486378_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
QBB79739.1|486858_487401_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA	NA
QBB79740.1|487601_488294_+	molecular chaperone FimC	NA	NA	NA	NA	NA
QBB79741.1|489927_490689_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBB79742.1|490871_491762_-	DUF4434 family protein	NA	NA	NA	NA	NA
QBB79743.1|491762_494741_-	phage receptor	NA	NA	NA	NA	NA
QBB79744.1|494727_496965_-	phage adsorption protein NrfB	NA	NA	NA	NA	NA
QBB79745.1|497685_497895_+	hypothetical protein	NA	NA	NA	NA	NA
QBB79746.1|497891_499334_-	Cu(+)/Ag(+) sensor histidine kinase CusS	NA	NA	NA	NA	NA
QBB79747.1|499323_500007_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
QBB79748.1|501360_502634_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	6.8e-177
QBB83119.1|502656_502785_+	umuD domain protein	NA	O64339	Escherichia_phage	64.7	3.1e-05
QBB79749.1|506567_507944_+	phenylalanine-specific permease	NA	NA	NA	NA	NA
QBB79750.1|508011_509259_-	miniconductance mechanosensitive channel YbdG	NA	NA	NA	NA	NA
QBB79751.1|509366_510020_-	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
QBB79752.1|510113_510482_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
QBB79753.1|510546_510795_-	DUF1158 domain-containing protein	NA	NA	NA	NA	NA
QBB79754.1|511993_512167_+	hypothetical protein	NA	NA	NA	NA	NA
QBB79755.1|512889_514046_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB79756.1|514404_515573_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
QBB79757.1|515629_515767_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
QBB79758.1|516822_517969_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.6	2.3e-147
QBB79759.1|518338_519241_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBB83120.1|519450_520197_-	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA	NA
QBB79760.1|520568_521132_+	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA	NA
QBB79761.1|521376_522942_+	alkyl hydroperoxide reductase subunit F	NA	G3MA85	Bacillus_virus	34.6	7.6e-45
QBB79762.1|523062_523491_-	universal stress protein UspG	NA	A0A1W6JNV4	Morganella_phage	39.2	1.9e-19
QBB79763.1|524952_525141_-	hypothetical protein	NA	NA	NA	NA	NA
QBB79764.1|525179_525590_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
QBB79765.1|525818_526625_-	ribonuclease I	NA	NA	NA	NA	NA
QBB79766.1|526738_528202_-	anion permease	NA	NA	NA	NA	NA
QBB79767.1|528252_529131_-	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	NA	NA	NA	NA	NA
QBB79768.1|529105_529657_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
QBB79769.1|529660_531193_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
QBB79770.1|531203_532112_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
QBB79771.1|532108_532405_-	citrate lyase ACP	NA	NA	NA	NA	NA
QBB79772.1|532419_533478_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
QBB79773.1|535943_536639_-	protein mom	NA	A0A0C4UQZ7	Shigella_phage	98.3	5.2e-131
QBB79774.1|536589_536778_-	Com family DNA-binding transcriptional regulator	NA	A0A0C4UQS3	Shigella_phage	98.4	3.7e-31
QBB79775.1|537162_537918_+|tail	phage tail protein	tail	A0A0C4UQV0	Shigella_phage	91.0	3.7e-130
QBB79776.1|538925_539453_+|tail	tail fiber assembly protein	tail	A0A0A7NRZ7	Enterobacteria_phage	92.6	7.1e-88
QBB79777.1|539481_540015_-|tail	tail fiber assembly protein	tail	A0A0C4UQZ5	Shigella_phage	97.7	3.5e-95
QBB79778.1|540514_541671_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
>prophage 4
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	681969	707424	4575536	integrase,transposase,terminase	Enterobacteria_phage(25.93%)	28	686496:686510	720046:720060
QBB83124.1|681969_682413_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	48.7	8.4e-34
QBB79898.1|684148_684445_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	83.5	6.2e-41
QBB79899.1|684422_685784_-	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	83.1	2.7e-171
QBB79900.1|686291_687504_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.3	3.5e-167
686496:686510	attL	GAACGTCAGCGTCTG	NA	NA	NA	NA
QBB83125.1|689967_690246_+	hypothetical protein	NA	Q9ZWY1	Enterobacteria_phage	95.6	1.6e-46
QBB79901.1|690242_690653_+	recombination protein NinB	NA	A0A0P0ZCW6	Stx2-converting_phage	98.5	8.0e-71
QBB79902.1|690649_690826_+	NinE family protein	NA	K7PHE6	Enterobacteria_phage	100.0	2.7e-28
QBB79903.1|690867_691176_-	XRE family transcriptional regulator	NA	A0A088CD40	Shigella_phage	98.0	3.5e-47
QBB79904.1|691165_691495_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	94.3	1.6e-42
QBB83126.1|691519_692377_+	peptidase	NA	S5MQL6	Escherichia_phage	77.0	6.5e-115
QBB79905.1|692373_692607_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	51.4	5.1e-14
QBB79906.1|693511_694390_+	AAA family ATPase	NA	Q8W641	Enterobacteria_phage	96.0	7.8e-140
QBB79907.1|694386_695661_+	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	96.2	2.0e-229
QBB79908.1|695664_697266_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.5	4.9e-148
QBB79909.1|697285_697633_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB79910.1|697629_698304_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
QBB79911.1|698642_699152_-	DedA family protein	NA	NA	NA	NA	NA
QBB79912.1|700064_700748_+|terminase	PBSX family phage terminase large subunit	terminase	K4NXU1	Acinetobacter_phage	73.4	3.1e-96
QBB79913.1|700778_702051_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
QBB79914.1|702088_702214_+	DUF2737 family protein	NA	A0A1V0E5L8	Salmonella_phage	100.0	8.4e-16
QBB79915.1|702210_702435_+	ead/Ea22-like family protein	NA	A0A1I9LJV0	Stx_converting_phage	93.8	2.8e-30
QBB79916.1|702409_703578_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	8.9e-184
QBB79917.1|703639_703966_+	ead/Ea22-like family protein	NA	A0A0P0ZBW5	Stx2-converting_phage	87.5	6.6e-36
QBB79918.1|704038_704473_+	DUF551 domain-containing protein	NA	V5UT79	Shigella_phage	73.4	1.4e-36
QBB79919.1|704420_705128_+	ORF6N domain-containing protein	NA	A0A0P0ZD96	Stx2-converting_phage	49.0	4.9e-44
QBB79920.1|705449_706073_+	phage antirepressor Ant	NA	A0A0P0ZAZ7	Stx2-converting_phage	86.0	2.1e-94
QBB79921.1|706157_706376_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
QBB79922.1|706353_707424_+|integrase	integrase	integrase	K7P6P6	Enterobacteria_phage	100.0	3.9e-202
720046:720060	attR	CAGACGCTGACGTTC	NA	NA	NA	NA
>prophage 5
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	861215	905002	4575536	tRNA,transposase,protease	Stx2-converting_phage(18.75%)	31	NA	NA
QBB80039.1|861215_861536_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
QBB80040.1|861566_863843_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
QBB80041.1|864586_864805_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBB80042.1|865089_865794_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBB80043.1|865835_867557_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.6	1.5e-22
QBB80044.1|867557_869324_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.0	4.6e-22
QBB80045.1|869446_870412_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.3	3.2e-62
QBB80046.1|870956_871451_+	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
QBB80047.1|871585_875692_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
QBB80048.1|875846_876458_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
QBB80049.1|876468_877812_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	41.0	4.3e-81
QBB80050.1|877902_879195_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
QBB80051.1|881889_882507_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.1	2.5e-76
QBB80052.1|882508_883372_+	dimethyl sulfoxide reductase	NA	NA	NA	NA	NA
QBB80053.1|883407_884034_-	hydrolase	NA	NA	NA	NA	NA
QBB80054.1|884348_885497_+	MFS transporter	NA	NA	NA	NA	NA
QBB80055.1|885826_886501_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
QBB80056.1|886497_886845_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80057.1|886864_888466_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.5	4.9e-148
QBB83132.1|888536_889577_+	amino acid permease	NA	NA	NA	NA	NA
QBB80058.1|889573_890730_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB83133.1|891183_891828_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBB80059.1|892590_892857_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80060.1|892938_893679_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.1	2.3e-20
