assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154385.1_ASM415438v1	CP031635	Streptococcus pyogenes strain MGAS11052 chromosome, complete genome	1	606229-606391	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-U,Type I-C, Type I-U?	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U,TypeI-C,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP031635.1_594694_595258_+,NA	NA|60aa|up_9|CP031635.1_594518_594698_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP031635.1_594694_595258_+	NA	NA|883aa|up_7|CP031635.1_595259_597908_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP031635.1_598061_600470_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP031635.1_600602_601331_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP031635.1_601330_603226_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP031635.1_603230_604079_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP031635.1_604080_604755_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP031635.1_604751_605777_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP031635.1_605787_606081_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP031635.1_606551_607262_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP031635.1_607274_607898_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP031635.1_607940_609047_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|CP031635.1_609134_609875_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|CP031635.1_609871_611605_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|CP031635.1_611677_612757_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|CP031635.1_612770_613487_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|CP031635.1_613652_614126_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|CP031635.1_614267_614948_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|CP031635.1_615221_616457_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_004154385.1_ASM415438v1	CP031635	Streptococcus pyogenes strain MGAS11052 chromosome, complete genome	2	1112465-1112764	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-B,Type II-C,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,4,3	4	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031635.1_1111073_1111178_-,NA|214aa|down_8|CP031635.1_1122627_1123269_-	NA|276aa|up_9|CP031635.1_1103227_1104055_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031635.1_1104051_1104861_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031635.1_1104877_1105369_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031635.1_1105387_1105813_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031635.1_1106019_1107039_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031635.1_1107168_1107606_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|325aa|up_3|CP031635.1_1107791_1108766_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031635.1_1109181_1111014_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031635.1_1111073_1111178_-	NA	NA|378aa|up_0|CP031635.1_1111182_1112316_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP031635.1_1112866_1113529_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP031635.1_1113518_1113860_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP031635.1_1113856_1114726_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP031635.1_1114725_1118832_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP031635.1_1119276_1119909_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP031635.1_1119908_1120673_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP031635.1_1120672_1121425_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP031635.1_1121434_1122565_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP031635.1_1122627_1123269_-	NA	NA|452aa|down_9|CP031635.1_1123392_1124748_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004154385.1_ASM415438v1	CP031635	Streptococcus pyogenes strain MGAS11052 chromosome, complete genome	3	1865715-1865811	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031635.1_1860820_1860994_-,NA|538aa|up_8|CP031635.1_1861280_1862894_-,NA|174aa|up_7|CP031635.1_1862883_1863405_-,NA|123aa|up_6|CP031635.1_1863414_1863783_-,NA|64aa|up_5|CP031635.1_1863691_1863883_-,NA|111aa|up_4|CP031635.1_1863882_1864215_-,NA|61aa|up_3|CP031635.1_1864226_1864409_-,NA|90aa|up_2|CP031635.1_1864629_1864899_-,NA	NA|58aa|up_9|CP031635.1_1860820_1860994_-	NA	NA|538aa|up_8|CP031635.1_1861280_1862894_-	NA	NA|174aa|up_7|CP031635.1_1862883_1863405_-	NA	NA|123aa|up_6|CP031635.1_1863414_1863783_-	NA	NA|64aa|up_5|CP031635.1_1863691_1863883_-	NA	NA|111aa|up_4|CP031635.1_1863882_1864215_-	NA	NA|61aa|up_3|CP031635.1_1864226_1864409_-	NA	NA|90aa|up_2|CP031635.1_1864629_1864899_-	NA	NA|189aa|up_1|CP031635.1_1864928_1865495_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031635.1_1865510_1865699_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031635.1_1865867_1866311_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031635.1_1866490_1867654_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031635.1_1867810_1868422_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031635.1_1869151_1869424_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031635.1_1869440_1870808_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031635.1_1870837_1871290_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031635.1_1871286_1873263_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031635.1_1873352_1875251_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031635.1_1875374_1875692_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031635.1_1876467_1877589_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
