assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154285.1_ASM415428v1	CP031633	Streptococcus pyogenes strain MGAS11115 chromosome, complete genome	1	1055522-1055821	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-B,Type II-C,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,4,3	4	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031633.1_1054130_1054235_-,NA|214aa|down_8|CP031633.1_1065684_1066326_-	NA|276aa|up_9|CP031633.1_1046283_1047111_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031633.1_1047107_1047917_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031633.1_1047933_1048425_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031633.1_1048443_1048869_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031633.1_1049075_1050095_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031633.1_1050224_1050662_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|378aa|up_3|CP031633.1_1050847_1051981_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031633.1_1052238_1054071_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031633.1_1054130_1054235_-	NA	NA|378aa|up_0|CP031633.1_1054239_1055373_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP031633.1_1055923_1056586_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP031633.1_1056575_1056917_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP031633.1_1056913_1057783_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP031633.1_1057782_1061889_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP031633.1_1062333_1062966_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP031633.1_1062965_1063730_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP031633.1_1063729_1064482_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP031633.1_1064491_1065622_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP031633.1_1065684_1066326_-	NA	NA|452aa|down_9|CP031633.1_1066449_1067805_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004154285.1_ASM415428v1	CP031633	Streptococcus pyogenes strain MGAS11115 chromosome, complete genome	2	1809369-1809465	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031633.1_1804474_1804648_-,NA|538aa|up_8|CP031633.1_1804934_1806548_-,NA|174aa|up_7|CP031633.1_1806537_1807059_-,NA|123aa|up_6|CP031633.1_1807068_1807437_-,NA|64aa|up_5|CP031633.1_1807345_1807537_-,NA|111aa|up_4|CP031633.1_1807536_1807869_-,NA|61aa|up_3|CP031633.1_1807880_1808063_-,NA|90aa|up_2|CP031633.1_1808283_1808553_-,NA	NA|58aa|up_9|CP031633.1_1804474_1804648_-	NA	NA|538aa|up_8|CP031633.1_1804934_1806548_-	NA	NA|174aa|up_7|CP031633.1_1806537_1807059_-	NA	NA|123aa|up_6|CP031633.1_1807068_1807437_-	NA	NA|64aa|up_5|CP031633.1_1807345_1807537_-	NA	NA|111aa|up_4|CP031633.1_1807536_1807869_-	NA	NA|61aa|up_3|CP031633.1_1807880_1808063_-	NA	NA|90aa|up_2|CP031633.1_1808283_1808553_-	NA	NA|189aa|up_1|CP031633.1_1808582_1809149_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031633.1_1809164_1809353_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031633.1_1809521_1809965_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031633.1_1810144_1811308_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031633.1_1811464_1812076_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031633.1_1812805_1813078_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031633.1_1813094_1814462_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031633.1_1814491_1814944_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031633.1_1814940_1816917_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031633.1_1817006_1818905_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031633.1_1819028_1819346_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031633.1_1820120_1821242_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