QBB80061.1|893870_896153_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.2	4.9e-162
QBB80062.1|896207_897065_-	formate transporter FocA	NA	NA	NA	NA	NA
QBB80063.1|897470_899231_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
QBB80064.1|900187_901276_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
QBB80065.1|901346_902630_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
QBB80066.1|902773_904102_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QBB80067.1|904237_905002_+|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 6
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	917464	978638	4575536	lysis,head,tail,terminase,holin,integrase,transposase,tRNA,capsid,portal	Enterobacteria_phage(40.62%)	50	942433:942447	965232:965246
QBB80078.1|917464_918250_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
QBB80079.1|918246_919569_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
QBB80080.1|919549_920254_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
QBB80081.1|920253_924714_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
QBB80082.1|924876_926205_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QBB80083.1|926602_926851_+	damage-inducible protein DinI	NA	A5LH55	Enterobacteria_phage	97.6	4.1e-38
QBB83134.1|927334_927961_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBB80084.1|928276_929920_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
QBB80085.1|929920_930100_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80086.1|930099_930723_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	76.5	3.5e-78
QBB80087.1|931831_933781_-|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	98.0	0.0e+00
QBB80088.1|934201_934558_-|tail	phage tail protein	tail	Q8W622	Enterobacteria_phage	98.3	5.3e-63
QBB80089.1|934557_936054_-|tail	phage tail protein	tail	Q8W623	Enterobacteria_phage	97.2	2.9e-272
QBB80090.1|936050_936212_-	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	76.6	9.2e-15
QBB80091.1|936221_936785_-	hypothetical protein	NA	Q8W624	Enterobacteria_phage	98.9	2.3e-105
QBB80092.1|936781_937306_-	hypothetical protein	NA	Q8W625	Enterobacteria_phage	97.7	2.3e-94
QBB80093.1|937271_937688_-|head,tail	head-tail adaptor protein	head,tail	Q8HAC9	Salmonella_phage	69.1	9.0e-46
QBB80094.1|937684_938008_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8W626	Enterobacteria_phage	99.1	9.7e-56
QBB80095.1|938052_939819_-|capsid	phage major capsid protein	capsid	Q8W627	Enterobacteria_phage	99.2	3.3e-198
QBB80096.1|939760_941002_-|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	93.5	2.2e-228
QBB80097.1|941001_941184_-	hypothetical protein	NA	A0A1B5FP99	Escherichia_phage	80.0	1.4e-19
QBB80098.1|941195_942953_-|terminase	terminase large subunit	terminase	A0A1B5FP96	Escherichia_phage	99.7	0.0e+00
942433:942447	attL	CTGACCATATTTTTG	NA	NA	NA	NA
QBB80099.1|942952_943435_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B5FPA0	Escherichia_phage	98.1	8.7e-85
QBB80100.1|943582_943933_-	HNH endonuclease	NA	Q8W633	Enterobacteria_phage	99.1	4.7e-64
QBB80101.1|943975_944440_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	90.8	1.2e-67
QBB80102.1|944436_944958_-	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	97.5	6.3e-89
QBB80103.1|945791_946948_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.0	2.6e-66
QBB80104.1|947845_948193_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80105.1|948189_948864_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.8	2.0e-10
QBB80106.1|948962_949178_-|holin	holin	holin	M1FN85	Enterobacteria_phage	98.6	5.3e-34
QBB80107.1|950686_951052_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	68.1	7.1e-39
QBB80108.1|952112_952391_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	43.8	2.4e-10
QBB80109.1|952558_952771_-	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	95.7	6.6e-29
QBB80110.1|952973_953153_-	hypothetical protein	NA	NA	NA	NA	NA
QBB83135.1|953365_953782_-	hypothetical protein	NA	A0A076GCN9	Escherichia_phage	72.0	1.5e-24
QBB80111.1|954583_954898_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	62.6	2.1e-31
QBB80112.1|954956_955160_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
QBB80113.1|955159_956185_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	57.9	2.0e-102
QBB83136.1|956420_957218_+	protein MtfA	NA	NA	NA	NA	NA
QBB80114.1|957555_958818_+	DUF4102 domain-containing protein	NA	A0A1B0VMI6	Pseudomonas_phage	39.0	2.4e-73
QBB80115.1|958924_960093_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	7.6e-183
QBB80116.1|960556_961712_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80117.1|964801_965518_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
965232:965246	attR	CTGACCATATTTTTG	NA	NA	NA	NA
QBB80118.1|967894_968845_-	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA	NA
QBB80119.1|968946_969864_-	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA	NA
QBB83137.1|970321_971254_-	L,D-transpeptidase	NA	NA	NA	NA	NA
QBB80120.1|971318_972398_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
QBB80121.1|973138_973684_-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
QBB80122.1|975603_976047_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80123.1|977481_978638_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
>prophage 7
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	983586	994295	4575536	transposase	Stx2-converting_phage(71.43%)	8	NA	NA
QBB80128.1|983586_984800_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.3	5.1e-166
QBB80129.1|984965_985295_-	DUF496 family protein	NA	NA	NA	NA	NA
QBB80130.1|986506_986854_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80131.1|986873_988475_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.5	4.9e-148
QBB80132.1|989271_990873_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.5	4.9e-148
QBB80133.1|990892_991240_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80134.1|991236_991911_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
QBB80135.1|993022_994295_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 8
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1048042	1108897	4575536	tRNA,transposase,tail	Enterobacteria_phage(25.0%)	50	NA	NA
QBB80180.1|1048042_1049239_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QBB80181.1|1052466_1053315_-	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA	NA
QBB80182.1|1053368_1053524_+	heat-shock protein	NA	NA	NA	NA	NA
QBB80183.1|1053448_1054801_+	molecular chaperone	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	20.6	6.0e-06
QBB80184.1|1054812_1054986_-	molecular chaperone	NA	NA	NA	NA	NA
QBB80185.1|1055229_1056753_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
QBB80186.1|1056749_1057511_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
QBB80187.1|1057507_1058167_-	VWA domain-containing protein	NA	NA	NA	NA	NA
QBB80188.1|1058600_1059797_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QBB80189.1|1060772_1063922_+	multidrug efflux RND transporter permease subunit MdtB	NA	NA	NA	NA	NA
QBB80190.1|1063922_1066988_+	multidrug efflux RND transporter permease subunit MdtC	NA	NA	NA	NA	NA
QBB80191.1|1066988_1068404_+	MFS transporter	NA	NA	NA	NA	NA
QBB80192.1|1068400_1069804_+	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	29.8	9.2e-34
QBB80193.1|1069800_1070523_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	3.7e-31
QBB80194.1|1070713_1071046_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
QBB80195.1|1071192_1072554_+	U32 family peptidase	NA	Q6DW11	Phage_TP	99.5	7.1e-217
QBB80196.1|1072716_1072908_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80197.1|1072895_1073213_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80198.1|1073618_1074518_+	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.0	9.8e-13
QBB80199.1|1074599_1075379_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
QBB80200.1|1075478_1076519_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
QBB80201.1|1078702_1078987_-	galactitol-specific phosphotransferase enzyme IIB component	NA	NA	NA	NA	NA
QBB80202.1|1079017_1079470_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA	NA
QBB80203.1|1080775_1081630_-	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
