The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1880780	36553	48866	1880780		Synechococcus_phage(28.57%)	8	NA	NA
QBB35688.1|36553_40279_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB35689.1|40439_41894_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB35690.1|41921_42944_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB35691.1|43111_43666_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB35692.1|43849_45397_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB35693.1|45454_46579_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB35694.1|46831_48097_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB35695.1|48374_48866_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1880780	782643	882228	1880780	terminase,integrase,portal,tail,tRNA,head,capsid,transposase	Streptococcus_phage(40.3%)	114	802614:802673	848781:848876
QBB36334.1|782643_782868_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB36335.1|783187_784447_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB36336.1|784612_786316_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB36337.1|786341_788477_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB36338.1|788551_789859_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB36339.1|789855_790716_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB36340.1|790737_791553_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB36341.1|791668_792469_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB36342.1|792623_793460_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB36343.1|793459_794821_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB36344.1|795094_796342_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB36345.1|796584_797604_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB36346.1|797719_799213_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB36347.1|799247_801512_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB36348.1|801768_802389_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
802614:802673	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB36349.1|802751_803840_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB36350.1|804089_804899_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
QBB36351.1|804911_805655_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB36352.1|806147_806363_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB36353.1|806421_806580_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB36354.1|806609_807209_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB36355.1|807262_807472_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB36356.1|807460_807847_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB36357.1|807920_808148_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB36358.1|808255_808765_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36359.1|808819_809065_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB36360.1|809023_809233_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36361.1|809382_809622_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36362.1|809788_809974_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB36363.1|810052_810349_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB36364.1|810345_810483_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB36365.1|810563_810893_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB36366.1|810892_811087_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB36367.1|811083_811368_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36368.1|811364_812048_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	98.6	2.7e-124
QBB36369.1|812083_813487_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB36370.1|813491_813974_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB36371.1|813991_815545_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB36372.1|815808_816678_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB36373.1|816631_816982_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB36374.1|816965_817322_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB36375.1|817318_817564_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB36376.1|817563_817800_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB36377.1|817963_818248_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB36378.1|818249_818882_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB36379.1|818886_819366_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB36380.1|819814_820249_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB36381.1|820826_821741_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36382.1|821759_822221_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36383.1|822358_822736_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB36384.1|822787_822973_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB37396.1|823035_823503_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB36385.1|823480_824788_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB36386.1|824799_826302_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB36387.1|826282_827845_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB36388.1|827848_828034_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36389.1|828103_828418_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB36390.1|828420_828687_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB36391.1|828830_829364_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB36392.1|829373_829754_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB