assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154345.1_ASM415434v1	CP031626	Streptococcus pyogenes strain MGAS28386 chromosome, complete genome	1	604420-604582	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-U, Type I-U?,Type I-C	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U,TypeI-U?,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP031626.1_592885_593449_+,NA	NA|60aa|up_9|CP031626.1_592709_592889_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP031626.1_592885_593449_+	NA	NA|883aa|up_7|CP031626.1_593450_596099_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP031626.1_596252_598661_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP031626.1_598793_599522_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP031626.1_599521_601417_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP031626.1_601421_602270_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP031626.1_602271_602946_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP031626.1_602942_603968_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP031626.1_603978_604272_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP031626.1_604742_605453_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP031626.1_605465_606089_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP031626.1_606131_607238_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|CP031626.1_607325_608066_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|CP031626.1_608062_609796_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|CP031626.1_609868_610948_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|CP031626.1_610961_611678_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|CP031626.1_611843_612317_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|CP031626.1_612458_613139_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|CP031626.1_613412_614648_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_004154345.1_ASM415434v1	CP031626	Streptococcus pyogenes strain MGAS28386 chromosome, complete genome	2	1056516-1056750	1,1,2	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-B,Type II-A,Type II-C	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAACA	36,29,37	0	0	NA	NA	II-A:II-A:II-A	3,3,2	3	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031626.1_1055124_1055229_-,NA|214aa|down_8|CP031626.1_1066612_1067254_-	NA|276aa|up_9|CP031626.1_1047181_1048009_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031626.1_1048005_1048815_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031626.1_1048831_1049323_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031626.1_1049341_1049767_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031626.1_1049973_1050993_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031626.1_1051122_1051560_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|402aa|up_3|CP031626.1_1051745_1052951_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031626.1_1053232_1055065_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031626.1_1055124_1055229_-	NA	NA|378aa|up_0|CP031626.1_1055233_1056367_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP031626.1_1056851_1057514_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP031626.1_1057503_1057845_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP031626.1_1057841_1058711_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP031626.1_1058710_1062817_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP031626.1_1063261_1063894_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP031626.1_1063893_1064658_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP031626.1_1064657_1065410_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP031626.1_1065419_1066550_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP031626.1_1066612_1067254_-	NA	NA|452aa|down_9|CP031626.1_1067377_1068733_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004154345.1_ASM415434v1	CP031626	Streptococcus pyogenes strain MGAS28386 chromosome, complete genome	3	1795575-1795671	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031626.1_1790680_1790854_-,NA|538aa|up_8|CP031626.1_1791140_1792754_-,NA|174aa|up_7|CP031626.1_1792743_1793265_-,NA|123aa|up_6|CP031626.1_1793274_1793643_-,NA|64aa|up_5|CP031626.1_1793551_1793743_-,NA|111aa|up_4|CP031626.1_1793742_1794075_-,NA|61aa|up_3|CP031626.1_1794086_1794269_-,NA|90aa|up_2|CP031626.1_1794489_1794759_-,NA	NA|58aa|up_9|CP031626.1_1790680_1790854_-	NA	NA|538aa|up_8|CP031626.1_1791140_1792754_-	NA	NA|174aa|up_7|CP031626.1_1792743_1793265_-	NA	NA|123aa|up_6|CP031626.1_1793274_1793643_-	NA	NA|64aa|up_5|CP031626.1_1793551_1793743_-	NA	NA|111aa|up_4|CP031626.1_1793742_1794075_-	NA	NA|61aa|up_3|CP031626.1_1794086_1794269_-	NA	NA|90aa|up_2|CP031626.1_1794489_1794759_-	NA	NA|189aa|up_1|CP031626.1_1794788_1795355_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031626.1_1795370_1795559_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031626.1_1795727_1796171_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031626.1_1796350_1797514_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031626.1_1797670_1798282_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031626.1_1799011_1799284_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031626.1_1799300_1800668_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031626.1_1800697_1801150_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031626.1_1801146_1803123_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031626.1_1803212_1805111_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031626.1_1805234_1805552_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031626.1_1806327_1807449_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