QBB80204.1|1081937_1082990_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
QBB80205.1|1083026_1083620_+	MFS transporter	NA	NA	NA	NA	NA
QBB80206.1|1084616_1085582_+	sugar kinase	NA	NA	NA	NA	NA
QBB80207.1|1085555_1086302_-	transcriptional regulator	NA	NA	NA	NA	NA
QBB80208.1|1086353_1087172_-	glycoside hydrolase family 25 protein	NA	D0R7H8	Paenibacillus_phage	37.1	2.5e-23
QBB80209.1|1087236_1088037_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
QBB80210.1|1088033_1088822_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
QBB80211.1|1089044_1089317_-	transcriptional regulator	NA	NA	NA	NA	NA
QBB80212.1|1089437_1090280_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
QBB80213.1|1090498_1090837_+	heavy metal resistance protein	NA	NA	NA	NA	NA
QBB80214.1|1091967_1094448_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
QBB80215.1|1094463_1095138_-	fimbrial assembly protein	NA	NA	NA	NA	NA
QBB80216.1|1095218_1095761_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
QBB80217.1|1096053_1096335_-	DUF2574 family protein	NA	NA	NA	NA	NA
QBB80218.1|1096331_1096544_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80219.1|1096596_1097706_-	protein mrp	NA	NA	NA	NA	NA
QBB80220.1|1097837_1099871_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.8	1.0e-54
QBB80221.1|1100011_1100215_+	WGR domain-containing protein	NA	NA	NA	NA	NA
QBB80222.1|1100266_1101422_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	4.0e-67
QBB80223.1|1103205_1103751_+|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	73.1	2.5e-72
QBB80224.1|1103774_1105190_+|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	53.8	4.0e-77
QBB80225.1|1105140_1105764_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	75.4	3.3e-76
QBB80226.1|1105763_1105943_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80227.1|1105943_1107587_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
QBB83142.1|1107902_1108529_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBB80228.1|1108627_1108897_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	81.7	1.2e-19
>prophage 9
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1142860	1261107	4575536	tail,holin,integrase,transposase,tRNA	Enterobacteria_phage(33.33%)	113	1175679:1175738	1222065:1222832
QBB80261.1|1142860_1143040_-|integrase	integrase	integrase	NA	NA	NA	NA
QBB80262.1|1143116_1143449_+	multidrug SMR transporter	NA	NA	NA	NA	NA
QBB80263.1|1144384_1144888_+	kinase inhibitor	NA	NA	NA	NA	NA
QBB80264.1|1146959_1148042_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	79.5	1.0e-165
QBB80265.1|1149454_1150243_+|transposase	transposase	transposase	A0A1W6JP07	Morganella_phage	94.8	5.9e-131
QBB80266.1|1151059_1151293_-	SirA-like protein	NA	NA	NA	NA	NA
QBB80267.1|1151289_1152495_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
QBB80268.1|1152681_1153095_+	lipoprotein	NA	NA	NA	NA	NA
QBB80269.1|1153128_1154616_-	alpha-amylase	NA	NA	NA	NA	NA
QBB80270.1|1154693_1155059_-	flagellar protein FliT	NA	NA	NA	NA	NA
QBB80271.1|1155058_1155469_-	flagella export chaperone FliS	NA	NA	NA	NA	NA
QBB80272.1|1155493_1156900_-	flagellar hook-associated protein 2	NA	NA	NA	NA	NA
QBB80273.1|1157165_1158818_+	flagellin FliC	NA	NA	NA	NA	NA
QBB80274.1|1158982_1159702_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
QBB80275.1|1159747_1160299_+	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA	NA
QBB80276.1|1160386_1161187_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB80277.1|1161291_1162278_+	D-cysteine desulfhydrase	NA	NA	NA	NA	NA
QBB80278.1|1162292_1162961_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB80279.1|1162957_1163710_+	L-cystine ABC transporter ATP-binding protein YecC	NA	G9BWD6	Planktothrix_phage	41.4	6.0e-32
QBB80280.1|1163939_1164566_+	transcriptional regulator SdiA	NA	NA	NA	NA	NA
QBB80281.1|1164592_1164817_-	DUF2594 family protein	NA	NA	NA	NA	NA
QBB80282.1|1165275_1165932_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBB80283.1|1165928_1167761_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
QBB80284.1|1167817_1168366_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
QBB80285.1|1169015_1169681_+	YecA family protein	NA	NA	NA	NA	NA
QBB80286.1|1169742_1170954_-	tyrosine transporter TyrP	NA	NA	NA	NA	NA
QBB80287.1|1171143_1171383_+	DUF2492 family protein	NA	NA	NA	NA	NA
QBB80288.1|1171419_1171917_-	non-heme ferritin	NA	NA	NA	NA	NA
QBB80289.1|1172087_1172411_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80290.1|1172673_1172760_+	stress response protein AzuC	NA	NA	NA	NA	NA
QBB80291.1|1172874_1173126_+	DUF2766 domain-containing protein	NA	NA	NA	NA	NA
QBB80292.1|1173205_1173709_-	non-heme ferritin	NA	NA	NA	NA	NA
QBB80293.1|1174505_1175495_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1175679:1175738	attL	GGTAATGCTGCCAACTTACTGATTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGC	NA	NA	NA	NA
QBB80294.1|1176913_1178647_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.7	6.8e-87
QBB80295.1|1178862_1179429_+	VOC family protein	NA	NA	NA	NA	NA
QBB80296.1|1179442_1180189_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB80297.1|1180576_1181677_+	cytochrome C	NA	NA	NA	NA	NA
QBB80298.1|1181701_1184131_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA	NA
QBB80299.1|1184295_1185267_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
QBB80300.1|1185263_1186007_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.0	2.7e-24
QBB80301.1|1186047_1186443_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80302.1|1186495_1187266_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	99.2	6.1e-72
QBB83145.1|1187278_1188262_-|integrase	site-specific integrase	integrase	Q8W658	Enterobacteria_phage	97.2	5.4e-182
QBB80303.1|1189662_1190352_+	antiterminator	NA	I6PDF8	Cronobacter_phage	49.4	1.3e-57
QBB80304.1|1191172_1191364_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80305.1|1191540_1192737_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QBB80306.1|1193000_1193402_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	66.9	8.7e-38
QBB80307.1|1193413_1193785_+|tail	phage tail protein	tail	NA	NA	NA	NA
QBB80308.1|1193937_1195093_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.0e-67
QBB83146.1|1195086_1195629_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	73.4	5.4e-59
QBB80309.1|1196035_1196776_+|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	94.3	3.5e-125
QBB80310.1|1196834_1197221_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	91.4	9.2e-61
QBB80311.1|1197229_1197559_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	98.2	3.8e-55
QBB80312.1|1200469_1200799_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	96.3	8.9e-57
QBB80313.1|1200798_1201497_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	88.8	1.2e-119
QBB80314.1|1201501_1202245_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	6.8e-145
QBB80315.1|1202843_1206323_+	host specificity protein J	NA	A5LH43	Enterobacteria_phage	84.7	0.0e+00
QBB80316.1|1206390_1206990_+	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	93.0	3.6e-104
QBB80317.1|1207053_1208469_+|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	44.8	1.6e-46
QBB80318.1|1209043_1209223_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80319.1|1209223_1210975_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
QBB80320.1|1211575_1211824_-	damage-inducible protein DinI	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
QBB80321.1|1212552_1213749_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QBB80322.1|1213940_1214195_-	isochorismatase family protein	NA	NA	NA	NA	NA
QBB80323.1|1214504_1216277_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
QBB80324.1|1216394_1216847_+	NUDIX pyrophosphatase	NA	NA	NA	NA	NA
QBB80325.1|1216875_1217616_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBB80326.1|1217650_1218172_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.0e-10
QBB80327.1|1218173_1218485_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80328.1|1219177_1219525_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80329.1|1219544_1221146_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.8	2.2e-148
QBB83147.1|1222385_1222451_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80330.1|1222589_1223201_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
