assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154365.1_ASM415436v1	CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1	605330-605492	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	 Type I-U?,Type I-C,Type I-U	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U?,TypeI-C,TypeI-U	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP031632.1_593795_594359_+,NA	NA|60aa|up_9|CP031632.1_593619_593799_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP031632.1_593795_594359_+	NA	NA|883aa|up_7|CP031632.1_594360_597009_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP031632.1_597162_599571_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP031632.1_599703_600432_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP031632.1_600431_602327_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP031632.1_602331_603180_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP031632.1_603181_603856_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP031632.1_603852_604878_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP031632.1_604888_605182_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP031632.1_605652_606363_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP031632.1_606375_606999_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP031632.1_607041_608148_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|CP031632.1_608235_608976_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|CP031632.1_608972_610706_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|CP031632.1_610778_611858_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|CP031632.1_611871_612588_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|CP031632.1_612753_613227_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|CP031632.1_613368_614049_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|CP031632.1_614322_615558_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_004154365.1_ASM415436v1	CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	2	1057367-1057601	1,1,2	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-C,Type II-B,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAACA	36,29,37	0	0	NA	NA	II-A:II-A:II-A	3,3,2	3	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031632.1_1055975_1056080_-,NA|214aa|down_8|CP031632.1_1067463_1068105_-	NA|276aa|up_9|CP031632.1_1048087_1048915_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031632.1_1048911_1049721_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031632.1_1049737_1050229_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031632.1_1050247_1050673_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031632.1_1050879_1051899_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031632.1_1052028_1052466_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|387aa|up_3|CP031632.1_1052651_1053812_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031632.1_1054083_1055916_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031632.1_1055975_1056080_-	NA	NA|378aa|up_0|CP031632.1_1056084_1057218_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP031632.1_1057702_1058365_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP031632.1_1058354_1058696_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP031632.1_1058692_1059562_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP031632.1_1059561_1063668_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP031632.1_1064112_1064745_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP031632.1_1064744_1065509_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP031632.1_1065508_1066261_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP031632.1_1066270_1067401_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP031632.1_1067463_1068105_-	NA	NA|452aa|down_9|CP031632.1_1068228_1069584_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004154365.1_ASM415436v1	CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	3	1838764-1838860	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031632.1_1833869_1834043_-,NA|538aa|up_8|CP031632.1_1834329_1835943_-,NA|174aa|up_7|CP031632.1_1835932_1836454_-,NA|123aa|up_6|CP031632.1_1836463_1836832_-,NA|64aa|up_5|CP031632.1_1836740_1836932_-,NA|111aa|up_4|CP031632.1_1836931_1837264_-,NA|61aa|up_3|CP031632.1_1837275_1837458_-,NA|90aa|up_2|CP031632.1_1837678_1837948_-,NA	NA|58aa|up_9|CP031632.1_1833869_1834043_-	NA	NA|538aa|up_8|CP031632.1_1834329_1835943_-	NA	NA|174aa|up_7|CP031632.1_1835932_1836454_-	NA	NA|123aa|up_6|CP031632.1_1836463_1836832_-	NA	NA|64aa|up_5|CP031632.1_1836740_1836932_-	NA	NA|111aa|up_4|CP031632.1_1836931_1837264_-	NA	NA|61aa|up_3|CP031632.1_1837275_1837458_-	NA	NA|90aa|up_2|CP031632.1_1837678_1837948_-	NA	NA|189aa|up_1|CP031632.1_1837977_1838544_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031632.1_1838559_1838748_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031632.1_1838916_1839360_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031632.1_1839539_1840703_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031632.1_1840859_1841471_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031632.1_1842200_1842473_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031632.1_1842489_1843857_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031632.1_1843886_1844339_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031632.1_1844335_1846312_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031632.1_1846401_1848300_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031632.1_1848423_1848741_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031632.1_1849516_1850638_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