36393.1|829756_830839_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB36394.1|830848_831091_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36395.1|831104_831458_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB36396.1|831454_831763_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB36397.1|831743_832109_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB36398.1|832105_832495_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB37397.1|832549_833173_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB36399.1|833226_833580_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB37398.1|833654_833951_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB36400.1|833965_837601_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB36401.1|837632_838412_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB36402.1|838408_840463_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB36403.1|840459_841674_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB36404.1|841660_841990_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36405.1|842000_843896_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB36406.1|843909_844071_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36407.1|844073_844691_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB36408.1|844701_844998_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB36409.1|844994_845180_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB36410.1|845291_846626_+	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB36411.1|846701_847409_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB36412.1|847519_848278_-	DNAse	NA	NA	NA	NA	NA
QBB36413.1|848517_848706_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB36414.1|849296_849911_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
848781:848876	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB36415.1|850037_850823_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB36416.1|850832_851531_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB36417.1|851530_851902_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB36418.1|852086_855197_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB36419.1|855276_856290_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB36420.1|856352_857855_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB36421.1|858072_858630_+	signal peptidase I	NA	NA	NA	NA	NA
QBB36422.1|858805_860620_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB36423.1|860815_861151_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB36424.1|861257_861899_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB36425.1|861908_862538_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB36426.1|862553_863390_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB36427.1|863759_864533_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36428.1|864902_866138_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB36429.1|866257_867580_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB36430.1|868108_870427_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB36431.1|870789_871038_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB36432.1|871074_871686_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB36433.1|871696_871885_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB36434.1|871897_872437_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB36435.1|872477_872678_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB36436.1|872685_873177_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB36437.1|873339_873981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB36438.1|874123_874666_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB36439.1|874783_875485_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB36440.1|875499_878136_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB36441.1|878227_878824_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB36442.1|878834_879791_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB36443.1|879887_881228_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB36444.1|881343_882228_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 3
CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1880780	1202094	1212698	1880780		Streptococcus_phage(57.14%)	9	NA	NA
QBB36741.1|1202094_1203237_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB36742.1|1203471_1203912_+	hypothetical protein	NA	NA	NA	NA	NA
QBB36743.1|1203941_1205210_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB36744.1|1205297_1206650_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB36745.1|1206871_1207213_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB36746.1|1207273_1208440_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB36747.1|1208533_1209220_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB36748.1|1209216_1210380_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB36749.1|1210487_1212698_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 4
CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1880780	1248108	1362211	1880780	terminase,portal,protease,tail,tRNA,holin,capsid,bacteriocin	Temperate_phage(33.87%)	107	NA	NA
QBB36781.1|1248108_1250514_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
QBB36782.1|1250723_1251767_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
QBB36783.1|1252949_1253138_-	DNA-directed RNA polymerase subunit beta	NA	NA	NA	NA	NA
QBB36784.1|1253141_1254413_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
QBB36785.1|1254477_1254735_-	DUF1146 domain-containing protein	NA	NA	NA	NA	NA