1222065:1222832	attR	GCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCAGCGTGGTGATGGTTGAAAGGGGAACCCGGCTTTCTGCAACCAGGAAGTCTTCACCGTTATGACCGATAATGATCCCGACGTGATTACTCCAGCAATTTGATGCAGCTGATATTTGACCAAATAAGGCAGCACCTATACATGTAAAGACGATATCTCCAATTTCATATTCAGCAGGGTAATTAATATTCACGTTGTCATTCCATTGAAATAGATACGAATATACGTAATAGCATAAAAAAATTATTTTTTCAGGAGTCGCAATGTATATTTTTATTACGCATTTCTTCACTGAATATGTAATATTCAAATATTTGCTTCCAATATAACCTGTTGAATAAATTATACTGTGCCATTTTTCAGATCATCGGGACACCTCGCAAGTTTTCTTCATCCTACGCTGGATATCTATCCAGCATTTTTTTATCATACAGCATTATCTTTGATTCATTACGCAGGAGCGTCATGTGATAGGCAGACTCAGAGGCATCATCATTGAAAAACAACCCCCGCTGGTGTTAATTGAAGTGGGCGGCGTAGGCTATGAAGTGCATATGCCGATGACCTGTTTTTATGAACTCCCTGAAGCGGGTCAGGAAGCGATCGTTTTCACCCACTTTGTGGTGCGTGAAGACGCGCAACTGCTGTACGGTTTTAACAATAAACAAGAACGCACGTTGTTCAAAGAGTTGATCAAAACCAACGGCGTC	NA	NA	NA	NA
QBB80331.1|1223209_1224220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.2	2.8e-08
QBB80332.1|1224366_1225152_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
QBB80333.1|1225148_1225904_-	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	28.3	3.8e-18
QBB83148.1|1225982_1226915_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
QBB80334.1|1226930_1228253_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	1.2e-14
QBB80335.1|1228372_1229344_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
QBB80336.1|1229474_1230917_-	pyruvate kinase	NA	NA	NA	NA	NA
QBB80337.1|1231044_1231914_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QBB80338.1|1232251_1233727_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.3	9.9e-79
QBB80339.1|1233961_1235773_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
QBB80340.1|1235809_1236451_+	KHG/KDPG aldolase	NA	NA	NA	NA	NA
QBB80341.1|1236505_1237684_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
QBB80342.1|1238174_1238531_+	protein YebF	NA	NA	NA	NA	NA
QBB80343.1|1238857_1239517_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
QBB80344.1|1239725_1241786_+	oligopeptidase B	NA	NA	NA	NA	NA
QBB80345.1|1241782_1242445_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	41.6	3.5e-07
QBB80346.1|1242468_1243125_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
QBB80347.1|1243226_1243457_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	61.8	1.3e-14
QBB80348.1|1243595_1243970_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
QBB80349.1|1244858_1245200_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
QBB83149.1|1246635_1246917_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	42.4	9.8e-12
QBB80350.1|1247033_1248190_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80351.1|1248290_1248479_-	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	93.5	8.8e-17
QBB80352.1|1248529_1249627_-	hypothetical protein	NA	I6PCV5	Cronobacter_phage	83.8	1.3e-181
QBB80353.1|1249632_1249953_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	83.3	2.5e-40
QBB80354.1|1250762_1251209_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.6	3.0e-79
QBB80355.1|1251224_1251653_-	hypothetical protein	NA	Q6H9S3	Enterobacteria_phage	100.0	2.3e-76
QBB80356.1|1251649_1251976_-|transposase	IS3 family transposase	transposase	Q6H9S4	Enterobacteria_phage	97.2	1.8e-54
QBB80357.1|1254197_1254473_-	hypothetical protein	NA	A0A0U2QW85	Escherichia_phage	93.4	4.4e-41
QBB83150.1|1254547_1254718_-	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	91.1	1.9e-23
QBB80358.1|1254717_1254867_-	cell division protein	NA	A0A0U2RTC4	Escherichia_phage	95.5	3.1e-17
QBB80359.1|1255748_1256009_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80360.1|1256075_1256675_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	90.5	2.0e-102
QBB80361.1|1256674_1256965_+	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	3.3e-47
QBB80362.1|1256961_1257498_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	68.6	4.8e-68
QBB80363.1|1258305_1258521_+|holin	holin	holin	M1FN85	Enterobacteria_phage	93.0	1.4e-31
QBB80364.1|1258520_1258727_+	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	93.9	9.9e-30
QBB83151.1|1258751_1259914_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB83152.1|1259983_1260595_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QBB80365.1|1260483_1261107_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	75.9	2.7e-78
>prophage 10
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1532282	1589274	4575536	transposase,holin	Shigella_phage(20.0%)	55	NA	NA
QBB80589.1|1532282_1533450_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
QBB80590.1|1533676_1534522_+	hypothetical protein	NA	A0A2I7QT96	Vibrio_phage	60.2	7.0e-21
QBB80591.1|1534511_1534766_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80592.1|1534768_1534990_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80593.1|1535091_1535601_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80594.1|1535675_1536665_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80595.1|1538933_1539239_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
QBB80596.1|1539346_1540057_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
QBB80597.1|1540654_1540996_-	DUF1283 family protein	NA	NA	NA	NA	NA
QBB80598.1|1543376_1543661_-	kinase	NA	NA	NA	NA	NA
QBB80599.1|1545562_1546438_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA	NA
QBB80600.1|1546461_1546752_+	autoinducer 2-degrading protein LsrG	NA	NA	NA	NA	NA
QBB80601.1|1546790_1547549_+	trans-aconitate 2-methyltransferase	NA	NA	NA	NA	NA
QBB80602.1|1547552_1548467_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80603.1|1549826_1551278_-	altronate oxidoreductase	NA	NA	NA	NA	NA
QBB83165.1|1551504_1552452_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.5	7.3e-19
QBB80604.1|1553061_1553454_-	DUF4186 domain-containing protein	NA	NA	NA	NA	NA
QBB80605.1|1553420_1554347_-	glutaminase 2	NA	NA	NA	NA	NA
QBB80606.1|1554410_1554515_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
QBB80607.1|1555527_1555869_+	putative protein YneK	NA	NA	NA	NA	NA
QBB80608.1|1555898_1556639_+	putative protein YneK	NA	NA	NA	NA	NA
QBB80609.1|1556788_1557979_+	sugar efflux transporter	NA	NA	NA	NA	NA
QBB80610.1|1558003_1558669_-	NAAT family transporter MarC	NA	NA	NA	NA	NA
QBB80611.1|1558880_1559315_+	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA	NA
QBB80612.1|1559771_1559990_+	multiple antibiotic resistance protein MarB	NA	NA	NA	NA	NA
QBB80613.1|1560020_1560920_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA	NA
QBB80614.1|1561183_1562302_+	efflux MFS transporter YdeE	NA	NA	NA	NA	NA
QBB80615.1|1562428_1562524_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80616.1|1563043_1565089_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA	NA
QBB83166.1|1564995_1565214_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80617.1|1565225_1565972_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
QBB80618.1|1566060_1566747_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB80619.1|1566924_1567128_+	protein YdfZ	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
QBB80620.1|1570577_1571733_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80621.1|1571730_1572036_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80622.1|1572060_1572300_+	antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
QBB80623.1|1572299_1572587_+	mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
QBB80624.1|1572658_1572814_+	protein HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
QBB80625.1|1573348_1573627_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	7.4e-12
QBB80626.1|1573628_1574678_+	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	54.0	9.4e-108
QBB80627.1|1574690_1575047_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	62.7	6.1e-35
QBB80628.1|1575061_1575883_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	59.0	1.6e-78
QBB80629.1|1576417_1576744_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80630.1|1576779_1576911_+	DUF3927 domain-containing protein	NA	H6WZJ7	Escherichia_phage	96.4	1.8e-05
QBB80631.1|1577191_1577527_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	74.8	5.2e-44
QBB80632.1|1577786_1577975_+	DUF1737 domain-containing protein	NA	H6WZJ9	Escherichia_phage	95.2	7.2e-27
QBB80633.1|1577971_1578133_+	hypothetical protein	NA	Q08JA2	Stx2-converting_phage	91.3	5.4e-15
QBB80634.1|1578282_1578462_+|holin	holin	holin	A0A2R2Z340	Escherichia_phage	93.0	2.7e-23
QBB80635.1|1578486_1579643_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80636.1|1579897_1580065_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
QBB83167.1|1580791_1582005_-|transposase	IS3-like element IS629 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.3	4.2e-168
QBB80637.1|1583686_1585966_+	putative oxidoreductase	NA	NA	NA	NA	NA
QBB80638.1|1586213_1586411_+	Two-protein-system connector protein SafA	NA	NA	NA	NA	NA
QBB80639.1|1586484_1587246_+	transcriptional regulator	NA	NA	NA	NA	NA
QBB80640.1|1588080_1589274_-|transposase	IS4-like element ISSfl1 family transposase	transposase	S5FM71	Shigella_phage	62.5	2.0e-138
>prophage 11
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1630793	1677475	4575536	transposase	Stx2-converting_phage(27.27%)	35	NA	NA
QBB80661.1|1630793_1631159_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB80662.1|1632060_1633662_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.8	2.2e-148
QBB80663.1|1633681_1634029_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80664.1|1634025_1634700_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
QBB80665.1|1634705_1634930_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80666.1|1635212_1635878_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB80667.1|1636075_1637113_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
QBB80668.1|1637242_1638516_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
QBB80669.1|1638629_1639148_+	L-amino acid N-acyltransferase MnaT	NA	NA	NA	NA	NA
QBB80670.1|1639144_1639594_+	DMT family transporter	NA	NA	NA	NA	NA
QBB83170.1|1639912_1640086_-	GhoT/OrtT family toxin	NA	NA	NA	NA	NA
QBB80671.1|1640280_1640376_+	stress response membrane protein YncL	NA	NA	NA	NA	NA
QBB80672.1|1640777_1641587_-	antibiotic acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	41.0	5.9e-17
QBB80673.1|1644375_1644744_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB80674.1|1647543_1648212_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
QBB80675.1|1648514_1649108_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA	NA
QBB80676.1|1649104_1650097_-	TDT family transporter	NA	NA	NA	NA	NA
QBB80677.1|1650220_1651201_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80678.1|1651195_1651732_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA	NA
QBB80679.1|1651794_1652019_-	DUF465 domain-containing protein	NA	NA	NA	NA	NA
QBB80680.1|1652034_1652238_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80681.1|1652158_1653814_-	glucan biosynthesis protein D	NA	NA	NA	NA	NA
QBB83171.1|1655598_1656522_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBB80682.1|1660778_1662107_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QBB80683.1|1662555_1663712_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80684.1|1664085_1664235_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
QBB80685.1|1665074_1665257_-	hypothetical protein	NA	A0A0R6PKG1	Moraxella_phage	68.2	2.3e-06
QBB80686.1|1665501_1666032_-	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	3.1e-19
QBB80687.1|1666220_1667222_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
QBB80688.1|1667263_1668703_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
QBB80689.1|1669494_1670650_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80690.1|1670851_1674754_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.5	8.4e-53
QBB80691.1|1674954_1675560_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
QBB80692.1|1675613_1676231_-	phosphatase	NA	NA	NA	NA	NA
QBB80693.1|1676319_1677475_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.0	7.5e-66
>prophage 12
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1689252	1746679	4575536	tRNA,transposase,integrase	Escherichia_phage(34.62%)	52	1700419:1700478	1756690:1757458
QBB80704.1|1689252_1690188_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	3.2e-144
QBB80705.1|1690316_1691684_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	4.0e-50
QBB80706.1|1691713_1691887_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80707.1|1692161_1693145_-	zinc transporter ZntB	NA	NA	NA	NA	NA
QBB80708.1|1694652_1695216_-	DNA endonuclease SmrA	NA	NA	NA	NA	NA
QBB83172.1|1695469_1696921_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
QBB80709.1|1696920_1697373_-	HlyD family secretion protein	NA	NA	NA	NA	NA
QBB80710.1|1697428_1697617_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80711.1|1697626_1698826_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QBB80712.1|1698989_1699637_-	HlyD family secretion protein	NA	NA	NA	NA	NA
1700419:1700478	attL	CGGTAATGCTGCCAACTTACTGATTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGG	NA	NA	NA	NA
QBB80713.1|1701654_1701858_+	pump protein	NA	NA	NA	NA	NA
QBB80714.1|1701868_1702384_+	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	42.8	1.1e-24
QBB80715.1|1702578_1703331_+	transcriptional regulator FNR	NA	NA	NA	NA	NA
QBB80716.1|1703482_1704433_+	universal stress protein UspE	NA	NA	NA	NA	NA
QBB80717.1|1705836_1706202_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB80718.1|1708064_1709096_+	low conductance mechanosensitive channel YnaI	NA	NA	NA	NA	NA
QBB80719.1|1709146_1710760_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB80720.1|1712140_1713055_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB80721.1|1713054_1713882_+	manganese/iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.5	3.8e-11
QBB80722.1|1713878_1714736_+	metal ABC transporter permease	NA	NA	NA	NA	NA
QBB80723.1|1714732_1715590_+	metal ABC transporter permease	NA	NA	NA	NA	NA
QBB80724.1|1715937_1717539_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.8	2.2e-148
QBB80725.1|1717558_1717906_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB80726.1|1717902_1718577_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
QBB80727.1|1719822_1720029_-	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	93.9	9.9e-30
QBB80728.1|1720790_1721958_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
QBB83173.1|1722217_1723201_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80729.1|1723290_1723782_-	hypothetical protein	NA	NA	NA	NA	NA
QBB83174.1|1724079_1724760_-	Rha family transcriptional regulator	NA	B5AX29	Iodobacteriophage	44.0	1.6e-12
QBB80730.1|1724835_1726048_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	1.2e-167
QBB80731.1|1727691_1729302_-|integrase	site-specific integrase	integrase	A0A059XK29	uncultured_phage	28.4	2.3e-12
QBB80732.1|1729817_1730036_+	hypothetical protein	NA	NA	NA	NA	NA
QBB83175.1|1729955_1730516_-	ORF6N domain-containing protein	NA	A0A0N7C203	Escherichia_phage	74.4	1.1e-43
QBB80733.1|1731166_1731532_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB80734.1|1733129_1733684_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	70.5	3.7e-71
QBB80735.1|1733680_1733971_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	3.3e-47
QBB80736.1|1733970_1734570_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	94.5	1.4e-108
QBB80737.1|1735418_1735670_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80738.1|1735906_1736119_-	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	92.9	8.1e-27
QBB80739.1|1736516_1736882_-	DUF551 domain-containing protein	NA	Q08J61	Stx2-converting_phage	53.7	6.1e-30
QBB80740.1|1736881_1737547_-	hypothetical protein	NA	A0A076G611	Escherichia_phage	44.5	2.3e-35
QBB80741.1|1737910_1738129_-	DUF4014 domain-containing protein	NA	A0A1I9LJM2	Stx_converting_phage	91.7	6.8e-29
QBB80742.1|1738221_1738578_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.4e-58
QBB80743.1|1738635_1739058_-	DUF977 family protein	NA	A0A2I6TCA7	Escherichia_phage	76.6	1.0e-52
QBB80744.1|1739072_1739819_-	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	89.2	2.1e-122
QBB83176.1|1739825_1740455_-	hypothetical protein	NA	I6PDJ3	Cronobacter_phage	50.0	4.3e-15
QBB80745.1|1740612_1741885_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
QBB80746.1|1742413_1743569_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB80747.1|1743566_1744049_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBB80748.1|1744186_1745107_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBB80749.1|1745106_1745469_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBB80750.1|1745482_1746679_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