QBB36786.1|1255000_1255417_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
QBB36787.1|1255429_1256836_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
QBB36788.1|1256997_1257873_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
QBB36789.1|1257888_1259397_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
QBB36790.1|1259412_1259949_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
QBB36791.1|1259948_1260443_-	ATP synthase subunit B	NA	NA	NA	NA	NA
QBB36792.1|1260460_1261177_-	ATP synthase subunit A	NA	NA	NA	NA	NA
QBB36793.1|1261211_1261409_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
QBB36794.1|1261800_1262823_-	YegS/Rv2252/BmrU family lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
QBB36795.1|1262836_1264795_-	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	34.9	7.6e-103
QBB36796.1|1264988_1265489_-	queuosine transporter QueT	NA	E7DN70	Pneumococcus_phage	31.8	5.4e-05
QBB36797.1|1265766_1268499_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QBB36798.1|1269070_1270189_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB36799.1|1270185_1271313_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB36800.1|1271321_1272245_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
QBB36801.1|1272267_1272951_-	streptolysin associated protein SagF	NA	NA	NA	NA	NA
QBB36802.1|1272947_1273619_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBB36803.1|1273593_1274952_-	streptolysin associated protein SagD	NA	NA	NA	NA	NA
QBB36804.1|1274971_1276030_-	streptolysin associated protein SagC	NA	NA	NA	NA	NA
QBB36805.1|1276026_1276977_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
QBB36806.1|1277198_1277360_-|bacteriocin	streptolysin S family bacteriocin	bacteriocin	NA	NA	NA	NA
QBB37409.1|1278224_1283249_-	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
QBB36807.1|1284604_1286146_+	transcriptional regulator	NA	NA	NA	NA	NA
QBB36808.1|1287935_1289243_-	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
QBB36809.1|1289469_1289928_+	DUF1694 domain-containing protein	NA	W6LLD2	Streptococcus_phage	39.1	2.3e-18
QBB36810.1|1290059_1291784_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
QBB36811.1|1292151_1294104_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.2	2.0e-143
QBB37410.1|1294104_1294665_-	HAD family hydrolase	NA	NA	NA	NA	NA
QBB36812.1|1295687_1296035_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
QBB36813.1|1296149_1297412_-	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	50.5	4.2e-94
QBB36814.1|1297404_1297689_-	chorismate mutase	NA	NA	NA	NA	NA
QBB36815.1|1297863_1298313_-	flavodoxin	NA	NA	NA	NA	NA
QBB36816.1|1298706_1299648_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
QBB36817.1|1299762_1300023_+	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
QBB36818.1|1300119_1301319_-	SIS domain-containing protein	NA	NA	NA	NA	NA
QBB36819.1|1301338_1302061_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB36820.1|1302208_1303756_-	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
QBB36821.1|1303907_1305326_-	dipeptidase	NA	NA	NA	NA	NA
QBB36822.1|1305637_1306396_+	DNAse	NA	NA	NA	NA	NA
QBB36823.1|1306506_1307214_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB36824.1|1307281_1308484_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	95.8	1.8e-232
QBB36825.1|1308599_1308827_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
QBB36826.1|1308823_1309096_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	7.2e-36
QBB36827.1|1309105_1309723_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
QBB36828.1|1309719_1310157_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	98.6	9.1e-73
QBB36829.1|1310168_1312187_-	hyaluronidase	NA	Q938J9	Temperate_phage	69.1	1.4e-168
QBB36830.1|1312197_1312527_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36831.1|1312513_1313728_-	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB36832.1|1313724_1315872_-	peptidase	NA	Q938K1	Temperate_phage	94.5	0.0e+00
QBB36833.1|1315868_1316585_-|tail	phage tail protein	tail	Q938K2	Temperate_phage	99.2	1.9e-136
QBB36834.1|1316581_1319842_-	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	98.4	0.0e+00
QBB36835.1|1319831_1320413_-	hypothetical protein	NA	Q938K4	Temperate_phage	98.4	1.6e-104
QBB36836.1|1320416_1320851_-	hypothetical protein	NA	Q938K5	Temperate_phage	99.3	2.9e-71
QBB36837.1|1320889_1321375_-|tail	phage tail protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
QBB36838.1|1321374_1321773_-|capsid	capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
QBB36839.1|1321769_1322126_-|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
QBB36840.1|1322125_1322458_-|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	100.0	9.6e-59
QBB36841.1|1322447_1322864_-	hypothetical protein	NA	Q938K7	Temperate_phage	99.1	4.3e-56
QBB36842.1|1322917_1323736_-|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
QBB36843.1|1323739_1324354_-	hypothetical protein	NA	Q938K8	Temperate_phage	95.0	3.1e-95
QBB36844.1|1324479_1324746_-	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	8.3e-37
QBB36845.1|1324832_1325060_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36846.1|1325059_1326553_-|capsid	capsid protein	capsid	Q938L1	Temperate_phage	80.8	2.1e-214
QBB36847.1|1326557_1328060_-|portal	phage portal protein	portal	Q938L2	Temperate_phage	99.6	5.9e-281
QBB36848.1|1328073_1329285_-|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
QBB36849.1|1329367_1329844_-	hypothetical protein	NA	Q938L4	Temperate_phage	68.4	4.9e-48