1756690:1757458	attR	CGGTAATGCTGCCAACTTACTGATTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCATTGCCGTAAAACATGGCAACTACAGTTCACTTACACCGCCTCTCAGCCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACATTGGGGCTACGTCGGTGCTAAATCACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTGGCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACC	NA	NA	NA	NA
>prophage 13
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1809313	1854479	4575536	transposase,tail,protease	Acinetobacter_phage(22.22%)	38	NA	NA
QBB80805.1|1809313_1810363_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
QBB80806.1|1810582_1811341_+	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	2.6e-06
QBB80807.1|1811337_1811928_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
QBB80808.1|1811967_1812840_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
QBB80809.1|1812940_1813561_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
QBB80810.1|1813557_1814439_-	5'-3' exoribonuclease	NA	NA	NA	NA	NA
QBB80811.1|1814711_1816274_+	anthranilate synthase component I	NA	NA	NA	NA	NA
QBB83177.1|1817787_1819146_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	40.7	1.5e-36
QBB80812.1|1819157_1820351_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
QBB80813.1|1820350_1821157_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
QBB80814.1|1821537_1821717_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80815.1|1821802_1822303_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
QBB80816.1|1822348_1822855_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
QBB80817.1|1822914_1823553_-	outer membrane protein OmpW	NA	NA	NA	NA	NA
QBB80818.1|1823909_1824653_+	UPF0259 family protein	NA	NA	NA	NA	NA
QBB80819.1|1824682_1825222_+	septation protein A	NA	NA	NA	NA	NA
QBB80820.1|1825326_1825725_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
QBB80821.1|1825764_1826484_-	TonB system transport protein TonB	NA	NA	NA	NA	NA
QBB80822.1|1826574_1828095_+	recombinase family protein	NA	NA	NA	NA	NA
QBB80823.1|1829070_1829310_-|tail	phage tail tape measure protein	tail	NA	NA	NA	NA
QBB80824.1|1829303_1830472_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
QBB80825.1|1833938_1834487_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	36.1	1.0e-20
QBB80826.1|1835238_1835535_+	YciI family protein	NA	NA	NA	NA	NA
QBB80827.1|1835582_1836736_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
QBB80828.1|1836791_1837157_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB80829.1|1838930_1840184_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
QBB80830.1|1840238_1840523_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80831.1|1840554_1842015_+	cardiolipin synthase A	NA	NA	NA	NA	NA
QBB80832.1|1842049_1842379_+	DUF440 family protein	NA	NA	NA	NA	NA
QBB80833.1|1842431_1843436_-	oligopeptide transport ATP-binding protein OppF	NA	G9BWD6	Planktothrix_phage	35.6	8.0e-24
QBB80834.1|1843432_1844446_-	oligopeptide ABC transporter ATP-binding protein OppD	NA	G9BWD6	Planktothrix_phage	31.2	5.8e-14
QBB80835.1|1844457_1845366_-	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA	NA
QBB80836.1|1845380_1846301_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB83178.1|1846386_1848018_-	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
QBB80837.1|1848301_1848598_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80838.1|1848755_1849403_-	NAAT family transporter YchE	NA	NA	NA	NA	NA
QBB80839.1|1849879_1852555_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
QBB80840.1|1853205_1854479_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	6.8e-177
>prophage 14
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	1934647	1978067	4575536	head,tail,terminase,transposase,capsid,tRNA,portal,protease	uncultured_Caudovirales_phage(57.89%)	52	NA	NA
QBB80902.1|1934647_1935810_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	5.2e-51
QBB80903.1|1936491_1937764_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	98.0	7.0e-174
QBB80904.1|1938504_1939200_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
QBB80905.1|1939223_1940036_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
QBB80906.1|1940039_1940306_+	cell division topological specificity factor	NA	NA	NA	NA	NA
QBB80907.1|1940677_1941121_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
QBB83183.1|1941136_1941322_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80908.1|1941422_1941596_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80909.1|1941597_1941942_+	glycine zipper family protein	NA	NA	NA	NA	NA
QBB80910.1|1941951_1942281_+	YmgD family protein	NA	NA	NA	NA	NA
QBB80911.1|1942337_1944659_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	43.8	6.5e-93
QBB80912.1|1944775_1944985_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80913.1|1946013_1946157_+	hypothetical protein	NA	NA	NA	NA	NA
QBB80914.1|1946512_1948036_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
QBB80915.1|1949144_1949393_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80916.1|1949505_1949772_-	RcsB connector protein for regulation of biofilm and acid-resistance	NA	NA	NA	NA	NA
QBB80917.1|1949800_1950073_-	two-component-system connector protein YmgA	NA	NA	NA	NA	NA
QBB80918.1|1950115_1950352_-	two-component-system connector protein YcgZ	NA	NA	NA	NA	NA
QBB80919.1|1950665_1951877_+	blue light- and temperature-regulated antirepressor BluF	NA	NA	NA	NA	NA
QBB80920.1|1952081_1952813_+	helix-turn-helix-type transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	50.0	6.0e-53
QBB80921.1|1953033_1953438_+	DUF1398 domain-containing protein	NA	NA	NA	NA	NA
QBB80922.1|1954133_1954457_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	65.4	8.8e-41
QBB80923.1|1954559_1955810_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
QBB80924.1|1955981_1956635_+	23S rRNA pseudouridine synthase E	NA	NA	NA	NA	NA
QBB80925.1|1956644_1957106_+	NUDIX hydrolase	NA	NA	NA	NA	NA
QBB80926.1|1957159_1958266_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QBB83184.1|1958301_1958943_+	lysogenization regulator HflD	NA	NA	NA	NA	NA
QBB80927.1|1958946_1960317_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	9.4e-108
QBB80928.1|1960485_1961157_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
QBB80929.1|1961156_1962617_+	Virulence sensor protein PhoQ	NA	NA	NA	NA	NA
QBB80930.1|1963413_1963695_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80931.1|1964545_1966147_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	82.1	2.8e-268
QBB80932.1|1966130_1966487_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	81.4	9.4e-52
QBB83185.1|1966609_1966783_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80933.1|1966775_1967216_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	72.6	2.5e-62
QBB80934.1|1967215_1967512_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	63.3	4.4e-31
QBB80935.1|1967508_1967847_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	52.7	1.7e-31
QBB80936.1|1967843_1969055_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	79.0	1.8e-187
QBB80937.1|1969056_1969629_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	63.0	2.3e-60
QBB80938.1|1969668_1970826_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	64.9	2.8e-137
QBB80939.1|1971125_1971428_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80940.1|1971491_1971653_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
QBB80941.1|1971662_1971968_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80942.1|1971964_1972243_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80943.1|1972522_1974271_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	39.3	7.3e-89
QBB80944.1|1974267_1974567_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
QBB80945.1|1974572_1974806_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80946.1|1975020_1975242_-	hypothetical protein	NA	NA	NA	NA	NA
QBB80947.1|1975231_1975432_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
QBB80948.1|1975440_1976187_-	hypothetical protein	NA	A0A2H4JGN8	uncultured_Caudovirales_phage	51.0	1.4e-12
QBB80949.1|1976244_1976433_-	AlpA family transcriptional regulator	NA	A0A2H4JB58	uncultured_Caudovirales_phage	64.2	5.9e-13
QBB80950.1|1976837_1978067_-	DUF4102 domain-containing protein	NA	A0A2H4JB45	uncultured_Caudovirales_phage	55.9	6.4e-132
>prophage 15
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	2073129	2176651	4575536	integrase,transposase,holin,protease	Enterobacteria_phage(17.86%)	104	2112907:2112966	2122729:2123496
QBB81036.1|2073129_2074134_-|transposase	IS110-like element ISSfl8 family transposase	transposase	NA	NA	NA	NA
QBB83189.1|2074202_2074766_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
QBB81037.1|2074850_2075048_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
QBB83190.1|2075059_2075548_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81038.1|2075547_2075922_-	toxin	NA	NA	NA	NA	NA
QBB81039.1|2075968_2076343_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
QBB81040.1|2076505_2076727_-	DUF987 domain-containing protein	NA	A0A142F0X9	Klebsiella_phage	44.4	3.2e-10
QBB83191.1|2076789_2077236_-	DNA repair protein RadC	NA	NA	NA	NA	NA
QBB81041.1|2077281_2078136_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	30.5	3.5e-12
QBB81042.1|2078096_2078918_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	38.3	7.2e-47
QBB81043.1|2079017_2079191_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
QBB81044.1|2079310_2079760_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81045.1|2080668_2081739_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
QBB81046.1|2081735_2082641_-	chemotaxis protein	NA	NA	NA	NA	NA
QBB81047.1|2082637_2085022_-	dGTPase	NA	NA	NA	NA	NA
QBB81048.1|2085239_2086112_-	GTPase family protein	NA	NA	NA	NA	NA
QBB81049.1|2086442_2086625_+	hypothetical protein	NA	NA	NA	NA	NA
QBB81050.1|2086924_2087350_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	97.9	7.5e-48
QBB81051.1|2088467_2088980_-	colibactin self-protection protein ClbS	NA	NA	NA	NA	NA
QBB81052.1|2089014_2089296_-	thioesterase	NA	NA	NA	NA	NA
QBB81053.1|2091750_2092863_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	26.0	1.3e-27
QBB81054.1|2092934_2094302_+	MFS transporter	NA	NA	NA	NA	NA
QBB83192.1|2094351_2095095_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
QBB81055.1|2095346_2095637_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	66.7	1.9e-34
QBB81056.1|2095633_2096059_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	87.6	3.6e-42
QBB81057.1|2097058_2097703_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81058.1|2097723_2097993_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
QBB81059.1|2098071_2098710_-	transcriptional regulator	NA	A0A0F7L444	uncultured_marine_virus	52.5	1.9e-55
QBB81060.1|2098694_2099927_-	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	32.9	5.0e-60
QBB83193.1|2100427_2102596_-	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
QBB83194.1|2103349_2104396_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
QBB81061.1|2105070_2105262_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
QBB83195.1|2105314_2105548_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81062.1|2105643_2106267_-	DNA-binding protein	NA	NA	NA	NA	NA
QBB81063.1|2106355_2106865_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81064.1|2107066_2107258_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81065.1|2107322_2107781_+	hypothetical protein	NA	NA	NA	NA	NA
QBB81066.1|2108919_2109588_+	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA	NA
QBB81067.1|2109700_2110906_-	tetracycline efflux MFS transporter Tet(B)	NA	A0A2H4UVM2	Bodo_saltans_virus	24.4	3.0e-09
QBB81068.1|2110984_2111611_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QBB81069.1|2111588_2112275_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QBB81070.1|2112282_2112669_-	amino acid-binding protein	NA	NA	NA	NA	NA
QBB81071.1|2112661_2112925_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
2112907:2112966	attL	GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC	NA	NA	NA	NA
QBB81072.1|2113652_2113844_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81073.1|2113897_2114557_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
QBB81074.1|2114757_2115135_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBB81075.1|2115201_2118168_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
QBB81076.1|2118170_2118731_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
QBB81077.1|2118856_2119471_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QBB81078.1|2119409_2120423_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QBB81079.1|2120582_2121056_+	trimethoprim-resistant dihydrofolate reductase DfrA1	NA	A0A140HLG8	Bacillus_phage	33.8	3.7e-19
QBB81080.1|2121148_2121940_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
QBB81081.1|2122795_2123278_+	glycosyltransferase	NA	NA	NA	NA	NA
QBB81082.1|2123282_2124233_+	DUF535 domain-containing protein	NA	NA	NA	NA	NA
2122729:2123496	attR	GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAATTTATGTTGAATTTACTGTTCCATTTAAAAATGAATGGACGACAGTTCTGTTGGTTGATTGTGGGGTCTGGTTCACCTGAACTGCGGGAACATTTACAGTATCAGATTGACAGTATGGGCATGCATGATGATGTTTTTATTGCTGACAATGTTTTTCCTGCCGCCCCCGTATATCGGGTTGCCAGTCTGGTGGTTCTGCCTTCAGAAAACGAATCTTTTGGTATGGTGCTGGCAGAAGCATCGGCATTTTCTGTGCCTGTAGTGGCCACTCAGATTGGTGGAATCCCTGAGGTTATTCAGAACAACCAGACCGGGACATTGTTACCAGCAAGTAATAAGCACGCATGGATGTGCGCCCTGAATGATTTTTTTAATGACCCTGGGCGTTTTTATCAGATGGCTCGCCTGGCAAAACAGGATATAGAAGAGCGGTTTGATATTAATAAAACTGCGTTAAAAATACTCACATTAGCGAAGCAAAAGTAACAATATGTTTTCTATAAGTAACTTATCATTTATCGGTTTCCTTAAAAGGATTATTTTTTCCTCAGATTCACTACCGGGGAAGTGGGAACACAGAAAATTTCGGTTCATGTACATTTTGCGATGTTCTATAAATCCGGTTGTCAGTATTCGATATTATTATGAACTGCGTTCCTTGCCGTGCATTGAGGATATTCTGGCAATACACCCCACGTTGCCAG	NA	NA	NA	NA
QBB81083.1|2124297_2125242_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
QBB81084.1|2125422_2126578_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB81085.1|2126726_2128730_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	7.5e-21
QBB81086.1|2128674_2128833_+|holin	choline transporter	holin	NA	NA	NA	NA
QBB81087.1|2128792_2130070_+	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
QBB81088.1|2130349_2131512_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.2	2.0e-50
QBB81089.1|2131578_2131797_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QBB81090.1|2131847_2132237_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.2	1.2e-60
QBB81091.1|2133047_2133419_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81092.1|2133712_2135236_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.7e-44
QBB81093.1|2135838_2136180_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
QBB81094.1|2136973_2137180_-	helicase	NA	NA	NA	NA	NA
QBB81095.1|2137286_2137850_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
QBB81096.1|2139224_2141060_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81097.1|2141160_2141448_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
QBB81098.1|2141419_2142949_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
QBB81099.1|2143118_2144336_-	DUF4102 domain-containing protein	NA	A0A1B0VMI6	Pseudomonas_phage	34.4	1.7e-44
QBB81100.1|2144702_2145689_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81101.1|2145685_2145868_-	hemolysin activation protein	NA	NA	NA	NA	NA
QBB81102.1|2145886_2146252_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB81103.1|2146251_2147439_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QBB81104.1|2147732_2148371_-	transcriptional regulator	NA	NA	NA	NA	NA
QBB81105.1|2148601_2149750_+	pyrimidine utilization protein A	NA	NA	NA	NA	NA
QBB83196.1|2149749_2150442_+	pyrimidine utilization protein B	NA	NA	NA	NA	NA
QBB81106.1|2150453_2150840_+	pyrimidine utilization protein C	NA	NA	NA	NA	NA
QBB81107.1|2150847_2151648_+	pyrimidine utilization protein D	NA	NA	NA	NA	NA
QBB81108.1|2151657_2152248_+	malonic semialdehyde reductase	NA	NA	NA	NA	NA
QBB81109.1|2152258_2152753_+	FMN reductase	NA	Q9KX93	Enterobacteria_phage	96.9	1.1e-50
QBB81110.1|2152773_2154102_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	98.6	4.1e-233
QBB81111.1|2154183_2154291_-	hypothetical protein	NA	Q9KX95	Enterobacteria_phage	100.0	3.4e-10
QBB81112.1|2154663_2155260_+	NAD(P)H dehydrogenase (quinone)	NA	NA	NA	NA	NA
QBB81113.1|2155280_2155508_+	hypothetical protein	NA	NA	NA	NA	NA
QBB81114.1|2155545_2156787_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
QBB81115.1|2157079_2158336_-	YccE family protein	NA	NA	NA	NA	NA