QBB36850.1|1330186_1331353_-	DNA modification methylase	NA	Q708N6	Streptococcus_phage	53.6	7.9e-124
QBB36851.1|1331662_1332097_-	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	95.8	4.5e-72
QBB36852.1|1332120_1332336_-	hypothetical protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	95.7	2.0e-20
QBB36853.1|1332426_1333215_-	site-specific DNA-methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	91.9	4.8e-133
QBB36854.1|1333180_1333663_-	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
QBB36855.1|1333666_1333939_-	hypothetical protein	NA	A7J287	Streptococcus_phage	60.0	3.0e-18
QBB36856.1|1333941_1334163_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36857.1|1334159_1334555_-	RusA family crossover junction endodeoxyribonuclease	NA	Q5YA86	Bacillus_phage	65.6	9.4e-45
QBB36858.1|1334547_1334766_-	hypothetical protein	NA	A0A1S5SEA6	Streptococcus_phage	64.3	1.3e-16
QBB36859.1|1335043_1337317_-	DNA primase	NA	Q5YA88	Bacillus_phage	64.2	3.8e-279
QBB36860.1|1337306_1337936_-	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	42.6	3.5e-41
QBB36861.1|1337945_1339529_-	DEAD/DEAH box helicase	NA	A0A097BY72	Enterococcus_phage	77.4	7.5e-234
QBB36862.1|1339528_1340164_-	hypothetical protein	NA	A0A097BY29	Enterococcus_phage	46.7	4.3e-31
QBB36863.1|1340185_1340920_-	hypothetical protein	NA	Q0R597	Streptococcus_phage	60.9	3.9e-76
QBB36864.1|1340921_1341344_-	hypothetical protein	NA	M1I9V9	Streptococcus_phage	59.9	4.2e-35
QBB36865.1|1341383_1342475_-	ATP-binding protein	NA	A0A0K2CZH1	Paenibacillus_phage	52.0	1.0e-96
QBB36866.1|1342489_1343809_-	chromosome segregation protein SMC	NA	A0A097BY67	Enterococcus_phage	63.6	1.1e-150
QBB36867.1|1343808_1344036_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36868.1|1344032_1344158_-	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	80.0	1.5e-09
QBB36869.1|1344159_1344297_-	hypothetical protein	NA	NA	NA	NA	NA
QBB36870.1|1344365_1344596_-	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	63.2	2.3e-19
QBB36871.1|1344779_1345541_+	XRE family transcriptional regulator	NA	X2KUB8	Streptococcus_phage	40.2	1.4e-39
QBB36872.1|1345567_1345933_+	hypothetical protein	NA	Q9T1Z1	Lactococcus_phage	67.2	2.8e-19
QBB36873.1|1346054_1347470_+	recombinase family protein	NA	A5GZ62	Lactococcus_phage	47.0	2.3e-109
QBB36874.1|1347646_1348558_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
QBB36875.1|1348554_1349532_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	74.5	3.3e-139
QBB36876.1|1349528_1350419_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
QBB36877.1|1350833_1352180_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.1e-55
QBB36878.1|1352209_1353403_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QBB36879.1|1353737_1356239_-	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	48.1	7.5e-204
QBB36880.1|1356346_1357111_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
QBB36881.1|1357278_1357977_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	62.9	1.0e-78
QBB36882.1|1358286_1359225_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB36883.1|1359208_1359901_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	35.6	1.0e-30
QBB36884.1|1359919_1361018_-	peptide chain release factor 2	NA	NA	NA	NA	NA
QBB37411.1|1361086_1362211_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
>prophage 5
CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1880780	1532879	1538753	1880780		Streptococcus_phage(100.0%)	8	NA	NA
QBB37047.1|1532879_1533707_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB37048.1|1533780_1534137_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB37049.1|1534435_1535065_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB37050.1|1535111_1535504_-	hypothetical protein	NA	NA	NA	NA	NA
QBB37051.1|1535530_1536394_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB37052.1|1536398_1536722_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB37053.1|1537224_1538100_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB37054.1|1538117_1538753_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 6
CP031632	Streptococcus pyogenes strain MGAS28078 chromosome, complete genome	1880780	1833869	1843857	1880780	integrase	Streptococcus_phage(75.0%)	15	1833443:1833457	1841005:1841019
1833443:1833457	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB37319.1|1833869_1834043_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB37320.1|1834329_1835943_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB37321.1|1835932_1836454_-	hypothetical protein	NA	NA	NA	NA	NA
QBB37322.1|1836463_1836832_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB37426.1|1836740_1836932_-	hypothetical protein	NA	NA	NA	NA	NA
QBB37323.1|1836931_1837264_-	hypothetical protein	NA	NA	NA	NA	NA
QBB37324.1|1837275_1837458_-	hypothetical protein	NA	NA	NA	NA	NA
QBB37325.1|1837678_1837948_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB37326.1|1837977_1838544_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB37327.1|1838559_1838748_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB37328.1|1838916_1839360_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB37329.1|1839539_1840703_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB37330.1|1840859_1841471_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1841005:1841019	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB37331.1|1842200_1842473_-	hypothetical protein	NA	NA	NA	NA	NA
QBB37332.1|1842489_1843857_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