QBB81116.1|2158596_2159517_+	curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	43.0	4.2e-11
QBB81117.1|2159516_2159822_+	chaperone modulatory protein CbpM	NA	NA	NA	NA	NA
QBB81118.1|2160550_2160916_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB81119.1|2163308_2163755_+	protein-tyrosine-phosphatase	NA	NA	NA	NA	NA
QBB81120.1|2163774_2165760_+	tyrosine-protein kinase	NA	NA	NA	NA	NA
QBB81121.1|2166838_2167030_-	protein ninH	NA	A0A088CC23	Shigella_phage	73.3	4.3e-19
QBB81122.1|2167438_2169040_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.8	2.2e-148
QBB81123.1|2169059_2169407_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB81124.1|2170161_2170392_+	tyrosine-protein kinase	NA	NA	NA	NA	NA
QBB83197.1|2170506_2171805_-	phytase AppA	NA	NA	NA	NA	NA
QBB81125.1|2171884_2171977_-	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA	NA
QBB81126.1|2171988_2173125_-	cytochrome bd-II ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA
QBB81127.1|2173136_2174681_-	cytochrome bd-II oxidase subunit 1	NA	NA	NA	NA	NA
QBB81128.1|2174814_2175672_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
QBB81129.1|2175668_2176067_-	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA	NA
QBB81130.1|2176063_2176651_-|protease	hydrogenase 1 maturation protease	protease	NA	NA	NA	NA
>prophage 16
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	2194089	2265630	4575536	lysis,integrase,transposase,tRNA,protease	Enterobacteria_phage(45.45%)	48	2220144:2220167	2266651:2266674
QBB81147.1|2194089_2195850_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QBB83199.1|2195918_2196437_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
QBB81148.1|2196506_2196674_-	ribosome modulation factor	NA	NA	NA	NA	NA
QBB81149.1|2196929_2197493_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
QBB81150.1|2197489_2199130_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
QBB81151.1|2199134_2200388_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
QBB81152.1|2202436_2204545_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
QBB81153.1|2204788_2205898_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
QBB81154.1|2205894_2206437_-	cell division protein ZapC	NA	NA	NA	NA	NA
QBB81155.1|2206610_2207621_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QBB81156.1|2207731_2208442_-	fimbrial chaperone	NA	NA	NA	NA	NA
QBB81157.1|2208434_2208950_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
QBB81158.1|2208957_2209500_-	fimbrial protein	NA	NA	NA	NA	NA
QBB81159.1|2209511_2210582_-	fimbrial protein	NA	NA	NA	NA	NA
QBB81160.1|2214667_2215129_+	fimbrial protein	NA	NA	NA	NA	NA
QBB81161.1|2215957_2216533_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
QBB81162.1|2216525_2217485_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB81163.1|2217481_2218627_+	alkanesulfonate monooxygenase, FMNH(2)-dependent	NA	NA	NA	NA	NA
QBB83200.1|2218638_2219286_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
QBB81164.1|2219282_2220050_+	aliphatic sulfonates ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	2.2e-29
2220144:2220167	attL	TGCCGGATGCGGCGTGAACGCCTT	NA	NA	NA	NA
QBB81165.1|2220256_2222872_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	2.4e-19
QBB81166.1|2223137_2224340_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QBB81167.1|2224509_2225910_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
QBB81168.1|2226511_2227600_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	54.3	1.8e-98
QBB81169.1|2227615_2227798_-	hypothetical protein	NA	NA	NA	NA	NA
QBB81170.1|2227784_2228975_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
QBB81171.1|2229197_2229845_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBB83201.1|2229871_2230420_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
QBB81172.1|2230600_2232448_-	L,D-transpeptidase	NA	NA	NA	NA	NA
QBB81173.1|2232655_2233984_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QBB83202.1|2234209_2235895_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
QBB81174.1|2235891_2236611_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBB81175.1|2236657_2237128_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	98.7	2.6e-81
QBB81176.1|2237168_2237630_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	99.3	1.6e-75
QBB81177.1|2245263_2246420_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	4.0e-67
QBB81178.1|2246458_2247256_+|integrase	site-specific integrase	integrase	H6WZF6	Escherichia_phage	98.0	2.4e-148
QBB81179.1|2247565_2248778_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.0	4.2e-168
QBB81180.1|2249336_2249444_+	protein YohO	NA	NA	NA	NA	NA
QBB81181.1|2249424_2250156_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB81182.1|2253413_2255711_-	beta-glucosidase BglX	NA	NA	NA	NA	NA
QBB81183.1|2255906_2257622_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
QBB81184.1|2257659_2258592_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
QBB81185.1|2258765_2259353_-	YIP1 family protein	NA	NA	NA	NA	NA
QBB81186.1|2259522_2260101_+	DedA family protein	NA	NA	NA	NA	NA
QBB81187.1|2261031_2262468_-	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA	NA
QBB83203.1|2263383_2264301_-|tRNA	tRNA dihydrouridine(16) synthase DusC	tRNA	NA	NA	NA	NA
QBB81188.1|2264539_2264938_+	hypothetical protein	NA	NA	NA	NA	NA
QBB81189.1|2264934_2265630_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
2266651:2266674	attR	TGCCGGATGCGGCGTGAACGCCTT	NA	NA	NA	NA
>prophage 17
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	2637462	2642699	4575536	transposase	Escherichia_phage(50.0%)	6	NA	NA
QBB81502.1|2637462_2637615_-	hypothetical protein	NA	G9L6F3	Escherichia_phage	96.0	1.7e-18
QBB81503.1|2637632_2637824_+	DUF2633 family protein	NA	G9L6F2	Escherichia_phage	98.4	3.6e-26
QBB81504.1|2638134_2638653_+	glycine zipper 2TM domain-containing protein	NA	G9L6F1	Escherichia_phage	99.4	6.5e-62
QBB81505.1|2640019_2641175_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
QBB81506.1|2641680_2642028_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB81507.1|2642024_2642699_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
>prophage 18
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	2848841	2868046	4575536	transposase	Escherichia_phage(30.77%)	15	NA	NA
QBB81677.1|2848841_2851403_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.4	3.9e-30
QBB81678.1|2852211_2852979_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
QBB81679.1|2853174_2854083_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	6.6e-118
QBB81680.1|2855338_2855977_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.5	3.5e-81
QBB81681.1|2856765_2856993_-	hypothetical protein	NA	C9DGL3	Escherichia_phage	92.0	2.5e-34
QBB81682.1|2857008_2857920_-	transcriptional regulator	NA	A0A0C4UQR3	Shigella_phage	41.2	6.1e-55
QBB81683.1|2859300_2861397_-|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	48.9	6.1e-175
QBB81684.1|2861398_2861650_-	DNA-binding protein	NA	A0A2D1GNH1	Pseudomonas_phage	53.0	1.1e-17
QBB81685.1|2861802_2862366_+	hypothetical protein	NA	A0A2D1GNR8	Pseudomonas_phage	55.8	1.1e-35
QBB81686.1|2863063_2863657_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
QBB81687.1|2863803_2864211_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBB81688.1|2864330_2865323_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
QBB81689.1|2865385_2866525_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
QBB81690.1|2866664_2867291_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
QBB81691.1|2867284_2868046_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	47.6	2.9e-58
>prophage 19
CP032513	Shigella flexneri strain SFL1520 chromosome, complete genome	4575536	4304622	4311736	4575536	transposase	Stx2-converting_phage(50.0%)	6	NA	NA
QBB82874.1|4304622_4305297_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
QBB82875.1|4305293_4305641_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	73.8	4.1e-44
QBB82876.1|4305660_4307262_+|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.2	3.2e-147
QBB82877.1|4307413_4308607_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	42.3	5.7e-77
QBB82878.1|4309085_4310105_+	aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	8.4e-45
QBB82879.1|4310233_4311736_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.3	1.1e-82
